Citrus Sinensis ID: 029065

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MEADRLNSPSTSVINLEVLGHQLQFSQEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccHHHHHHHHHccEEEEEccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccccccccccccccEEEEEccccccccHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHHHcccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEcccEEEEEEccccccEEEEcHHHcccEEEEEcccHHHHHHHHHHHcccEEEccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEcccccccccccccccEEEEEEEEEcHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHccEEEEccccccccccccEEEc
Coil and Loop (DISEMBL)
meadrlnspstsvINLEVLGhqlqfsqekncrkgrfcpsklkgkrVIELGAGCGVAGFGMALLGcnvittdqieVLPLLKRNvewntsrisqmnpgsdllgSIQAVeldwgnedhikavappfdyiigTDVVYAEHLLEPLLQTIfalsgpkttiLLGYEIRSTSVHEQMLQMWKSNfnvklvpkakestmwgnplgly
Flexible Loop (DISEMBL)
meadrlnspstsvinLEVLGHqlqfsqekncrkgrfcpsklkgkrVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRisqmnpgsdLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNfnvklvpkakestmwgnplgly
Low Complexity Region (SEG)
MEADRLNSPSTSVINLEVLGHQLQFSQEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Disordered region (IsUnstruct)
************VINLEVLGHQLQFSQEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP***************
Disordered Region (DISOPRED)
****R*NSPSTSVINLEVLGHQLQFSQEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Disordered Region (DISEMBL)
**********TSVINLEVLGHQLQFSQEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Disordered Region (DISPRO)
*******SPSTSVINLEVLGHQLQFSQEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEADRLNSPSTSVINLEVLGHQLQFSQEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q9H867	229	Protein-lysine methyltran	yes	no	0.708	0.615	0.326	4e-16
Q8C436	228	Protein-lysine methyltran	yes	no	0.678	0.592	0.350	5e-16
Q5BLD8	218	Protein-lysine methyltran	yes	no	0.668	0.610	0.391	6e-15
A4IGU3	215	Protein-lysine methyltran	no	no	0.688	0.637	0.328	4e-13
Q28IN4	224	Protein-lysine methyltran	no	no	0.733	0.651	0.329	7e-13
A4FV98	226	Protein-lysine methyltran	yes	no	0.698	0.615	0.328	2e-12
Q8CDZ2	244	Protein-lysine methyltran	no	no	0.678	0.553	0.343	2e-12
A6NDL7	271	Putative methyltransferas	no	no	0.728	0.535	0.317	4e-12
A6QP81	257	Protein-lysine methyltran	no	no	0.713	0.552	0.300	4e-12
Q8BLU2	248	Protein-lysine methyltran	no	no	0.713	0.572	0.307	4e-12

>sp|Q9H867|MT21D_HUMAN Protein-lysine methyltransferase METTL21D OS=Homo sapiens GN=METTL21D PE=1 SV=2

 Score = 84.7 bits (208), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 15/156 (9%)

Query: 41  LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 100
           L  + V+ELG+G G  G   A LG +V+ TD  E+  LLK N+  N   ++         
Sbjct: 66  LSRRSVLELGSGTGAVGLMAATLGADVVVTDLEELQDLLKMNINMNKHLVT--------- 116

Query: 101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160
           GS+QA  L WG E  I+    P D+I+  D +Y E  LEPLL+T+  +SG +T I+  YE
Sbjct: 117 GSVQAKVLKWGEE--IEGFPSPPDFILMADCIYYEESLEPLLKTLKDISGFETCIICCYE 174

Query: 161 IRST----SVHEQMLQMWKSNFNVKLVPKAKESTMW 192
            R+      + ++  ++ + +F+ + +P  K    +
Sbjct: 175 QRTMGKNPEIEKKYFELLQLDFDFEKIPLEKHDEEY 210

Probable methyltransferase.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8C436|MT21D_MOUSE Protein-lysine methyltransferase METTL21D OS=Mus musculus GN=Mettl21d PE=2 SV=2

 Score = 84.0 bits (206), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 83/151 (54%), Gaps = 16/151 (10%)

Query: 41  LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 100
           L  + V+ELG+G G  G   A LG +VI TD  E+  LLK N++ N   ++         
Sbjct: 66  LSRRSVLELGSGTGAVGLMAATLGADVIVTDLEELQDLLKMNIDMNKHLVT--------- 116

Query: 101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160
           GS+QA  L WG +  I+ +  P DYI+  D +Y E  LEPLL+T+  LSG +T I+  YE
Sbjct: 117 GSVQAKVLKWGED--IEDLMSP-DYILMADCIYYEESLEPLLKTLKDLSGSETCIICCYE 173

Query: 161 IRST----SVHEQMLQMWKSNFNVKLVPKAK 187
            R+      + ++  ++ + +F+ + +P  K
Sbjct: 174 QRTMGKNPEIEKKYFELLQLDFDFEEIPLDK 204

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5BLD8|MT21A_DANRE Protein-lysine methyltransferase METTL21A OS=Danio rerio GN=mettl21a PE=2 SV=1

 Score = 80.5 bits (197), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 71/143 (49%), Gaps = 10/143 (6%)

Query: 41  LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 100
           LKGKRVIELGAG G+ G   ALLG NV  TD+   L  L  NV  N  +  Q        
Sbjct: 64  LKGKRVIELGAGTGLVGIVAALLGANVTITDREPALEFLTANVHENIPQGRQ-------- 115

Query: 101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160
            ++Q  EL WG    +      +D I+G D+VY E     LLQT+  LS   T +LL   
Sbjct: 116 KAVQVSELTWGENLDLYPQG-GYDLILGADIVYLEETFPALLQTLEHLSSGDTVVLLSCR 174

Query: 161 IRSTSVHEQMLQMWKSNFNVKLV 183
           IR     E+ L   +  F+V+ V
Sbjct: 175 IRYER-DERFLTELRQRFSVQEV 196

Probable methyltransferase.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1

 Score = 74.7 bits (182), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 70/149 (46%), Gaps = 12/149 (8%)

Query: 41  LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 100
           L+   VIELGAG G+ G   ALLG  V  TD+   +  L+ NV  N  +        D L
Sbjct: 64  LQNSSVIELGAGTGLVGIVAALLGAQVTITDRDLAMEFLRMNVRDNIPK--------DSL 115

Query: 101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160
             +    L+WG           +D+I+G D++Y E     LLQT   LS  ++ ILL   
Sbjct: 116 HRVSVRALNWGKS---LEEFSTYDFILGADIIYLEETFPDLLQTFLHLSSQQSVILLSSR 172

Query: 161 IRSTSVHEQMLQMWKSNFNVKLVPKAKES 189
           +R    H+  L+M K +F +  V   K +
Sbjct: 173 LRYQRDHD-FLEMMKLHFTIADVYYDKNT 200

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q28IN4|MT21B_XENTR Protein-lysine methyltransferase METTL21B OS=Xenopus tropicalis GN=mettl21b PE=2 SV=1

 Score = 73.6 bits (179), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 15/161 (9%)

Query: 34  GRFCPSKL--KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRIS 91
           G F   KL  KGK+VIELGAG G+ G  ++LLG +V  TD    L  +++NV  N   +S
Sbjct: 66  GYFEEQKLDFKGKKVIELGAGTGIVGILVSLLGGHVTLTDLPHALSQIQKNVSAN---VS 122

Query: 92  QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGP 151
             NP        Q   L WG +   +     +D+++G D+VY       L+QT+  L GP
Sbjct: 123 SNNPP-------QVCALSWGLDQ--EKFPQDYDFVLGADIVYLHDTYPLLIQTLQYLCGP 173

Query: 152 KTTILLGYEIRSTSVHEQMLQ-MWKSNFNVKLVPKAKESTM 191
           +T+I L  ++R         Q +    F  +LV + K+  +
Sbjct: 174 QTSIFLSSKMRQEHGTMHFFQDILPQYFASELVKRNKDEEI 214

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4FV98|MT21B_BOVIN Protein-lysine methyltransferase METTL21B OS=Bos taurus GN=METTL21B PE=2 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 13/152 (8%)

Query: 41  LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 100
            +GK+VIELGAG G+ G   AL G +V  TD   VL  ++ NV+ N        PG    
Sbjct: 74  FRGKKVIELGAGTGIVGILAALQGGDVTITDLPLVLEQIQGNVQANVP------PG---- 123

Query: 101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160
           G  Q   L WG + H+      +D ++G D+VY E     LL T+  L GP  TI L  +
Sbjct: 124 GRAQVRALSWGIDQHV--FPGDYDLVLGADIVYLEPTFPLLLGTLRHLCGPHGTIYLASK 181

Query: 161 IRSTSVHEQMLQ-MWKSNFNVKLVPKAKESTM 191
           +R     E   Q +   +F ++L  + ++  +
Sbjct: 182 MREEHGTESFFQHLLPQHFQLELAQRDEDENV 213

Probable methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8CDZ2|MT21E_MOUSE Protein-lysine methyltransferase METTL21E OS=Mus musculus GN=Mettl21e PE=2 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 72/160 (45%), Gaps = 25/160 (15%)

Query: 20  GHQLQFSQEKNCRKGRFCPSKLK---------------GKRVIELGAGCGVAGFGMALLG 64
           GH++Q ++ K+C      PS L                 K VIE+GAG G+     +LLG
Sbjct: 52  GHEIQITEGKDCYGAFVWPSALVLCYFLETHAKQYNMVDKNVIEIGAGTGLVSIVASLLG 111

Query: 65  CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--EDHIKAVAPP 122
             VI TD    LP L  N+++N SR ++M          Q  EL WG   + +    +  
Sbjct: 112 ARVIATD----LPELLGNLQYNISRNTKMKCKH----LPQVKELSWGVALDRNFPRSSNN 163

Query: 123 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162
           FDYI+  DVVYA   LE LL T   L    T IL     R
Sbjct: 164 FDYILAADVVYAHPFLEELLMTFDHLCKETTIILWAMRFR 203

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6NDL7|MT21E_HUMAN Putative methyltransferase-like protein 21E pseudogene OS=Homo sapiens GN=METTL21EP PE=5 SV=2

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 76/170 (44%), Gaps = 25/170 (14%)

Query: 10  STSVINLEVLGHQLQFSQEKNCRKGRFCPSKLK---------------GKRVIELGAGCG 54
           +TS  +   +GH+++ ++  +C      PS L                 K VIE+GAG G
Sbjct: 69  TTSWESFHFIGHEIRITEAMDCYGAVVWPSALVLCYFLETNAKQYNMVDKNVIEIGAGTG 128

Query: 55  VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-- 112
           +     +LLG +V  TD  E+L  L+ N+  NT   S+  P        Q  EL WG   
Sbjct: 129 LVSIVASLLGAHVTATDLPELLGNLQYNISRNTKMKSKHLP--------QVKELSWGVAL 180

Query: 113 EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162
           + +    +  FDYI+  DVVYA   LE LL T   L    T IL   + R
Sbjct: 181 DTNFPRSSNNFDYILAADVVYAHPFLEELLITFDHLCKETTIILWAMKFR 230

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6QP81|MT21C_BOVIN Protein-lysine methyltransferase METTL21C OS=Bos taurus GN=METTL21C PE=2 SV=1

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 79/153 (51%), Gaps = 11/153 (7%)

Query: 41  LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 100
           L+G +++E+GAG G+     ++LG  V  TD  +VL  L+ N+  NT   +   P     
Sbjct: 104 LRGAKILEIGAGPGLVSIVASILGAQVTATDLPDVLGNLQYNLLKNTLNCTTYLP----- 158

Query: 101 GSIQAVELDWGN--EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158
              +  EL WG   E         +DY++ +DVVY  + L+ LL T+  L  P T +L  
Sbjct: 159 ---EVKELVWGEGLEQSFPKSTLYYDYVLASDVVYHHYFLDKLLATMVYLCQPGTVLLWA 215

Query: 159 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTM 191
            + R ++ +E  L  +K  F+  L+ +++ES++
Sbjct: 216 NKFRFSTDYE-FLDKFKQVFDTTLLAESQESSI 247

Probable methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BLU2|MT21C_MOUSE Protein-lysine methyltransferase METTL21C OS=Mus musculus GN=Mettl21c PE=2 SV=1

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 77/153 (50%), Gaps = 11/153 (7%)

Query: 41  LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 100
           L+  +++E+GAG G+     +LLG  V  TD  +VL  L+ N+  NT   +   P     
Sbjct: 95  LQDAKILEIGAGAGLVSIVSSLLGAQVTATDLPDVLGNLQYNILKNTLECTAHLP----- 149

Query: 101 GSIQAVELDWGN--EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158
              +  EL WG   E         +DY++ +DVVY  + L+ LL T+  LS P T +L  
Sbjct: 150 ---EVRELVWGEDLEQSFPKSTCCYDYVLASDVVYHHYFLDKLLATMVYLSQPGTVVLWA 206

Query: 159 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTM 191
            + R ++ +E  L  +K  F+  L+ +  ES++
Sbjct: 207 NKFRFSADYE-FLGKFKQAFDTTLLAEYSESSV 238

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
296087474	364	unnamed protein product [Vitis vinifera]	0.979	0.535	0.732	1e-87
225465726	314	PREDICTED: methyltransferase-like protei	0.979	0.621	0.732	2e-87
225436496	314	PREDICTED: methyltransferase-like protei	0.979	0.621	0.728	6e-87
255565427	314	conserved hypothetical protein [Ricinus	0.979	0.621	0.705	2e-82
449456044	309	PREDICTED: methyltransferase-like protei	0.974	0.627	0.672	1e-79
297849112	322	hypothetical protein ARALYDRAFT_888039 [	0.979	0.605	0.649	1e-79
449496188	309	PREDICTED: methyltransferase-like protei	0.974	0.627	0.672	2e-79
42571401	315	S-adenosylmethionine-dependent methyltra	0.974	0.615	0.654	2e-78
224106834	249	predicted protein [Populus trichocarpa]	0.929	0.742	0.739	5e-77
334182376	322	S-adenosylmethionine-dependent methyltra	0.954	0.590	0.657	5e-77

>gi|296087474|emb|CBI34063.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/217 (73%), Positives = 173/217 (79%), Gaps = 22/217 (10%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQ----------------------EKNCRKGRFCP 38
           ME DRLNSP+TS I  EVLGHQLQFSQ                      E+NCRKGRF P
Sbjct: 51  MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 110

Query: 39  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 98
           SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD
Sbjct: 111 SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 170

Query: 99  LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158
             GS+Q  ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTILLG
Sbjct: 171 SFGSVQVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLG 230

Query: 159 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 195
           YEIRST+VHEQML MWK NF VK++PKAK    + +P
Sbjct: 231 YEIRSTNVHEQMLDMWKQNFEVKIIPKAKMDRKYQHP 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465726|ref|XP_002263990.1| PREDICTED: methyltransferase-like protein 21D-like [Vitis vinifera]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 159/217 (73%), Positives = 173/217 (79%), Gaps = 22/217 (10%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQ----------------------EKNCRKGRFCP 38
           ME DRLNSP+TS I  EVLGHQLQFSQ                      E+NCRKGRF P
Sbjct: 1   MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 60

Query: 39  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 98
           SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 120

Query: 99  LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158
             GS+Q  ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTILLG
Sbjct: 121 SFGSVQVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLG 180

Query: 159 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 195
           YEIRST+VHEQML MWK NF VK++PKAK    + +P
Sbjct: 181 YEIRSTNVHEQMLDMWKQNFEVKIIPKAKMDRKYQHP 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436496|ref|XP_002273361.1| PREDICTED: methyltransferase-like protein 21D [Vitis vinifera] gi|297734922|emb|CBI17156.3| unnamed protein product [Vitis vinifera]

 Score =  325 bits (833), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 158/217 (72%), Positives = 173/217 (79%), Gaps = 22/217 (10%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQ----------------------EKNCRKGRFCP 38
           ME DRLNSP+TS I  EVLGHQLQFSQ                      E+NCRKGRF P
Sbjct: 1   MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 60

Query: 39  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 98
           SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 120

Query: 99  LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158
             GS++  ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTILLG
Sbjct: 121 SFGSVEVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLG 180

Query: 159 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 195
           YEIRST+VHEQML MWK NF VK++PKAK    + +P
Sbjct: 181 YEIRSTNVHEQMLDMWKQNFEVKIIPKAKMDRKYQHP 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565427|ref|XP_002523704.1| conserved hypothetical protein [Ricinus communis] gi|223537008|gb|EEF38644.1| conserved hypothetical protein [Ricinus communis]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 153/217 (70%), Positives = 167/217 (76%), Gaps = 22/217 (10%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQ----------------------EKNCRKGRFCP 38
           ME DRLNSPS+ VI LEV+ HQLQF Q                      EKNCRKGRF P
Sbjct: 1   MEHDRLNSPSSCVITLEVMSHQLQFCQDPNSKHLGTTVWDASMVFAKFLEKNCRKGRFSP 60

Query: 39  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 98
           SKLKGKRVIELGAGCGVAGFGMALLGC+V+ TDQ EVLPLL RNVE NTSRI QM+  S 
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVVATDQKEVLPLLMRNVERNTSRIMQMDTNSV 120

Query: 99  LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158
              SI+  ELDWGNEDHI+AV PPFDYIIGTDVVY EHLLEPLLQTIFALSGPKTTI++G
Sbjct: 121 SFRSIKVEELDWGNEDHIRAVDPPFDYIIGTDVVYTEHLLEPLLQTIFALSGPKTTIMMG 180

Query: 159 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 195
           YEIRSTSVHEQML MWK NF VK++PKAK  + + +P
Sbjct: 181 YEIRSTSVHEQMLDMWKKNFEVKVIPKAKMDSKYQHP 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456044|ref|XP_004145760.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus]

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/217 (67%), Positives = 169/217 (77%), Gaps = 23/217 (10%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQ----------------------EKNCRKGRFCP 38
           MEADRLNSPST  + +EVLGH+L+F Q                      E+NCRKG+F P
Sbjct: 1   MEADRLNSPSTFTMTMEVLGHELRFYQDPNSKHLGTTVWDASLVFVKFLERNCRKGKFSP 60

Query: 39  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 98
           SKLKGKRVIELGAGCG+AGFGMALLGC+V+ TDQ EVLP+L RN+E NT  ++QMNP SD
Sbjct: 61  SKLKGKRVIELGAGCGLAGFGMALLGCDVVATDQREVLPILSRNIERNTPSLAQMNP-SD 119

Query: 99  LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158
             GSI+A ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLLEPLL TI ALSGPKTTI+LG
Sbjct: 120 SFGSIRAAELDWGNEDHIKAVGPPFDFIIGTDVVYAEHLLEPLLMTIHALSGPKTTIMLG 179

Query: 159 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 195
           YEIRST+VHEQML+MWK NF VK V ++K  + + +P
Sbjct: 180 YEIRSTNVHEQMLEMWKKNFEVKTVSQSKMDSQYQHP 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849112|ref|XP_002892437.1| hypothetical protein ARALYDRAFT_888039 [Arabidopsis lyrata subsp. lyrata] gi|297338279|gb|EFH68696.1| hypothetical protein ARALYDRAFT_888039 [Arabidopsis lyrata subsp. lyrata]

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 141/217 (64%), Positives = 166/217 (76%), Gaps = 22/217 (10%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQE----------------------KNCRKGRFCP 38
           M+ DRLNSPST  + +EVLGH+L F+Q+                      KNCRKGRF P
Sbjct: 1   MDPDRLNSPSTCTVTIEVLGHELNFAQDPNSKHLGTTVWDASMVFAKYLGKNCRKGRFSP 60

Query: 39  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 98
           SKLKGKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTS I QM PGS 
Sbjct: 61  SKLKGKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSTILQMTPGSA 120

Query: 99  LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158
             GS++  ELDWGNEDHI+AV PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT++LG
Sbjct: 121 SFGSLRVAELDWGNEDHIRAVGPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLG 180

Query: 159 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 195
           YEIRST VH++MLQMWK NF VK +P++K    + +P
Sbjct: 181 YEIRSTVVHDKMLQMWKDNFEVKTIPRSKMDGEYQDP 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496188|ref|XP_004160067.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/217 (67%), Positives = 169/217 (77%), Gaps = 23/217 (10%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQ----------------------EKNCRKGRFCP 38
           MEADRLNSPST  + +EVLGH+L+F Q                      E+NCRKG+F P
Sbjct: 1   MEADRLNSPSTFTMTMEVLGHELRFYQDPNSKHLGTTVWDASLVFVKFLERNCRKGKFSP 60

Query: 39  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 98
           SKLKGKRVIELGAGCG+AGFGMALLGC+V+ TDQ EVLP+L RN+E NT  ++QMNP SD
Sbjct: 61  SKLKGKRVIELGAGCGLAGFGMALLGCDVVATDQREVLPILSRNIERNTPSLAQMNP-SD 119

Query: 99  LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158
             GSI+A ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLLEPLL TI ALSGPKTTI+LG
Sbjct: 120 SFGSIRAAELDWGNEDHIKAVGPPFDFIIGTDVVYAEHLLEPLLMTIHALSGPKTTIMLG 179

Query: 159 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 195
           YEIRST+VHEQML+MWK NF VK V ++K  + + +P
Sbjct: 180 YEIRSTNVHEQMLEMWKKNFEVKTVSQSKMDSQYQHP 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571401|ref|NP_973791.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332190127|gb|AEE28248.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/217 (65%), Positives = 165/217 (76%), Gaps = 23/217 (10%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQE----------------------KNCRKGRFCP 38
           M+ DRLNSPST  + +EVLGH+L F+Q+                      KN RKGRF  
Sbjct: 1   MDPDRLNSPSTCTVTIEVLGHELDFAQDPNSKHLGTTVWDASMVFAKYLGKNSRKGRFSS 60

Query: 39  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 98
           SKLKGKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTSRI QMNPGS 
Sbjct: 61  SKLKGKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSRIVQMNPGS- 119

Query: 99  LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158
             GS++  ELDWGNEDHI AV PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT++LG
Sbjct: 120 AFGSLRVAELDWGNEDHITAVEPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLG 179

Query: 159 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 195
           YEIRST VHE+MLQMWK NF VK +P++K    + +P
Sbjct: 180 YEIRSTVVHEKMLQMWKDNFEVKTIPRSKMDGEYQDP 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106834|ref|XP_002314301.1| predicted protein [Populus trichocarpa] gi|222850709|gb|EEE88256.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 153/207 (73%), Positives = 163/207 (78%), Gaps = 22/207 (10%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQ----------------------EKNCRKGRFCP 38
           ME DRLN PSTS I  EVLGHQLQFSQ                      E+NCR+GRFCP
Sbjct: 1   MEPDRLNYPSTSAITFEVLGHQLQFSQDPNSKHLGTTVWDASMVLVKFLERNCRRGRFCP 60

Query: 39  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 98
           SKLKGKRVIELGAGCGVAGFGMALLGC+VI TDQIEVLPLL RN E NTSRI+Q +  SD
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVIATDQIEVLPLLMRNAERNTSRITQKDSNSD 120

Query: 99  LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158
             GSIQ  ELDWGNEDHI+AV PPFDYIIGTDVVYAEHLLEPLLQT+ ALSGPKTTILLG
Sbjct: 121 SFGSIQVAELDWGNEDHIRAVDPPFDYIIGTDVVYAEHLLEPLLQTLLALSGPKTTILLG 180

Query: 159 YEIRSTSVHEQMLQMWKSNFNVKLVPK 185
           YEIRST+VH++ML MWK NF VK VPK
Sbjct: 181 YEIRSTNVHDRMLDMWKKNFEVKTVPK 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182376|ref|NP_001184933.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332190128|gb|AEE28249.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  292 bits (747), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 140/213 (65%), Positives = 162/213 (76%), Gaps = 23/213 (10%)

Query: 5   RLNSPSTSVINLEVLGHQLQFSQE----------------------KNCRKGRFCPSKLK 42
           RLNSPST  + +EVLGH+L F+Q+                      KN RKGRF  SKLK
Sbjct: 12  RLNSPSTCTVTIEVLGHELDFAQDPNSKHLGTTVWDASMVFAKYLGKNSRKGRFSSSKLK 71

Query: 43  GKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGS 102
           GKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTSRI QMNPGS   GS
Sbjct: 72  GKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSRIVQMNPGS-AFGS 130

Query: 103 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162
           ++  ELDWGNEDHI AV PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT++LGYEIR
Sbjct: 131 LRVAELDWGNEDHITAVEPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLGYEIR 190

Query: 163 STSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 195
           ST VHE+MLQMWK NF VK +P++K    + +P
Sbjct: 191 STVVHEKMLQMWKDNFEVKTIPRSKMDGEYQDP 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2197234	316	AT1G73320 "AT1G73320" [Arabido	0.708	0.446	0.361	7.2e-20
TAIR|locus:2167618	234	AT5G44170 "AT5G44170" [Arabido	0.663	0.564	0.373	9.5e-18
RGD|1306228	274	Mettl21d "methyltransferase li	0.678	0.492	0.357	1.8e-16
MGI|MGI:2684917	228	Mettl21d "methyltransferase li	0.678	0.592	0.364	2.9e-16
UNIPROTKB|Q9H867	229	METTL21D "Protein-lysine methy	0.683	0.593	0.337	7.7e-16
ZFIN|ZDB-GENE-050320-145	218	mettl21a "methyltransferase li	0.668	0.610	0.391	1.3e-15
ZFIN|ZDB-GENE-060825-19	223	mettl21d "methyltransferase li	0.738	0.659	0.316	3.3e-15
UNIPROTKB|A4FV98	226	METTL21B "Protein-lysine methy	0.693	0.610	0.324	1e-13
UNIPROTKB|A4IGU3	215	mettl21a "Protein-lysine methy	0.643	0.595	0.335	1.6e-13
RGD|1311824	218	Mettl21a "methyltransferase li	0.668	0.610	0.351	4.4e-13

TAIR|locus:2197234 AT1G73320 "AT1G73320" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 55/152 (36%), Positives = 86/152 (56%)

Query:    41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 100
             L+GK+++ELG+GCG+ G   ALLG N + TD  + L LLK+N++ N  R        +  
Sbjct:   144 LEGKKIVELGSGCGLVGCIAALLGGNAVLTDLPDRLRLLKKNIQTNLHR-------GNTR 196

Query:   101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160
             GS    EL WG++     + P  DY++G+DV+Y+E  +  L++T+  L   +TTI L  E
Sbjct:   197 GSAIVQELVWGDDPDPDLIEPFPDYVLGSDVIYSEEAVHHLVKTLLQLCSDQTTIFLSGE 256

Query:   161 IRSTSVHEQMLQMWKSNFNVKLVPKAKESTMW 192
             +R+ +V E  L+    +F +  V    E T W
Sbjct:   257 LRNDAVLEYFLETALKDFAIGRV----EQTQW 284

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2167618 AT5G44170 "AT5G44170" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 53/142 (37%), Positives = 74/142 (52%)

Query:    44 KRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGS 102
             +R IELG GCGVAG    LLG   ++ TD   V+P LK N++ N + +     G  L  S
Sbjct:    71 RRGIELGTGCGVAGMAFYLLGLTEIVLTDIAPVMPALKHNLKRNKTAL-----GKSLKTS 125

Query:   103 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 162
             I    + W N D I A+ PPFD +I  DVVY E  +  L+  +  L      +LLGY+IR
Sbjct:   126 I----VYWNNRDQISALKPPFDLVIAADVVYIEESVGQLVTAMELLVADDGAVLLGYQIR 181

Query:   163 STSVHEQMLQMWKSNFNVKLVP 184
             S    +   ++    F ++ VP
Sbjct:   182 SPEADKLFWELCDIVFKIEKVP 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|1306228 Mettl21d "methyltransferase like 21D" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 54/151 (35%), Positives = 83/151 (54%)

Query:    41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 100
             L  + V+ELG+G G  G   A LG +VI TD  E+  LLK N+  N   ++         
Sbjct:   112 LSRRSVLELGSGTGAVGLMAATLGADVIVTDLEELQDLLKMNINMNKHLVT--------- 162

Query:   101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160
             GS+QA  L WG  D I+ +  P DYI+  D +Y E  LEPLL+T+  LSG +T+I+  YE
Sbjct:   163 GSVQAKVLKWG--DDIEDLMSP-DYILMADCIYYEESLEPLLKTLKDLSGSETSIICCYE 219

Query:   161 IRSTS----VHEQMLQMWKSNFNVKLVPKAK 187
              R+      + ++  ++ + +F+ + +P  K
Sbjct:   220 QRTMGKNPEIEKKYFELLQLDFDFEKIPLDK 250

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2684917 Mettl21d "methyltransferase like 21D" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 55/151 (36%), Positives = 84/151 (55%)

Query:    41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 100
             L  + V+ELG+G G  G   A LG +VI TD  E+  LLK N++ N   ++         
Sbjct:    66 LSRRSVLELGSGTGAVGLMAATLGADVIVTDLEELQDLLKMNIDMNKHLVT--------- 116

Query:   101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160
             GS+QA  L WG ED I+ +  P DYI+  D +Y E  LEPLL+T+  LSG +T I+  YE
Sbjct:   117 GSVQAKVLKWG-ED-IEDLMSP-DYILMADCIYYEESLEPLLKTLKDLSGSETCIICCYE 173

Query:   161 IRSTS----VHEQMLQMWKSNFNVKLVPKAK 187
              R+      + ++  ++ + +F+ + +P  K
Sbjct:   174 QRTMGKNPEIEKKYFELLQLDFDFEEIPLDK 204

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018023 "peptidyl-lysine trimethylation" evidence=ISO

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q9H867 METTL21D "Protein-lysine methyltransferase METTL21D" [Homo sapiens (taxid:9606)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 51/151 (33%), Positives = 81/151 (53%)

Query:    41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 100
             L  + V+ELG+G G  G   A LG +V+ TD  E+  LLK N+  N   ++         
Sbjct:    66 LSRRSVLELGSGTGAVGLMAATLGADVVVTDLEELQDLLKMNINMNKHLVT--------- 116

Query:   101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160
             GS+QA  L WG E  I+    P D+I+  D +Y E  LEPLL+T+  +SG +T I+  YE
Sbjct:   117 GSVQAKVLKWGEE--IEGFPSPPDFILMADCIYYEESLEPLLKTLKDISGFETCIICCYE 174

Query:   161 IRSTS----VHEQMLQMWKSNFNVKLVPKAK 187
              R+      + ++  ++ + +F+ + +P  K
Sbjct:   175 QRTMGKNPEIEKKYFELLQLDFDFEKIPLEK 205

GO:0005575 "cellular_component" evidence=ND

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0018023 "peptidyl-lysine trimethylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-050320-145 mettl21a "methyltransferase like 21A" [Danio rerio (taxid:7955)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 56/143 (39%), Positives = 71/143 (49%)

Query:    41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 100
             LKGKRVIELGAG G+ G   ALLG NV  TD+   L  L  NV  N  +  Q        
Sbjct:    64 LKGKRVIELGAGTGLVGIVAALLGANVTITDREPALEFLTANVHENIPQGRQK------- 116

Query:   101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160
              ++Q  EL WG    +      +D I+G D+VY E     LLQT+  LS   T +LL   
Sbjct:   117 -AVQVSELTWGENLDLYPQGG-YDLILGADIVYLEETFPALLQTLEHLSSGDTVVLLSCR 174

Query:   161 IRSTSVHEQMLQMWKSNFNVKLV 183
             IR     E+ L   +  F+V+ V
Sbjct:   175 IRYER-DERFLTELRQRFSVQEV 196

GO:0006479 "protein methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 51/161 (31%), Positives = 82/161 (50%)

Query:    39 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 98
             S    K +IELGAG G+ G   A LG NV  TD  ++ PLL+ N++ N   I        
Sbjct:    61 SMWSSKNIIELGAGTGLVGLVAASLGANVTLTDLEDLQPLLQLNIKKNQQLIHT------ 114

Query:    99 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158
               GS+ A  L WG   ++    P   YI+  D +Y E  +EPL++T+  L+GP+T I+  
Sbjct:   115 --GSVTAKVLKWGA--NVDDFLPHPHYILMADCIYYEQSVEPLVETLKLLAGPETCIICC 170

Query:   159 YEIRSTSVHEQM----LQMWKSNFNVKLVPKAKESTMWGNP 195
             YE R+  V+ ++     ++   +F  + +   K+   + +P
Sbjct:   171 YEQRTVGVNPEIEKRFFELLLQDFQSEEISSEKQDPEFNSP 211

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|A4FV98 METTL21B "Protein-lysine methyltransferase METTL21B" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 49/151 (32%), Positives = 75/151 (49%)

Query:    42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLG 101
             +GK+VIELGAG G+ G   AL G +V  TD    LPL+   ++ N    + + PG    G
Sbjct:    75 RGKKVIELGAGTGIVGILAALQGGDVTITD----LPLVLEQIQGNVQ--ANVPPG----G 124

Query:   102 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 161
               Q   L WG + H+      +D ++G D+VY E     LL T+  L GP  TI L  ++
Sbjct:   125 RAQVRALSWGIDQHV--FPGDYDLVLGADIVYLEPTFPLLLGTLRHLCGPHGTIYLASKM 182

Query:   162 RSTSVHEQMLQ-MWKSNFNVKLVPKAKESTM 191
             R     E   Q +   +F ++L  + ++  +
Sbjct:   183 REEHGTESFFQHLLPQHFQLELAQRDEDENV 213

GO:0005622 "intracellular" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|A4IGU3 mettl21a "Protein-lysine methyltransferase METTL21A" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 47/140 (33%), Positives = 70/140 (50%)

Query:    41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 100
             L+   VIELGAG G+ G   ALLG  V  TD+   +  L+ NV  N  +        D L
Sbjct:    64 LQNSSVIELGAGTGLVGIVAALLGAQVTITDRDLAMEFLRMNVRDNIPK--------DSL 115

Query:   101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 160
               +    L+WG    ++  +  +D+I+G D++Y E     LLQT   LS  ++ ILL   
Sbjct:   116 HRVSVRALNWGKS--LEEFST-YDFILGADIIYLEETFPDLLQTFLHLSSQQSVILLSSR 172

Query:   161 IRSTSVHEQMLQMWKSNFNV 180
             +R    H+  L+M K +F +
Sbjct:   173 LRYQRDHD-FLEMMKLHFTI 191

GO:0006479 "protein methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0018022 "peptidyl-lysine methylation" evidence=ISS

RGD|1311824 Mettl21a "methyltransferase like 21A" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 51/145 (35%), Positives = 69/145 (47%)

Query:    40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDL 99
             +L+G   +ELGAG G+ G   ALLG +V  TD+   L  LK NVE N      + P    
Sbjct:    63 ELRGCSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKSNVEANLP--PHIQP---- 116

Query:   100 LGSIQAVELDWGNEDHIKAVAP-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 158
                +   EL WG   ++ + +P  FD I+G D++Y E     LLQT+  L    + ILL 
Sbjct:   117 --KVVVKELTWGQ--NLDSFSPGEFDLILGADIIYLEDTFTDLLQTLGHLCSNNSVILLA 172

Query:   159 YEIRSTSVHEQMLQMWKSNFNVKLV 183
               IR        L M +  F V  V
Sbjct:   173 CRIRYER-DNNFLTMLERQFTVSKV 196

GO:0006479 "protein methylation" evidence=ISO

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022174001 SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (282 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
pfam10294	170	pfam10294, Methyltransf_16, Putative methyltransfe	3e-29
COG3897	218	COG3897, COG3897, Predicted methyltransferase [Gen	3e-06
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	3e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	5e-04
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	0.001

>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase

 Score =  106 bits (266), Expect = 3e-29
 Identities = 46/135 (34%), Positives = 64/135 (47%), Gaps = 14/135 (10%)

Query: 32  RKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSR 89
            K     + L G  V+ELG+G G+ G  +ALL  G +V  TD  E + L+K+N+E N   
Sbjct: 34  MKITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTITDLEEAIELMKKNIELNG-- 91

Query: 90  ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP-PFDYIIGTDVVYAEHLLEPLLQTIFAL 148
                    L   + A  LDWG +       P P D I+  D VY E     L +T+  L
Sbjct: 92  ---------LSSKVTAKVLDWGEDLPDDVFDPHPVDLILAADCVYNEDSFPLLEKTLNDL 142

Query: 149 SGPKTTILLGYEIRS 163
            G +T IL+ Y+ R 
Sbjct: 143 LGKETVILVAYKKRR 157

Length = 170

>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only]

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 21/123 (17%)

Query: 38  PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVL-PLLKRNVEWNTSRISQMNP 95
           P  ++GKRV++LGAG G+     A  G   V+  D    L   ++ N   N   I     
Sbjct: 75  PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFT-- 132

Query: 96  GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 155
            +DL+GS                  P FD ++  D+ Y     + L+     L+     +
Sbjct: 133 HADLIGS-----------------PPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAV 175

Query: 156 LLG 158
           L+G
Sbjct: 176 LVG 178

Length = 218

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 18/73 (24%)

Query: 41  LKGKRVIELGAGCGVAGFGMALLG-CNVITTD-QIEVLPLLKRN-------VEWNTSRIS 91
           L+GK V++LGAG G+   G ALLG   V+  D   E L + + N       VE+  + +S
Sbjct: 44  LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVS 103

Query: 92  Q---------MNP 95
                     MNP
Sbjct: 104 DFRGKFDTVIMNP 116

Length = 198

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 21/119 (17%)

Query: 42  KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 98
            G RV+++G G G     +A L  G  V   D   E+L L + N +              
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAK------------LA 48

Query: 99  LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 157
           L   I  V+ D  +      +   FD +    +      L  LL  + +L  P   ++L
Sbjct: 49  LGPRITFVQGDAPDAL---DLLEGFDAVF---IGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 32/125 (25%)

Query: 35  RFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMN 94
           R  P    G RV+++G G G+    +   G +V   D                       
Sbjct: 15  RLLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVD----------------------- 51

Query: 95  PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEP--LLQTIFALSGPK 152
                      +     +      +A  +D I   +V+  EHL +P  LLQ +  L  P 
Sbjct: 52  -----PSPAAVLIFSLFDAPDPAVLAGKYDLITAFEVL--EHLPDPPALLQQLRELLKPG 104

Query: 153 TTILL 157
             +L+
Sbjct: 105 GVLLI 109

This family appears to be a methyltransferase domain. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.86
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.8
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.72
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.7
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.7
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.7
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.68
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.67
COG4123	248	Predicted O-methyltransferase [General function pr	99.66
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.63
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.63
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.62
PRK11207	197	tellurite resistance protein TehB; Provisional	99.62
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.62
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.61
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.6
PLN02244	340	tocopherol O-methyltransferase	99.6
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.6
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.6
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.59
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.58
PRK12335	287	tellurite resistance protein TehB; Provisional	99.58
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.57
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.57
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	99.57
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.56
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.56
PRK14967	223	putative methyltransferase; Provisional	99.56
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.55
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.54
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.54
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.54
COG3897	218	Predicted methyltransferase [General function pred	99.53
COG2890	280	HemK Methylase of polypeptide chain release factor	99.53
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.53
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.53
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.53
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.53
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.52
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.52
PRK14968	188	putative methyltransferase; Provisional	99.52
PLN02336	475	phosphoethanolamine N-methyltransferase	99.51
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.51
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.51
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.51
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.51
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.5
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.5
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.5
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.5
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.49
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.49
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.49
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.48
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.47
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.47
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.45
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.45
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.45
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.45
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.44
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.44
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.44
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.44
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.44
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.44
KOG3201	201	consensus Uncharacterized conserved protein [Funct	99.44
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.43
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.42
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.42
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.41
PLN02490	340	MPBQ/MSBQ methyltransferase	99.41
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.41
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.41
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.4
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.4
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.4
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.4
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.38
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.38
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.38
KOG4300	252	consensus Predicted methyltransferase [General fun	99.37
PRK08317	241	hypothetical protein; Provisional	99.37
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.36
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.36
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.36
PRK05785	226	hypothetical protein; Provisional	99.35
PLN02672	1082	methionine S-methyltransferase	99.35
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.34
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.34
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.32
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.31
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.31
PRK07402	196	precorrin-6B methylase; Provisional	99.31
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.31
PLN02336	475	phosphoethanolamine N-methyltransferase	99.31
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.3
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.3
PRK04266	226	fibrillarin; Provisional	99.29
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.29
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.29
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.29
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.28
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.28
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.28
PRK06922	677	hypothetical protein; Provisional	99.27
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.26
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.26
PRK06202	232	hypothetical protein; Provisional	99.24
KOG2904	328	consensus Predicted methyltransferase [General fun	99.23
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.22
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.22
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.21
KOG1271	227	consensus Methyltransferases [General function pre	99.21
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.2
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.2
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.19
PLN03075	296	nicotianamine synthase; Provisional	99.19
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.18
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.18
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.17
PHA03411	279	putative methyltransferase; Provisional	99.17
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.17
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.17
TIGR03438	301	probable methyltransferase. This model represents	99.17
PHA03412	241	putative methyltransferase; Provisional	99.16
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.16
PRK04457	262	spermidine synthase; Provisional	99.15
PTZ00146	293	fibrillarin; Provisional	99.14
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.14
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.14
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.14
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.13
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.13
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.12
TIGR00438	188	rrmJ cell division protein FtsJ.	99.12
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.11
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.1
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.1
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.09
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.09
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.09
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.08
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.04
PRK00811	283	spermidine synthase; Provisional	99.04
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.04
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.01
KOG2899	288	consensus Predicted methyltransferase [General fun	99.01
PLN02476	278	O-methyltransferase	99.0
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.99
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.98
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.97
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.95
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.94
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.94
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.92
COG4122	219	Predicted O-methyltransferase [General function pr	98.88
PRK03612	521	spermidine synthase; Provisional	98.86
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.85
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.85
KOG2361	264	consensus Predicted methyltransferase [General fun	98.85
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.84
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.83
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.83
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.82
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.82
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.8
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.8
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.76
PLN02366	308	spermidine synthase	98.76
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.74
PRK01581	374	speE spermidine synthase; Validated	98.74
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.72
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.71
KOG3010	261	consensus Methyltransferase [General function pred	98.68
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.67
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.67
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.65
PRK04148	134	hypothetical protein; Provisional	98.63
KOG2920	282	consensus Predicted methyltransferase [General fun	98.62
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.62
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.61
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.6
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.6
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.6
COG2520	341	Predicted methyltransferase [General function pred	98.55
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.55
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.52
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.49
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.48
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.46
PLN02823	336	spermine synthase	98.42
COG2521	287	Predicted archaeal methyltransferase [General func	98.37
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.36
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.36
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.32
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.31
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.31
KOG2940	325	consensus Predicted methyltransferase [General fun	98.29
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.27
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.26
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.25
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.23
PRK00536	262	speE spermidine synthase; Provisional	98.22
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.22
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.17
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.12
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.12
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.11
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.11
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.09
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.08
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.08
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.06
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.06
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.04
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.02
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.99
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.99
PRK10742	250	putative methyltransferase; Provisional	97.97
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.95
COG4076	252	Predicted RNA methylase [General function predicti	97.9
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.9
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.87
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.87
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.86
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.83
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.82
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.78
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.76
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.76
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.75
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.75
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.74
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.65
PHA01634	156	hypothetical protein	97.62
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.55
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.48
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.43
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.42
KOG2730	263	consensus Methylase [General function prediction o	97.34
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.34
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.27
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.23
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.18
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.16
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.12
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.11
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.05
PF13679	141	Methyltransf_32: Methyltransferase domain	97.04
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.96
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.93
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.88
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.88
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.82
COG1568	354	Predicted methyltransferases [General function pre	96.81
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.61
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.56
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.54
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.36
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.35
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.34
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.33
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	96.3
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.05
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	95.96
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.87
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.75
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.67
COG4262	508	Predicted spermidine synthase with an N-terminal m	95.64
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	95.63
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	95.62
PLN02668	386	indole-3-acetate carboxyl methyltransferase	95.61
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.55
KOG2352	482	consensus Predicted spermine/spermidine synthase [	95.49
KOG3115	249	consensus Methyltransferase-like protein [General	95.41
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.34
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.14
PRK11524	284	putative methyltransferase; Provisional	95.11
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	95.1
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	95.08
KOG3350	217	consensus Uncharacterized conserved protein [Funct	94.98
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	94.9
KOG1331	293	consensus Predicted methyltransferase [General fun	94.87
KOG2078	495	consensus tRNA modification enzyme [RNA processing	94.81
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	94.77
PRK13699	227	putative methylase; Provisional	94.61
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.55
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	94.15
KOG4058	199	consensus Uncharacterized conserved protein [Funct	93.91
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	93.36
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.29
KOG1227	351	consensus Putative methyltransferase [General func	93.0
COG0286	489	HsdM Type I restriction-modification system methyl	92.9
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	92.83
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.81
PRK11524	284	putative methyltransferase; Provisional	92.55
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.48
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.39
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	92.33
KOG0725	270	consensus Reductases with broad range of substrate	92.17
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.09
KOG2497	262	consensus Predicted methyltransferase [General fun	91.63
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	91.56
PRK06124	256	gluconate 5-dehydrogenase; Provisional	91.38
PRK10458	467	DNA cytosine methylase; Provisional	91.14
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	91.0
KOG2912	419	consensus Predicted DNA methylase [Function unknow	90.97
PF03269	177	DUF268: Caenorhabditis protein of unknown function	90.66
KOG3924	419	consensus Putative protein methyltransferase invol	90.22
PRK06701	290	short chain dehydrogenase; Provisional	90.18
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	90.15
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	90.0
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	89.87
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	89.61
PRK07806	248	short chain dehydrogenase; Provisional	88.64
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	88.56
PRK08324	681	short chain dehydrogenase; Validated	88.49
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	88.26
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	88.05
COG2961	279	ComJ Protein involved in catabolism of external DN	87.81
PRK05867	253	short chain dehydrogenase; Provisional	87.7
PRK07097	265	gluconate 5-dehydrogenase; Provisional	87.69
COG3392	330	Adenine-specific DNA methylase [DNA replication, r	87.47
PRK08265	261	short chain dehydrogenase; Provisional	87.47
PRK08339	263	short chain dehydrogenase; Provisional	87.44
PRK07109	334	short chain dehydrogenase; Provisional	87.3
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	87.24
COG4301	321	Uncharacterized conserved protein [Function unknow	87.11
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	87.05
PRK06139	330	short chain dehydrogenase; Provisional	87.0
PRK13699	227	putative methylase; Provisional	86.98
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	86.8
PRK08267	260	short chain dehydrogenase; Provisional	86.71
PRK12548	289	shikimate 5-dehydrogenase; Provisional	86.59
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	86.42
PRK05854	313	short chain dehydrogenase; Provisional	86.35
PRK07814	263	short chain dehydrogenase; Provisional	86.02
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	85.98
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.97
PRK06128	300	oxidoreductase; Provisional	85.89
PRK08703	239	short chain dehydrogenase; Provisional	85.77
PLN02586	360	probable cinnamyl alcohol dehydrogenase	85.76
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	85.7
PRK08589	272	short chain dehydrogenase; Validated	85.6
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	85.55
PRK07063	260	short chain dehydrogenase; Provisional	85.54
PRK05876	275	short chain dehydrogenase; Provisional	85.22
PRK06125	259	short chain dehydrogenase; Provisional	85.09
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	85.04
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	85.0
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	84.92
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	84.64
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	84.5
PRK07326	237	short chain dehydrogenase; Provisional	84.17
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	84.15
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	84.05
PRK05872	296	short chain dehydrogenase; Provisional	83.98
PRK08303	305	short chain dehydrogenase; Provisional	83.92
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	83.65
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	83.62
PRK07890	258	short chain dehydrogenase; Provisional	83.62
PRK07062	265	short chain dehydrogenase; Provisional	83.51
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	83.45
PRK05866	293	short chain dehydrogenase; Provisional	83.38
PRK06181	263	short chain dehydrogenase; Provisional	83.38
PRK07478	254	short chain dehydrogenase; Provisional	83.3
PRK07035	252	short chain dehydrogenase; Provisional	83.27
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	83.24
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	83.22
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	83.18
PRK08862	227	short chain dehydrogenase; Provisional	83.08
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	82.97
PRK06172	253	short chain dehydrogenase; Provisional	82.86
PRK07985	294	oxidoreductase; Provisional	82.83
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	82.7
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	82.67
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.54
PRK12937	245	short chain dehydrogenase; Provisional	82.28
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	82.17
PRK06194	287	hypothetical protein; Provisional	82.16
PRK05650	270	short chain dehydrogenase; Provisional	82.11
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.04
PRK12939	250	short chain dehydrogenase; Provisional	81.96
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	81.88
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	81.56
PRK08085	254	gluconate 5-dehydrogenase; Provisional	80.97
PRK06720	169	hypothetical protein; Provisional	80.94
PLN02178	375	cinnamyl-alcohol dehydrogenase	80.88
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.86
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	80.74
PRK07791	286	short chain dehydrogenase; Provisional	80.74
PRK06949	258	short chain dehydrogenase; Provisional	80.59
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	80.53
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	80.28
PRK07523	255	gluconate 5-dehydrogenase; Provisional	80.14
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.06
PRK09291	257	short chain dehydrogenase; Provisional	80.02

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.86  E-value=8e-22  Score=151.45  Aligned_cols=154  Identities=37%  Similarity=0.567  Sum_probs=99.2

Q ss_pred             eEEEeecCcceeeccccccccC-ccCCCCCCCCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhc
Q 029065           13 VINLEVLGHQLQFSQEKNCRKG-RFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSR   89 (199)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~   89 (199)
                      .++..+|+..+.++.+...... .+++..+++++|||||||+|+.|+.+++.  +++|++||++++++.++.|+..|+. 
T Consensus        15 ~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~-   93 (173)
T PF10294_consen   15 GTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGS-   93 (173)
T ss_dssp             --------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT---
T ss_pred             CCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccc-
Confidence            5677788888887766332111 13567889999999999999999999998  5679999997799999999999862 


Q ss_pred             cccCCCCCCCCCcEEEEEeeeCCCccccc-cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHH
Q 029065           90 ISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHE  168 (199)
Q Consensus        90 ~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~  168 (199)
                              ....++.+..++|++...... ...+||+|+++|++|..+.++.++.++.+++++++.++++.+.|... ..
T Consensus        94 --------~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~-~~  164 (173)
T PF10294_consen   94 --------LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRRRKS-EQ  164 (173)
T ss_dssp             --------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S-TG-GC
T ss_pred             --------cccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEecHH-HH
Confidence                    114578999999987432222 23589999999999999999999999999999999999999988553 36


Q ss_pred             HHHHHHHh
Q 029065          169 QMLQMWKS  176 (199)
Q Consensus       169 ~~~~~~~~  176 (199)
                      .|++++.+
T Consensus       165 ~F~~~~~k  172 (173)
T PF10294_consen  165 EFFDRLKK  172 (173)
T ss_dssp             HHHHHH--
T ss_pred             HHHHHhhh
Confidence            68777643

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.80  E-value=3.8e-19  Score=140.32  Aligned_cols=109  Identities=22%  Similarity=0.259  Sum_probs=92.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +.|++|||+|||.|.++..+|+.|+.|+++|.++ .++.|+..+..++..             +++.....+   ++...
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~-------------i~y~~~~~e---dl~~~  121 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN-------------IDYRQATVE---DLASA  121 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc-------------ccchhhhHH---HHHhc
Confidence            7899999999999999999999999999999965 999999998888742             333332222   22222


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS  165 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~  165 (199)
                      .++||+|++.+++.|.++++.+++.|.+++||||.+++++.+|+..
T Consensus       122 ~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k  167 (243)
T COG2227         122 GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK  167 (243)
T ss_pred             CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence            3799999999999999999999999999999999999999998764

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.72  E-value=5e-17  Score=115.39  Aligned_cols=104  Identities=23%  Similarity=0.288  Sum_probs=83.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHh--hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~--~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||||||+|..++.+++  .+++|+++|++ ++++.+++++...+.           ..++++.+.|+ ..  ...
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~i~~~~~d~-~~--~~~   66 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----------SDRITFVQGDA-EF--DPD   66 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----------TTTEEEEESCC-HG--GTT
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECcc-cc--Ccc
Confidence            478999999999999999999  78899999995 599999999855532           56899999888 11  122


Q ss_pred             cCCCccEEEEec-cccC---CcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          119 VAPPFDYIIGTD-VVYA---EHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       119 ~~~~fD~Ii~~~-~~~~---~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..++||+|++.. +..+   ......+++.+.+.|+|||.+++..
T Consensus        67 ~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   67 FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            345799999998 3321   2467889999999999999999875

...

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.70  E-value=4.3e-16  Score=116.93  Aligned_cols=110  Identities=23%  Similarity=0.304  Sum_probs=92.3

Q ss_pred             CCCcEEEeCCCcChHHHHHH-hh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMA-LL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la-~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|..+..++ ..  +++|+++|+++ +++.|+..+..++            ..++++.+.|+.+.... 
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~------------~~ni~~~~~d~~~l~~~-   69 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG------------LDNIEFIQGDIEDLPQE-   69 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT------------STTEEEEESBTTCGCGC-
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc------------ccccceEEeehhccccc-
Confidence            46899999999999999999 43  67899999955 9999999988876            34899999998763221 


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS  165 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~  165 (199)
                      . .+.||+|+++.++++..+...+++.+.++|+++|.+++........
T Consensus        70 ~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~  116 (152)
T PF13847_consen   70 L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE  116 (152)
T ss_dssp             S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred             c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence            1 2789999999999999999999999999999999999999884443

...

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.70  E-value=2.5e-17  Score=131.13  Aligned_cols=113  Identities=17%  Similarity=0.262  Sum_probs=87.0

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.|++|||+|||+|++|..||+.|++|+|+|.++ +++.|++....+-..      ..+..-++++...+.+..     
T Consensus        87 ~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~------~~~~~y~l~~~~~~~E~~-----  155 (282)
T KOG1270|consen   87 PLLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL------EGAIAYRLEYEDTDVEGL-----  155 (282)
T ss_pred             ccCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh------ccccceeeehhhcchhhc-----
Confidence            34578899999999999999999999999999955 999998874333110      000011244444333222     


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                       .+.||.|++++++.|..+++.+++.+.++|+|+|.++|++.+|.-
T Consensus       156 -~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~  200 (282)
T KOG1270|consen  156 -TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTI  200 (282)
T ss_pred             -ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence             356999999999999999999999999999999999999988753

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.70  E-value=5.8e-16  Score=118.57  Aligned_cols=106  Identities=28%  Similarity=0.351  Sum_probs=84.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCe--EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCN--VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~--v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++++|||||||+|.+++.+++.+..  |+++|+++ +++.+++|+..|+.            +.+++...|+....    
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~------------~~v~~~~~d~~~~~----   94 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL------------ENVEVVQSDLFEAL----   94 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC------------TTEEEEESSTTTTC----
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc------------cccccccccccccc----
Confidence            5779999999999999999998765  99999955 99999999999974            23788887775332    


Q ss_pred             cCCCccEEEEeccccCCc-----ChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~-----~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      ..++||+|++++|++...     ....++....++|+|||.+++......
T Consensus        95 ~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~  144 (170)
T PF05175_consen   95 PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSHL  144 (170)
T ss_dssp             CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred             cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecCC
Confidence            257999999999977644     378899999999999999988776543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.68  E-value=1.8e-15  Score=116.57  Aligned_cols=130  Identities=19%  Similarity=0.201  Sum_probs=99.2

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++++|||+|||+|.+++.++..+.+|+++|++ ++++.+++|+..++.             ++++...|+...     .
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~-----~   79 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV-------------GLDVVMTDLFKG-----V   79 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEcccccc-----c
Confidence            456789999999999999999988899999995 599999999987642             467777776432     1


Q ss_pred             CCCccEEEEeccccCCcC---------------------hHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhC
Q 029065          120 APPFDYIIGTDVVYAEHL---------------------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSN  177 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~---------------------~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~  177 (199)
                      .++||+|++++++++...                     ...+++.+.++|+|||.+++........  ..+.+.+ ..+
T Consensus        80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~--~~~~~~l~~~g  157 (179)
T TIGR00537        80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGE--PDTFDKLDERG  157 (179)
T ss_pred             CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCCh--HHHHHHHHhCC
Confidence            358999999988764321                     4678999999999999998887655421  3444444 358


Q ss_pred             CeEEEecCCCcCc
Q 029065          178 FNVKLVPKAKEST  190 (199)
Q Consensus       178 ~~v~~~~~~~~~~  190 (199)
                      |+++.+.....+-
T Consensus       158 f~~~~~~~~~~~~  170 (179)
T TIGR00537       158 FRYEIVAERGLFF  170 (179)
T ss_pred             CeEEEEEEeecCc
Confidence            9998888776653

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.67  E-value=5.5e-16  Score=129.55  Aligned_cols=109  Identities=17%  Similarity=0.280  Sum_probs=90.2

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||||||+|.++..+++.|++|+++|.+ ++++.|+.+......           ..++++.+.+..+   ....
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----------~~~i~~~~~dae~---l~~~  195 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV-----------TSTIEYLCTTAEK---LADE  195 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-----------ccceeEEecCHHH---hhhc
Confidence            467899999999999999999999999999995 599999987655431           2367777766532   2233


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      .++||+|++.++++|..+...+++.+.++|+|||.+++++..+.
T Consensus       196 ~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~  239 (322)
T PLN02396        196 GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT  239 (322)
T ss_pred             cCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence            56899999999999999999999999999999999999987654

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.66  E-value=1.1e-15  Score=122.41  Aligned_cols=126  Identities=25%  Similarity=0.316  Sum_probs=100.0

Q ss_pred             CCcEEEeCCCcChHHHHHHhh-C-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALL-G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++|||||||+|.+++.+|.+ . ++++++|+. ++.+.|++|++.|.+           .+++++.+.|+.+..... .
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l-----------~~ri~v~~~Di~~~~~~~-~  112 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPL-----------EERIQVIEADIKEFLKAL-V  112 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcc-----------hhceeEehhhHHHhhhcc-c
Confidence            679999999999999999977 4 679999995 599999999999854           679999999987554322 1


Q ss_pred             CCCccEEEEeccccCCc------------------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh-CCeE
Q 029065          120 APPFDYIIGTDVVYAEH------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNV  180 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~v  180 (199)
                      ..+||+|++|+|+|...                  .++++++...++|+|+|.++++.+...   ...+...++. +|++
T Consensus       113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~er---l~ei~~~l~~~~~~~  189 (248)
T COG4123         113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPER---LAEIIELLKSYNLEP  189 (248)
T ss_pred             ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHH---HHHHHHHHHhcCCCc
Confidence            23799999999997632                  489999999999999999999887533   3456666655 6666


Q ss_pred             EEe
Q 029065          181 KLV  183 (199)
Q Consensus       181 ~~~  183 (199)
                      +++
T Consensus       190 k~i  192 (248)
T COG4123         190 KRI  192 (248)
T ss_pred             eEE
Confidence            443

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.63  E-value=1.2e-14  Score=112.49  Aligned_cols=129  Identities=19%  Similarity=0.175  Sum_probs=95.2

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      +++.+|||+|||+|..++.++..+  ++|+++|.++ +++.+++++..++            ..++++.+.|+.+.    
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~------------~~~i~~i~~d~~~~----  104 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG------------LNNVEIVNGRAEDF----  104 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC------------CCCeEEEecchhhc----
Confidence            458899999999999999988664  5699999955 9999999887775            23688888887643    


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecCCCcC
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKES  189 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~  189 (199)
                      ...++||+|+++.    ...+..+++.+.++|+|||.+++..............+.+ ..++++....+-.+|
T Consensus       105 ~~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  173 (181)
T TIGR00138       105 QHEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGP  173 (181)
T ss_pred             cccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCCC
Confidence            1256899999875    2467788999999999999988876544333233333332 347887766665555

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.63  E-value=3.9e-15  Score=120.92  Aligned_cols=108  Identities=22%  Similarity=0.261  Sum_probs=89.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..+..++..|.+|+++|++ ++++.|++++...+.           ..++++.+.|..+..  ....
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~-----------~~~v~~~~~d~~~l~--~~~~  110 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV-----------SDNMQFIHCAAQDIA--QHLE  110 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccceEEEEcCHHHHh--hhcC
Confidence            46799999999999999999999999999995 599999998877643           346777777765332  1235


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      +.||+|++..++++..++..++..+.++|+|||.+++.....
T Consensus       111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~  152 (255)
T PRK11036        111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA  152 (255)
T ss_pred             CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence            689999999999998899999999999999999998876543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=4.6e-15  Score=121.67  Aligned_cols=127  Identities=24%  Similarity=0.299  Sum_probs=94.2

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ..+|++|||+|||+|.+++.++++|+. |+++|+.+ +++.++.|+.+|+..           ..+.....+   ... .
T Consensus       160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~-----------~~~~~~~~~---~~~-~  224 (300)
T COG2264         160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVE-----------LLVQAKGFL---LLE-V  224 (300)
T ss_pred             hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCc-----------hhhhccccc---chh-h
Confidence            347899999999999999999999997 99999966 999999999999752           111111111   111 1


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecCC
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA  186 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~  186 (199)
                      ...++||+|++|=   -..-+..+...+.++++|||.++++.-....  .+.+.+.+ ..+|.+..+..+
T Consensus       225 ~~~~~~DvIVANI---LA~vl~~La~~~~~~lkpgg~lIlSGIl~~q--~~~V~~a~~~~gf~v~~~~~~  289 (300)
T COG2264         225 PENGPFDVIVANI---LAEVLVELAPDIKRLLKPGGRLILSGILEDQ--AESVAEAYEQAGFEVVEVLER  289 (300)
T ss_pred             cccCcccEEEehh---hHHHHHHHHHHHHHHcCCCceEEEEeehHhH--HHHHHHHHHhCCCeEeEEEec
Confidence            2246999999982   2344668889999999999999999876544  35666776 568988655443

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.62  E-value=8.7e-15  Score=114.61  Aligned_cols=100  Identities=20%  Similarity=0.276  Sum_probs=81.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..++.++..|.+|+++|+++ +++.+++++..++.            .++++...|+....    ..
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~~----~~   93 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL------------DNLHTAVVDLNNLT----FD   93 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CcceEEecChhhCC----cC
Confidence            567999999999999999999999999999955 99999998876652            35677777764332    14


Q ss_pred             CCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEE
Q 029065          121 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      +.||+|+++.++++.  .....+++.+.++|+|||.+++
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            579999999888763  3688999999999999998544

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.62  E-value=3.6e-15  Score=123.03  Aligned_cols=121  Identities=24%  Similarity=0.386  Sum_probs=88.1

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ..+|++|||+|||||.+++.++++|++ |+++|+++ +++.|++|+..|+..           .++.+.    ...+   
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~-----------~~~~v~----~~~~---  220 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVE-----------DRIEVS----LSED---  220 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-T-----------TCEEES----CTSC---
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCC-----------eeEEEE----Eecc---
Confidence            346889999999999999999999996 99999954 999999999999863           344332    1111   


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV  183 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~  183 (199)
                      ...++||+|++|=.   ...+..++..+.++++|+|.++++.-.....  ..+.+.+.++|++...
T Consensus       221 ~~~~~~dlvvANI~---~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~--~~v~~a~~~g~~~~~~  281 (295)
T PF06325_consen  221 LVEGKFDLVVANIL---ADVLLELAPDIASLLKPGGYLILSGILEEQE--DEVIEAYKQGFELVEE  281 (295)
T ss_dssp             TCCS-EEEEEEES----HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGH--HHHHHHHHTTEEEEEE
T ss_pred             cccccCCEEEECCC---HHHHHHHHHHHHHhhCCCCEEEEccccHHHH--HHHHHHHHCCCEEEEE
Confidence            12479999999822   2345677788888999999999998876542  4555666568877443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.61  E-value=3.6e-15  Score=102.04  Aligned_cols=93  Identities=18%  Similarity=0.286  Sum_probs=75.9

Q ss_pred             EEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCcc
Q 029065           47 IELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD  124 (199)
Q Consensus        47 LdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD  124 (199)
                      ||+|||+|..+..++.. +.+|+++|+++ +++.+++.....               .+.+...|..+   .+..++.||
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---------------~~~~~~~d~~~---l~~~~~sfD   62 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---------------GVSFRQGDAED---LPFPDNSFD   62 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---------------TEEEEESBTTS---SSS-TT-EE
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---------------CchheeehHHh---Ccccccccc
Confidence            89999999999999998 78899999955 899888876544               34566666543   345578999


Q ss_pred             EEEEeccccCCcChHHHHHHHHHhcCCCcEEEE
Q 029065          125 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       125 ~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      +|++..++++.++...+++.+.++|+|||.++|
T Consensus        63 ~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   63 VVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            999999999999999999999999999999876

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.60  E-value=1.7e-14  Score=115.30  Aligned_cols=107  Identities=15%  Similarity=0.178  Sum_probs=91.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +|.+|||+|||||-.++.+++..  ++|+++|+++ ||+.+++.+...+.            ..+++...|.   +.++.
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~------------~~i~fv~~dA---e~LPf  115 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV------------QNVEFVVGDA---ENLPF  115 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc------------cceEEEEech---hhCCC
Confidence            78999999999999999999875  5799999965 99999999876542            2378888666   45567


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      +++.||++.++-.+.+..+++.+|+.+.|+|+|||++++..-...
T Consensus       116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p  160 (238)
T COG2226         116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            789999999999999999999999999999999998877766543

>PLN02244 tocopherol O-methyltransferase

Probab=99.60  E-value=1.2e-14  Score=122.66  Aligned_cols=106  Identities=15%  Similarity=0.077  Sum_probs=89.0

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++.+|||||||+|..+..++.. |++|+++|+++ +++.+++++..++.           ..++++...|..+.   +.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----------~~~v~~~~~D~~~~---~~  182 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----------SDKVSFQVADALNQ---PF  182 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcCcccC---CC
Confidence            45689999999999999999975 78999999955 99999988877653           34688888776543   33


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      .++.||+|++..+++|..+...+++.+.++|+|||.++|++.
T Consensus       183 ~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        183 EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            467899999999999999999999999999999999998764

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.60  E-value=3.5e-14  Score=110.21  Aligned_cols=103  Identities=18%  Similarity=0.242  Sum_probs=83.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|..++.+++.  +++|+++|.++ +++.|++++..++.            +++++...|..+..   .
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------------~~i~~~~~d~~~~~---~  109 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------------KNVTVVHGRAEEFG---Q  109 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------------CCEEEEeccHhhCC---C
Confidence            3789999999999999988863  56899999955 99999999988863            35888887775432   2


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                       .++||+|+++.    ...+..+++.+.++|+|||.+++.......
T Consensus       110 -~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~  150 (187)
T PRK00107        110 -EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRDPE  150 (187)
T ss_pred             -CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCChH
Confidence             56899999875    256889999999999999999888655433

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.60  E-value=1.5e-14  Score=113.06  Aligned_cols=100  Identities=16%  Similarity=0.208  Sum_probs=79.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..++.++..|.+|+++|+++ +++.+++++..++.             .+.....|+...   . ..
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~---~-~~   92 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL-------------PLRTDAYDINAA---A-LN   92 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC-------------CceeEeccchhc---c-cc
Confidence            457999999999999999999999999999955 99999888776642             255555554321   1 23


Q ss_pred             CCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEE
Q 029065          121 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      ++||+|+++.++++.  .....+++.+.++|+|||.+++.
T Consensus        93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            579999999888764  46789999999999999986554

Part of a tellurite-reducing operon tehA and tehB

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.59  E-value=2.8e-14  Score=114.48  Aligned_cols=110  Identities=17%  Similarity=0.190  Sum_probs=81.5

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ..+|.+|||+|||||.++..+++. +  .+|+++|+++ |++.+++++...+            ..++++.+.|..   .
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~------------~~~i~~v~~da~---~  109 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG------------LQNIEFVQGDAE---D  109 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE-BTT---B
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC------------CCCeeEEEcCHH---H
Confidence            346789999999999999999875 3  4799999965 9999999988765            237888887764   3


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      ++..++.||+|.++-.+.+..+....++.+.++|+|||.+.+.+-.+..
T Consensus       110 lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~  158 (233)
T PF01209_consen  110 LPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR  158 (233)
T ss_dssp             --S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred             hcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence            4456789999999988888899999999999999999999888776544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=4e-14  Score=115.70  Aligned_cols=128  Identities=20%  Similarity=0.256  Sum_probs=90.8

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +.+|||+|||.|.+|+.+++...  +++++|.+. +++.+++|+..|+..            ...+...|..+     ..
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~------------~~~v~~s~~~~-----~v  221 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE------------NTEVWASNLYE-----PV  221 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC------------ccEEEEecccc-----cc
Confidence            34999999999999999999865  699999976 999999999999742            32333333321     12


Q ss_pred             CCCccEEEEeccccCCc-----ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCe-EEEecCCCcCccc
Q 029065          120 APPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN-VKLVPKAKESTMW  192 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~-----~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~  192 (199)
                      .++||.||+|+|++...     ....++....+.|++||.++|+.. +... .+   ..+.+-|. ++.+++.+--..|
T Consensus       222 ~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan-~~l~-y~---~~L~~~Fg~v~~la~~~gf~Vl  295 (300)
T COG2813         222 EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN-RHLP-YE---KKLKELFGNVEVLAKNGGFKVL  295 (300)
T ss_pred             cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc-CCCC-hH---HHHHHhcCCEEEEEeCCCEEEE
Confidence            34899999999998633     244789999999999999999888 3332 22   33333343 5665555443333

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.58  E-value=6.1e-14  Score=115.88  Aligned_cols=102  Identities=22%  Similarity=0.322  Sum_probs=82.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..++.++..|.+|+++|+++ +++.+++++..++.             ++++...|.....    .
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-------------~v~~~~~D~~~~~----~  181 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-------------NIRTGLYDINSAS----I  181 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEechhccc----c
Confidence            3566999999999999999999999999999955 99999998877652             4666666654321    2


Q ss_pred             CCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEE
Q 029065          120 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .++||+|+++.++++.  .....+++.+.++|+|||.+++..
T Consensus       182 ~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        182 QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            5689999999888763  478899999999999999966543

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.57  E-value=8e-14  Score=118.68  Aligned_cols=135  Identities=13%  Similarity=0.137  Sum_probs=94.9

Q ss_pred             ceEEEeecCcceeeccccccccC----------c-cCCCCCCCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHH
Q 029065           12 SVINLEVLGHQLQFSQEKNCRKG----------R-FCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLP   77 (199)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~   77 (199)
                      ..+...+.+..+++....++-+.          . .-|.. .+.+|||||||+|.+++.+++.+  ++|+++|.++ +++
T Consensus       188 ~~~~~~~~~~~~~~~~~~gVFs~~~LD~GtrllL~~lp~~-~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~  266 (378)
T PRK15001        188 QTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPEN-LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVA  266 (378)
T ss_pred             ceeEEEEcCceEEEEecCCccCCCCcChHHHHHHHhCCcc-cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence            44566677777777766543111          0 11111 23589999999999999999874  5799999965 999


Q ss_pred             HHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCC-----cChHHHHHHHHHhcCCC
Q 029065           78 LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----HLLEPLLQTIFALSGPK  152 (199)
Q Consensus        78 ~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~-----~~~~~~l~~l~~~l~~~  152 (199)
                      .+++|++.|+..         ...++++...|....    ....+||+|+++++++..     .....++....++|+||
T Consensus       267 ~A~~N~~~n~~~---------~~~~v~~~~~D~l~~----~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpG  333 (378)
T PRK15001        267 SSRLNVETNMPE---------ALDRCEFMINNALSG----VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN  333 (378)
T ss_pred             HHHHHHHHcCcc---------cCceEEEEEcccccc----CCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccC
Confidence            999999888521         122566665554321    123579999999998653     23567888899999999


Q ss_pred             cEEEEEEE
Q 029065          153 TTILLGYE  160 (199)
Q Consensus       153 g~i~i~~~  160 (199)
                      |.++++..
T Consensus       334 G~L~iV~n  341 (378)
T PRK15001        334 GELYIVAN  341 (378)
T ss_pred             CEEEEEEe
Confidence            99999863

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.57  E-value=1.5e-14  Score=117.80  Aligned_cols=106  Identities=18%  Similarity=0.274  Sum_probs=90.4

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+-+|++|||||||.|.+++.+|+. |.+|+|+++++ ..+.+++.+...++           ..++++...||.+.   
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----------~~~v~v~l~d~rd~---  134 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----------EDNVEVRLQDYRDF---  134 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----------CcccEEEecccccc---
Confidence            4456899999999999999999987 89999999965 99999999988875           34789999999755   


Q ss_pred             cccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                         .++||-|++.+.+-+  ...++.++..+.++|+|||.+++-.-.
T Consensus       135 ---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~  178 (283)
T COG2230         135 ---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT  178 (283)
T ss_pred             ---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence               345999999999987  455999999999999999987665543

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=99.57  E-value=8.7e-14  Score=111.45  Aligned_cols=168  Identities=31%  Similarity=0.382  Sum_probs=118.7

Q ss_pred             EEEeecCcceeeccccccccCc----cCCCCC--CCCcEEEeCCCcChHHHHHHh-hCCeEEEeechhHHHHHHHHHHHh
Q 029065           14 INLEVLGHQLQFSQEKNCRKGR----FCPSKL--KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWN   86 (199)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~VLdlGcG~G~~sl~la~-~g~~v~~~D~~~~l~~a~~~~~~~   86 (199)
                      ....+|.+.-++++....++..    .+-..+  +.++|||||+|||+.|+.+|. .++.|+.+|.+..++....|...|
T Consensus        52 ~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~  131 (248)
T KOG2793|consen   52 ISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKN  131 (248)
T ss_pred             eeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhh
Confidence            4555677666666654433331    111122  356799999999999999998 688899999987777776666555


Q ss_pred             hhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC-ccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065           87 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS  165 (199)
Q Consensus        87 ~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~-fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~  165 (199)
                      +....      .-...+.+..++|++........+. ||+|++++++|.++....++.++..+|..++.++++++.|...
T Consensus       132 ~~~l~------~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~~~  205 (248)
T KOG2793|consen  132 NIALN------QLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRRDA  205 (248)
T ss_pred             hhhhh------hcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecccch
Confidence            43210      1123788999999988766555555 9999999999999999999999999999999999999988764


Q ss_pred             HHHH---HHHHHHhCCeEEEecCCC
Q 029065          166 VHEQ---MLQMWKSNFNVKLVPKAK  187 (199)
Q Consensus       166 ~~~~---~~~~~~~~~~v~~~~~~~  187 (199)
                      ..+.   +.++....+++......+
T Consensus       206 ~~~~~~~~~~~~~~~~~v~~~~~~~  230 (248)
T KOG2793|consen  206 AWEIEVLLFKKDLKIFDVVQESFFK  230 (248)
T ss_pred             HHHHHHHHhhhhhccceeeeEeccC
Confidence            3332   333334456664444333

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.56  E-value=4.9e-14  Score=109.33  Aligned_cols=103  Identities=24%  Similarity=0.298  Sum_probs=80.0

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+++.++||||||.|..+++||+.|..|+++|.+. +++.+++.++..++             .|+....|+....    
T Consensus        28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l-------------~i~~~~~Dl~~~~----   90 (192)
T PF03848_consen   28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL-------------DIRTRVADLNDFD----   90 (192)
T ss_dssp             TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT--------------TEEEEE-BGCCBS----
T ss_pred             hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc-------------eeEEEEecchhcc----
Confidence            34677999999999999999999999999999965 99988887777654             4788888875442    


Q ss_pred             cCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..+.||+|++.-++++  .+..+.+++.++..++|||.+++..
T Consensus        91 ~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen   91 FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             -TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            2468999998766654  6678899999999999999877743

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.56  E-value=2.2e-14  Score=117.56  Aligned_cols=106  Identities=18%  Similarity=0.229  Sum_probs=81.8

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ..-+|.+|||||||.|.+++.+|+. |++|+++.+++ ..+.+++.+...++           ...+++...|+.+.   
T Consensus        59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----------~~~v~v~~~D~~~~---  124 (273)
T PF02353_consen   59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----------EDRVEVRLQDYRDL---  124 (273)
T ss_dssp             T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----------SSTEEEEES-GGG----
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEeecccc---
Confidence            4456889999999999999999987 99999999965 88899998887764           45788888888633   


Q ss_pred             cccCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                         ..+||.|++.+++.|.  .++..+++.+.++|+|||.+++-.-.
T Consensus       125 ---~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~  168 (273)
T PF02353_consen  125 ---PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT  168 (273)
T ss_dssp             -----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred             ---CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence               3499999999999886  68899999999999999998876543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK14967 putative methyltransferase; Provisional

Probab=99.56  E-value=1.4e-13  Score=109.76  Aligned_cols=126  Identities=21%  Similarity=0.301  Sum_probs=91.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||+|||+|.+++.+++.++ +|+++|++. +++.+++|+..++.             ++.+...|+...    ..
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-------------~~~~~~~d~~~~----~~   98 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-------------DVDVRRGDWARA----VE   98 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-------------eeEEEECchhhh----cc
Confidence            467999999999999999998876 799999955 99999999887752             456666666432    12


Q ss_pred             CCCccEEEEeccccCCcC---------------------hHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hC
Q 029065          120 APPFDYIIGTDVVYAEHL---------------------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SN  177 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~---------------------~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~  177 (199)
                      .+.||+|+++++++....                     +..++..+.++|++||.+++.......  ...+++.+. .+
T Consensus        99 ~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~--~~~~~~~l~~~g  176 (223)
T PRK14967         99 FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG--VERTLTRLSEAG  176 (223)
T ss_pred             CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC--HHHHHHHHHHCC
Confidence            468999999987654321                     466788899999999999887654422  234444443 46


Q ss_pred             CeEEEecCC
Q 029065          178 FNVKLVPKA  186 (199)
Q Consensus       178 ~~v~~~~~~  186 (199)
                      |.++.....
T Consensus       177 ~~~~~~~~~  185 (223)
T PRK14967        177 LDAEVVASQ  185 (223)
T ss_pred             CCeEEEEee
Confidence            666555443

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.55  E-value=1.5e-13  Score=112.03  Aligned_cols=110  Identities=19%  Similarity=0.122  Sum_probs=86.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|..+..++.. +  .+|+++|+++ |++.|+++......         ....++++...|..+.   +
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---------~~~~~i~~~~~d~~~l---p  140 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---------SCYKNIEWIEGDATDL---P  140 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---------ccCCCeEEEEcccccC---C
Confidence            5679999999999999988875 4  4799999955 99999876542110         0134678888776533   3


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      ..++.||+|+++..+++..++..+++.+.++|+|||.+++.+....
T Consensus       141 ~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~  186 (261)
T PLN02233        141 FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKS  186 (261)
T ss_pred             CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCC
Confidence            4467899999999999999999999999999999999988876543

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.54  E-value=2.2e-14  Score=102.57  Aligned_cols=106  Identities=20%  Similarity=0.203  Sum_probs=83.5

Q ss_pred             CCcEEEeCCCcChHHHHHHhhC-CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALLG-CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g-~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      |.+|||+|||+|...+.+++.+ .+++++|+++ +++.++.++..++.           ..++++...|+.... .....
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----------~~~~~~~~~D~~~~~-~~~~~   68 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----------DDRVEVIVGDARDLP-EPLPD   68 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----------TTTEEEEESHHHHHH-HTCTT
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----------CceEEEEECchhhch-hhccC
Confidence            5689999999999999999998 7799999954 99999999988754           347899998885442 11345


Q ss_pred             CCccEEEEeccccCCc--------ChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          121 PPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~--------~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ++||+|++++++....        ....+++.+.++|+|+|.+++..+
T Consensus        69 ~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   69 GKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             T-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            7899999999987521        357889999999999999988764

...

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.54  E-value=8.1e-14  Score=116.85  Aligned_cols=106  Identities=20%  Similarity=0.210  Sum_probs=82.0

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ..+|++|||||||+|..+..++..|+. |+++|.+. ++..++......+           ...++.+...++.+.   +
T Consensus       120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~-----------~~~~i~~~~~d~e~l---p  185 (322)
T PRK15068        120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG-----------NDQRAHLLPLGIEQL---P  185 (322)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC-----------CCCCeEEEeCCHHHC---C
Confidence            357899999999999999999988875 99999865 6544332211111           023577777776533   2


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      . .+.||+|++..++||..++..+++.+.+.|+|||.+++...
T Consensus       186 ~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~  227 (322)
T PRK15068        186 A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETL  227 (322)
T ss_pred             C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEE
Confidence            2 56899999999999999999999999999999999988753

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.54  E-value=1.4e-13  Score=113.80  Aligned_cols=123  Identities=20%  Similarity=0.304  Sum_probs=89.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++++|||+|||+|.+++.+++.|+ +|+++|+++ +++.|++|+..|+.           ...+.....+.     ...
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~-----------~~~~~~~~~~~-----~~~  221 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQV-----------SDRLQVKLIYL-----EQP  221 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----------CcceEEEeccc-----ccc
Confidence            4678999999999999999998887 599999955 99999999988864           22344433321     112


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP  184 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~  184 (199)
                      ..++||+|+++-.   ...+..++..+.++|+|||.++++......  ...+.+.+...|.+..+.
T Consensus       222 ~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li~sgi~~~~--~~~v~~~~~~~f~~~~~~  282 (288)
T TIGR00406       222 IEGKADVIVANIL---AEVIKELYPQFSRLVKPGGWLILSGILETQ--AQSVCDAYEQGFTVVEIR  282 (288)
T ss_pred             cCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcEEEEEeCcHhH--HHHHHHHHHccCceeeEe
Confidence            2568999999743   234568899999999999999998765433  244555555557665443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=99.53  E-value=1.5e-14  Score=110.73  Aligned_cols=116  Identities=26%  Similarity=0.347  Sum_probs=97.8

Q ss_pred             cccCccCCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe
Q 029065           31 CRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL  108 (199)
Q Consensus        31 ~~~~~~~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  108 (199)
                      .++...+|..++||+|||+|+|+|+.++..++.|+. |+.+|+.. ....++.|+..|+.             .+.+...
T Consensus        68 AR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-------------~i~~~~~  134 (218)
T COG3897          68 ARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-------------SILFTHA  134 (218)
T ss_pred             HHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-------------eeEEeec
Confidence            477788999999999999999999999999999998 99999955 77788889988864             4566665


Q ss_pred             eeCCCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065          109 DWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS  165 (199)
Q Consensus       109 d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~  165 (199)
                      |...      .++.||+|+++|++|.......++.+..++...|-.+++.++.|..-
T Consensus       135 d~~g------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l  185 (218)
T COG3897         135 DLIG------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYL  185 (218)
T ss_pred             cccC------CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence            5542      35689999999999999999999997777777777888888888653

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=2.1e-13  Score=112.17  Aligned_cols=104  Identities=22%  Similarity=0.325  Sum_probs=82.4

Q ss_pred             cEEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           45 RVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      +|||||||||.+++.++..+.  +|+++|++. +++.|++|+..+++            .++.....||...     ..+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------------~~~~~~~~dlf~~-----~~~  175 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------------VRVLVVQSDLFEP-----LRG  175 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------------ccEEEEeeecccc-----cCC
Confidence            799999999999999998876  799999955 99999999999973            3555555577533     245


Q ss_pred             CccEEEEeccccCCc-------------------------ChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065          122 PFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRSTS  165 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~  165 (199)
                      +||+|++|+|+-..+                         .+..++....++|+|+|.+++........
T Consensus       176 ~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~  244 (280)
T COG2890         176 KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGE  244 (280)
T ss_pred             ceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHH
Confidence            999999999985432                         36778888889999998877766644443

>TIGR00452 methyltransferase, putative

Probab=99.53  E-value=1.1e-13  Score=115.26  Aligned_cols=107  Identities=18%  Similarity=0.168  Sum_probs=81.6

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ...+|++|||+|||+|..+..++..|+. |+|+|.+. ++.+++........           ..++.+..+++.+..  
T Consensus       118 ~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~-----------~~~v~~~~~~ie~lp--  184 (314)
T TIGR00452       118 SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN-----------DKRAILEPLGIEQLH--  184 (314)
T ss_pred             CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-----------CCCeEEEECCHHHCC--
Confidence            4567899999999999999999888875 99999965 77654332221110           235566666554332  


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                       . ...||+|++..++||..++..+++.+++.|+|||.+++...
T Consensus       185 -~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl  226 (314)
T TIGR00452       185 -E-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL  226 (314)
T ss_pred             -C-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence             2 34899999999999999999999999999999999998754

Known examples to date are restricted to the proteobacteria.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.53  E-value=9.9e-14  Score=112.27  Aligned_cols=101  Identities=16%  Similarity=0.121  Sum_probs=81.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..+..++..|.+|+++|+++ +++.++++..                 ...+...|+...   +..+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~-----------------~~~~~~~d~~~~---~~~~  101 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA-----------------ADHYLAGDIESL---PLAT  101 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----------------CCCEEEcCcccC---cCCC
Confidence            467899999999999999998899999999955 9888877632                 124455555432   2345


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      +.||+|+++.++.+..++..++..+.++|+|||.++++....
T Consensus       102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258        102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            689999999999988999999999999999999999987553

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.53  E-value=1.5e-13  Score=125.82  Aligned_cols=138  Identities=20%  Similarity=0.150  Sum_probs=106.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+|++|||+|||+|..++.++..|+. |+++|+++ +++.|++|+..|+..          ..++++.+.|..+..  ..
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----------~~~v~~i~~D~~~~l--~~  604 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----------GRQHRLIQADCLAWL--KE  604 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----------ccceEEEEccHHHHH--HH
Confidence            46899999999999999999998886 99999965 999999999999742          136888888864321  11


Q ss_pred             cCCCccEEEEeccccCCc-----------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecCC
Q 029065          119 VAPPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA  186 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~-----------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~  186 (199)
                      ..++||+|++++|.+...           ++.+++..+.++|+|||.++++...+.....   .+.+ ..++.+..+...
T Consensus       605 ~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~  681 (702)
T PRK11783        605 AREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAK  681 (702)
T ss_pred             cCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecC
Confidence            246899999998876432           3567888889999999999887765544322   2333 458999999999


Q ss_pred             CcCcccC
Q 029065          187 KESTMWG  193 (199)
Q Consensus       187 ~~~~~~~  193 (199)
                      ..+++|-
T Consensus       682 ~~~~Dhp  688 (702)
T PRK11783        682 TLPPDFA  688 (702)
T ss_pred             CCCCCCC
Confidence            9988873

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.53  E-value=1.3e-13  Score=103.36  Aligned_cols=100  Identities=23%  Similarity=0.229  Sum_probs=80.3

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..++++|||||||+|..+..++..|.+|+++|+++ +++.      .                .+.....+..   ....
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~----------------~~~~~~~~~~---~~~~   74 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R----------------NVVFDNFDAQ---DPPF   74 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T----------------TSEEEEEECH---THHC
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h----------------hhhhhhhhhh---hhhc
Confidence            46788999999999999999999999999999955 6655      1                1222222211   2223


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      ..+.||+|+++.++++..++..+++.+.++|+|||.++++.+.+..
T Consensus        75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~  120 (161)
T PF13489_consen   75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD  120 (161)
T ss_dssp             HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred             cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence            4679999999999999999999999999999999999999998753

...

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.52  E-value=1.3e-13  Score=117.44  Aligned_cols=143  Identities=20%  Similarity=0.102  Sum_probs=107.6

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~  116 (199)
                      ..+|++||++.|-||..|+++|..|| +||.+|.+. +++.|++|+++|++.          ..++.+.+.|....-. .
T Consensus       215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----------~~~~~~i~~Dvf~~l~~~  284 (393)
T COG1092         215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----------GDRHRFIVGDVFKWLRKA  284 (393)
T ss_pred             hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----------ccceeeehhhHHHHHHHH
Confidence            34599999999999999999999999 699999966 999999999999863          3456666666532211 1


Q ss_pred             cccCCCccEEEEeccccCCc---------ChHHHHHHHHHhcCCCcEEEEEEEecChh--H-HHHHHHHH-HhCCeEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTS--V-HEQMLQMW-KSNFNVKLV  183 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~---------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~--~-~~~~~~~~-~~~~~v~~~  183 (199)
                      .....+||+|+..||-|..+         ++.+++..+.++|+|||+++++...+.-.  . .+...+.. ..+.....+
T Consensus       285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~  364 (393)
T COG1092         285 ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEI  364 (393)
T ss_pred             HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEe
Confidence            11234899999999887632         57888999999999999999998876543  2 22222333 345777888


Q ss_pred             cCCCcCccc
Q 029065          184 PKAKESTMW  192 (199)
Q Consensus       184 ~~~~~~~~~  192 (199)
                      ....+++++
T Consensus       365 ~~~~~~~D~  373 (393)
T COG1092         365 EGEGQPPDH  373 (393)
T ss_pred             eccCCCCCc
Confidence            888888877

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.52  E-value=3.7e-13  Score=104.36  Aligned_cols=100  Identities=21%  Similarity=0.244  Sum_probs=78.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.+|||+|||+|.+++.+++.+  .+|+++|.+ .+++.+++|+..++.            .++++...|...     .
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------------~~i~~~~~d~~~-----~   93 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------------GNIDIIPGEAPI-----E   93 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------------CCeEEEecCchh-----h
Confidence            57799999999999999999874  479999995 599999999987752            356766655421     1


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..++||+|+++...   ..+..++..+.+.|+|||.+++....
T Consensus        94 ~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~  133 (187)
T PRK08287         94 LPGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFIL  133 (187)
T ss_pred             cCcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEec
Confidence            23579999987543   35678999999999999999886643

>PRK14968 putative methyltransferase; Provisional

Probab=99.52  E-value=4.7e-13  Score=103.22  Aligned_cols=129  Identities=22%  Similarity=0.289  Sum_probs=92.9

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++++|||+|||+|..+..++..+.+|+++|+++ +++.+++++..++..          ...+.+...|+....    .
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~----------~~~~~~~~~d~~~~~----~   87 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR----------NNGVEVIRSDLFEPF----R   87 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC----------CcceEEEeccccccc----c
Confidence            3678999999999999999998888999999954 999999998776531          112677777765321    2


Q ss_pred             CCCccEEEEeccccCC---------------------cChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hC
Q 029065          120 APPFDYIIGTDVVYAE---------------------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SN  177 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~---------------------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~  177 (199)
                      ...||+|+++++++..                     ..+..+++.+.++|+|+|.+++.......  .+.+.+.+. .+
T Consensus        88 ~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~--~~~l~~~~~~~g  165 (188)
T PRK14968         88 GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG--EDEVLEYLEKLG  165 (188)
T ss_pred             ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC--HHHHHHHHHHCC
Confidence            3479999999886541                     12566899999999999998877654322  133444443 47


Q ss_pred             CeEEEecC
Q 029065          178 FNVKLVPK  185 (199)
Q Consensus       178 ~~v~~~~~  185 (199)
                      |++..+..
T Consensus       166 ~~~~~~~~  173 (188)
T PRK14968        166 FEAEVVAE  173 (188)
T ss_pred             Ceeeeeee
Confidence            87766544

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.51  E-value=1.7e-13  Score=120.46  Aligned_cols=105  Identities=20%  Similarity=0.256  Sum_probs=86.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||||||+|.+++.++.. +++|+++|+++ +++.|+++....             ..++++...|+....   ..
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------------~~~v~~~~~d~~~~~---~~  329 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------------KCSVEFEVADCTKKT---YP  329 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------------CCceEEEEcCcccCC---CC
Confidence            4679999999999999988865 77899999954 999998876432             236788887775432   23


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .++||+|++..+++|..+...+++.+.++|+|||.+++.+..+
T Consensus       330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            4689999999999999999999999999999999999987654

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.51  E-value=3.4e-13  Score=107.68  Aligned_cols=105  Identities=14%  Similarity=0.104  Sum_probs=85.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++++|||+|||+|..+..++..   +.+|+++|++ ++++.+++++...+            ..++++...|....   .
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------------~~~v~~~~~d~~~~---~  109 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG------------LHNVELVHGNAMEL---P  109 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC------------CCceEEEEechhcC---C
Confidence            4789999999999999998865   3579999995 59999999876554            34677777776533   2


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ...++||+|+++.++.+..+...+++.+.++|+|||.+++....
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  153 (231)
T TIGR02752       110 FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETS  153 (231)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECC
Confidence            23568999999988888889999999999999999999887653

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.51  E-value=3.4e-13  Score=115.81  Aligned_cols=149  Identities=19%  Similarity=0.237  Sum_probs=101.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-cc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~  117 (199)
                      .++++|||+|||+|..++.++..|+ +|+++|.++ +++.|++|+..|+..          ..++++...|+.+... ..
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----------~~~v~~i~~D~~~~l~~~~  288 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----------LSKAEFVRDDVFKLLRTYR  288 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------CCcEEEEEccHHHHHHHHH
Confidence            4688999999999999998887777 699999955 999999999999742          1367888877753311 11


Q ss_pred             ccCCCccEEEEeccccCCc---------ChHHHHHHHHHhcCCCcEEEEEEEecC--hhHHHHHH-HHH-HhCCeEEEec
Q 029065          118 AVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQML-QMW-KSNFNVKLVP  184 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~---------~~~~~l~~l~~~l~~~g~i~i~~~~~~--~~~~~~~~-~~~-~~~~~v~~~~  184 (199)
                      ...++||+|++++|.+...         .+..++....++|+|||.++++.....  .+.+..+. +.. ..+-++..+.
T Consensus       289 ~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~  368 (396)
T PRK15128        289 DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE  368 (396)
T ss_pred             hcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            1245799999998876543         356667778899999999887655322  22222222 222 2355666666


Q ss_pred             CCCcCccc----CCCCCCC
Q 029065          185 KAKESTMW----GNPLGLY  199 (199)
Q Consensus       185 ~~~~~~~~----~~~~~~~  199 (199)
                      ....++++    .-++|.|
T Consensus       369 ~~~~~~DhP~~~~~pe~~Y  387 (396)
T PRK15128        369 QFRQAADHPVIATYPEGLY  387 (396)
T ss_pred             EcCCCCCCCCCCCCCCcCC
Confidence            66665544    2355555

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.51  E-value=2e-13  Score=110.82  Aligned_cols=97  Identities=19%  Similarity=0.171  Sum_probs=78.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .++.+|||||||+|.++..++..  +.+|+++|+++ +++.+++.                   .+++...|..+.   .
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~d~~~~---~   85 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------------GVDARTGDVRDW---K   85 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------------CCcEEEcChhhC---C
Confidence            35689999999999999999987  67899999955 88888652                   235555555422   1


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                       ..++||+|+++.++++..++..+++.+.+.|+|||.+++..+
T Consensus        86 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         86 -PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             -CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence             246899999999999989999999999999999999988754

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.51  E-value=1.5e-13  Score=112.30  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=82.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||||||+|..+..++.. +++|+++|+++ +++.++++....              .++.+...|+...   +..
T Consensus        52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~i~~~~~D~~~~---~~~  114 (263)
T PTZ00098         52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--------------NKIEFEANDILKK---DFP  114 (263)
T ss_pred             CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--------------CceEEEECCcccC---CCC
Confidence            5679999999999988888764 77899999955 889888765321              2577777776532   233


Q ss_pred             CCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .++||+|++.++++|..  +...+++.+.++|+|||.+++++..
T Consensus       115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            57899999998887754  8899999999999999999998764

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.50  E-value=5.3e-15  Score=102.97  Aligned_cols=95  Identities=16%  Similarity=0.233  Sum_probs=60.1

Q ss_pred             EEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc-CCC
Q 029065           47 IELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-APP  122 (199)
Q Consensus        47 LdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~  122 (199)
                      ||+|||+|..+..+...  ..+|+++|+++ +++.+++++.....            .....  ..+...+..... .++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~   66 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------------DNFER--LRFDVLDLFDYDPPES   66 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------------EEE--EE--SSS---CCC---
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------------cceeE--EEeecCChhhcccccc
Confidence            79999999999888877  67799999965 98888887766541            12222  222222211111 259


Q ss_pred             ccEEEEeccccCCcChHHHHHHHHHhcCCCcEE
Q 029065          123 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI  155 (199)
Q Consensus       123 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i  155 (199)
                      ||+|+++.++++.+++..+++.+.++|+|||.+
T Consensus        67 fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   67 FDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             cceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.50  E-value=6.6e-14  Score=115.92  Aligned_cols=108  Identities=18%  Similarity=0.184  Sum_probs=90.8

Q ss_pred             ccCCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           35 RFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        35 ~~~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ..|+.+|++|.|||+|||+|.+|++.|+.|++ |+++|-+++.+.|++.+..|++           ...|++.....++.
T Consensus        53 ~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~-----------~~ii~vi~gkvEdi  121 (346)
T KOG1499|consen   53 LQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGL-----------EDVITVIKGKVEDI  121 (346)
T ss_pred             hcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCc-----------cceEEEeecceEEE
Confidence            45889999999999999999999999999997 9999999988999999998875           34677777666544


Q ss_pred             ccccccCCCccEEEEeccccC---CcChHHHHHHHHHhcCCCcEEE
Q 029065          114 DHIKAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTIL  156 (199)
Q Consensus       114 ~~~~~~~~~fD~Ii~~~~~~~---~~~~~~~l~~l~~~l~~~g~i~  156 (199)
                      . +  +.++.|+|++-.+-|+   .+++..++.+..+.|+|||.+|
T Consensus       122 ~-L--P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  122 E-L--PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             e-c--CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            2 2  2578999998766554   7899999999999999998643

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.50  E-value=3.3e-13  Score=113.89  Aligned_cols=100  Identities=14%  Similarity=0.129  Sum_probs=78.8

Q ss_pred             CcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           44 KRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .+|||||||+|.+++.+++.+  .+|+++|++. +++.+++++..|+.             ..++...|...     ...
T Consensus       198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-------------~~~~~~~D~~~-----~~~  259 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-------------EGEVFASNVFS-----DIK  259 (342)
T ss_pred             CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CCEEEEccccc-----ccC
Confidence            479999999999999999875  4799999965 99999999988863             22344444321     125


Q ss_pred             CCccEEEEeccccCC-----cChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAE-----HLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~-----~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ++||+|+++++++..     .....++....++|+|||.++|+...
T Consensus       260 ~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        260 GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            689999999988652     34688999999999999999887754

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.50  E-value=5.5e-13  Score=109.18  Aligned_cols=104  Identities=21%  Similarity=0.222  Sum_probs=84.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CC--eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GC--NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~--~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||||||+|..++.+++. +.  +|+++|++ ++++.|+++....+            ..++++...|+...   +
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g------------~~~v~~~~~d~~~l---~  141 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG------------YTNVEFRLGEIEAL---P  141 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC------------CCCEEEEEcchhhC---C
Confidence            6789999999999988877754 44  59999995 59999999887665            23677777776533   2


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..++.||+|+++.++++..+...+++.+.++|+|||.++++..
T Consensus       142 ~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~  184 (272)
T PRK11873        142 VADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV  184 (272)
T ss_pred             CCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            3356899999999888888899999999999999999998764

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.49  E-value=7.4e-13  Score=107.44  Aligned_cols=127  Identities=14%  Similarity=0.138  Sum_probs=89.8

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +.+|||+|||+|.+++.++..  +.+|+++|++ .+++.|++|+..++               +++.+.|+.+... ...
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---------------~~~~~~D~~~~l~-~~~  150 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---------------GTVHEGDLYDALP-TAL  150 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---------------CEEEEeechhhcc-hhc
Confidence            458999999999999999865  4579999995 59999999998763               2566677653211 111


Q ss_pred             CCCccEEEEeccccCCc--------------------------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHH
Q 029065          120 APPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM  173 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~--------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~  173 (199)
                      .++||+|++++|+....                          .+..++....++|+|+|.+++.......   ..+...
T Consensus       151 ~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~---~~v~~~  227 (251)
T TIGR03704       151 RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQA---PLAVEA  227 (251)
T ss_pred             CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchH---HHHHHH
Confidence            35799999999875321                          1457888888999999999988765433   234444


Q ss_pred             HH-hCCeEEEecCCCc
Q 029065          174 WK-SNFNVKLVPKAKE  188 (199)
Q Consensus       174 ~~-~~~~v~~~~~~~~  188 (199)
                      +. .+|....+....+
T Consensus       228 l~~~g~~~~~~~~~~~  243 (251)
T TIGR03704       228 FARAGLIARVASSEEL  243 (251)
T ss_pred             HHHCCCCceeeEcccc
Confidence            43 4677766655443

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.49  E-value=4e-13  Score=108.90  Aligned_cols=118  Identities=21%  Similarity=0.316  Sum_probs=85.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++++|||+|||+|.+++.+++.|+. |+++|+++ +++.|++|+..++.           ...+.+..           
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~-----------~~~~~~~~-----------  175 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGV-----------ELNVYLPQ-----------  175 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEcc-----------
Confidence            46789999999999999999988886 99999955 99999999988753           11222211           


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  185 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~  185 (199)
                      .+.+||+|+++-.   ...+..++..+.++|+|||.++++......  .+.+.+.+. .+|++.....
T Consensus       176 ~~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lilsgi~~~~--~~~v~~~l~~~Gf~~~~~~~  238 (250)
T PRK00517        176 GDLKADVIVANIL---ANPLLELAPDLARLLKPGGRLILSGILEEQ--ADEVLEAYEEAGFTLDEVLE  238 (250)
T ss_pred             CCCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEEEECcHhh--HHHHHHHHHHCCCEEEEEEE
Confidence            0127999998732   234677889999999999999998765433  244555553 4688765443

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.49  E-value=3.6e-13  Score=107.03  Aligned_cols=103  Identities=17%  Similarity=0.144  Sum_probs=85.0

Q ss_pred             CcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           44 KRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++|||||||+|..+..++..  +.+|+++|++. +++.+++++...+.           ..++++...|+....    ..
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----------~~~i~~~~~d~~~~~----~~   65 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----------QGRIRIFYRDSAKDP----FP   65 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC----CC
Confidence            47999999999999888876  36799999955 99999998876653           346788887775331    13


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +.||+|++..++++..+...+++.+.++|+|||.+++....
T Consensus        66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            58999999999999889999999999999999999988753

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.48  E-value=7.1e-13  Score=109.38  Aligned_cols=104  Identities=15%  Similarity=0.197  Sum_probs=81.7

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +.+|||+|||+|.+++.+++.  +.+|+++|+++ +++.|++|+..++.           ..++++...|+...  .  .
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----------~~~i~~~~~D~~~~--~--~  186 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIQSDLFAA--L--P  186 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhc--c--C
Confidence            468999999999999999976  46899999955 99999999988863           24688888887432  1  2


Q ss_pred             CCCccEEEEeccccCCc-------------------------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .+.||+|++++|+....                         .+..++..+.++|+|||.+++....
T Consensus       187 ~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~  253 (284)
T TIGR03533       187 GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN  253 (284)
T ss_pred             CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            35799999998864321                         2366788888999999998887654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.47  E-value=3.5e-13  Score=109.03  Aligned_cols=105  Identities=16%  Similarity=0.251  Sum_probs=83.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHh----hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           42 KGKRVIELGAGCGVAGFGMAL----LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~----~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+.+|||||||+|..+..+++    .+.+|+++|+++ |++.|++++..++.           ..++++...|+....  
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----------~~~v~~~~~d~~~~~--  122 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDIA--  122 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCChhhCC--
Confidence            568999999999999888876    257899999954 99999999877642           236788877764321  


Q ss_pred             cccCCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                         .+.+|+|+++.++++..  ....+++.+.+.|+|||.+++++...
T Consensus       123 ---~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~  167 (247)
T PRK15451        123 ---IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  167 (247)
T ss_pred             ---CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence               24699999988776643  45789999999999999999998654

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.47  E-value=1.2e-12  Score=112.07  Aligned_cols=122  Identities=18%  Similarity=0.195  Sum_probs=87.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|.+++.+++.  +++|+++|+++ +++.|++|+..++.             ++++.+.|+.....  .
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-------------rV~fi~gDl~e~~l--~  315 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-------------RVEFAHGSWFDTDM--P  315 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-------------cEEEEEcchhcccc--c
Confidence            4568999999999999998864  56799999955 99999999987742             67888888854321  1


Q ss_pred             cCCCccEEEEeccccCCc-------------------------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHH
Q 029065          119 VAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM  173 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~  173 (199)
                      ..++||+|++|+|+....                         .+..+++.+.++|+|+|.+++.......+....++..
T Consensus       316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~  395 (423)
T PRK14966        316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAE  395 (423)
T ss_pred             cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHH
Confidence            235799999999864321                         2457778888899999998876655444333333333


Q ss_pred             HHhCCeE
Q 029065          174 WKSNFNV  180 (199)
Q Consensus       174 ~~~~~~v  180 (199)
                        .+|..
T Consensus       396 --~Gf~~  400 (423)
T PRK14966        396 --NGFSG  400 (423)
T ss_pred             --CCCcE
Confidence              35644

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.45  E-value=1.5e-12  Score=105.70  Aligned_cols=98  Identities=16%  Similarity=0.160  Sum_probs=79.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||||||+|..+..++..  +.+|+++|+++ +++.++++.                 .++.+...|.....    
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----------------~~~~~~~~d~~~~~----   89 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----------------PDCQFVEADIASWQ----   89 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------------CCCeEEECchhccC----
Confidence            5689999999999999999876  56799999955 998887753                 13455555554221    


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..++||+|+++.++++..+...+++.+.+.|+|||.+++..+
T Consensus        90 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         90 PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECC
Confidence            245899999999999988999999999999999999988754

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.45  E-value=2.3e-12  Score=103.87  Aligned_cols=121  Identities=19%  Similarity=0.269  Sum_probs=87.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.+|||+|||+|..++.++..  +.+|+++|++ .+++.++.++..++.            .++++...|+...    .
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~----~  150 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL------------DNVTFLQSDWFEP----L  150 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhcc----C
Confidence            3568999999999999999976  4579999995 499999999887753            3678888777542    1


Q ss_pred             cCCCccEEEEeccccCCcC--------------------------hHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHH
Q 029065          119 VAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ  172 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~--------------------------~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~  172 (199)
                      ..++||+|++++++.....                          +..+++.+.++|+|||.+++............+++
T Consensus       151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~  230 (251)
T TIGR03534       151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFE  230 (251)
T ss_pred             cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHH
Confidence            2468999999988754221                          24678889999999999988765433332333333


Q ss_pred             HHHhCCeE
Q 029065          173 MWKSNFNV  180 (199)
Q Consensus       173 ~~~~~~~v  180 (199)
                      .  .+|+.
T Consensus       231 ~--~gf~~  236 (251)
T TIGR03534       231 A--AGFAD  236 (251)
T ss_pred             h--CCCCc
Confidence            2  45643

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.45  E-value=1.1e-12  Score=104.96  Aligned_cols=108  Identities=19%  Similarity=0.211  Sum_probs=86.9

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..++++|||||||+|..+..+++.+++|+++|.++ +++.+++++...+.             .+++...++....  ..
T Consensus        46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~~~--~~  110 (233)
T PRK05134         46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL-------------KIDYRQTTAEELA--AE  110 (233)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC-------------ceEEEecCHHHhh--hh
Confidence            34678999999999999999999899999999954 88899888766532             4566665554322  11


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..+.||+|+++.++.+..+...+++.+.++|+|+|.++++...+
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~  154 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR  154 (233)
T ss_pred             cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence            24689999999999998899999999999999999999987643

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.45  E-value=2.4e-12  Score=92.48  Aligned_cols=101  Identities=25%  Similarity=0.294  Sum_probs=77.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+++ +++.+++++..++.            .++++...|....  ...
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~~~~~~--~~~   84 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------------SNIVIVEGDAPEA--LED   84 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------------CceEEEecccccc--Chh
Confidence            4679999999999999999976  35799999955 99999999877652            3566666554321  112


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..+.||+|++....   .....+++.+.+.|+|||.+++..
T Consensus        85 ~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        85 SLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             hcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEEEe
Confidence            23589999986532   456799999999999999988764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.44  E-value=1.2e-12  Score=102.95  Aligned_cols=125  Identities=16%  Similarity=0.004  Sum_probs=88.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeee-CCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~-~~~~~~~  117 (199)
                      .+.+|||+|||+|..+..++..  +.+|+++|+++ +++.+++++..++            ..++++...|+ ..... .
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~------------~~~v~~~~~d~~~~l~~-~  106 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEG------------LTNLRLLCGDAVEVLLD-M  106 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcC------------CCCEEEEecCHHHHHHH-H
Confidence            4679999999999999998876  35699999955 9999999987765            34688888777 32211 1


Q ss_pred             ccCCCccEEEEeccccCCc--------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEE
Q 029065          118 AVAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK  181 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~--------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~  181 (199)
                      ...+.||+|+++.+..+..        ....+++.+.++|+|||.++++......  ...+++.+. .++.++
T Consensus       107 ~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~--~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        107 FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGY--AEYMLEVLSAEGGFLV  177 (202)
T ss_pred             cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHH--HHHHHHHHHhCccccc
Confidence            2356899999874332111        2578999999999999999998754322  334444443 455554

>TIGR00740 methyltransferase, putative

Probab=99.44  E-value=9.6e-13  Score=105.85  Aligned_cols=106  Identities=15%  Similarity=0.122  Sum_probs=83.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh----CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~----g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+.+|||+|||+|..+..+++.    +++|+++|++ ++++.|++++...+.           ..++++...|+....  
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~--  119 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRHVE--  119 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhCC--
Confidence            5679999999999999888864    5679999995 599999998765431           236788887775432  


Q ss_pred             cccCCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          117 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                         .+.+|+|+++.++++..  ....+++.+.+.|+|||.++++++.+.
T Consensus       120 ---~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~  165 (239)
T TIGR00740       120 ---IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF  165 (239)
T ss_pred             ---CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence               24689999988876643  568899999999999999999987653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.44  E-value=2.4e-12  Score=102.02  Aligned_cols=146  Identities=16%  Similarity=0.142  Sum_probs=95.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCC---CCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNP---GSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||.|..++++|.+|.+|+++|+++ +++.+...   ++.....-+.   .-.....+++.+.|+.+...  
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~--  108 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA--  108 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCCCc--
Confidence            567999999999999999999999999999965 88865332   1111000000   00012467888888765431  


Q ss_pred             ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEE-EEEEEec-----Chh--H-HHHHHHHHHhCCeEEEecCC
Q 029065          118 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTI-LLGYEIR-----STS--V-HEQMLQMWKSNFNVKLVPKA  186 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i-~i~~~~~-----~~~--~-~~~~~~~~~~~~~v~~~~~~  186 (199)
                      ...+.||.|+-..++.+  .+....+++.+.++|+|||.+ +++....     .+.  . ...+.+.+...|+++.+...
T Consensus       109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~~~~~~eL~~~f~~~~~i~~~~~~  188 (213)
T TIGR03840       109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPFSVSPAEVEALYGGHYEIELLESR  188 (213)
T ss_pred             ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCCCCCHHHHHHHhcCCceEEEEeec
Confidence            11357999998877665  445677999999999999974 4433221     111  1 33455555567899888887


Q ss_pred             CcCccc
Q 029065          187 KESTMW  192 (199)
Q Consensus       187 ~~~~~~  192 (199)
                      ..+++.
T Consensus       189 ~~~~~~  194 (213)
T TIGR03840       189 DVLEDN  194 (213)
T ss_pred             cccccC
Confidence            777443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.44  E-value=4.5e-13  Score=103.39  Aligned_cols=100  Identities=20%  Similarity=0.244  Sum_probs=77.0

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065           44 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  122 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  122 (199)
                      .++||+|||.|.++..||.++.+++++|+++ +++.|++.+..              .+++++.+.++...    .+.++
T Consensus        45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~--------------~~~V~~~~~dvp~~----~P~~~  106 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG--------------LPHVEWIQADVPEF----WPEGR  106 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---------------SSEEEEES-TTT-------SS-
T ss_pred             ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC--------------CCCeEEEECcCCCC----CCCCC
Confidence            4799999999999999999988899999955 99999988653              23788888887543    24679


Q ss_pred             ccEEEEeccccCCc---ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          123 FDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       123 fD~Ii~~~~~~~~~---~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ||+|+.++++|+..   ++..++..+...|+|||.++++...
T Consensus       107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen  107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            99999999999865   4667889999999999999998753

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.44  E-value=1.8e-12  Score=107.04  Aligned_cols=107  Identities=16%  Similarity=0.206  Sum_probs=83.3

Q ss_pred             CcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           44 KRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .+|||+|||+|.+++.++...  .+|+++|++. +++.|++|+..++.           ..++++...|+....    ..
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----------~~~v~~~~~d~~~~~----~~  180 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----------EHRVEFIQSNLFEPL----AG  180 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhccC----cC
Confidence            689999999999999999864  5799999954 99999999988763           235888888885421    12


Q ss_pred             CCccEEEEeccccCCc-------------------------ChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065          121 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRSTS  165 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~  165 (199)
                      .+||+|++++|+....                         .+..++....++|+|||.+++........
T Consensus       181 ~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~  250 (284)
T TIGR00536       181 QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQK  250 (284)
T ss_pred             CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHH
Confidence            3799999998764321                         35678888889999999988877654443

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=4.8e-12  Score=96.75  Aligned_cols=79  Identities=34%  Similarity=0.483  Sum_probs=68.6

Q ss_pred             CCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           37 CPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ....++|++|+|+|||||.+++.++.+|++ |+++|+ +++++.+++|+...             ...+++...|..+. 
T Consensus        40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------------~g~v~f~~~dv~~~-  105 (198)
T COG2263          40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------------LGDVEFVVADVSDF-  105 (198)
T ss_pred             HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------------CCceEEEEcchhhc-
Confidence            567789999999999999999999999986 999999 66999999999874             45789988888644 


Q ss_pred             cccccCCCccEEEEeccccC
Q 029065          115 HIKAVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~  134 (199)
                           .++||.++.|+|+-.
T Consensus       106 -----~~~~dtvimNPPFG~  120 (198)
T COG2263         106 -----RGKFDTVIMNPPFGS  120 (198)
T ss_pred             -----CCccceEEECCCCcc
Confidence                 578999999999854

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.44  E-value=3.9e-14  Score=105.34  Aligned_cols=150  Identities=26%  Similarity=0.308  Sum_probs=107.8

Q ss_pred             ceeeccccccccCccCCCCCCCCcEEEeCCC-cChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCC
Q 029065           22 QLQFSQEKNCRKGRFCPSKLKGKRVIELGAG-CGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGS   97 (199)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~VLdlGcG-~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~   97 (199)
                      .++.+......+..-+|..+.|++|||||.| +|+.|+.+|...  ..|..+|.++ .+++.+...-.|..         
T Consensus         9 ciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~---------   79 (201)
T KOG3201|consen    9 CIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMA---------   79 (201)
T ss_pred             EecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccc---------
Confidence            3344444444445557888899999999999 599999998763  3499999865 88888877666532         


Q ss_pred             CCCCcE-EEEEeeeCCC-ccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH
Q 029065           98 DLLGSI-QAVELDWGNE-DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  175 (199)
Q Consensus        98 ~~~~~i-~~~~~d~~~~-~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~  175 (199)
                         +.+ ++..+.|..- ...+.....||+|+++|++|..+...+++++++++|+|.|..++..|.|.. ..+.|++...
T Consensus        80 ---s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~-sL~kF~de~~  155 (201)
T KOG3201|consen   80 ---SSLTSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ-SLQKFLDEVG  155 (201)
T ss_pred             ---cccceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc-hHHHHHHHHH
Confidence               122 2223333211 112222458999999999999999999999999999999998887776655 4788888875


Q ss_pred             -hCCeEEEec
Q 029065          176 -SNFNVKLVP  184 (199)
Q Consensus       176 -~~~~v~~~~  184 (199)
                       .+|.|....
T Consensus       156 ~~gf~v~l~e  165 (201)
T KOG3201|consen  156 TVGFTVCLEE  165 (201)
T ss_pred             hceeEEEecc
Confidence             478886544

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.43  E-value=1.7e-12  Score=101.76  Aligned_cols=107  Identities=15%  Similarity=0.131  Sum_probs=82.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhC-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLG-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++.+|||+|||+|.+++.++..+ ++|+++|.+ ++++.+++|++.++.            .++++.+.|+....  ..
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------------~~v~~~~~D~~~~l--~~  117 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------------GNARVVNTNALSFL--AQ  117 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEEchHHHHH--hh
Confidence            467899999999999999755444 569999994 599999999988863            36788887775321  11


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHh--cCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~--l~~~g~i~i~~~~~  162 (199)
                      ...+||+|++++| |.......+++.+...  ++|++.+|+.....
T Consensus       118 ~~~~fDlV~~DPP-y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~  162 (199)
T PRK10909        118 PGTPHNVVFVDPP-FRKGLLEETINLLEDNGWLADEALIYVESEVE  162 (199)
T ss_pred             cCCCceEEEECCC-CCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence            2346999999988 5667778888888775  78999999987654

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.42  E-value=1e-11  Score=97.29  Aligned_cols=104  Identities=19%  Similarity=0.275  Sum_probs=79.2

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ..++.+|||+|||+|.+++.+++.   +.+|+++|.+ ++++.+++|+..++.           ..++.+...|..+.  
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----------~~~v~~~~~d~~~~--  104 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----------LNNIVLIKGEAPEI--  104 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CCCeEEEEechhhh--
Confidence            346789999999999999999864   3579999994 599999999987753           24677776665432  


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .....+.||+|++..   ....+..+++.+.+.|+|||.+++..
T Consensus       105 l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (198)
T PRK00377        105 LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDA  145 (198)
T ss_pred             HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEe
Confidence            122236899999853   34567889999999999999987643

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.42  E-value=2.7e-12  Score=107.00  Aligned_cols=103  Identities=16%  Similarity=0.203  Sum_probs=80.8

Q ss_pred             CcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           44 KRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .+|||+|||+|.+++.++..  +.+|+++|++. +++.|++|+..++.           ..++++.+.|+...  .  ..
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----------~~~i~~~~~D~~~~--l--~~  199 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIESDLFAA--L--PG  199 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCcEEEEECchhhh--C--CC
Confidence            68999999999999999976  45799999955 99999999988763           23688888887432  1  23


Q ss_pred             CCccEEEEeccccCCc-------------------------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ++||+|++++|+....                         .+..+++.+.++|+|||.+++....
T Consensus       200 ~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~  265 (307)
T PRK11805        200 RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN  265 (307)
T ss_pred             CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            5799999998764311                         2357788889999999999886554

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.41  E-value=5.5e-13  Score=109.51  Aligned_cols=143  Identities=21%  Similarity=0.174  Sum_probs=92.2

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+|++||++.|-||..|+.++..||. |+.+|.+. +++++++|+..|+..          ..++++...|+........
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----------~~~~~~~~~Dvf~~l~~~~  191 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----------LDRHRFIQGDVFKFLKRLK  191 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----------CTCEEEEES-HHHHHHHHH
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHHHHHHh
Confidence            36899999999999999999999985 99999966 999999999999853          3578888877653221111


Q ss_pred             cCCCccEEEEeccccCCc------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh-CCeEEEecCCCcCcc
Q 029065          119 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPKAKESTM  191 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  191 (199)
                      ..++||+||+.+|-|...      ++.+++..+.++|+|||.++++.....-. .+.|.+.+.+ .-+++.+..-..|++
T Consensus       192 ~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~-~~~l~~~~~~~a~~~~~~~~~~~p~d  270 (286)
T PF10672_consen  192 KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS-PDFLLEAVAEAAREVEFIERLGQPPD  270 (286)
T ss_dssp             HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS--HHHHHHHHHHHHHHCEEEEEEE----
T ss_pred             cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC-HHHHHHHHHHhCccceEeeeeccccc
Confidence            246899999998887633      57788889999999999988777654332 2234443321 224444455556666


Q ss_pred             cCC
Q 029065          192 WGN  194 (199)
Q Consensus       192 ~~~  194 (199)
                      |.+
T Consensus       271 f~~  273 (286)
T PF10672_consen  271 FPD  273 (286)
T ss_dssp             ---
T ss_pred             ccc
Confidence            644

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.41  E-value=2.9e-12  Score=107.79  Aligned_cols=102  Identities=15%  Similarity=0.097  Sum_probs=80.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.+|||||||+|..++.+++.  +.+|+++|.++ +++.++++...+               ++++...|..+.   ..
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~---------------~i~~i~gD~e~l---p~  174 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---------------ECKIIEGDAEDL---PF  174 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc---------------CCeEEeccHHhC---CC
Confidence            4579999999999998888764  45799999954 999988875422               456666665432   23


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..+.||+|+++.++++..+...+++.+.++|+|||.+++..+.
T Consensus       175 ~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~  217 (340)
T PLN02490        175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPV  217 (340)
T ss_pred             CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEec
Confidence            3568999999999988888999999999999999998887543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.41  E-value=4.2e-12  Score=112.39  Aligned_cols=109  Identities=20%  Similarity=0.278  Sum_probs=82.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|.+++.++..  +++|+++|+++ +++.|++|+..++.           ..++++...|+...    .
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----------~~~v~~~~~D~~~~----~  202 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----------TDRIQIIHSNWFEN----I  202 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----------ccceeeeecchhhh----C
Confidence            3468999999999999988864  56899999955 99999999987753           24678888777432    1


Q ss_pred             cCCCccEEEEeccccCCc--------------------------ChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065          119 VAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIRSTS  165 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~--------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~  165 (199)
                      ..++||+|++++|+....                          .+..+++.+.++|+|||.+++........
T Consensus       203 ~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~  275 (506)
T PRK01544        203 EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEE  275 (506)
T ss_pred             cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHH
Confidence            235799999998875421                          24556778888999999998876544443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.41  E-value=3.2e-12  Score=101.49  Aligned_cols=109  Identities=21%  Similarity=0.213  Sum_probs=86.9

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ...+.+|||+|||+|..+..++..+++|+++|.+. +++.+++++..++.            .++.+...++.....  .
T Consensus        43 ~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~~--~  108 (224)
T TIGR01983        43 PLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL------------LKIEYRCTSVEDLAE--K  108 (224)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEeCCHHHhhc--C
Confidence            34688999999999999999998888999999954 98999988876542            145666655543211  1


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..++||+|+++.++++..+...+++.+.++|+++|.++++...+
T Consensus       109 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~  152 (224)
T TIGR01983       109 GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINR  152 (224)
T ss_pred             CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            13689999999999999999999999999999999998876543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.40  E-value=5.6e-13  Score=93.19  Aligned_cols=92  Identities=24%  Similarity=0.293  Sum_probs=71.2

Q ss_pred             EEEeCCCcChHHHHHHhhC-----CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           46 VIELGAGCGVAGFGMALLG-----CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        46 VLdlGcG~G~~sl~la~~g-----~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      |||+|||+|.....++...     .+++++|+++ +++.++++....+.             ++++.+.|+.+.   ...
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-------------~~~~~~~D~~~l---~~~   64 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-------------KVRFVQADARDL---PFS   64 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-------------TSEEEESCTTCH---HHH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-------------ceEEEECCHhHC---ccc
Confidence            7999999999999999774     6799999955 99999988766532             678888887543   345


Q ss_pred             CCCccEEEEecc-ccC--CcChHHHHHHHHHhcCCCc
Q 029065          120 APPFDYIIGTDV-VYA--EHLLEPLLQTIFALSGPKT  153 (199)
Q Consensus       120 ~~~fD~Ii~~~~-~~~--~~~~~~~l~~l~~~l~~~g  153 (199)
                      .++||+|+++.. +.+  ......+++.+.++|+|||
T Consensus        65 ~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   65 DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            679999999644 544  4568999999999999987

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.40  E-value=6e-12  Score=98.28  Aligned_cols=121  Identities=12%  Similarity=0.004  Sum_probs=86.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.+|||||||+|..+..++..  ...|+++|++. +++.|++++...+            ..++++.+.|.........
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~------------l~ni~~i~~d~~~~~~~~~   83 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG------------LKNLHVLCGDANELLDKFF   83 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC------------CCCEEEEccCHHHHHHhhC
Confidence            3568999999999999999977  44699999954 9999999887765            3478888888753321112


Q ss_pred             cCCCccEEEEeccccCCc--------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh
Q 029065          119 VAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS  176 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~--------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~  176 (199)
                      ..+.+|.|+++-+--+..        ....+++.+.++|+|||.+++.......  .+.+++.+..
T Consensus        84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~--~~~~~~~~~~  147 (194)
T TIGR00091        84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPL--FEDMLKVLSE  147 (194)
T ss_pred             CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHH--HHHHHHHHHh
Confidence            245899999874432211        1267999999999999999988755422  3344455443

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.40  E-value=5.2e-12  Score=100.78  Aligned_cols=106  Identities=16%  Similarity=0.143  Sum_probs=85.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC---CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|..+..++..+   .+|+++|+++ +++.+++++..++.           ..++.+...|+.+..   
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---  116 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----------SGNVEFVQGDAEALP---  116 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----------ccCeEEEecccccCC---
Confidence            56899999999999999998776   6799999954 99999988765432           235777777775432   


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ...+.||+|+++..+.+..+...+++.+.++|+|||.+++....
T Consensus       117 ~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~  160 (239)
T PRK00216        117 FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS  160 (239)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence            23468999999988888889999999999999999998887653

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.40  E-value=4.6e-12  Score=103.71  Aligned_cols=106  Identities=21%  Similarity=0.257  Sum_probs=78.0

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHH--HHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLL--KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..++|++|||||||.|..+..++..|++ |+|+|.+. .+-+.  .+.+..+             ...+....+.++   
T Consensus       112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~-------------~~~~~~lplgvE---  175 (315)
T PF08003_consen  112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQ-------------DPPVFELPLGVE---  175 (315)
T ss_pred             CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCC-------------CccEEEcCcchh---
Confidence            3679999999999999999999999997 99999743 32222  1222111             112222222332   


Q ss_pred             cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          115 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .++. .+.||+|++-+++||..++-..+..++..|++||.+++....
T Consensus       176 ~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlv  221 (315)
T PF08003_consen  176 DLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLV  221 (315)
T ss_pred             hccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEee
Confidence            2233 578999999999999999999999999999999998877643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.38  E-value=1e-11  Score=101.60  Aligned_cols=105  Identities=20%  Similarity=0.289  Sum_probs=80.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|.+++.++...  .+|+++|+++ +++.+++|+....            ..++.+...|+....    
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~------------~~~i~~~~~d~~~~~----  171 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGL------------GARVEFLQGDWFEPL----  171 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCC------------CCcEEEEEccccCcC----
Confidence            56799999999999999999875  6799999955 9999999987221            346888888874321    


Q ss_pred             cCCCccEEEEeccccCCc--------------------------ChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~--------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..++||+|++++++....                          .+..++..+.++|+|||.+++.....
T Consensus       172 ~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~  241 (275)
T PRK09328        172 PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYD  241 (275)
T ss_pred             CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECch
Confidence            146899999998864321                          13567788889999999998865443

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.38  E-value=4.6e-12  Score=100.95  Aligned_cols=102  Identities=16%  Similarity=0.099  Sum_probs=81.2

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .++++|||+|||+|..+..++..+.  +|+++|++. +++.++....                .++.+...|.....   
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------------~~~~~~~~d~~~~~---   93 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------------ENVQFICGDAEKLP---   93 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------------CCCeEEecchhhCC---
Confidence            4467999999999999999998764  489999955 7777766532                14566666665332   


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ...+.||+|+++.++++..++..++..+.++|+|||.++++...
T Consensus        94 ~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~  137 (240)
T TIGR02072        94 LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFG  137 (240)
T ss_pred             CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            23568999999999999989999999999999999999988654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.38  E-value=3.9e-12  Score=109.01  Aligned_cols=99  Identities=17%  Similarity=0.169  Sum_probs=78.9

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      -++.+|||||||+|.+++.+++. |++|+++|+++ +++.+++++...               .+++...|+...     
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l---------------~v~~~~~D~~~l-----  225 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL---------------PVEIRLQDYRDL-----  225 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC---------------eEEEEECchhhc-----
Confidence            35789999999999999999875 78999999955 999998876321               356666565321     


Q ss_pred             cCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                       .++||.|++..++.+.  ..+..+++.+.++|+|||.+++...
T Consensus       226 -~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        226 -NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             -CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence             4689999999988875  4568999999999999999988653

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.37  E-value=5.3e-12  Score=97.63  Aligned_cols=114  Identities=18%  Similarity=0.131  Sum_probs=89.5

Q ss_pred             cEEEeCCCcChHHHHHH-hhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEE-EEEeeeCCCccccccCC
Q 029065           45 RVIELGAGCGVAGFGMA-LLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQ-AVELDWGNEDHIKAVAP  121 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la-~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~d~~~~~~~~~~~~  121 (199)
                      .|||+|||||..--+.- +.+.+|+++|.++ |-+.+...+..+.            ..++. ++..+-++..++  .++
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k------------~~~~~~fvva~ge~l~~l--~d~  144 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK------------PLQVERFVVADGENLPQL--ADG  144 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc------------CcceEEEEeechhcCccc--ccC
Confidence            78999999998766665 4688999999966 9899988887763            22443 666666554433  478


Q ss_pred             CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh-hHHHHHHH
Q 029065          122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQ  172 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~-~~~~~~~~  172 (199)
                      ++|.|++.=+++...++.+.++.+.++|+|||++++....+.. .++..+++
T Consensus       145 s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q  196 (252)
T KOG4300|consen  145 SYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQ  196 (252)
T ss_pred             CeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHH
Confidence            9999999999999999999999999999999999999887654 33444433

>PRK08317 hypothetical protein; Provisional

Probab=99.37  E-value=1e-11  Score=98.80  Aligned_cols=104  Identities=20%  Similarity=0.148  Sum_probs=82.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhC---CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++.+|||+|||+|..+..++...   ++|+++|.++ +++.++++....             ..++.+...|.....  
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------------~~~~~~~~~d~~~~~--   82 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------------GPNVEFVRGDADGLP--   82 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------------CCceEEEecccccCC--
Confidence            356899999999999999888753   5799999954 888888773222             235777776664332  


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                       ...+.||+|++..++.+..++..+++.+.++|+|||.+++..+
T Consensus        83 -~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         83 -FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             -CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence             2356899999999999989999999999999999999988764

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.36  E-value=1.3e-11  Score=98.04  Aligned_cols=144  Identities=17%  Similarity=0.115  Sum_probs=92.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCC---CCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNP---GSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||.|..++++|..|.+|+++|+++ +++.+..   .+++.......   .-....+|++.+.|+.....  
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~--  111 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA--  111 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCc--
Confidence            467999999999999999999999999999965 8887632   22211000000   00113467777777754421  


Q ss_pred             ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEE-ec-----Chh---HHHHHHHHHHhCCeEEEecCC
Q 029065          118 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE-IR-----STS---VHEQMLQMWKSNFNVKLVPKA  186 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~-~~-----~~~---~~~~~~~~~~~~~~v~~~~~~  186 (199)
                      ...+.||.|+-..++.+  .+....++..+.++|+|||.+++... ..     .+.   ..+.+.+.+...|+++.+...
T Consensus       112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~~~~~el~~~~~~~~~i~~~~~~  191 (218)
T PRK13255        112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFSVSDEEVEALYAGCFEIELLERQ  191 (218)
T ss_pred             ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCCCCHHHHHHHhcCCceEEEeeec
Confidence            12357999998877665  45678999999999999996444222 11     111   133444445545888877765


Q ss_pred             CcCc
Q 029065          187 KEST  190 (199)
Q Consensus       187 ~~~~  190 (199)
                      ....
T Consensus       192 ~~~~  195 (218)
T PRK13255        192 DVLE  195 (218)
T ss_pred             cccc
Confidence            5443

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.36  E-value=7.6e-12  Score=97.39  Aligned_cols=110  Identities=17%  Similarity=0.134  Sum_probs=78.4

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .+++++|||++||+|.+++.++.+|+ .|+++|.+ .+++.+++|++.++.           ..++++...|........
T Consensus        47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----------~~~~~~~~~D~~~~l~~~  115 (189)
T TIGR00095        47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----------GEQAEVVRNSALRALKFL  115 (189)
T ss_pred             hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------cccEEEEehhHHHHHHHh
Confidence            46789999999999999999999998 49999995 599999999998863           235677777764321111


Q ss_pred             ccCCC-ccEEEEeccccCCcChHHHHHHHHH--hcCCCcEEEEEEEe
Q 029065          118 AVAPP-FDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~-fD~Ii~~~~~~~~~~~~~~l~~l~~--~l~~~g~i~i~~~~  161 (199)
                      ..... ||+|+. ||.|.......++..+..  +++++|.+++....
T Consensus       116 ~~~~~~~dvv~~-DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       116 AKKPTFDNVIYL-DPPFFNGALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             hccCCCceEEEE-CcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            11223 566555 555666777788877755  57788876665443

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.36  E-value=6.4e-12  Score=99.73  Aligned_cols=101  Identities=22%  Similarity=0.311  Sum_probs=79.2

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..++.+|||+|||+|..+..++..+.+|+++|+++ +++.|++++..++.           ..++.+...|+...     
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~~-----  116 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV-----------AGNVEFEVNDLLSL-----  116 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChhhC-----
Confidence            45678999999999999999999888999999954 99999998866542           23677877776533     


Q ss_pred             cCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEE
Q 029065          119 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                       .+.||+|++..++++.  .....++..+.+++++++.+.+
T Consensus       117 -~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       117 -CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             -CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence             2689999999888663  3577888888888886655444

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK05785 hypothetical protein; Provisional

Probab=99.35  E-value=1.5e-11  Score=98.33  Aligned_cols=87  Identities=17%  Similarity=0.229  Sum_probs=70.6

Q ss_pred             CCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      +.+|||||||||..+..++.. +.+|+++|+++ |++.++.+.                    ...+.|..   ..+..+
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------------~~~~~d~~---~lp~~d  108 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------------DKVVGSFE---ALPFRD  108 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------------ceEEechh---hCCCCC
Confidence            679999999999999999987 67899999955 999887531                    12233433   234456


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCC
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK  152 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~  152 (199)
                      ++||+|+++..+++..+++.+++.+.++|+|.
T Consensus       109 ~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        109 KSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             CCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence            89999999999999999999999999999994

>PLN02672 methionine S-methyltransferase

Probab=99.35  E-value=1.4e-11  Score=116.01  Aligned_cols=143  Identities=17%  Similarity=0.164  Sum_probs=98.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhcccc----CCCCCCCCCcEEEEEeeeCCC
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQ----MNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      +++++|||||||+|.+++.++...  ++|+++|++. +++.|++|+..|+..-..    ........+++++.+.||.+.
T Consensus       117 ~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~  196 (1082)
T PLN02672        117 FRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGY  196 (1082)
T ss_pred             CCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhh
Confidence            456799999999999999999764  5799999955 999999999987531000    000001234789999998643


Q ss_pred             ccccccCCCccEEEEeccccCCc--------------------------------------ChHHHHHHHHHhcCCCcEE
Q 029065          114 DHIKAVAPPFDYIIGTDVVYAEH--------------------------------------LLEPLLQTIFALSGPKTTI  155 (199)
Q Consensus       114 ~~~~~~~~~fD~Ii~~~~~~~~~--------------------------------------~~~~~l~~l~~~l~~~g~i  155 (199)
                      .  .....+||+||+|+|+-...                                      .+..++....++|+|||.+
T Consensus       197 ~--~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l  274 (1082)
T PLN02672        197 C--RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIM  274 (1082)
T ss_pred             c--cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEE
Confidence            2  11123699999999873211                                      1356777888899999999


Q ss_pred             EEEEEecChhHHH-HHHHHHHhCCeEEEecCCC
Q 029065          156 LLGYEIRSTSVHE-QMLQMWKSNFNVKLVPKAK  187 (199)
Q Consensus       156 ~i~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~  187 (199)
                      ++....+..+... .+++.  .+|....+...+
T Consensus       275 ~lEiG~~q~~~v~~~l~~~--~gf~~~~~~~~~  305 (1082)
T PLN02672        275 IFNMGGRPGQAVCERLFER--RGFRITKLWQTK  305 (1082)
T ss_pred             EEEECccHHHHHHHHHHHH--CCCCeeEEeeeh
Confidence            9988877665443 34443  567776655554

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.34  E-value=1.3e-11  Score=107.78  Aligned_cols=127  Identities=14%  Similarity=0.178  Sum_probs=91.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-cccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~  119 (199)
                      ++.+|||+|||+|.+++.++..+.+|+++|+++ +++.|++|+..++.            .++++...|+.+... ....
T Consensus       297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~------------~~v~~~~~d~~~~l~~~~~~  364 (443)
T PRK13168        297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL------------DNVTFYHANLEEDFTDQPWA  364 (443)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEeChHHhhhhhhhh
Confidence            467999999999999999999988999999955 99999999988863            368888888854321 1122


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecCC
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA  186 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (199)
                      ...||+|+++++.-.   ...++..+.+ +++++.+|++-.....  -.++......+|+++.+..-
T Consensus       365 ~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp~tl--aRDl~~L~~~gY~l~~i~~~  425 (443)
T PRK13168        365 LGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNPATL--ARDAGVLVEAGYRLKRAGML  425 (443)
T ss_pred             cCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeChHHh--hccHHHHhhCCcEEEEEEEe
Confidence            357999999877533   3466676666 5889999998754321  12222222567888877543

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.34  E-value=1.1e-11  Score=98.33  Aligned_cols=99  Identities=16%  Similarity=0.168  Sum_probs=75.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC---eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~---~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++.+|||||||+|..+..+++...   +|+++|+ +++++.|++++..++            ..++++...|.....  
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g------------~~~v~~~~~d~~~~~--  141 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG------------LDNVIVIVGDGTQGW--  141 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC------------CCCeEEEECCcccCC--
Confidence            3678999999999999999998744   4999998 559999999998876            346788877764321  


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                       ....+||+|++....      ..+...+.+.|+|||.+++...
T Consensus       142 -~~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       142 -EPLAPYDRIYVTAAG------PKIPEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             -cccCCCCEEEEcCCc------ccccHHHHHhcCcCcEEEEEEc
Confidence             123589999987543      2344567888999999887643

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.32  E-value=2.3e-11  Score=101.33  Aligned_cols=104  Identities=15%  Similarity=0.192  Sum_probs=83.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||||||+|..++.+++..  .+++++|.+++++.+++++...+.           .+++++...|.....     
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl-----------~~rv~~~~~d~~~~~-----  212 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKES-----  212 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCc-----------cceEEEEecCccCCC-----
Confidence            45799999999999999999874  569999998899999999887754           347888888775321     


Q ss_pred             CCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .+.+|+|+.+.++++..  ....+++.+.+.|+|||.+++.+..
T Consensus       213 ~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~  256 (306)
T TIGR02716       213 YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  256 (306)
T ss_pred             CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            13479999888887643  3568999999999999999998764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.31  E-value=3e-11  Score=101.09  Aligned_cols=123  Identities=13%  Similarity=0.118  Sum_probs=88.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|.+++.++..+.+|+++|.+ ++++.|++|+..++.            .++++...|.....  ....
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l------------~~v~~~~~D~~~~~--~~~~  238 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL------------TNVQFQALDSTQFA--TAQG  238 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEcCHHHHH--HhcC
Confidence            46899999999999999999999899999995 499999999988863            46888887775332  1123


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecC
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK  185 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (199)
                      +.||+|+++++-  ......+++.+.+ +.|+.++|++-......  ..+ +.+ .+|+++.+..
T Consensus       239 ~~~D~Vv~dPPr--~G~~~~~~~~l~~-~~~~~ivyvsc~p~t~~--rd~-~~l-~~y~~~~~~~  296 (315)
T PRK03522        239 EVPDLVLVNPPR--RGIGKELCDYLSQ-MAPRFILYSSCNAQTMA--KDL-AHL-PGYRIERVQL  296 (315)
T ss_pred             CCCeEEEECCCC--CCccHHHHHHHHH-cCCCeEEEEECCcccch--hHH-hhc-cCcEEEEEEE
Confidence            479999999873  2334556666555 57888888877654321  222 233 5788876654

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.31  E-value=3.1e-11  Score=95.04  Aligned_cols=99  Identities=20%  Similarity=0.225  Sum_probs=74.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|..+..+++.   +.+|+++|++ ++++.+++|+..++.           ..++++...|.....   
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----------~~~v~~~~~d~~~~~---  137 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----------WGVVEVYHGDGKRGL---  137 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEECCcccCC---
Confidence            5679999999999999888865   3589999995 599999999887753           235777777764321   


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ....+||+|++...+.+      +.+.+.+.|+|||.+++...
T Consensus       138 ~~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        138 EKHAPFDAIIVTAAAST------IPSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             ccCCCccEEEEccCcch------hhHHHHHhcCcCcEEEEEEc
Confidence            12468999999866532      33567788999999887653

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.31  E-value=1e-10  Score=91.38  Aligned_cols=129  Identities=18%  Similarity=0.214  Sum_probs=88.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|..++.+++.  +.+|+++|.+ ++++.+++|+..++.            .++++...|....  ...
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------------~~v~~~~~d~~~~--~~~  105 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------------KNVEVIEGSAPEC--LAQ  105 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CCeEEEECchHHH--Hhh
Confidence            5679999999999999999865  4679999994 599999999987752            3577777665321  111


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh-HHHHHHHHH-HhCCeEEEecCCCc
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS-VHEQMLQMW-KSNFNVKLVPKAKE  188 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~-~~~~~~~~~-~~~~~v~~~~~~~~  188 (199)
                      ....+|.++...    ...+..+++.+.++|+|||.+++.......- .....++.. ..++++..+...+.
T Consensus       106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (196)
T PRK07402        106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNRL  173 (196)
T ss_pred             CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhhc
Confidence            123467665532    3467899999999999999988887643221 122333333 24677776655443

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.31  E-value=4.6e-11  Score=99.76  Aligned_cols=104  Identities=17%  Similarity=0.219  Sum_probs=73.8

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|.+++.+++.|.+|+++|+++ |++.+++++......       +.....+++...|+..      .
T Consensus       143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~-------~~~~~~~~f~~~Dl~~------l  209 (315)
T PLN02585        143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAA-------LPPEVLPKFEANDLES------L  209 (315)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccc-------cccccceEEEEcchhh------c
Confidence            4678999999999999999999999999999965 999999987654210       0001245666666532      1


Q ss_pred             CCCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEE
Q 029065          120 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .+.||+|++.++++|...  ...+++.+.++ .++ .++|+.
T Consensus       210 ~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g-~liIs~  249 (315)
T PLN02585        210 SGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEK-RLIISF  249 (315)
T ss_pred             CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCC-EEEEEe
Confidence            468999999999876433  44567777654 444 445554

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.31  E-value=1.6e-11  Score=108.12  Aligned_cols=103  Identities=23%  Similarity=0.210  Sum_probs=80.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++++|||||||+|..+..++..+.+|+++|++. +++.++.   .++.           ..++.+...|..... .+...
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~-----------~~~i~~~~~d~~~~~-~~~~~  101 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGH-----------YKNVKFMCADVTSPD-LNISD  101 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhcc-----------CCceEEEEecccccc-cCCCC
Confidence            567999999999999999999888999999954 8776543   2211           246788887775322 22335


Q ss_pred             CCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEE
Q 029065          121 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ++||+|+++.++++..+  ...+++.+.++|+|||.+++.+
T Consensus       102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d  142 (475)
T PLN02336        102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRE  142 (475)
T ss_pred             CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            78999999999888554  6899999999999999998865

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.30  E-value=5.4e-11  Score=94.00  Aligned_cols=116  Identities=15%  Similarity=0.126  Sum_probs=81.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhC---CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-  116 (199)
                      .++.+|||||||+|..+..++...   .+|+++|++++          +.            ...+.+.+.|+.+.... 
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~------------~~~v~~i~~D~~~~~~~~  107 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DP------------IVGVDFLQGDFRDELVLK  107 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cC------------CCCcEEEecCCCChHHHH
Confidence            357799999999999999888763   46999998662          11            12478888888764311 


Q ss_pred             ----cccCCCccEEEEeccccCCcC-----------hHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeE
Q 029065          117 ----KAVAPPFDYIIGTDVVYAEHL-----------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       117 ----~~~~~~fD~Ii~~~~~~~~~~-----------~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v  180 (199)
                          ....+.||+|+++...+....           ...+++.+.++|+|||.+++.....  +.+..++..+...|.-
T Consensus       108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~--~~~~~~l~~l~~~f~~  184 (209)
T PRK11188        108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG--EGFDEYLREIRSLFTK  184 (209)
T ss_pred             HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC--cCHHHHHHHHHhCceE
Confidence                122568999999764444221           2568899999999999998865433  2245677777777654

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.30  E-value=3.2e-11  Score=101.50  Aligned_cols=106  Identities=19%  Similarity=0.115  Sum_probs=83.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|.+.+.++..|++|+++|++. +++.++.|+...+.            ..+++...|..+.   +...
T Consensus       182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~------------~~i~~~~~D~~~l---~~~~  246 (329)
T TIGR01177       182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGI------------EDFFVKRGDATKL---PLSS  246 (329)
T ss_pred             CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCC------------CCCeEEecchhcC---Cccc
Confidence            467999999999999999999999999999954 99999999987763            2366667666543   2235


Q ss_pred             CCccEEEEeccccCC---------cChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~---------~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      +.||+|++++|+...         .....+++.+.+.|+|||.+++..+..
T Consensus       247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~  297 (329)
T TIGR01177       247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR  297 (329)
T ss_pred             CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence            689999999876331         125789999999999999988887754

This family is found exclusively in the Archaea.

>PRK04266 fibrillarin; Provisional

Probab=99.29  E-value=9.7e-11  Score=93.57  Aligned_cols=128  Identities=17%  Similarity=0.144  Sum_probs=81.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|..++.++...  .+|+++|+++ +++.+.+++...              .++.+...|.........
T Consensus        72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------------~nv~~i~~D~~~~~~~~~  137 (226)
T PRK04266         72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------------KNIIPILADARKPERYAH  137 (226)
T ss_pred             CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------------CCcEEEECCCCCcchhhh
Confidence            57799999999999999999863  4799999954 888777665432              245666666543211111


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC------h-hHHHHHHHHH-HhCCeEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS------T-SVHEQMLQMW-KSNFNVKLVPK  185 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~------~-~~~~~~~~~~-~~~~~v~~~~~  185 (199)
                      ....||+|++.-.  .+.....+++.+.++|+|||.++|+.+.+.      + ...+...+.+ ..+|++.+...
T Consensus       138 l~~~~D~i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~  210 (226)
T PRK04266        138 VVEKVDVIYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD  210 (226)
T ss_pred             ccccCCEEEECCC--ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence            2356999986421  111224568999999999999999533221      1 1122233444 34788765443

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.29  E-value=2.7e-11  Score=95.36  Aligned_cols=95  Identities=18%  Similarity=0.173  Sum_probs=70.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|..+..++..  +.+|+++|+++ +++.|+++..                 .+.+...|..+    +.
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------------~~~~~~~d~~~----~~  101 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------------NINIIQGSLFD----PF  101 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------------CCcEEEeeccC----CC
Confidence            5678999999999999988876  57899999955 9999987531                 23455555543    23


Q ss_pred             cCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..+.||+|+++.+++|.  .....+++.+.+.++  +.++++.
T Consensus       102 ~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~--~~v~i~e  142 (204)
T TIGR03587       102 KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN--RYILIAE  142 (204)
T ss_pred             CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC--cEEEEEE
Confidence            36789999999999875  346677777777763  4555554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.29  E-value=5.3e-12  Score=97.74  Aligned_cols=110  Identities=25%  Similarity=0.311  Sum_probs=78.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-ccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~  117 (199)
                      ++|++||||.||+|.+|+.+..+||+ |+++|.+ .++..+++|++..+.           ..++.+...|..... ...
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----------~~~~~v~~~d~~~~l~~~~  109 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----------EDKIRVIKGDAFKFLLKLA  109 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------------GGGEEEEESSHHHHHHHHH
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----------CcceeeeccCHHHHHHhhc
Confidence            78999999999999999999999986 9999995 499999999987754           224677666643221 111


Q ss_pred             ccCCCccEEEEeccccCCcC-hHHHHHHHH--HhcCCCcEEEEEEEec
Q 029065          118 AVAPPFDYIIGTDVVYAEHL-LEPLLQTIF--ALSGPKTTILLGYEIR  162 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~-~~~~l~~l~--~~l~~~g~i~i~~~~~  162 (199)
                      ....+||+|++.|| |.... +..++..+.  .+|+++|.+++....+
T Consensus       110 ~~~~~fDiIflDPP-Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  110 KKGEKFDIIFLDPP-YAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HCTS-EEEEEE--S-TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             ccCCCceEEEECCC-cccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            13578999999766 55444 588898887  6789999888877655

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.29  E-value=5.1e-11  Score=94.04  Aligned_cols=103  Identities=17%  Similarity=0.170  Sum_probs=82.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC---eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC---NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~---~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|..+..+++.+.   +++++|++ .+++.++++.. .             ..++.+...|..+..   
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-------------~~~i~~~~~d~~~~~---  101 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-------------PLNIEFIQADAEALP---  101 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-------------CCCceEEecchhcCC---
Confidence            678999999999999998887654   79999995 48888887764 1             235677776665432   


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ...+.||+|+++..+.+..+...+++.+.++|+|||.+++....
T Consensus       102 ~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       102 FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            23468999999988888889999999999999999999887654

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.28  E-value=4.9e-11  Score=81.49  Aligned_cols=100  Identities=22%  Similarity=0.277  Sum_probs=78.3

Q ss_pred             cEEEeCCCcChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065           45 RVIELGAGCGVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  122 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  122 (199)
                      +|+|+|||+|..+..++. .+.+++++|.+. +++.+++......            ...+++...|+.+...  ...+.
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~   66 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------------ADNVEVLKGDAEELPP--EADES   66 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------------ccceEEEEcChhhhcc--ccCCc
Confidence            589999999999888887 456799999954 7777775332222            3467777777764432  13568


Q ss_pred             ccEEEEeccccC-CcChHHHHHHHHHhcCCCcEEEEE
Q 029065          123 FDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       123 fD~Ii~~~~~~~-~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      ||+|+++.++++ ......+++.+.+.++++|.+++.
T Consensus        67 ~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          67 FDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999999888 889999999999999999998876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.28  E-value=5.4e-11  Score=94.22  Aligned_cols=98  Identities=18%  Similarity=0.244  Sum_probs=73.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      -++.+|||+|||+|..+..+++. +  .+|+++|++ ++++.+++++...+            ..++++...|....   
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g------------~~~v~~~~gd~~~~---  139 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG------------YDNVEVIVGDGTLG---  139 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC------------CCCeEEEECCcccC---
Confidence            35789999999999999888876 3  579999995 59999999988765            34678888775422   


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .....+||+|++....      ..+...+.+.|+|||.+++..
T Consensus       140 ~~~~~~fD~I~~~~~~------~~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        140 YEENAPYDRIYVTAAG------PDIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CCcCCCcCEEEECCCc------ccchHHHHHhhCCCcEEEEEE
Confidence            1234689999986532      233456777899999987754

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.28  E-value=4e-11  Score=95.47  Aligned_cols=96  Identities=20%  Similarity=0.277  Sum_probs=73.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..+..++..+.+|+++|+++ +++.|+++....+.           ..++.+...|+..      .
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~------~  124 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGL-----------AGNITFEVGDLES------L  124 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccCcEEEEcCchh------c
Confidence            4578999999999999999999899999999955 99999988766542           2367777766431      2


Q ss_pred             CCCccEEEEeccccC--CcChHHHHHHHHHhcCCCc
Q 029065          120 APPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKT  153 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g  153 (199)
                      .+.||+|++..++++  ......+++.+.+++++++
T Consensus       125 ~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~  160 (230)
T PRK07580        125 LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL  160 (230)
T ss_pred             cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence            468999999998865  3456677788777665443

>PRK06922 hypothetical protein; Provisional

Probab=99.27  E-value=3.1e-11  Score=108.09  Aligned_cols=106  Identities=20%  Similarity=0.228  Sum_probs=79.8

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .++.+|||+|||+|..+..++..  +.+|+++|++. |++.|+.+....+             .++.+...|..+... .
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-------------~~ie~I~gDa~dLp~-~  482 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-------------RSWNVIKGDAINLSS-S  482 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------------CCeEEEEcchHhCcc-c
Confidence            35789999999999988888764  56899999965 9999988765442             245666656543211 1


Q ss_pred             ccCCCccEEEEeccccC-------------CcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~-------------~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ...++||+|+++.++++             ......+++.+.++|+|||.+++.+.
T Consensus       483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            23568999999877653             23568899999999999999999875

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.26  E-value=1.1e-10  Score=99.83  Aligned_cols=124  Identities=11%  Similarity=0.075  Sum_probs=90.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .+.+|||+|||+|.+++.++..+.+|+++|++ .+++.|++|+..++.            +++++...|......  ...
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~------------~~~~~~~~d~~~~~~--~~~  298 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL------------DNLSFAALDSAKFAT--AQM  298 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHHHH--hcC
Confidence            46799999999999999999988889999995 599999999988863            368888877753321  112


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecCC
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA  186 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (199)
                      .+||+|++++|.  ......+++.+.. ++|++.+|++-...   .+.+=+..+ .+|+++.+..-
T Consensus       299 ~~~D~vi~DPPr--~G~~~~~l~~l~~-~~p~~ivyvsc~p~---TlaRDl~~L-~gy~l~~~~~~  357 (374)
T TIGR02085       299 SAPELVLVNPPR--RGIGKELCDYLSQ-MAPKFILYSSCNAQ---TMAKDIAEL-SGYQIERVQLF  357 (374)
T ss_pred             CCCCEEEECCCC--CCCcHHHHHHHHh-cCCCeEEEEEeCHH---HHHHHHHHh-cCceEEEEEEe
Confidence            469999998884  2455677777764 68999999986532   222212233 67888776543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.26  E-value=1.1e-10  Score=92.32  Aligned_cols=99  Identities=20%  Similarity=0.204  Sum_probs=75.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..+..+++.+.+|+++|++ ++++.+++++...+            ..++++...|.....   ..
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~------------~~~v~~~~~d~~~~~---~~  141 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLG------------LHNVSVRHGDGWKGW---PA  141 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCC------------CCceEEEECCcccCC---Cc
Confidence            356899999999999999888887789999994 59999999988765            235777776653221   12


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      .++||+|++...+      ..+...+.+.|+|||.+++...
T Consensus       142 ~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        142 YAPFDRILVTAAA------PEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEEEEc
Confidence            3689999987643      2345667889999999888765

>PRK06202 hypothetical protein; Provisional

Probab=99.24  E-value=1.2e-10  Score=93.23  Aligned_cols=102  Identities=19%  Similarity=0.188  Sum_probs=73.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh----C--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL----G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~----g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ++.+|||||||+|.++..++..    |  .+|+++|++ ++++.|+++...+               ++.+...+.... 
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---------------~~~~~~~~~~~l-  123 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---------------GVTFRQAVSDEL-  123 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---------------CCeEEEEecccc-
Confidence            4579999999999988888752    3  479999995 4999998875433               233333333222 


Q ss_pred             cccccCCCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          115 HIKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                        ...+++||+|+++.+++|..+  ...+++.+.++++  |.+++.+..+.
T Consensus       124 --~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        124 --VAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             --cccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence              123568999999999988665  4678999999987  56666665554

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.23  E-value=2.6e-10  Score=91.72  Aligned_cols=115  Identities=17%  Similarity=0.192  Sum_probs=83.9

Q ss_pred             CCCCCCCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           37 CPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      +...+++..+||+|||+|.+++.++..  -++|+++|.++ ++..|.+|++++.+           ...+.+.+.+.+..
T Consensus       143 ~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-----------~g~i~v~~~~me~d  211 (328)
T KOG2904|consen  143 NSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-----------SGRIEVIHNIMESD  211 (328)
T ss_pred             hhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-----------cCceEEEecccccc
Confidence            334556778999999999999999864  34599999966 99999999999876           34666664433222


Q ss_pred             --ccccccCCCccEEEEeccccCCc--------------------------ChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          114 --DHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       114 --~~~~~~~~~fD~Ii~~~~~~~~~--------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                        +......+++|++++|+++-...                          .+..++.-..++|+|||.+.+....+
T Consensus       212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~  288 (328)
T KOG2904|consen  212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER  288 (328)
T ss_pred             cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence              11223358999999999984422                          24556666778899999999988844

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.22  E-value=4.2e-11  Score=98.82  Aligned_cols=106  Identities=23%  Similarity=0.311  Sum_probs=87.8

Q ss_pred             cCCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           36 FCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        36 ~~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      -|..+|+++.|||+|||+|.++.++|..|++ |.+++-++|.+.|+.-++.|.+           .++|.+..+.+++.+
T Consensus       171 ~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~-----------~~rItVI~GKiEdie  239 (517)
T KOG1500|consen  171 ENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNL-----------ADRITVIPGKIEDIE  239 (517)
T ss_pred             hcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCc-----------cceEEEccCcccccc
Confidence            4889999999999999999999999999997 9999999999999998888854           568888887766543


Q ss_pred             cccccCCCccEEEEecccc---CCcChHHHHHHHHHhcCCCcEEEE
Q 029065          115 HIKAVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~---~~~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                          ..++.|+||+-++-|   +..+++..+... +.|+|.|.++=
T Consensus       240 ----LPEk~DviISEPMG~mL~NERMLEsYl~Ar-k~l~P~GkMfP  280 (517)
T KOG1500|consen  240 ----LPEKVDVIISEPMGYMLVNERMLESYLHAR-KWLKPNGKMFP  280 (517)
T ss_pred             ----CchhccEEEeccchhhhhhHHHHHHHHHHH-hhcCCCCcccC
Confidence                246899999876654   466777777666 89999987653

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=2.3e-10  Score=86.92  Aligned_cols=130  Identities=18%  Similarity=0.228  Sum_probs=96.7

Q ss_pred             CCcEEEeCCCcChHHHHHHhh-C--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+-|||||||+|..+-++++. +  +.+.++|+ +.+++..++.+..|+.             .++.+..|+...-    
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-------------~~~~V~tdl~~~l----  106 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-------------HIDVVRTDLLSGL----  106 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-------------ccceeehhHHhhh----
Confidence            468999999999999999975 3  34899999 5599999999888864             4566666654332    


Q ss_pred             cCCCccEEEEeccccCCc---------------------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-Hh
Q 029065          119 VAPPFDYIIGTDVVYAEH---------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KS  176 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~---------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~  176 (199)
                      .+++.|+++.++++-..+                     ..+.++..+.++|+|.|.+|+....++..  ++.++.+ ..
T Consensus       107 ~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p--~ei~k~l~~~  184 (209)
T KOG3191|consen  107 RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKP--KEILKILEKK  184 (209)
T ss_pred             ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCH--HHHHHHHhhc
Confidence            237899999998873321                     26778888889999999999998877653  4555544 46


Q ss_pred             CCeEEEecCCCcCcc
Q 029065          177 NFNVKLVPKAKESTM  191 (199)
Q Consensus       177 ~~~v~~~~~~~~~~~  191 (199)
                      +|.+.....++...+
T Consensus       185 g~~~~~~~~Rk~~~E  199 (209)
T KOG3191|consen  185 GYGVRIAMQRKAGGE  199 (209)
T ss_pred             ccceeEEEEEecCCc
Confidence            788877766665543

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.21  E-value=1.4e-10  Score=100.97  Aligned_cols=126  Identities=13%  Similarity=0.147  Sum_probs=90.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-ccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~  119 (199)
                      .+.+|||+|||+|.+++.+++.+.+|+++|++ ++++.|++|+..++            ..++++...|+.... .....
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~------------~~nv~~~~~d~~~~l~~~~~~  359 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNG------------IANVEFLAGTLETVLPKQPWA  359 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhC------------CCceEEEeCCHHHHHHHHHhc
Confidence            35799999999999999999988889999995 49999999998886            347888888875321 11112


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecC
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  185 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  185 (199)
                      ...||+|+.+++-.  .....+++.+.+ ++|++.+|++...   ..+.+-++.+ ..+|+++.+..
T Consensus       360 ~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc~p---~tlard~~~l~~~gy~~~~~~~  420 (431)
T TIGR00479       360 GQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVSCNP---ATLARDLEFLCKEGYGITWVQP  420 (431)
T ss_pred             CCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEcCCH---HHHHHHHHHHHHCCeeEEEEEE
Confidence            35799999987732  335677777665 7888988887542   2233333334 45688876654

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.21  E-value=2.9e-10  Score=86.45  Aligned_cols=120  Identities=22%  Similarity=0.293  Sum_probs=89.0

Q ss_pred             cEEEeCCCcChHHHHHHhhCCe--EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           45 RVIELGAGCGVAGFGMALLGCN--VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~g~~--v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      +|||||||-|.+-..|+..|.+  .+++|+++ +++.|+..++.++.           ...|++.++|+..++   ...+
T Consensus        70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~-----------~n~I~f~q~DI~~~~---~~~~  135 (227)
T KOG1271|consen   70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF-----------SNEIRFQQLDITDPD---FLSG  135 (227)
T ss_pred             ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC-----------CcceeEEEeeccCCc---cccc
Confidence            9999999999999999988764  99999966 99998888777764           335999999997653   3467


Q ss_pred             CccEEEEeccccC--------CcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh-CCeEE
Q 029065          122 PFDYIIGTDVVYA--------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVK  181 (199)
Q Consensus       122 ~fD~Ii~~~~~~~--------~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~v~  181 (199)
                      +||+|+--.++-.        ...+.-.+..+.++|+|+|+++|.-.+...+   ++.+.+.. +|++.
T Consensus       136 qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~d---ELv~~f~~~~f~~~  201 (227)
T KOG1271|consen  136 QFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKD---ELVEEFENFNFEYL  201 (227)
T ss_pred             ceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHH---HHHHHHhcCCeEEE
Confidence            8888875544311        2223556888899999999999988876654   34444443 46654

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.20  E-value=1.1e-09  Score=83.87  Aligned_cols=123  Identities=22%  Similarity=0.261  Sum_probs=89.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +|.+++|+|||||.+++.++..+  .+|+++|. +++++..++|++..+            .+++++...+--  +.+..
T Consensus        34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg------------~~n~~vv~g~Ap--~~L~~   99 (187)
T COG2242          34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG------------VDNLEVVEGDAP--EALPD   99 (187)
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC------------CCcEEEEeccch--HhhcC
Confidence            57799999999999999999665  46999998 559999999999887            457888775542  22221


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCC-eEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNF-NVKLVPK  185 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~  185 (199)
                       ...||.|+....    ..++.+++++...|+|||.+++..-.-  +.....++.+. .++ ++.++.-
T Consensus       100 -~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~i  161 (187)
T COG2242         100 -LPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQI  161 (187)
T ss_pred             -CCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEEe
Confidence             237999998765    689999999999999999977654321  22233334443 355 5555443

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.20  E-value=5.9e-11  Score=96.99  Aligned_cols=116  Identities=16%  Similarity=0.125  Sum_probs=77.9

Q ss_pred             CCCcEEEeCCCcCh----HHHHHHhh-------CCeEEEeechh-HHHHHHHHHHH----hhhcc----ccCCCCC----
Q 029065           42 KGKRVIELGAGCGV----AGFGMALL-------GCNVITTDQIE-VLPLLKRNVEW----NTSRI----SQMNPGS----   97 (199)
Q Consensus        42 ~~~~VLdlGcG~G~----~sl~la~~-------g~~v~~~D~~~-~l~~a~~~~~~----~~~~~----~~~~~~~----   97 (199)
                      ++.+|||+|||+|-    +++.++..       +.+|+|+|+++ +++.|++.+-.    .+.+.    +.+.+.+    
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            35699999999995    45555543       34699999965 99999875411    11000    0011110    


Q ss_pred             ---CCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065           98 ---DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus        98 ---~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                         ....++.+...|..+..   ...++||+|++..++.+.  .....+++.+.+.|+|||.+++...
T Consensus       179 v~~~ir~~V~F~~~dl~~~~---~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~  243 (264)
T smart00138      179 VKPELKERVRFAKHNLLAES---PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS  243 (264)
T ss_pred             EChHHhCcCEEeeccCCCCC---CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence               11235777777775432   235789999999888664  4567899999999999999998654

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.19  E-value=4.9e-10  Score=89.25  Aligned_cols=144  Identities=16%  Similarity=0.159  Sum_probs=96.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCC--C-CCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMN--P-GSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~--~-~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+||..|||.|...++||..|.+|+|+|+++ +++.+.+.   ++...+...  . .-.....+++.+.|+.+.....
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e---~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQ---NTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHH---cCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            467999999999999999999999999999966 88877442   111100000  0 0011346888888886553221


Q ss_pred             ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEe-c----Chh--H-HHHHHHHHHhCCeEEEecCCC
Q 029065          118 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI-R----STS--V-HEQMLQMWKSNFNVKLVPKAK  187 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~-~----~~~--~-~~~~~~~~~~~~~v~~~~~~~  187 (199)
                      ...++||+|+-...+..  ++...+.++.+.++|+|||.+++..-. .    .+.  + .+.+...+...|+++.+....
T Consensus       120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~v~~~e~~~lf~~~~~i~~l~~~~  199 (226)
T PRK13256        120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYSVTQAELIKNFSAKIKFELIDSKQ  199 (226)
T ss_pred             cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCcCCHHHHHHhccCCceEEEeeecc
Confidence            22468999988777755  667899999999999999976544332 1    111  1 344555567778888877643


Q ss_pred             c
Q 029065          188 E  188 (199)
Q Consensus       188 ~  188 (199)
                      .
T Consensus       200 ~  200 (226)
T PRK13256        200 R  200 (226)
T ss_pred             c
Confidence            3

>PLN03075 nicotianamine synthase; Provisional

Probab=99.19  E-value=3e-10  Score=93.56  Aligned_cols=105  Identities=11%  Similarity=0.018  Sum_probs=81.2

Q ss_pred             CCCcEEEeCCCcC-hHHHHHH-hh--CCeEEEeech-hHHHHHHHHHHH-hhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           42 KGKRVIELGAGCG-VAGFGMA-LL--GCNVITTDQI-EVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G-~~sl~la-~~--g~~v~~~D~~-~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++|+|||||.| +.++.++ ..  +.+++++|.+ ++++.|++.+.. .++           .+++++...|..+.. 
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----------~~rV~F~~~Da~~~~-  190 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----------SKRMFFHTADVMDVT-  190 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----------cCCcEEEECchhhcc-
Confidence            6789999999976 4455555 33  4579999995 599999998854 332           457999988876431 


Q ss_pred             ccccCCCccEEEEeccccC-CcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~-~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                        ...+.||+|++...+|+ ......+++.+.+.|+|||.+++...
T Consensus       191 --~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        191 --ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             --cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence              12468999999966666 48999999999999999999988763

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.18  E-value=1.3e-10  Score=90.64  Aligned_cols=100  Identities=17%  Similarity=0.145  Sum_probs=81.0

Q ss_pred             CcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           44 KRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .+|.|||||+|..+..++++  ++.++|+|.+ +|++.|++..                 .+.++...|+..-    .+.
T Consensus        32 ~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------------p~~~f~~aDl~~w----~p~   90 (257)
T COG4106          32 RRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----------------PDATFEEADLRTW----KPE   90 (257)
T ss_pred             ceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------------CCCceecccHhhc----CCC
Confidence            58999999999999999976  6789999985 5998886542                 2445555554322    235


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      ..+|+|++|.++.+..++..++..+...|.|||.+-+-.+....
T Consensus        91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~d  134 (257)
T COG4106          91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLD  134 (257)
T ss_pred             CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccC
Confidence            68999999999999999999999999999999999888876443

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.18  E-value=7.6e-10  Score=96.78  Aligned_cols=107  Identities=18%  Similarity=0.109  Sum_probs=80.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|..++.++..   ..+|+++|++ .+++.+++|+..++.            .++++...|......  
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~~--  315 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------------TNIETKALDARKVHE--  315 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCCcccccc--
Confidence            4679999999999999999875   3579999995 499999999988763            357888877754321  


Q ss_pred             ccCCCccEEEEeccccCCc---------------C-------hHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          118 AVAPPFDYIIGTDVVYAEH---------------L-------LEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~---------------~-------~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ...+.||+|+++++.....               .       ...++....++|+|||.++.+...-
T Consensus       316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            1126799999987643221               1       2457888899999999988776543

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.17  E-value=3.2e-10  Score=96.62  Aligned_cols=107  Identities=17%  Similarity=0.083  Sum_probs=82.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+..+||||||+|...+.+|...  ..++|+|+ ..++..+.+++..++            ..++.+.+.|...... ..
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~g------------L~NV~~i~~DA~~ll~-~~  188 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLN------------LKNLLIINYDARLLLE-LL  188 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC------------CCcEEEEECCHHHhhh-hC
Confidence            35699999999999999999874  56999999 459999999888776            3478888878653321 23


Q ss_pred             cCCCccEEEEeccccCCcC------hHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          119 VAPPFDYIIGTDVVYAEHL------LEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~------~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .++.+|.|+++-+.-|...      ...++..+.++|+|||.+++.+-.
T Consensus       189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~  237 (390)
T PRK14121        189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS  237 (390)
T ss_pred             CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence            3678999998754433221      268999999999999999997754

>PHA03411 putative methyltransferase; Provisional

Probab=99.17  E-value=3.2e-10  Score=92.34  Aligned_cols=99  Identities=17%  Similarity=0.124  Sum_probs=73.0

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +.+|||+|||+|.+++.++..  +.+|+++|+++ +++.++++.                 .++.+.+.|.....    .
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----------------~~v~~v~~D~~e~~----~  123 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----------------PEAEWITSDVFEFE----S  123 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------------cCCEEEECchhhhc----c
Confidence            458999999999999888875  46899999954 988887753                 13456666654321    2


Q ss_pred             CCCccEEEEeccccCCc--C------------------hHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAEH--L------------------LEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~--~------------------~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ...||+|++++++++..  .                  ..+++.....+|+|+|.+++++..+
T Consensus       124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~  186 (279)
T PHA03411        124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR  186 (279)
T ss_pred             cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence            45799999999997621  1                  2466667778899999988886543

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.17  E-value=2.9e-10  Score=87.48  Aligned_cols=111  Identities=23%  Similarity=0.308  Sum_probs=78.7

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .+.|.+|||+.+|+|.+|+.+..+|+. ++++|.+. ++..+++|++..+.           ..+.++...|-.......
T Consensus        41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----------~~~~~~~~~da~~~L~~~  109 (187)
T COG0742          41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----------EGEARVLRNDALRALKQL  109 (187)
T ss_pred             ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----------ccceEEEeecHHHHHHhc
Confidence            589999999999999999999999987 99999954 99999999887653           234555555544111111


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHH----HhcCCCcEEEEEEEec
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIF----ALSGPKTTILLGYEIR  162 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~----~~l~~~g~i~i~~~~~  162 (199)
                      ...++||+|+..+| |....++.....+.    .+|+|++.+++.....
T Consensus       110 ~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         110 GTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             CCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            11235999999766 55555533333333    5699999988876644

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.17  E-value=5.4e-10  Score=97.24  Aligned_cols=106  Identities=21%  Similarity=0.203  Sum_probs=79.0

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .+|.+|||+|||+|..++.++..+  .+|+++|.++ ++..+++|+..++.             .+.+...|....... 
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------------~~~~~~~D~~~~~~~-  308 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------------KATVIVGDARDPAQW-  308 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CeEEEEcCcccchhh-
Confidence            367899999999999999999764  4799999954 99999999988763             246666665432110 


Q ss_pred             ccCCCccEEEEeccccCCc----------------------ChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ...++||.|+++++.....                      ....++....++|+|||.+++++.
T Consensus       309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            1245799999887654210                      124688889999999999988875

>TIGR03438 probable methyltransferase

Probab=99.17  E-value=2.6e-10  Score=94.85  Aligned_cols=109  Identities=15%  Similarity=0.120  Sum_probs=75.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .+.+|||+|||+|..+..++..   +.+|+++|+++ |++.+++++.....           .-++...+.|+.+.....
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----------~~~v~~i~gD~~~~~~~~  131 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----------QLEVHGICADFTQPLALP  131 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----------CceEEEEEEcccchhhhh
Confidence            4678999999999999888876   56799999965 99999988765321           124566777775432111


Q ss_pred             c-c-CCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 A-V-APPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~-~-~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      . . .+...++++..++++  ......+++.+.+.|+|||.++|....
T Consensus       132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~  179 (301)
T TIGR03438       132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDL  179 (301)
T ss_pred             cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence            1 0 112334444455655  445778999999999999999886643

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PHA03412 putative methyltransferase; Provisional

Probab=99.16  E-value=1.7e-10  Score=91.96  Aligned_cols=92  Identities=17%  Similarity=0.160  Sum_probs=67.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-----CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-----g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+.+|||+|||+|.+++.+++.     ..+|+++|+++ +++.|++|..                 .+.+...|+.... 
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------------~~~~~~~D~~~~~-  110 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------------EATWINADALTTE-  110 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------------CCEEEEcchhccc-
Confidence            3679999999999999998864     34799999955 9999997742                 2455566654321 


Q ss_pred             ccccCCCccEEEEeccccCC------------cChHHHHHHHHHhcCCCcE
Q 029065          116 IKAVAPPFDYIIGTDVVYAE------------HLLEPLLQTIFALSGPKTT  154 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~------------~~~~~~l~~l~~~l~~~g~  154 (199)
                         ..++||+||+|+|++..            .....++....+++++|+.
T Consensus       111 ---~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        111 ---FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             ---ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence               24589999999998731            1255688888886666654

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=3.6e-10  Score=88.31  Aligned_cols=100  Identities=21%  Similarity=0.265  Sum_probs=76.8

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .-++.+|||||||+|..+-.+|+...+|+.+|. .+..+.|++|+...+            ..++.+.+.|-...   ..
T Consensus        70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg------------~~nV~v~~gDG~~G---~~  134 (209)
T COG2518          70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLG------------YENVTVRHGDGSKG---WP  134 (209)
T ss_pred             CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcC------------CCceEEEECCcccC---CC
Confidence            336789999999999999999999889999998 669999999998887            44688887665322   23


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ...+||.|+....      ...+=+.+.+.|++||++++-..
T Consensus       135 ~~aPyD~I~Vtaa------a~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         135 EEAPYDRIIVTAA------APEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCcCEEEEeec------cCCCCHHHHHhcccCCEEEEEEc
Confidence            3579999987642      23333455667899999877554

>PRK04457 spermidine synthase; Provisional

Probab=99.15  E-value=5.2e-10  Score=91.33  Aligned_cols=123  Identities=12%  Similarity=0.138  Sum_probs=85.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++++|||||||+|.++..++..  +.+|+++|+ +++++.|++++....           ...++++...|....-  ..
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~-----------~~~rv~v~~~Da~~~l--~~  132 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPE-----------NGERFEVIEADGAEYI--AV  132 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCC-----------CCCceEEEECCHHHHH--Hh
Confidence            4679999999999999888765  457999999 559999998875432           1347888877764321  12


Q ss_pred             cCCCccEEEEeccccCCc-----ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCe
Q 029065          119 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN  179 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~-----~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~  179 (199)
                      ..++||+|++.. +....     ....+++.+.+.|+|||.+++....+.. ....+++.+.+-|.
T Consensus       133 ~~~~yD~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~  196 (262)
T PRK04457        133 HRHSTDVILVDG-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE  196 (262)
T ss_pred             CCCCCCEEEEeC-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence            235899999852 21111     2379999999999999998875443333 23455566655553

>PTZ00146 fibrillarin; Provisional

Probab=99.14  E-value=1.6e-09  Score=89.03  Aligned_cols=107  Identities=14%  Similarity=0.083  Sum_probs=72.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++.+|||||||+|..+..++.. +  ..|+++|+++ +++.+...+...              .++.+...|.......
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--------------~NI~~I~~Da~~p~~y  196 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--------------PNIVPIIEDARYPQKY  196 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------------CCCEEEECCccChhhh
Confidence            46789999999999999999976 3  3699999854 554444433211              2456666665432212


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      ....+.||+|++.-.  .......++..+.++|+|+|.++|..+.+.
T Consensus       197 ~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~  241 (293)
T PTZ00146        197 RMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANC  241 (293)
T ss_pred             hcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccc
Confidence            222357999988753  344455667788999999999999766543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.14  E-value=8e-10  Score=96.23  Aligned_cols=109  Identities=17%  Similarity=0.133  Sum_probs=82.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      +|.+|||+|||+|..+++++..   +.+|+++|+++ +++.+++|+...+.            .++++...|......  
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------------~~v~~~~~Da~~l~~--  302 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------------SSIEIKIADAERLTE--  302 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhhhhh--
Confidence            5789999999999999888865   46799999955 99999999988763            357777777653321  


Q ss_pred             ccCCCccEEEEeccccCCc----------------------ChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          118 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      ...+.||.|++..+.....                      ...+++....++|+|||.++.++..-..
T Consensus       303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  371 (431)
T PRK14903        303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK  371 (431)
T ss_pred             hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence            2246799999876653321                      1256688888999999999888875443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.14  E-value=1.7e-09  Score=94.29  Aligned_cols=109  Identities=19%  Similarity=0.126  Sum_probs=80.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-  116 (199)
                      +|.+|||+|||+|..++.++..   ..+|+++|++ ++++.+++|+..++.            .++++.+.|....... 
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------------~~v~~~~~D~~~~~~~~  319 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------------KSIKILAADSRNLLELK  319 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CeEEEEeCChhhccccc
Confidence            5789999999999999998875   2479999995 499999999998873            3577777776533211 


Q ss_pred             cccCCCccEEEEeccccC------CcC----------------hHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 KAVAPPFDYIIGTDVVYA------EHL----------------LEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~------~~~----------------~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ....+.||.|++..+...      ..+                ...++....++|+|||.++.++..-
T Consensus       320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            012457999998765422      111                3577888899999999987776543

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.14  E-value=1e-09  Score=89.72  Aligned_cols=108  Identities=17%  Similarity=0.177  Sum_probs=79.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      +|.+|||+|||+|..++.++..   ...|+++|++ .+++.+++|+..++.            .++++...|.....   
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~---  135 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------------LNVAVTNFDGRVFG---  135 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEecCCHHHhh---
Confidence            5789999999999999988865   2479999995 499999999988863            35777776654221   


Q ss_pred             ccCCCccEEEEeccccCCc----------------------ChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          118 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      ...+.||.|++.++.....                      ....++....++|+|||.++.+...-..
T Consensus       136 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       136 AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            1234699999987654321                      1245888888999999998887765443

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.13  E-value=4.5e-10  Score=92.10  Aligned_cols=94  Identities=11%  Similarity=0.066  Sum_probs=68.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-----CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-----g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+.+|||+|||+|..+..++..     +..|+++|++. +++.|+++.                 .++.+...|..+.  
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------------~~~~~~~~d~~~l--  145 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------------PQVTFCVASSHRL--  145 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------------CCCeEEEeecccC--
Confidence            3468999999999988888754     23699999965 888886542                 1456666665432  


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                       +..++.||+|++...       ...+..+.++|+|||.+++..+..
T Consensus       146 -p~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG~li~~~p~~  184 (272)
T PRK11088        146 -PFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPGP  184 (272)
T ss_pred             -CCcCCceeEEEEecC-------CCCHHHHHhhccCCCEEEEEeCCC
Confidence             334678999997532       234678899999999999887654

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.13  E-value=2.8e-09  Score=85.10  Aligned_cols=108  Identities=16%  Similarity=0.117  Sum_probs=85.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh--------CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL--------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~--------g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      .++.+|||++||||-++..+.+.        +.+|+..|+ +++|..+++.....++.         ...++.+...|- 
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---------~~~~~~w~~~dA-  168 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---------ASSRVEWVEGDA-  168 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---------cCCceEEEeCCc-
Confidence            35689999999999988887754        256999999 55999998887654431         123466666554 


Q ss_pred             CCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          112 NEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       112 ~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                        +.+++++..||....+--+....++++.++...|+|||||++++-.-
T Consensus       169 --E~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeF  215 (296)
T KOG1540|consen  169 --EDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEF  215 (296)
T ss_pred             --ccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEc
Confidence              45567788999999998889999999999999999999999865443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.12  E-value=4.2e-10  Score=90.40  Aligned_cols=104  Identities=14%  Similarity=0.090  Sum_probs=78.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~  116 (199)
                      +.++|||+|||+|..++.++..   ..+|+++|.+ ++++.|++|++.++.           ..++++...|..+... +
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----------~~~i~~~~gda~~~L~~l  136 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----------DHKINFIQSDALSALDQL  136 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEccHHHHHHHH
Confidence            5789999999999988877754   3579999995 599999999998875           3478888877754311 1


Q ss_pred             c--ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ~--~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .  ...++||+|+....   ...+..++..+.++|+|||.+++..
T Consensus       137 ~~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        137 LNNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             HhCCCCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            0  11468999988632   3566788999999999999877644

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.12  E-value=1.7e-09  Score=83.94  Aligned_cols=118  Identities=16%  Similarity=0.166  Sum_probs=76.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhC---CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-  116 (199)
                      .+|.+|||+|||+|.++..++...   .+|+++|+++..          .            ...+++...|+.+.... 
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~------------~~~i~~~~~d~~~~~~~~   88 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------P------------IENVDFIRGDFTDEEVLN   88 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------c------------CCCceEEEeeCCChhHHH
Confidence            467899999999999998888653   359999996632          1            12456666776543210 


Q ss_pred             ----cccCCCccEEEEecccc--C--Cc-------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEE
Q 029065          117 ----KAVAPPFDYIIGTDVVY--A--EH-------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK  181 (199)
Q Consensus       117 ----~~~~~~fD~Ii~~~~~~--~--~~-------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~  181 (199)
                          ....+.||+|+++.+.+  .  ..       ....++..+.+.|+|||.+++.......  ...++..+...|...
T Consensus        89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~--~~~~l~~l~~~~~~~  166 (188)
T TIGR00438        89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEE--IDEYLNELRKLFEKV  166 (188)
T ss_pred             HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCcc--HHHHHHHHHhhhceE
Confidence                12245799999865321  1  11       2367899999999999999886432211  345556655555433


Q ss_pred             E
Q 029065          182 L  182 (199)
Q Consensus       182 ~  182 (199)
                      .
T Consensus       167 ~  167 (188)
T TIGR00438       167 K  167 (188)
T ss_pred             E
Confidence            3

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.11  E-value=2.5e-10  Score=95.32  Aligned_cols=84  Identities=18%  Similarity=0.111  Sum_probs=58.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHh-hhccccCCCCCCCCCcEEEEEe-eeCCCcc-
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVEL-DWGNEDH-  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~-  115 (199)
                      .+.+|||||||+|.+...++..  +.+++++|+++ +++.|++|++.| ++           ..++++... +..+... 
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----------~~~I~~~~~~~~~~i~~~  182 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----------NGAIRLRLQKDSKAIFKG  182 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----------cCcEEEEEccchhhhhhc
Confidence            3579999999999777666643  67899999955 999999999998 54           345665431 2111110 


Q ss_pred             ccccCCCccEEEEeccccCCc
Q 029065          116 IKAVAPPFDYIIGTDVVYAEH  136 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~  136 (199)
                      .....+.||+|++|+|+|...
T Consensus       183 i~~~~~~fDlivcNPPf~~s~  203 (321)
T PRK11727        183 IIHKNERFDATLCNPPFHASA  203 (321)
T ss_pred             ccccCCceEEEEeCCCCcCcc
Confidence            011246899999999988643

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.10  E-value=9e-10  Score=84.09  Aligned_cols=98  Identities=14%  Similarity=0.137  Sum_probs=68.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||||||+|.++..++..+.+|+++|+++ +++.+++++...              .++++.+.|.....   ...
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~--------------~~v~ii~~D~~~~~---~~~   75 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA--------------DNLTVIHGDALKFD---LPK   75 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC--------------CCEEEEECchhcCC---ccc
Confidence            467999999999999999998888899999955 999998876432              26788887775442   223


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHh--cCCCcEEEEEE
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILLGY  159 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~--l~~~g~i~i~~  159 (199)
                      ..||+|+++.+++.   ...++..+...  +.++|.+++-.
T Consensus        76 ~~~d~vi~n~Py~~---~~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       76 LQPYKVVGNLPYNI---STPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             cCCCEEEECCCccc---HHHHHHHHHhcCCCcceEEEEEEH
Confidence            46999999877543   23444444433  23566655543

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.10  E-value=1.2e-09  Score=93.20  Aligned_cols=123  Identities=14%  Similarity=0.096  Sum_probs=87.2

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-ccc---
Q 029065           44 KRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA---  118 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~---  118 (199)
                      .+|||++||+|.+++.+++...+|+++|.+ .+++.+++|+..|+.            +++++...|...... ...   
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~------------~~v~~~~~d~~~~l~~~~~~~~  275 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI------------DNVQIIRMSAEEFTQAMNGVRE  275 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEECCHHHHHHHHhhccc
Confidence            579999999999999999887789999995 499999999998873            468888877754311 000   


Q ss_pred             ---------cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecCC
Q 029065          119 ---------VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA  186 (199)
Q Consensus       119 ---------~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (199)
                               ...+||+|+..+| + ......+++.+.+   +++.+|++-...   .+.+=+..+..+|+++.+..-
T Consensus       276 ~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC~p~---tlarDl~~L~~gY~l~~v~~~  344 (362)
T PRK05031        276 FNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISCNPE---TLCENLETLSQTHKVERFALF  344 (362)
T ss_pred             ccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEeCHH---HHHHHHHHHcCCcEEEEEEEc
Confidence                     0125999999888 4 4556777777765   688899987652   222212233347888776543

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=1.3e-10  Score=85.16  Aligned_cols=80  Identities=23%  Similarity=0.336  Sum_probs=65.4

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++|+.++|||||+|.+++..+..+++ |+|+|+ +++++.+++|++.-..             ++++.++|+....  
T Consensus        45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-------------qidlLqcdildle--  109 (185)
T KOG3420|consen   45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-------------QIDLLQCDILDLE--  109 (185)
T ss_pred             ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-------------hhheeeeeccchh--
Confidence            4689999999999999999888888877 999999 6699999999877643             4577777775443  


Q ss_pred             cccCCCccEEEEeccccC
Q 029065          117 KAVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~  134 (199)
                       ...+.||..+.++++--
T Consensus       110 -~~~g~fDtaviNppFGT  126 (185)
T KOG3420|consen  110 -LKGGIFDTAVINPPFGT  126 (185)
T ss_pred             -ccCCeEeeEEecCCCCc
Confidence             23478999999999854

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.09  E-value=1.5e-09  Score=84.98  Aligned_cols=118  Identities=19%  Similarity=0.260  Sum_probs=87.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      +..-|||||||+|+-+..+...|...+++|++. ||+.|.+. +..+                ++..+|.+  +-.++..
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-e~eg----------------dlil~DMG--~Glpfrp  110 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-ELEG----------------DLILCDMG--EGLPFRP  110 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-hhhc----------------CeeeeecC--CCCCCCC
Confidence            567899999999999999999998899999954 99999862 2222                55667777  3455667


Q ss_pred             CCccEEEEeccccC-----------CcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCC
Q 029065          121 PPFDYIIGTDVVYA-----------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNF  178 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~-----------~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~  178 (199)
                      +.||-+|+...+-+           ...+..|+.++...|++++...+-+...+..-.+.++... ..+|
T Consensus       111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF  180 (270)
T KOG1541|consen  111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF  180 (270)
T ss_pred             CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence            89999887655422           1135667888999999999999988877665555554443 4444

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.09  E-value=3.3e-09  Score=92.76  Aligned_cols=123  Identities=20%  Similarity=0.114  Sum_probs=86.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+|.+|||+|||+|..++.++..   +.+|+++|++. +++.+++++...+.            .++++...|.....  
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------------~~v~~~~~Da~~~~--  314 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------------TIIETIEGDARSFS--  314 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------------CeEEEEeCcccccc--
Confidence            46789999999999988888864   35799999955 99999999988763            35777777764321  


Q ss_pred             cccCCCccEEEEeccccCCc----------------------ChHHHHHHHHHhcCCCcEEEEEEEecCh----hHHHHH
Q 029065          117 KAVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQM  170 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~----~~~~~~  170 (199)
                        ..+.||+|++..+.....                      ....++..+.++|+|||.+++++..-.+    .+...|
T Consensus       315 --~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~  392 (445)
T PRK14904        315 --PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAF  392 (445)
T ss_pred             --cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHH
Confidence              245799999764431110                      1235888899999999999988865432    234455


Q ss_pred             HHHHHhCCeE
Q 029065          171 LQMWKSNFNV  180 (199)
Q Consensus       171 ~~~~~~~~~v  180 (199)
                      ++... +|.+
T Consensus       393 l~~~~-~~~~  401 (445)
T PRK14904        393 LQRHP-EFSA  401 (445)
T ss_pred             HHhCC-CCEE
Confidence            54322 3554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.08  E-value=2.7e-11  Score=95.11  Aligned_cols=128  Identities=20%  Similarity=0.250  Sum_probs=89.3

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065           44 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  122 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  122 (199)
                      +++||||||||+.+..+-.+..+.+++|+|+ |++.|.++-.-..+.              .....++...    ..+.+
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~--------------~Aea~~Fl~~----~~~er  188 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLY--------------VAEAVLFLED----LTQER  188 (287)
T ss_pred             ceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHH--------------HHHHHHHhhh----ccCCc
Confidence            5899999999999999999888999999977 998886642111110              0000112211    23578


Q ss_pred             ccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhH------H------HHHHH-HH-HhCCeEEEecCCCc
Q 029065          123 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSV------H------EQMLQ-MW-KSNFNVKLVPKAKE  188 (199)
Q Consensus       123 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~------~------~~~~~-~~-~~~~~v~~~~~~~~  188 (199)
                      ||+|.+.|++-....+..++.....+|+|||.+.|+...-....      .      +.+.. .+ ..+|++..+.+...
T Consensus       189 ~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tti  268 (287)
T COG4976         189 FDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTTI  268 (287)
T ss_pred             ccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeecccc
Confidence            99999999999999999999999999999999988865322110      1      12322 33 35788877766554


Q ss_pred             C
Q 029065          189 S  189 (199)
Q Consensus       189 ~  189 (199)
                      .
T Consensus       269 R  269 (287)
T COG4976         269 R  269 (287)
T ss_pred             h
Confidence            3

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.04  E-value=3.2e-09  Score=90.22  Aligned_cols=123  Identities=12%  Similarity=0.065  Sum_probs=86.0

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-c--
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-A--  118 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~--  118 (199)
                      +.+|||+|||+|.+|+.+++...+|+++|.+ ++++.|++|+..|+.            .++++...|........ .  
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~------------~~v~~~~~d~~~~~~~~~~~~  265 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI------------DNVQIIRMSAEEFTQAMNGVR  265 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEEcCHHHHHHHHhhcc
Confidence            3479999999999999999887789999995 599999999998863            46788887775422100 0  


Q ss_pred             -c---------CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecC
Q 029065          119 -V---------APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK  185 (199)
Q Consensus       119 -~---------~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (199)
                       .         ...||+|+..+|  .......+++.+.+   +++.+|++-....   +.+=+..+..+|+++.+..
T Consensus       266 ~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~ivYvsC~p~t---laRDl~~L~~~Y~l~~v~~  334 (353)
T TIGR02143       266 EFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YERILYISCNPET---LKANLEQLSETHRVERFAL  334 (353)
T ss_pred             ccccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCcEEEEEcCHHH---HHHHHHHHhcCcEEEEEEE
Confidence             0         124899999887  34556777777755   7889999876432   2221223334477776654

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK00811 spermidine synthase; Provisional

Probab=99.04  E-value=3.8e-09  Score=87.20  Aligned_cols=128  Identities=13%  Similarity=0.012  Sum_probs=82.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++++||+||||.|..+..+.+. + .+|+++|++ .+++.|++.+...+...       -...++++...|.....  ..
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-------~~d~rv~v~~~Da~~~l--~~  146 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-------YDDPRVELVIGDGIKFV--AE  146 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-------ccCCceEEEECchHHHH--hh
Confidence            4679999999999999888876 4 469999995 59999999875432100       01346787777754321  12


Q ss_pred             cCCCccEEEEec--cccCCc--ChHHHHHHHHHhcCCCcEEEEEEEe--cChhHHHHHHHHHHhCC
Q 029065          119 VAPPFDYIIGTD--VVYAEH--LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF  178 (199)
Q Consensus       119 ~~~~fD~Ii~~~--~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~  178 (199)
                      ..++||+|++..  +.....  ....+++.+++.|+|||.+++....  ..........+.+.+-|
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F  212 (283)
T PRK00811        147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVF  212 (283)
T ss_pred             CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHC
Confidence            356899999852  221111  2377889999999999987764321  22333444445554434

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.04  E-value=3e-09  Score=89.11  Aligned_cols=98  Identities=22%  Similarity=0.240  Sum_probs=71.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC---CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|..+..+++..   ..|+++|.+ ++++.|++++..++            ..++.+...|....   .
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g------------~~nV~~i~gD~~~~---~  144 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG------------IENVIFVCGDGYYG---V  144 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC------------CCcEEEEeCChhhc---c
Confidence            56899999999999999999763   259999995 59999999988775            33577776664322   1


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ....+||+|++...      ...+...+.+.|+|||.+++...
T Consensus       145 ~~~~~fD~Ii~~~g------~~~ip~~~~~~LkpgG~Lvv~~~  181 (322)
T PRK13943        145 PEFAPYDVIFVTVG------VDEVPETWFTQLKEGGRVIVPIN  181 (322)
T ss_pred             cccCCccEEEECCc------hHHhHHHHHHhcCCCCEEEEEeC
Confidence            12357999998632      22334556788999999887543

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.01  E-value=1e-08  Score=89.27  Aligned_cols=120  Identities=16%  Similarity=0.075  Sum_probs=81.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +|.+|||+|||+|..++.++.. + ++|+++|++ ++++.+++|+...+..           ..+.....|...... ..
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~-----------~~v~~~~~d~~~~~~-~~  305 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLT-----------IKAETKDGDGRGPSQ-WA  305 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCC-----------eEEEEeccccccccc-cc
Confidence            5789999999999999998875 3 679999995 4999999999887631           122223333321111 01


Q ss_pred             cCCCccEEEEeccccCC------cC----------------hHHHHHHHHHhcCCCcEEEEEEEec----ChhHHHHHHH
Q 029065          119 VAPPFDYIIGTDVVYAE------HL----------------LEPLLQTIFALSGPKTTILLGYEIR----STSVHEQMLQ  172 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~------~~----------------~~~~l~~l~~~l~~~g~i~i~~~~~----~~~~~~~~~~  172 (199)
                      ..+.||.|++..+....      +.                ...++....++|+|||.++.++..-    +..+.+.|++
T Consensus       306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~  385 (426)
T TIGR00563       306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ  385 (426)
T ss_pred             cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence            24679999986553221      11                3578888999999999998887654    3334555655


Q ss_pred             H
Q 029065          173 M  173 (199)
Q Consensus       173 ~  173 (199)
                      .
T Consensus       386 ~  386 (426)
T TIGR00563       386 E  386 (426)
T ss_pred             h
Confidence            4

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.01  E-value=4.4e-09  Score=83.41  Aligned_cols=128  Identities=14%  Similarity=0.288  Sum_probs=82.4

Q ss_pred             ccCCCCCCCCcEEEeCCCcChHHHHHHhh-CCe-EEEeechh-HHHHHHHHHHHhh---hccccC---------------
Q 029065           35 RFCPSKLKGKRVIELGAGCGVAGFGMALL-GCN-VITTDQIE-VLPLLKRNVEWNT---SRISQM---------------   93 (199)
Q Consensus        35 ~~~~~~~~~~~VLdlGcG~G~~sl~la~~-g~~-v~~~D~~~-~l~~a~~~~~~~~---~~~~~~---------------   93 (199)
                      .+....++++.+|||||-+|.+++.+|+. |++ |+|+|+.. .+..|++++.--.   ..+...               
T Consensus        51 ~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~  130 (288)
T KOG2899|consen   51 VLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQR  130 (288)
T ss_pred             hccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccc
Confidence            34556788999999999999999999975 776 99999955 8889988874211   111100               


Q ss_pred             CC-----CCCCCCcEEEEEee--eCCCccccccCCCccEEEEeccc------cCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065           94 NP-----GSDLLGSIQAVELD--WGNEDHIKAVAPPFDYIIGTDVV------YAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus        94 ~~-----~~~~~~~i~~~~~d--~~~~~~~~~~~~~fD~Ii~~~~~------~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ++     +.+-..++.+...+  .+..+.+......||+|+|-...      ++++-+..+++.+.++|.|||++++.-+
T Consensus       131 ~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ  210 (288)
T KOG2899|consen  131 NEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ  210 (288)
T ss_pred             ccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence            00     00000111111111  11111223345689999876554      3366799999999999999999888765


Q ss_pred             ec
Q 029065          161 IR  162 (199)
Q Consensus       161 ~~  162 (199)
                      .+
T Consensus       211 pW  212 (288)
T KOG2899|consen  211 PW  212 (288)
T ss_pred             ch
Confidence            54

>PLN02476 O-methyltransferase

Probab=99.00  E-value=8.1e-09  Score=84.63  Aligned_cols=108  Identities=13%  Similarity=0.192  Sum_probs=82.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~  116 (199)
                      +.++|||||+|+|..++++|..   +.+|+.+|.+ +..+.|++|++..+.           ..++++...|..+.. .+
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----------~~~I~li~GdA~e~L~~l  186 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----------SHKVNVKHGLAAESLKSM  186 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence            4689999999999999999974   4569999994 599999999998875           347888877664321 11


Q ss_pred             --cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          117 --KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       117 --~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                        ....+.||+|+....   ...+..+++.+.++|+|||.+++-....+
T Consensus       187 ~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~  232 (278)
T PLN02476        187 IQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVLWH  232 (278)
T ss_pred             HhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence              111358999998753   56788999999999999999776544433

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.99  E-value=3e-09  Score=82.91  Aligned_cols=90  Identities=17%  Similarity=0.150  Sum_probs=65.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++++|||+|||+|..+..++.. +..++++|+++ +++.++.    .               .+++...|..... ....
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~---------------~~~~~~~d~~~~l-~~~~   72 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R---------------GVNVIQGDLDEGL-EAFP   72 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c---------------CCeEEEEEhhhcc-cccC
Confidence            4679999999999998888754 56799999954 7766643    1               2355556654311 1123


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCC
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGP  151 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~  151 (199)
                      .++||+|+++.++++..+...+++.+.+.+++
T Consensus        73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        73 DKSFDYVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            56899999999999998999998888776653

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.98  E-value=1.8e-09  Score=85.75  Aligned_cols=141  Identities=20%  Similarity=0.214  Sum_probs=92.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHH-hhh-ccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEW-NTS-RISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~-~~~-~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.+||..|||.|...+.+|..|.+|+|+|+++ +++.+.+.... ... .....  ......+|++.+.|+.....  .
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~--~~~~~~~i~~~~gDfF~l~~--~  112 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGF--KRYQAGRITIYCGDFFELPP--E  112 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTE--EEETTSSEEEEES-TTTGGG--S
T ss_pred             CCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccce--eeecCCceEEEEcccccCCh--h
Confidence            456999999999999999999999999999966 88777332111 000 00000  00123468888888865432  1


Q ss_pred             cCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEE-EEEec-----Chh--H-HHHHHHHHHhCCeEEEecCC
Q 029065          119 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILL-GYEIR-----STS--V-HEQMLQMWKSNFNVKLVPKA  186 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i-~~~~~-----~~~--~-~~~~~~~~~~~~~v~~~~~~  186 (199)
                      ..++||+|+=..++..  ++...+..+.+.++|+|+|.+++ +....     .+.  + .+.+.+.+..+|+++.+...
T Consensus       113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~v~~~ev~~l~~~~f~i~~l~~~  191 (218)
T PF05724_consen  113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFSVTEEEVRELFGPGFEIEELEEE  191 (218)
T ss_dssp             CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS----HHHHHHHHTTTEEEEEEEEE
T ss_pred             hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCCCCHHHHHHHhcCCcEEEEEecc
Confidence            2358999998877754  77899999999999999999433 33211     111  1 44555666778998777653

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.97  E-value=3.8e-09  Score=90.56  Aligned_cols=98  Identities=18%  Similarity=0.217  Sum_probs=74.6

Q ss_pred             CCcEEEeCCCcChHHHHHHhh-CC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~-g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +.+|||++||+|..++.++.. ++ +|+++|++ .+++.+++|+..|+.            +.+++.+.|....  ... 
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------------~~~~v~~~Da~~~--l~~-  122 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------------ENEKVFNKDANAL--LHE-  122 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CceEEEhhhHHHH--Hhh-
Confidence            358999999999999999875 43 69999995 599999999999974            2455666665321  111 


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .++||+|+.+++    .....++....+.++++|.+|++.
T Consensus       123 ~~~fD~V~lDP~----Gs~~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        123 ERKFDVVDIDPF----GSPAPFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             cCCCCEEEECCC----CCcHHHHHHHHHHhcCCCEEEEEe
Confidence            357999999653    445678888667789999999994

>TIGR00417 speE spermidine synthase

Probab=98.95  E-value=1.5e-08  Score=83.01  Aligned_cols=108  Identities=14%  Similarity=-0.005  Sum_probs=73.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++++||+||||+|..+..+++..  .+|+++|+++ +++.+++.+...+...        ...++++...|....  ...
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~--------~~~~v~i~~~D~~~~--l~~  141 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSY--------DDPRVDLQIDDGFKF--LAD  141 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccc--------cCCceEEEECchHHH--HHh
Confidence            35699999999998887777664  4699999954 9999998764432100        023566665443211  111


Q ss_pred             cCCCccEEEEeccccC--CcC--hHHHHHHHHHhcCCCcEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYA--EHL--LEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~--~~~--~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..++||+|++..+...  ...  ...+++.+.+.|+|||.+++..
T Consensus       142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            2468999998754221  112  4688899999999999988763

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.94  E-value=3.7e-09  Score=83.22  Aligned_cols=106  Identities=17%  Similarity=0.168  Sum_probs=81.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~  116 (199)
                      +.++||||||++|.-++.+|..   +++|+.+|. ++..+.|++++...+.           .+++++...|..+... +
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----------~~~I~~~~gda~~~l~~l  113 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----------DDRIEVIEGDALEVLPEL  113 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----------GGGEEEEES-HHHHHHHH
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----------CCcEEEEEeccHhhHHHH
Confidence            4689999999999999999964   678999999 4588999999998875           3578988877653211 1


Q ss_pred             ccc--CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAV--APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~--~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ...  .++||+|+...   ....+...+..+.++|++||.+++-...
T Consensus       114 ~~~~~~~~fD~VFiDa---~K~~y~~y~~~~~~ll~~ggvii~DN~l  157 (205)
T PF01596_consen  114 ANDGEEGQFDFVFIDA---DKRNYLEYFEKALPLLRPGGVIIADNVL  157 (205)
T ss_dssp             HHTTTTTSEEEEEEES---TGGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred             HhccCCCceeEEEEcc---cccchhhHHHHHhhhccCCeEEEEcccc
Confidence            111  35899999875   4577888999999999999987765543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.94  E-value=4.4e-09  Score=83.04  Aligned_cols=100  Identities=24%  Similarity=0.314  Sum_probs=70.5

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-CC--eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g~--~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .-+|.+|||||||+|..+..++.. |.  .|+++|. +...+.|++++...+.            .++.+...|....  
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------------~nv~~~~gdg~~g--  135 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------------DNVEVVVGDGSEG--  135 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------------HSEEEEES-GGGT--
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------------CceeEEEcchhhc--
Confidence            346789999999999999888876 43  5999998 5599999999988763            3788888775322  


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                       .....+||.|++....      ..+-..+.+.|++||++++-..
T Consensus       136 -~~~~apfD~I~v~~a~------~~ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  136 -WPEEAPFDRIIVTAAV------PEIPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             -TGGG-SEEEEEESSBB------SS--HHHHHTEEEEEEEEEEES
T ss_pred             -cccCCCcCEEEEeecc------chHHHHHHHhcCCCcEEEEEEc
Confidence             2235689999998543      2333446667899999877554

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.92  E-value=4.4e-09  Score=81.10  Aligned_cols=97  Identities=14%  Similarity=0.171  Sum_probs=70.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +|.+|||||||.|.+-..+.. ++.++.|+|++. .+..|.    .+               -+.+.+.|+.... ..+.
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv----~r---------------Gv~Viq~Dld~gL-~~f~   72 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV----AR---------------GVSVIQGDLDEGL-ADFP   72 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH----Hc---------------CCCEEECCHHHhH-hhCC
Confidence            578999999999977666664 688899999844 333332    22               3467778876442 2355


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +++||+||.+.++-....+..+++.+.+.   |...+++.|+
T Consensus        73 d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPN  111 (193)
T PF07021_consen   73 DQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPN  111 (193)
T ss_pred             CCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecC
Confidence            78999999999998888888888887666   4466677654

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.88  E-value=1.7e-08  Score=79.81  Aligned_cols=106  Identities=18%  Similarity=0.150  Sum_probs=81.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEE-eeeCCCccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-LDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~d~~~~~~~  116 (199)
                      ..++|||||++.|.-++++|..   ..+++.+|. ++..+.|++|+..-+.           ..+++... +|+.+.-..
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----------~~~i~~~~~gdal~~l~~  127 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----------DDRIELLLGGDALDVLSR  127 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------cceEEEEecCcHHHHHHh
Confidence            5789999999999999999964   346999999 5599999999998875           34566666 355422111


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                       ...++||+|+..   ......+.+++.+.++|+|||.+++-.-..
T Consensus       128 -~~~~~fDliFID---adK~~yp~~le~~~~lLr~GGliv~DNvl~  169 (219)
T COG4122         128 -LLDGSFDLVFID---ADKADYPEYLERALPLLRPGGLIVADNVLF  169 (219)
T ss_pred             -ccCCCccEEEEe---CChhhCHHHHHHHHHHhCCCcEEEEeeccc
Confidence             235899999986   356789999999999999999876654333

>PRK03612 spermidine synthase; Provisional

Probab=98.86  E-value=4.6e-08  Score=87.18  Aligned_cols=132  Identities=14%  Similarity=0.050  Sum_probs=84.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++++|||||||+|..+..+++..  .+|+++|++ ++++.++++.........     .-..+++++...|....  ...
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-----~~~dprv~vi~~Da~~~--l~~  369 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG-----ALDDPRVTVVNDDAFNW--LRK  369 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc-----ccCCCceEEEEChHHHH--HHh
Confidence            46799999999999998888764  479999995 599999985322111000     00124677777765432  122


Q ss_pred             cCCCccEEEEeccccCCc-----ChHHHHHHHHHhcCCCcEEEEEEEe--cChhHHHHHHHHHHh-CCeE
Q 029065          119 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKS-NFNV  180 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~-----~~~~~l~~l~~~l~~~g~i~i~~~~--~~~~~~~~~~~~~~~-~~~v  180 (199)
                      ..++||+|+++.+.....     .-.++++.+++.|+|||.+++....  ...+.+....+.+.+ +|.+
T Consensus       370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v  439 (521)
T PRK03612        370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLAT  439 (521)
T ss_pred             CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEE
Confidence            246899999974322211     2346899999999999998875432  123334455555554 4744

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.85  E-value=1.6e-08  Score=79.17  Aligned_cols=96  Identities=21%  Similarity=0.174  Sum_probs=70.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHh--hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~--~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +|..|+|+.||.|..++.+|+  .++.|+++|.+ .+++.+++|+.+|++           ...+...+.|......   
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----------~~~i~~~~~D~~~~~~---  166 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----------ENRIEVINGDAREFLP---  166 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------------TTTEEEEES-GGG------
T ss_pred             cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----------CCeEEEEcCCHHHhcC---
Confidence            578999999999999999998  56679999995 599999999999975           3468888888753321   


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  156 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~  156 (199)
                       .+.||.|+++.+    .....++.....+++++|.+.
T Consensus       167 -~~~~drvim~lp----~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  167 -EGKFDRVIMNLP----ESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             -TT-EEEEEE--T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred             -ccccCEEEECCh----HHHHHHHHHHHHHhcCCcEEE
Confidence             678999999765    344467888888899888753

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.85  E-value=1.3e-08  Score=81.79  Aligned_cols=96  Identities=20%  Similarity=0.181  Sum_probs=76.7

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .++|+|||+|.|..+..+++.  +.+++..|.+++++.+++    .              +++++...|+.  +..   .
T Consensus       101 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~----~--------------~rv~~~~gd~f--~~~---P  157 (241)
T PF00891_consen  101 FKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE----A--------------DRVEFVPGDFF--DPL---P  157 (241)
T ss_dssp             SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH----T--------------TTEEEEES-TT--TCC---S
T ss_pred             ccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc----c--------------cccccccccHH--hhh---c
Confidence            468999999999999999876  557999999998888877    1              27899998886  211   2


Q ss_pred             CCccEEEEeccccC--CcChHHHHHHHHHhcCCC--cEEEEEEEec
Q 029065          121 PPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPK--TTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~--g~i~i~~~~~  162 (199)
                      . +|+++...++++  .+....+++.+.+.|+||  |.++|.+...
T Consensus       158 ~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~  202 (241)
T PF00891_consen  158 V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL  202 (241)
T ss_dssp             S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred             c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence            2 999999999977  556888999999999988  9999998863

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.85  E-value=8.6e-09  Score=81.69  Aligned_cols=113  Identities=16%  Similarity=0.219  Sum_probs=82.8

Q ss_pred             cEEEeCCCcChHHHHHHhh--C--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cccc
Q 029065           45 RVIELGAGCGVAGFGMALL--G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA  118 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~--g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~  118 (199)
                      +|||+|||.|.....+.+-  .  -.|.+.|.+ .+++..+.+..-+.             .++.....|+.... ..+.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-------------~~~~afv~Dlt~~~~~~~~  140 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-------------SRVEAFVWDLTSPSLKEPP  140 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-------------hhhcccceeccchhccCCC
Confidence            7999999999766555543  2  459999985 59999988775552             24555556665554 2234


Q ss_pred             cCCCccEEEEecccc--CCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHH
Q 029065          119 VAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQM  170 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~  170 (199)
                      ..+.+|+|++.=++-  ++...+.++..+.++|||||.+++.+..+..-...+|
T Consensus       141 ~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF  194 (264)
T KOG2361|consen  141 EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF  194 (264)
T ss_pred             CcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence            457899998765553  4678999999999999999999999988776544444

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=1.4e-07  Score=75.59  Aligned_cols=103  Identities=16%  Similarity=0.036  Sum_probs=81.2

Q ss_pred             CCCCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      -....|++|||.|.|+|.++..+|+. |  .+|+..|+ .+..+.|++|+...++           .+++.....|..+.
T Consensus        90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----------~d~v~~~~~Dv~~~  158 (256)
T COG2519          90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----------GDRVTLKLGDVREG  158 (256)
T ss_pred             cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----------ccceEEEecccccc
Confidence            34557899999999999999999974 4  46999999 6699999999988764           34477777777544


Q ss_pred             ccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          114 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       114 ~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..    ...||.|+..-     .++-.+++.+.++|+|||.+.+--|
T Consensus       159 ~~----~~~vDav~LDm-----p~PW~~le~~~~~Lkpgg~~~~y~P  196 (256)
T COG2519         159 ID----EEDVDAVFLDL-----PDPWNVLEHVSDALKPGGVVVVYSP  196 (256)
T ss_pred             cc----ccccCEEEEcC-----CChHHHHHHHHHHhCCCcEEEEEcC
Confidence            32    33899998853     5888999999999999998655444

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=4.5e-08  Score=85.03  Aligned_cols=126  Identities=16%  Similarity=0.147  Sum_probs=91.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .+.+|||+-||.|.+|+.+|+...+|+|+|+ +++++.|++|++.|+.            .++++...+-+.........
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i------------~N~~f~~~~ae~~~~~~~~~  360 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI------------DNVEFIAGDAEEFTPAWWEG  360 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC------------CcEEEEeCCHHHHhhhcccc
Confidence            3568999999999999999999999999999 5599999999999984            46888877765544332223


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecC
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  185 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  185 (199)
                      ..+|.|+..+|=  ...-..+++.+.++ +|..++|++-..   ..+.+-+..+ ..++.++++..
T Consensus       361 ~~~d~VvvDPPR--~G~~~~~lk~l~~~-~p~~IvYVSCNP---~TlaRDl~~L~~~gy~i~~v~~  420 (432)
T COG2265         361 YKPDVVVVDPPR--AGADREVLKQLAKL-KPKRIVYVSCNP---ATLARDLAILASTGYEIERVQP  420 (432)
T ss_pred             CCCCEEEECCCC--CCCCHHHHHHHHhc-CCCcEEEEeCCH---HHHHHHHHHHHhCCeEEEEEEE
Confidence            579999998763  22334666666655 677788997754   3334444444 45677776654

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.83  E-value=2.5e-08  Score=77.22  Aligned_cols=121  Identities=21%  Similarity=0.315  Sum_probs=79.5

Q ss_pred             cEEEeCCCcChHHHHHHhhC--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           45 RVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      +++|||+|.|.+|+.+|...  .+|+.+|. ..-+...+..+..-+            .+++++.+...++    .....
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~------------L~nv~v~~~R~E~----~~~~~  114 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELG------------LSNVEVINGRAEE----PEYRE  114 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------------SSEEEEES-HHH----TTTTT
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhC------------CCCEEEEEeeecc----cccCC
Confidence            79999999999999999764  45999997 334444444444444            3368888866654    23467


Q ss_pred             CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh-CCeEEEecC
Q 029065          122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPK  185 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~v~~~~~  185 (199)
                      .||+|++..+    ..+..++..+..+++++|.+++-......+........+.. +.++..+..
T Consensus       115 ~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~~v~~  175 (184)
T PF02527_consen  115 SFDVVTARAV----APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVLSVPE  175 (184)
T ss_dssp             -EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEEEEEE
T ss_pred             CccEEEeehh----cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEeeecc
Confidence            8999999876    68899999999999999986665443333334444444432 344444443

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.82  E-value=1.8e-08  Score=82.06  Aligned_cols=75  Identities=20%  Similarity=0.240  Sum_probs=59.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||||||+|.++..++..+.+|+++|+++ +++.+++++...              .++++.+.|+....     
T Consensus        28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~--------------~~v~ii~~D~~~~~-----   88 (258)
T PRK14896         28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA--------------GNVEIIEGDALKVD-----   88 (258)
T ss_pred             CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC--------------CCEEEEEeccccCC-----
Confidence            4678999999999999999999988999999955 988888776431              26788888876432     


Q ss_pred             CCCccEEEEeccccC
Q 029065          120 APPFDYIIGTDVVYA  134 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~  134 (199)
                      ...||.|++|.+++.
T Consensus        89 ~~~~d~Vv~NlPy~i  103 (258)
T PRK14896         89 LPEFNKVVSNLPYQI  103 (258)
T ss_pred             chhceEEEEcCCccc
Confidence            235899999988654

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.82  E-value=3.3e-08  Score=81.19  Aligned_cols=75  Identities=16%  Similarity=0.128  Sum_probs=57.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|.++..++..+.+|+++|+++ +++.+++++..               .++++.+.|+......   +
T Consensus        42 ~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---------------~~v~~i~~D~~~~~~~---~  103 (272)
T PRK00274         42 PGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---------------DNLTIIEGDALKVDLS---E  103 (272)
T ss_pred             CcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---------------CceEEEEChhhcCCHH---H
Confidence            567999999999999999999888999999954 99988876532               2678888887654311   1


Q ss_pred             CCccEEEEeccccC
Q 029065          121 PPFDYIIGTDVVYA  134 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~  134 (199)
                      -.++.|++|.+++-
T Consensus       104 ~~~~~vv~NlPY~i  117 (272)
T PRK00274        104 LQPLKVVANLPYNI  117 (272)
T ss_pred             cCcceEEEeCCccc
Confidence            11589999987554

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.80  E-value=3e-08  Score=84.75  Aligned_cols=98  Identities=18%  Similarity=0.231  Sum_probs=75.9

Q ss_pred             CcEEEeCCCcChHHHHHHhh--CC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           44 KRVIELGAGCGVAGFGMALL--GC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~--g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+|||+.||+|..|+.+++.  |+ +|+++|++ ++++.+++|+..|+.            .++++.+.|.....  ...
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------------~~~~v~~~Da~~~l--~~~  111 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------------ENIEVPNEDAANVL--RYR  111 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEchhHHHHH--HHh
Confidence            58999999999999999987  55 49999995 599999999999863            35666666654221  112


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..+||+|...+  |.  ....++....+.++++|.++++-
T Consensus       112 ~~~fDvIdlDP--fG--s~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       112 NRKFHVIDIDP--FG--TPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             CCCCCEEEeCC--CC--CcHHHHHHHHHhcccCCEEEEEe
Confidence            35799999955  43  44578999999999999999984

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.80  E-value=3.4e-08  Score=86.25  Aligned_cols=98  Identities=18%  Similarity=0.193  Sum_probs=69.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC------CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG------CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g------~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      +++.|||+|||+|.++..+++.+      .+|++++-+. +....++.+..|+           +.++|++.+.|.++.+
T Consensus       186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~-----------w~~~V~vi~~d~r~v~  254 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG-----------WGDKVTVIHGDMREVE  254 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT-----------TTTTEEEEES-TTTSC
T ss_pred             cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC-----------CCCeEEEEeCcccCCC
Confidence            57899999999999998888775      2599999855 6655566556664           3568999998887654


Q ss_pred             cccccCCCccEEEEecc--ccCCcChHHHHHHHHHhcCCCcE
Q 029065          115 HIKAVAPPFDYIIGTDV--VYAEHLLEPLLQTIFALSGPKTT  154 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~--~~~~~~~~~~l~~l~~~l~~~g~  154 (199)
                      .    ..+.|+||+--+  +...+.....+....+.|+|+|+
T Consensus       255 l----pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi  292 (448)
T PF05185_consen  255 L----PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGI  292 (448)
T ss_dssp             H----SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEE
T ss_pred             C----CCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCE
Confidence            2    348999997532  33356777889999999999985

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.76  E-value=2.5e-08  Score=82.66  Aligned_cols=79  Identities=19%  Similarity=0.204  Sum_probs=62.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||||||+|.++..++..+.+|+++|++. +++.+++++...+.           ..++++.+.|+...+     
T Consensus        35 ~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-----------~~~v~ii~~Dal~~~-----   98 (294)
T PTZ00338         35 KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-----------ASKLEVIEGDALKTE-----   98 (294)
T ss_pred             CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-----------CCcEEEEECCHhhhc-----
Confidence            3567999999999999999999888999999955 99999998876532           347888888875432     


Q ss_pred             CCCccEEEEeccccCC
Q 029065          120 APPFDYIIGTDVVYAE  135 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~  135 (199)
                      ...||+|++|.+++..
T Consensus        99 ~~~~d~VvaNlPY~Is  114 (294)
T PTZ00338         99 FPYFDVCVANVPYQIS  114 (294)
T ss_pred             ccccCEEEecCCcccC
Confidence            2468999998776654

>PLN02366 spermidine synthase

Probab=98.76  E-value=1.8e-07  Score=78.00  Aligned_cols=128  Identities=14%  Similarity=0.052  Sum_probs=82.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +.++||+||||.|.....+++..  .+|+.+|+++ +++.+++.+...+..        -...++++...|....-. ..
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--------~~dpRv~vi~~Da~~~l~-~~  161 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--------FDDPRVNLHIGDGVEFLK-NA  161 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--------cCCCceEEEEChHHHHHh-hc
Confidence            46899999999999888888763  4699999955 999999987542110        013478888777432211 11


Q ss_pred             cCCCccEEEEeccccC-Cc---ChHHHHHHHHHhcCCCcEEEEEEE--ecChhHHHHHHHHHHhCC
Q 029065          119 VAPPFDYIIGTDVVYA-EH---LLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNF  178 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~-~~---~~~~~l~~l~~~l~~~g~i~i~~~--~~~~~~~~~~~~~~~~~~  178 (199)
                      ..++||+|++...--. ..   .-..+++.+++.|+|+|.+.+-..  -........+.+.+...|
T Consensus       162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F  227 (308)
T PLN02366        162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF  227 (308)
T ss_pred             cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence            1468999998532111 11   245789999999999998755222  122334455556666555

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.74  E-value=5.9e-08  Score=78.47  Aligned_cols=104  Identities=15%  Similarity=0.053  Sum_probs=79.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~  116 (199)
                      ..++|||||+++|.-++++|+.   +++|+.+|. ++..+.|++++...+.           ..+|++...+..+... +
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----------~~~I~~~~G~a~e~L~~l  147 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----------AHKIDFREGPALPVLDQM  147 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeccHHHHHHHH
Confidence            4679999999999999999864   568999999 4588999999998875           4578888876643211 1


Q ss_pred             cc---cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ~~---~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..   ..++||+|+...   ....+...++.+.++|++||.+++-.
T Consensus       148 ~~~~~~~~~fD~iFiDa---dK~~Y~~y~~~~l~ll~~GGviv~DN  190 (247)
T PLN02589        148 IEDGKYHGTFDFIFVDA---DKDNYINYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_pred             HhccccCCcccEEEecC---CHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence            00   126899999873   35677888899999999999866543

>PRK01581 speE spermidine synthase; Validated

Probab=98.74  E-value=6.3e-08  Score=81.87  Aligned_cols=107  Identities=19%  Similarity=0.097  Sum_probs=71.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHH---HhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVE---WNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ..++||+||||.|.....+.+..  .+|+++|++ ++++.|+....   .+...        -...++++...|....  
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~--------~~DpRV~vvi~Da~~f--  219 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA--------FFDNRVNVHVCDAKEF--  219 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc--------CCCCceEEEECcHHHH--
Confidence            35799999999998777777654  579999995 49999986221   11100        0134788877776532  


Q ss_pred             ccccCCCccEEEEeccccC-----CcChHHHHHHHHHhcCCCcEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYA-----EHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~-----~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      .....+.||+|++.-+--.     .-.-..+++.+.+.|+|||++++.
T Consensus       220 L~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        220 LSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             HHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            1223468999998732100     012367899999999999987664

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.72  E-value=1.2e-07  Score=74.77  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=83.0

Q ss_pred             CCcEEEeCCCcChHHHHHHhhC--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +++++|||+|.|++|+.+|...  .+|+.+|. ..-+...+......+            .+++++.+...++...    
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~------------L~nv~i~~~RaE~~~~----  131 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELG------------LENVEIVHGRAEEFGQ----  131 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhC------------CCCeEEehhhHhhccc----
Confidence            6899999999999999999653  45999996 323333333333333            3367877755543321    


Q ss_pred             CCC-ccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecCCCcCc
Q 029065          120 APP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKEST  190 (199)
Q Consensus       120 ~~~-fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~  190 (199)
                      ..+ ||+|.+..+    .....+...+..++++||.+++-.-....+......... ..++.+..+..-..+.
T Consensus       132 ~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p~  200 (215)
T COG0357         132 EKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTVPE  200 (215)
T ss_pred             ccccCcEEEeehc----cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeecCC
Confidence            123 999999776    789999999999999998764333233333334443333 3456776665555444

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.71  E-value=1.1e-07  Score=76.55  Aligned_cols=95  Identities=23%  Similarity=0.167  Sum_probs=74.0

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+..++||||+|.|-.+..++..-.+|++|+.+. |...    +...|.            .  .....+|.+.      
T Consensus        93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~r----L~~kg~------------~--vl~~~~w~~~------  148 (265)
T PF05219_consen   93 WKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWR----LSKKGF------------T--VLDIDDWQQT------  148 (265)
T ss_pred             ccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHH----HHhCCC------------e--EEehhhhhcc------
Confidence            4567999999999999999999988999999976 5333    333332            1  1222345422      


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      +.+||+|.+-+++=....+..+++.+++.|+|+|.++++-
T Consensus       149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            4589999999999888999999999999999999988774

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.68  E-value=3.2e-08  Score=78.53  Aligned_cols=102  Identities=18%  Similarity=0.174  Sum_probs=68.6

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065           44 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  122 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  122 (199)
                      +.++|+|||+|..++.+|..-.+|+++|+++ ||+.|++.....-.         +....+  ..-+.   ..+...+++
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~---------~t~~~m--s~~~~---v~L~g~e~S  100 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYC---------HTPSTM--SSDEM---VDLLGGEES  100 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccc---------cCCccc--ccccc---ccccCCCcc
Confidence            3899999999988899998877899999955 99987664221110         001111  11010   111122679


Q ss_pred             ccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          123 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       123 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      .|+|+++.++++. +.+.+.+.+.++|+++|-++....
T Consensus       101 VDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iavW~  137 (261)
T KOG3010|consen  101 VDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAVWN  137 (261)
T ss_pred             eeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEEEE
Confidence            9999999887654 678899999999998774444443

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.67  E-value=2.2e-07  Score=72.72  Aligned_cols=105  Identities=15%  Similarity=0.104  Sum_probs=74.9

Q ss_pred             cEEEeCCCcChHHHHHHhh--CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           45 RVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~--g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      .+||||||.|-..+.+|..  ...++|+|+ ...+..+...+...+            ..++.+.+.|.......-..++
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~------------l~Nv~~~~~da~~~l~~~~~~~   87 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG------------LKNVRFLRGDARELLRRLFPPG   87 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT------------TSSEEEEES-CTTHHHHHSTTT
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc------------ccceEEEEccHHHHHhhcccCC
Confidence            8999999999988888876  445999998 557777777777665            5689999988765322223357


Q ss_pred             CccEEEEe--ccccCCc------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          122 PFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       122 ~fD~Ii~~--~~~~~~~------~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .+|-|..+  ||-.-..      .-..++..+.+.|+|||.+++.+-.
T Consensus        88 ~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~  135 (195)
T PF02390_consen   88 SVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV  135 (195)
T ss_dssp             SEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred             chheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence            88988766  3321111      4678999999999999999987754

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.67  E-value=2e-07  Score=73.26  Aligned_cols=107  Identities=15%  Similarity=0.059  Sum_probs=73.2

Q ss_pred             CCCCcEEEeCCCcChHHHHHH-hhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la-~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..-.+.||.|||.|.++-.+. ....+|..+|. +..++.|++.+....            ....++.+....+.   .+
T Consensus        54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~------------~~v~~~~~~gLQ~f---~P  118 (218)
T PF05891_consen   54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN------------PRVGEFYCVGLQDF---TP  118 (218)
T ss_dssp             ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG------------CCEEEEEES-GGG------
T ss_pred             CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC------------CCcceEEecCHhhc---cC
Confidence            345799999999999997665 45556999998 559999987654421            11234555444322   23


Q ss_pred             cCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..++||+|++-.++.|  ..++..++..|+..|+|+|.|++-....
T Consensus       119 ~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~  164 (218)
T PF05891_consen  119 EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVS  164 (218)
T ss_dssp             -TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence            3568999999999987  5678999999999999999998887653

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.65  E-value=1.1e-06  Score=71.03  Aligned_cols=107  Identities=18%  Similarity=0.104  Sum_probs=75.8

Q ss_pred             ccCCCCCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeee
Q 029065           35 RFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW  110 (199)
Q Consensus        35 ~~~~~~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~  110 (199)
                      ..-...-.|++|||-|.|+|.++.++++. |  .+|+..|. .+..+.|++|+..+++           ..++.+.+.|+
T Consensus        33 ~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----------~~~v~~~~~Dv  101 (247)
T PF08704_consen   33 LMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----------DDNVTVHHRDV  101 (247)
T ss_dssp             HHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----------CTTEEEEES-G
T ss_pred             HHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----------CCCceeEecce
Confidence            33445668999999999999999999975 3  47999999 5599999999999875           45889999888


Q ss_pred             CCCccccccCCCccEEEEeccccCCcChHHHHHHHHHhc-CCCcEEEE
Q 029065          111 GNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTILL  157 (199)
Q Consensus       111 ~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l-~~~g~i~i  157 (199)
                      ...-........+|.|+..-     ..+-..+..+.+.| ++||.+.+
T Consensus       102 ~~~g~~~~~~~~~DavfLDl-----p~Pw~~i~~~~~~L~~~gG~i~~  144 (247)
T PF08704_consen  102 CEEGFDEELESDFDAVFLDL-----PDPWEAIPHAKRALKKPGGRICC  144 (247)
T ss_dssp             GCG--STT-TTSEEEEEEES-----SSGGGGHHHHHHHE-EEEEEEEE
T ss_pred             ecccccccccCcccEEEEeC-----CCHHHHHHHHHHHHhcCCceEEE
Confidence            53211112246799988853     47778899999999 77776443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK04148 hypothetical protein; Provisional

Probab=98.63  E-value=4.2e-07  Score=66.54  Aligned_cols=70  Identities=23%  Similarity=0.185  Sum_probs=51.8

Q ss_pred             CCCCcEEEeCCCcCh-HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGV-AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~-~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++++|||+|||+|. .+..++..|.+|+++|+++ +++.++.+                   .+++...|+.+.+..  
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-------------------~~~~v~dDlf~p~~~--   73 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-------------------GLNAFVDDLFNPNLE--   73 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-------------------CCeEEECcCCCCCHH--
Confidence            356789999999996 9999999999999999955 76666554                   246677777655422  


Q ss_pred             cCCCccEEEEecc
Q 029065          119 VAPPFDYIIGTDV  131 (199)
Q Consensus       119 ~~~~fD~Ii~~~~  131 (199)
                      .-+.+|+|.+..+
T Consensus        74 ~y~~a~liysirp   86 (134)
T PRK04148         74 IYKNAKLIYSIRP   86 (134)
T ss_pred             HHhcCCEEEEeCC
Confidence            1257888887643

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=98.62  E-value=3.7e-09  Score=85.74  Aligned_cols=150  Identities=19%  Similarity=0.146  Sum_probs=95.5

Q ss_pred             CCCceEEEeecCcceeeccccccccCccCCCCCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHH-HHHHHHH
Q 029065            9 PSTSVINLEVLGHQLQFSQEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPL-LKRNVEW   85 (199)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~-a~~~~~~   85 (199)
                      |...+.++.+|.+.+.+........  -+...+.+|+|||+|||+|+.++.+...|+ .|.+.|++. +++. .-.|+..
T Consensus        85 p~vyEGg~k~wecS~dl~~~l~~e~--~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~  162 (282)
T KOG2920|consen   85 PGVYEGGLKLWECSVDLLPYLKEEI--GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILV  162 (282)
T ss_pred             CceeecceEEeecHHHHHHHHHHHh--hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceec
Confidence            3445567777877777765532221  134567899999999999999999999984 599999854 6632 2222222


Q ss_pred             hhhccccCCCCCCCCCcEEEEEe---eeCCCccccccCCCccEEEEeccccCCcChHHH-HHHHHHhcCCCcEEEEEEEe
Q 029065           86 NTSRISQMNPGSDLLGSIQAVEL---DWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL-LQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus        86 ~~~~~~~~~~~~~~~~~i~~~~~---d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~-l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +...-.   -.++....+...+-   ||.....   ..-.||+|.++.++|.....+.+ ......+++++|.+|++.+.
T Consensus       163 ~~~~~~---~~~e~~~~~~i~~s~l~dg~~~~t---~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~  236 (282)
T KOG2920|consen  163 NSHAGV---EEKENHKVDEILNSLLSDGVFNHT---ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKK  236 (282)
T ss_pred             chhhhh---hhhhcccceeccccccccchhhhc---cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHh
Confidence            211000   00011112222233   5521110   01389999999999999988888 77888889999999998776


Q ss_pred             cChhH
Q 029065          162 RSTSV  166 (199)
Q Consensus       162 ~~~~~  166 (199)
                      -+..+
T Consensus       237 ~yFgV  241 (282)
T KOG2920|consen  237 LYFGV  241 (282)
T ss_pred             hccCc
Confidence            55443

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.62  E-value=4.5e-07  Score=75.91  Aligned_cols=104  Identities=21%  Similarity=0.218  Sum_probs=79.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe-eeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~~  119 (199)
                      +|..|||=.||||-+-+.+...|++|+|+|+.. |++-|+.|+..-+.            ....+... |..+   .+..
T Consensus       197 ~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i------------~~~~~~~~~Da~~---lpl~  261 (347)
T COG1041         197 RGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI------------EDYPVLKVLDATN---LPLR  261 (347)
T ss_pred             cCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc------------CceeEEEeccccc---CCCC
Confidence            578999999999999999999999999999965 99999999877642            12222222 4433   3333


Q ss_pred             CCCccEEEEeccccCC---------cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          120 APPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~---------~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      +..+|.|++.+|+--.         +.+..+++.+.+.|++||.+.++.+
T Consensus       262 ~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         262 DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            4569999997775322         2378889999999999999988887

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.61  E-value=1.3e-07  Score=71.70  Aligned_cols=78  Identities=21%  Similarity=0.049  Sum_probs=54.7

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065           44 KRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  122 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  122 (199)
                      ..|+|+.||.|-.++.+|+.+.+|+++|++ .-++.|+.|++.-|.           .++|++.+.||.+..........
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv-----------~~~I~~i~gD~~~~~~~~~~~~~   69 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGV-----------ADNIDFICGDFFELLKRLKSNKI   69 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT------------GGGEEEEES-HHHHGGGB-----
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCCHHHHHhhcccccc
Confidence            369999999999999999999999999995 599999999988864           45899999999754321111122


Q ss_pred             ccEEEEeccc
Q 029065          123 FDYIIGTDVV  132 (199)
Q Consensus       123 fD~Ii~~~~~  132 (199)
                      ||+|++++|.
T Consensus        70 ~D~vFlSPPW   79 (163)
T PF09445_consen   70 FDVVFLSPPW   79 (163)
T ss_dssp             -SEEEE---B
T ss_pred             ccEEEECCCC
Confidence            8999999887

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.60  E-value=7.3e-07  Score=75.83  Aligned_cols=121  Identities=18%  Similarity=0.190  Sum_probs=76.6

Q ss_pred             cEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc--------
Q 029065           45 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--------  115 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--------  115 (199)
                      +|||+-||+|.+|+.+|..+.+|+|+|. .++++.|++|+..|+.            .++++...+.++...        
T Consensus       199 ~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i------------~n~~f~~~~~~~~~~~~~~~r~~  266 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI------------DNVEFIRGDAEDFAKALAKAREF  266 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE--SHHCCCHHCCS-GG
T ss_pred             cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC------------CcceEEEeeccchhHHHHhhHHH
Confidence            7999999999999999999999999998 5599999999999984            478887765432210        


Q ss_pred             --cc---ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecC
Q 029065          116 --IK---AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK  185 (199)
Q Consensus       116 --~~---~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (199)
                        ..   .....+|+|+..||=-.  .-..+++.+.+   ..-++|++-.+.   .+.+=+..+.++|+++.+..
T Consensus       267 ~~~~~~~~~~~~~d~vilDPPR~G--~~~~~~~~~~~---~~~ivYvSCnP~---tlaRDl~~L~~~y~~~~v~~  333 (352)
T PF05958_consen  267 NRLKGIDLKSFKFDAVILDPPRAG--LDEKVIELIKK---LKRIVYVSCNPA---TLARDLKILKEGYKLEKVQP  333 (352)
T ss_dssp             TTGGGS-GGCTTESEEEE---TT---SCHHHHHHHHH---SSEEEEEES-HH---HHHHHHHHHHCCEEEEEEEE
T ss_pred             HhhhhhhhhhcCCCEEEEcCCCCC--chHHHHHHHhc---CCeEEEEECCHH---HHHHHHHHHhhcCEEEEEEE
Confidence              00   11236899998776332  22455665544   356778876542   22222234456888876654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.60  E-value=9.3e-08  Score=76.44  Aligned_cols=95  Identities=18%  Similarity=0.128  Sum_probs=57.9

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHH-HHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPL-LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~-a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ..+++++|||+|||+|.++..++..|+. |+++|++. ++.. .+.+..-....          ..+++  ..+|.+.. 
T Consensus        72 ~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~----------~~ni~--~~~~~~~~-  138 (228)
T TIGR00478        72 IDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLE----------RTNIR--YVTPADIF-  138 (228)
T ss_pred             CCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEee----------cCCcc--cCCHhHcC-
Confidence            4578999999999999999999999875 99999954 5543 22221100000          01122  23343221 


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                        ..-..+|+++++-.        .++..+..+|++ |.+++
T Consensus       139 --~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       139 --PDFATFDVSFISLI--------SILPELDLLLNP-NDLTL  169 (228)
T ss_pred             --CCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEE
Confidence              11236777776532        357788888888 65443

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.60  E-value=1.7e-07  Score=72.38  Aligned_cols=103  Identities=18%  Similarity=0.200  Sum_probs=70.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCe-----------EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEee
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCN-----------VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD  109 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~-----------v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d  109 (199)
                      ++..|||-.||+|.+.+.++..+..           ++|.|++ ++++.+++|+...+.           ...+.+.+.|
T Consensus        28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----------~~~i~~~~~D   96 (179)
T PF01170_consen   28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----------EDYIDFIQWD   96 (179)
T ss_dssp             TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------------CGGEEEEE--
T ss_pred             CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----------CCceEEEecc
Confidence            4679999999999999999876443           6799995 599999999987764           3457787777


Q ss_pred             eCCCccccccCCCccEEEEeccccCC--------cChHHHHHHHHHhcCCCcEEEEEE
Q 029065          110 WGNEDHIKAVAPPFDYIIGTDVVYAE--------HLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       110 ~~~~~~~~~~~~~fD~Ii~~~~~~~~--------~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .....   ...+.+|+|++++|+...        ..+..+++.+.+.+++ ..+++..
T Consensus        97 ~~~l~---~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~  150 (179)
T PF01170_consen   97 ARELP---LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT  150 (179)
T ss_dssp             GGGGG---GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred             hhhcc---cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence            65443   345689999999887542        2356677788888888 3444433

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.55  E-value=1.4e-06  Score=73.21  Aligned_cols=103  Identities=20%  Similarity=0.137  Sum_probs=79.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .|.+|||+.||.|..++.+|+.|+. |+++|++ .+++.+++|+.+|+.           ...+...++|-....   ..
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----------~~~v~~i~gD~rev~---~~  253 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----------EGRVEPILGDAREVA---PE  253 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----------cceeeEEeccHHHhh---hc
Confidence            4899999999999999999999987 9999995 599999999999975           234777887765432   11


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .+.+|-|+.+-+.    ....++......++++|.+.+-....
T Consensus       254 ~~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~  292 (341)
T COG2520         254 LGVADRIIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVP  292 (341)
T ss_pred             cccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccc
Confidence            2789999998653    44566777777777888765544433

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.55  E-value=7.7e-07  Score=67.36  Aligned_cols=85  Identities=11%  Similarity=-0.035  Sum_probs=64.3

Q ss_pred             EEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCCcChHHHHHHHH
Q 029065           68 ITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIF  146 (199)
Q Consensus        68 ~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~  146 (199)
                      +|+|+++ |++.|+++......         ....++++...|..+.   +..++.||+|+++..+.+..+...+++.+.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~---------~~~~~i~~~~~d~~~l---p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~   68 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKAR---------SCYKCIEWIEGDAIDL---PFDDCEFDAVTMGYGLRNVVDRLRAMKEMY   68 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccc---------cCCCceEEEEechhhC---CCCCCCeeEEEecchhhcCCCHHHHHHHHH
Confidence            4799965 99999876543211         0123678888776543   344678999999988888889999999999


Q ss_pred             HhcCCCcEEEEEEEecCh
Q 029065          147 ALSGPKTTILLGYEIRST  164 (199)
Q Consensus       147 ~~l~~~g~i~i~~~~~~~  164 (199)
                      ++|+|||.+++.+.....
T Consensus        69 rvLkpGG~l~i~d~~~~~   86 (160)
T PLN02232         69 RVLKPGSRVSILDFNKSN   86 (160)
T ss_pred             HHcCcCeEEEEEECCCCC
Confidence            999999999888765443

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.52  E-value=3e-07  Score=74.69  Aligned_cols=73  Identities=18%  Similarity=0.229  Sum_probs=55.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|.++..++..+.+|+++|+++ +++.++.+...              ..++++.+.|+.....     
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--------------~~~v~v~~~D~~~~~~-----   89 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--------------YERLEVIEGDALKVDL-----   89 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--------------CCcEEEEECchhcCCh-----
Confidence            568999999999999999999998899999955 88888776532              2367788877754432     


Q ss_pred             CCcc---EEEEecccc
Q 029065          121 PPFD---YIIGTDVVY  133 (199)
Q Consensus       121 ~~fD---~Ii~~~~~~  133 (199)
                      ..||   +|+++-+++
T Consensus        90 ~~~d~~~~vvsNlPy~  105 (253)
T TIGR00755        90 PDFPKQLKVVSNLPYN  105 (253)
T ss_pred             hHcCCcceEEEcCChh
Confidence            1355   788876643

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.49  E-value=6e-07  Score=75.63  Aligned_cols=119  Identities=13%  Similarity=0.013  Sum_probs=67.2

Q ss_pred             CCCcEEEeCCCcCh-HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc---c
Q 029065           42 KGKRVIELGAGCGV-AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---I  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~-~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~  116 (199)
                      .+.+|||||||-|- +.-+....-..++|+|++. .++.|++.............+  .-.-...+...|......   .
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~--~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQY--RFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTS--EECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccc--cccchhheeccccccchhhhhc
Confidence            67899999999764 5555444445699999955 889998877322110000000  000012333333322211   1


Q ss_pred             cccCCCccEEEEeccccC----CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 KAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .....+||+|=+=-.+++    ......++..+...|+|||.++.+++..
T Consensus       140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~  189 (331)
T PF03291_consen  140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS  189 (331)
T ss_dssp             SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred             cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence            111358999976655543    3457779999999999999999888753

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.48  E-value=6.5e-07  Score=69.98  Aligned_cols=107  Identities=17%  Similarity=0.129  Sum_probs=74.0

Q ss_pred             cEEEeCCCcChHHHHHHhhCCe--EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc----
Q 029065           45 RVIELGAGCGVAGFGMALLGCN--VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK----  117 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~g~~--v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----  117 (199)
                      +|||||||||-.+.++|..-..  ..-+|.+. .+.-++..+...+..        +...   ...+|........    
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~--------Nv~~---P~~lDv~~~~w~~~~~~   96 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP--------NVRP---PLALDVSAPPWPWELPA   96 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc--------ccCC---CeEeecCCCCCcccccc
Confidence            5999999999999999987554  66678854 555565555544421        1122   2334544432211    


Q ss_pred             -ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          118 -AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       118 -~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                       ...+.||.|++..+++-  .+..+.+++...++|++||.+++=.|..
T Consensus        97 ~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~  144 (204)
T PF06080_consen   97 PLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFN  144 (204)
T ss_pred             ccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcc
Confidence             13468999999999876  4568899999999999999987766653

The function of this family is unknown.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.46  E-value=2.1e-06  Score=68.62  Aligned_cols=107  Identities=13%  Similarity=0.020  Sum_probs=78.2

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCe--EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           44 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~--v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ..+||||||.|-.-+.+|....+  ++|+|+ ...+..|...+...+            ..++.+.+.|.......-..+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~------------l~Nlri~~~DA~~~l~~~~~~  117 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELG------------LKNLRLLCGDAVEVLDYLIPD  117 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcC------------CCcEEEEcCCHHHHHHhcCCC
Confidence            48999999999999999988765  999998 556777767666665            237787777765443333334


Q ss_pred             CCccEEEEe--ccccCCc------ChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~--~~~~~~~------~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ++.|-|..+  ||-.-..      -...+++.+.+.|+|||.+++++-..
T Consensus       118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~  167 (227)
T COG0220         118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE  167 (227)
T ss_pred             CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence            588888766  3322111      36789999999999999999988553

>PLN02823 spermine synthase

Probab=98.42  E-value=4.2e-06  Score=70.63  Aligned_cols=127  Identities=17%  Similarity=0.158  Sum_probs=80.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C-CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +.++||.||+|.|..+..+.+. + .+|+++|+ +++++.|++.+..+....        ...++++...|-...-  ..
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~--------~dprv~v~~~Da~~~L--~~  172 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAF--------CDKRLELIINDARAEL--EK  172 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccc--------cCCceEEEEChhHHHH--hh
Confidence            4579999999999888877765 3 46999999 459999998875442100        1347777776654322  22


Q ss_pred             cCCCccEEEEec--ccc-CC---cChHHHHH-HHHHhcCCCcEEEEEEEe----cChhHHHHHHHHHHhCC
Q 029065          119 VAPPFDYIIGTD--VVY-AE---HLLEPLLQ-TIFALSGPKTTILLGYEI----RSTSVHEQMLQMWKSNF  178 (199)
Q Consensus       119 ~~~~fD~Ii~~~--~~~-~~---~~~~~~l~-~l~~~l~~~g~i~i~~~~----~~~~~~~~~~~~~~~~~  178 (199)
                      ..++||+|+..-  +.- ..   -.-..+++ .+++.|+|+|.+++-...    ..........+.+.+-|
T Consensus       173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF  243 (336)
T PLN02823        173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVF  243 (336)
T ss_pred             CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhC
Confidence            356899999862  110 00   12346777 899999999987654221    12233444555555544

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.37  E-value=1.7e-06  Score=68.55  Aligned_cols=128  Identities=20%  Similarity=0.193  Sum_probs=88.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +|.+|||-..|-|-.++.+.++|| .|+.++.+ .+++.|..|-=..++.          ...|++...|..+. .....
T Consensus       134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~----------~~~i~iilGD~~e~-V~~~~  202 (287)
T COG2521         134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF----------EIAIKIILGDAYEV-VKDFD  202 (287)
T ss_pred             cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc----------ccccEEecccHHHH-HhcCC
Confidence            588999999999999999999999 69999984 4888886653111110          11356665554322 11234


Q ss_pred             CCCccEEEEeccccCCc---ChHHHHHHHHHhcCCCcEE--EEEEEe---cChhHHHHHHHHHHh-CCeE
Q 029065          120 APPFDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTTI--LLGYEI---RSTSVHEQMLQMWKS-NFNV  180 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~---~~~~~l~~l~~~l~~~g~i--~i~~~~---~~~~~~~~~~~~~~~-~~~v  180 (199)
                      +.+||+||-.++=+..+   .-..|.+.+.++|+|||++  |+..+.   |..++.....+.+.+ +|++
T Consensus       203 D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~  272 (287)
T COG2521         203 DESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEV  272 (287)
T ss_pred             ccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCcee
Confidence            67899999888776633   4567889999999999986  555554   344556666677754 7874

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.36  E-value=2.7e-06  Score=70.37  Aligned_cols=84  Identities=23%  Similarity=0.279  Sum_probs=47.5

Q ss_pred             CCCcEEEeCCCcC-hHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHh-hhccccCCCCCCCCCcEEEEEeeeCCC--cc
Q 029065           42 KGKRVIELGAGCG-VAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNE--DH  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G-~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~  115 (199)
                      ...++||||+|.- ..++..++. |-+++|+|+++ .++.|++|+..| ++           .++|++....=...  ..
T Consensus       102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----------~~~I~l~~~~~~~~i~~~  170 (299)
T PF05971_consen  102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----------ESRIELRKQKNPDNIFDG  170 (299)
T ss_dssp             ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------------TTTEEEEE--ST-SSTTT
T ss_pred             cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----------ccceEEEEcCCccccchh
Confidence            3568999999985 556666654 78899999955 999999999999 54           45777765431111  11


Q ss_pred             ccccCCCccEEEEeccccCCc
Q 029065          116 IKAVAPPFDYIIGTDVVYAEH  136 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~  136 (199)
                      .....+.||+.+|++|+|...
T Consensus       171 i~~~~e~~dftmCNPPFy~s~  191 (299)
T PF05971_consen  171 IIQPNERFDFTMCNPPFYSSQ  191 (299)
T ss_dssp             STT--S-EEEEEE-----SS-
T ss_pred             hhcccceeeEEecCCccccCh
Confidence            112235899999999999854

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.36  E-value=7.9e-06  Score=73.05  Aligned_cols=131  Identities=11%  Similarity=0.022  Sum_probs=80.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC----------CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeee
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG----------CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW  110 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g----------~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~  110 (199)
                      ...+|||.+||+|.+.+.++...          ..+++.|+++ +++.++.++...+.            ..+.+...|.
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------------~~~~i~~~d~   98 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------------LEINVINFNS   98 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------------CCceeeeccc
Confidence            45699999999998777776432          3489999955 99999988765531            0123333332


Q ss_pred             CCCcc--ccccCCCccEEEEeccccCCcC----------------------------------------------hHHH-
Q 029065          111 GNEDH--IKAVAPPFDYIIGTDVVYAEHL----------------------------------------------LEPL-  141 (199)
Q Consensus       111 ~~~~~--~~~~~~~fD~Ii~~~~~~~~~~----------------------------------------------~~~~-  141 (199)
                      .....  .....+.||+||+|+|+-....                                              +..+ 
T Consensus        99 l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f  178 (524)
T TIGR02987        99 LSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVF  178 (524)
T ss_pred             ccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHH
Confidence            21110  0112358999999999853210                                              1112 


Q ss_pred             HHHHHHhcCCCcEEEEEEEec--ChhHHHHHHHHHHhCCeEEEec
Q 029065          142 LQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNVKLVP  184 (199)
Q Consensus       142 l~~l~~~l~~~g~i~i~~~~~--~~~~~~~~~~~~~~~~~v~~~~  184 (199)
                      ++...++|+++|.+.+..|..  .......+.+.+.....+..+.
T Consensus       179 ~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~  223 (524)
T TIGR02987       179 EEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNNRLINCIQ  223 (524)
T ss_pred             HHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEE
Confidence            356778899999988877753  1222345666666656665443

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.32  E-value=2.9e-06  Score=70.09  Aligned_cols=115  Identities=22%  Similarity=0.238  Sum_probs=75.7

Q ss_pred             CCcEEEeCCCcC----hHHHHHHhh------CCeEEEeechh-HHHHHHHHHHH----hhhc----cccCCCC-------
Q 029065           43 GKRVIELGAGCG----VAGFGMALL------GCNVITTDQIE-VLPLLKRNVEW----NTSR----ISQMNPG-------   96 (199)
Q Consensus        43 ~~~VLdlGcG~G----~~sl~la~~------g~~v~~~D~~~-~l~~a~~~~~~----~~~~----~~~~~~~-------   96 (199)
                      ..+|+-.||.||    .+++.+...      ..+|+|+|++. +++.|+.-+-.    .+.+    -+.+.+.       
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            369999999999    244444432      13599999965 99999775311    1110    0112111       


Q ss_pred             ----CCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEE
Q 029065           97 ----SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus        97 ----~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                          +.....|.+...|..+..  ....+.||+|+|.+++.+  .+....+++.+.+.|+|||.+++..
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~--~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQ--WAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCC--CccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence                122355777777775422  112468999999887744  5678999999999999999877755

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.31  E-value=4.1e-06  Score=77.31  Aligned_cols=108  Identities=13%  Similarity=0.036  Sum_probs=75.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--------------------------------------------CeEEEeech-hHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--------------------------------------------CNVITTDQI-EVL   76 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--------------------------------------------~~v~~~D~~-~~l   76 (199)
                      .+..++|-+||+|.+.+.+|..+                                            .+++|+|++ .++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            36799999999999998887531                                            258999995 599


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCC----cChHHHHHHHHHhcC--
Q 029065           77 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSG--  150 (199)
Q Consensus        77 ~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~--  150 (199)
                      +.|+.|+..++.           ...+.+.+.|+.+.... ...+.||+|++|+|+...    .....+...+-+.++  
T Consensus       270 ~~A~~N~~~~g~-----------~~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~  337 (702)
T PRK11783        270 QAARKNARRAGV-----------AELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ  337 (702)
T ss_pred             HHHHHHHHHcCC-----------CcceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence            999999999875           34678888887654321 113579999999887542    233344444444433  


Q ss_pred             -CCcEEEEEEEe
Q 029065          151 -PKTTILLGYEI  161 (199)
Q Consensus       151 -~~g~i~i~~~~  161 (199)
                       +|+.+++....
T Consensus       338 ~~g~~~~llt~~  349 (702)
T PRK11783        338 FGGWNAALFSSS  349 (702)
T ss_pred             CCCCeEEEEeCC
Confidence             77777666553

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.31  E-value=4.2e-07  Score=71.08  Aligned_cols=116  Identities=14%  Similarity=0.125  Sum_probs=68.1

Q ss_pred             CCCcEEEeCCCcCh----HHHHHHhh----C---CeEEEeechh-HHHHHHHHH-HHh---hhc----cccCCC------
Q 029065           42 KGKRVIELGAGCGV----AGFGMALL----G---CNVITTDQIE-VLPLLKRNV-EWN---TSR----ISQMNP------   95 (199)
Q Consensus        42 ~~~~VLdlGcG~G~----~sl~la~~----g---~~v~~~D~~~-~l~~a~~~~-~~~---~~~----~~~~~~------   95 (199)
                      +..+|+-.||++|-    +++.+...    .   .+++|||++. +++.|++-+ ..+   +.+    -+.+.+      
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            34699999999993    44444441    2   3699999965 999887632 111   110    011111      


Q ss_pred             --CCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065           96 --GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus        96 --~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                        .+..-..+.+...|..+   .....+.||+|+|.+++.+  ......+++.+.+.|+|||.+++...
T Consensus       111 ~v~~~lr~~V~F~~~NL~~---~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s  176 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLD---PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS  176 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred             eEChHHcCceEEEecccCC---CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence              12223468888888875   2234578999999988843  56788999999999999999988543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.29  E-value=6.4e-07  Score=70.87  Aligned_cols=102  Identities=12%  Similarity=0.073  Sum_probs=77.3

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ...++|||||-|.++.++...|- +++.+|.+. |++.++..-. ++.             ......   .+.+.++..+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i-------------~~~~~v---~DEE~Ldf~e  135 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSI-------------ETSYFV---GDEEFLDFKE  135 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cce-------------EEEEEe---cchhcccccc
Confidence            35799999999999988887765 499999866 8887766421 211             122222   2334445567


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +++|+|+++-.++|..+++..+..|+..|||+|.++-+.-.
T Consensus       136 ns~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasmlg  176 (325)
T KOG2940|consen  136 NSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLG  176 (325)
T ss_pred             cchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhc
Confidence            89999999999999999999999999999999987766543

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.27  E-value=2e-05  Score=64.52  Aligned_cols=137  Identities=11%  Similarity=0.050  Sum_probs=96.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C---CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g---~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      +..+||||-||.|..=+-+... .   ..|+..|+++ .++..+..++.+++.           ..+++.+.|..+...+
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-----------~i~~f~~~dAfd~~~l  203 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-----------DIARFEQGDAFDRDSL  203 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-----------cceEEEecCCCCHhHh
Confidence            3469999999999754433322 2   3599999965 889999999888752           3448888888777666


Q ss_pred             cccCCCccEEEEeccccCC---cChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh--CCeEEEecCCCcCc
Q 029065          117 KAVAPPFDYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS--NFNVKLVPKAKEST  190 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~---~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~  190 (199)
                      .......++++.++.+-..   ..+...+..+...+.|||.++.+.+.++++ .+.+...+..  +-+.|....++..+
T Consensus       204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-le~IAr~LtsHr~g~~WvMRrRsq~E  281 (311)
T PF12147_consen  204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-LEMIARVLTSHRDGKAWVMRRRSQAE  281 (311)
T ss_pred             hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-hHHHHHHHhcccCCCceEEEecCHHH
Confidence            6667789999999887432   336778889999999999999988888886 3333344432  22345555555443

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.26  E-value=9.2e-06  Score=67.75  Aligned_cols=129  Identities=16%  Similarity=0.132  Sum_probs=78.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHh---------hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           42 KGKRVIELGAGCGVAGFGMAL---------LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~---------~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      .+.+|||-.||+|.+-+.+..         ....++|.|+.. ++..|+.|+..++..          .....+...|..
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----------~~~~~i~~~d~l  115 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----------NSNINIIQGDSL  115 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----------CBGCEEEES-TT
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----------cccccccccccc
Confidence            466899999999987666665         245699999954 888998888776543          122345555543


Q ss_pred             CCccccccCCCccEEEEeccccCC--c-------------------ChHHHHHHHHHhcCCCcEEEEEEEecC---hhHH
Q 029065          112 NEDHIKAVAPPFDYIIGTDVVYAE--H-------------------LLEPLLQTIFALSGPKTTILLGYEIRS---TSVH  167 (199)
Q Consensus       112 ~~~~~~~~~~~fD~Ii~~~~~~~~--~-------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~---~~~~  167 (199)
                      ..... .....||+|++++|+-..  .                   .--.++..+.+.|+++|.+.+..+..-   ....
T Consensus       116 ~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~  194 (311)
T PF02384_consen  116 ENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSSE  194 (311)
T ss_dssp             TSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHH
T ss_pred             ccccc-ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccchH
Confidence            22211 114689999999998433  0                   012477888899999999877777531   1123


Q ss_pred             HHHHHHHHhCCeEE
Q 029065          168 EQMLQMWKSNFNVK  181 (199)
Q Consensus       168 ~~~~~~~~~~~~v~  181 (199)
                      ..+.+.+.+.+.++
T Consensus       195 ~~iR~~ll~~~~i~  208 (311)
T PF02384_consen  195 KKIRKYLLENGYIE  208 (311)
T ss_dssp             HHHHHHHHHHEEEE
T ss_pred             HHHHHHHHhhchhh
Confidence            45556665544443

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=7.7e-06  Score=63.86  Aligned_cols=112  Identities=19%  Similarity=0.207  Sum_probs=75.3

Q ss_pred             CCCCCCCcEEEeCCCcChHHHHHHhh-CCe---EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           38 PSKLKGKRVIELGAGCGVAGFGMALL-GCN---VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~~sl~la~~-g~~---v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      +.+.+|.+.||+|+|+|.++-.++++ |+.   ++|+|. +++++.+++|+......-..  +..=...++.++..|...
T Consensus        78 ~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~--~~~~~~~~l~ivvGDgr~  155 (237)
T KOG1661|consen   78 DHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSES--SSKLKRGELSIVVGDGRK  155 (237)
T ss_pred             HhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchh--hhhhccCceEEEeCCccc
Confidence            44668999999999999888777754 443   599996 88999999998765311000  000012345666555432


Q ss_pred             CccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          113 EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       113 ~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                         ......+||.|.+.      .....+.+.+...|+++|.+++--.
T Consensus       156 ---g~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  156 ---GYAEQAPYDAIHVG------AAASELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             ---cCCccCCcceEEEc------cCccccHHHHHHhhccCCeEEEeec
Confidence               22345789999876      4566777778888899998877543

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.23  E-value=5.1e-06  Score=68.72  Aligned_cols=115  Identities=17%  Similarity=0.143  Sum_probs=73.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc---cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~  116 (199)
                      ++..+++||||.|-.-+-.-+.|.. ++++|+++ .++.|+...........      +-.=...+...|.....   ..
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~------~~~f~a~f~~~Dc~~~~l~d~~  190 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFK------KFIFTAVFIAADCFKERLMDLL  190 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhh------cccceeEEEEeccchhHHHHhc
Confidence            5779999999998665655566765 99999977 88888876654321100      00012455555543322   12


Q ss_pred             cccCCCccEEEEeccccC----CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 KAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .+.+++||+|=+-=+++.    .+...-++..+...|+|||.++-+.|..
T Consensus       191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds  240 (389)
T KOG1975|consen  191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS  240 (389)
T ss_pred             cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence            223445999855444432    4457778899999999999977777654

>PRK00536 speE spermidine synthase; Provisional

Probab=98.22  E-value=3.9e-05  Score=62.54  Aligned_cols=119  Identities=8%  Similarity=-0.069  Sum_probs=80.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      +.++||=||.|-|.....+.+...+|+.+|+.+ +++.+++-+.....  +..      .+++++..  +.    .....
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~--~~~------DpRv~l~~--~~----~~~~~  137 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHE--VKN------NKNFTHAK--QL----LDLDI  137 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHH--hhc------CCCEEEee--hh----hhccC
Confidence            358999999999998999988866899999955 99999985543221  112      23566553  21    11123


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE--ecChhHHHHHHHHHHhCCe
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNFN  179 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~--~~~~~~~~~~~~~~~~~~~  179 (199)
                      +.||+||... .    ....+.+.+++.|+|+|++..-..  .-..+.+....+.++..|.
T Consensus       138 ~~fDVIIvDs-~----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~  193 (262)
T PRK00536        138 KKYDLIICLQ-E----PDIHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS  193 (262)
T ss_pred             CcCCEEEEcC-C----CChHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence            6899999753 3    346788999999999998766332  2223445555566666665

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=5.9e-06  Score=72.08  Aligned_cols=108  Identities=12%  Similarity=0.118  Sum_probs=78.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc--cccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--HIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~  118 (199)
                      .++.+||+-||||++|+.+|+...+|+|+++ +++++-|+.|+..|+.            ++.++...--++.-  ....
T Consensus       383 ~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi------------sNa~Fi~gqaE~~~~sl~~~  450 (534)
T KOG2187|consen  383 ADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI------------SNATFIVGQAEDLFPSLLTP  450 (534)
T ss_pred             CCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc------------cceeeeecchhhccchhccc
Confidence            5789999999999999999999889999998 5599999999999984            46677764221110  0011


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .-+.=+++...|+-. ......++..+..+-++.-.+|++-...
T Consensus       451 ~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~~  493 (534)
T KOG2187|consen  451 CCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNPH  493 (534)
T ss_pred             CCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCHH
Confidence            112334444444432 5678899999999988988899987654

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.17  E-value=5.6e-06  Score=67.66  Aligned_cols=117  Identities=15%  Similarity=0.153  Sum_probs=77.5

Q ss_pred             CCCcEEEeCCCcC--h--HHHHHHhhC-------CeEEEeechh-HHHHHHHHH-H-H---hhhcc----ccCCC-----
Q 029065           42 KGKRVIELGAGCG--V--AGFGMALLG-------CNVITTDQIE-VLPLLKRNV-E-W---NTSRI----SQMNP-----   95 (199)
Q Consensus        42 ~~~~VLdlGcG~G--~--~sl~la~~g-------~~v~~~D~~~-~l~~a~~~~-~-~---~~~~~----~~~~~-----   95 (199)
                      ...+|+-.||+||  .  +++.+...+       .+|+++|++. +|+.|+.=+ . .   .+++.    +.+..     
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            3569999999999  3  444444332       3599999965 999996522 1 1   11111    11211     


Q ss_pred             ---CCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccc-c-CCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065           96 ---GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV-Y-AEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus        96 ---~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~-~-~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                         .+.....|.+...|......   ..+.||+|+|-+++ | +......++..+...|+|||.+++....
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE  243 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSE  243 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence               12333456777776654421   46789999999887 3 3667889999999999999999986653

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.12  E-value=2.9e-06  Score=66.82  Aligned_cols=153  Identities=18%  Similarity=0.245  Sum_probs=69.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHh-hCCe-EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~-~g~~-v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++..++|||||.|..-+.+|. .+++ .+|+++ +...+.|+..........+   ..+.....+++.+.|+.+.+....
T Consensus        42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~---~~g~~~~~v~l~~gdfl~~~~~~~  118 (205)
T PF08123_consen   42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMK---HYGKRPGKVELIHGDFLDPDFVKD  118 (205)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHH---HCTB---EEEEECS-TTTHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHH---HhhcccccceeeccCccccHhHhh
Confidence            467999999999987776663 4665 999998 4455555443322110000   000113456666766654332211


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHH---HHHHHHHhCCeEEEecCCCcCcccCCC
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHE---QMLQMWKSNFNVKLVPKAKESTMWGNP  195 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~  195 (199)
                      .-..-|+|+++...|.......+ ..+...|++|..|+ +...-.+.-.+   +-...+..-++++........=.|.+.
T Consensus       119 ~~s~AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G~~II-s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~vSWt~~  196 (205)
T PF08123_consen  119 IWSDADVVFVNNTCFDPDLNLAL-AELLLELKPGARII-STKPFCPRRRSINSRNLDDIFAILKVEELEYVEGSVSWTSN  196 (205)
T ss_dssp             HGHC-SEEEE--TTT-HHHHHHH-HHHHTTS-TT-EEE-ESS-SS-TT----TTSTTSGGGCEEEEEEE--TT-BTTCSS
T ss_pred             hhcCCCEEEEeccccCHHHHHHH-HHHHhcCCCCCEEE-ECCCcCCCCcccchhhccChhhEEEEeecccCCCceeecCC
Confidence            12457999999988776655555 45555678877654 44332221111   011112233566665555554466555


Q ss_pred             CCCC
Q 029065          196 LGLY  199 (199)
Q Consensus       196 ~~~~  199 (199)
                      .|.|
T Consensus       197 ~~~y  200 (205)
T PF08123_consen  197 SGPY  200 (205)
T ss_dssp             B-EE
T ss_pred             CcCE
Confidence            5543

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=1e-05  Score=65.58  Aligned_cols=76  Identities=14%  Similarity=0.095  Sum_probs=58.2

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      +.+|||||+|.|.++..++..+++|+++++.. +++..++....              ..++++.+.|....+.....  
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~--------------~~n~~vi~~DaLk~d~~~l~--   94 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP--------------YDNLTVINGDALKFDFPSLA--   94 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc--------------ccceEEEeCchhcCcchhhc--
Confidence            67999999999999999999999999999955 77777766541              34788888887655422111  


Q ss_pred             CccEEEEeccccC
Q 029065          122 PFDYIIGTDVVYA  134 (199)
Q Consensus       122 ~fD~Ii~~~~~~~  134 (199)
                      .++.|++|=|++-
T Consensus        95 ~~~~vVaNlPY~I  107 (259)
T COG0030          95 QPYKVVANLPYNI  107 (259)
T ss_pred             CCCEEEEcCCCcc
Confidence            6889999877544

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.11  E-value=2.4e-05  Score=61.28  Aligned_cols=111  Identities=13%  Similarity=0.076  Sum_probs=67.0

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .++..|-|+|||-+.++..+. .+.+|...|+-..          |              +  .+..+|..+.   +..+
T Consensus        71 ~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~----------n--------------~--~Vtacdia~v---PL~~  120 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP----------N--------------P--RVTACDIANV---PLED  120 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH---S---EEEEESS-S----------S--------------T--TEEES-TTS----S--T
T ss_pred             CCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC----------C--------------C--CEEEecCccC---cCCC
Confidence            346799999999998774432 3456999995220          1              1  2334666433   3346


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh-CCeEEE
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKL  182 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~~v~~  182 (199)
                      +..|++|.+=.+ ...++..++....|.|++||.++|+.-....+....|.+.+.. ||+++.
T Consensus       121 ~svDv~VfcLSL-MGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~  182 (219)
T PF05148_consen  121 ESVDVAVFCLSL-MGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKS  182 (219)
T ss_dssp             T-EEEEEEES----SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEE
T ss_pred             CceeEEEEEhhh-hCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEe
Confidence            789999886443 3468899999999999999999999987666556788888754 677653

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.11  E-value=7.2e-05  Score=60.59  Aligned_cols=128  Identities=16%  Similarity=0.094  Sum_probs=84.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +.++||=||.|.|.....+.+..  .+|+++|++ .+++.|++-+......        -..+++++...|-...  ...
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--------~~d~r~~i~~~Dg~~~--l~~  145 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--------LDDPRVRIIIGDGRKF--LKE  145 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--------GGSTTEEEEESTHHHH--HHT
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--------cCCCceEEEEhhhHHH--HHh
Confidence            57899999999999888888764  569999995 5999998876554311        0135788877665322  122


Q ss_pred             cCC-CccEEEEeccc--cCC--cChHHHHHHHHHhcCCCcEEEEEEEec--ChhHHHHHHHHHHhCCe
Q 029065          119 VAP-PFDYIIGTDVV--YAE--HLLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN  179 (199)
Q Consensus       119 ~~~-~fD~Ii~~~~~--~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~~--~~~~~~~~~~~~~~~~~  179 (199)
                      ... +||+|+...+-  ...  -.-..+++.+++.|+|+|.+.+-....  .........+.+...|.
T Consensus       146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~  213 (246)
T PF01564_consen  146 TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP  213 (246)
T ss_dssp             SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred             ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence            234 89999985322  111  135789999999999999987765432  23334555556666554

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.09  E-value=9.5e-05  Score=65.16  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=76.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      -+|.+|||++||+|-=+.++|.. +  ..|++.|++. -++.+++|+++.+.            .++.+.+.|-....  
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------------~nv~v~~~D~~~~~--  177 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------------SNVALTHFDGRVFG--  177 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCchhhhh--
Confidence            36789999999999888777754 2  3699999954 88999999998873            35666665543221  


Q ss_pred             cccCCCccEEEEeccccCC------c----------------ChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          117 KAVAPPFDYIIGTDVVYAE------H----------------LLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~------~----------------~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      ......||.|+...+.-..      .                .-..++....++|+|||.++-++..-.
T Consensus       178 ~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~  246 (470)
T PRK11933        178 AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN  246 (470)
T ss_pred             hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence            1123579999976554211      1                126677888889999999877776533

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.08  E-value=2.4e-05  Score=59.08  Aligned_cols=99  Identities=16%  Similarity=0.164  Sum_probs=67.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCe---EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCN---VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~---v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~  116 (199)
                      .|+-|||+|.|||+++-.+.++|.+   ++++++ .+......+..                 +..++.++|-.+.+ .+
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----------------p~~~ii~gda~~l~~~l  110 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----------------PGVNIINGDAFDLRTTL  110 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----------------CCccccccchhhHHHHH
Confidence            5789999999999999999888753   999998 45555544432                 12233444433332 11


Q ss_pred             c-ccCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEE
Q 029065          117 K-AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       117 ~-~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      . ...+.||.|++.=++-.-  ..-..+++.+...|..||.++-
T Consensus       111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963         111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence            1 224579999999777653  3456779999999999887544

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.08  E-value=3.4e-06  Score=64.86  Aligned_cols=113  Identities=22%  Similarity=0.274  Sum_probs=61.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC---CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC---cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE---DH  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~  115 (199)
                      ++.+||||||++|-++..+...+   .+|+++|+..+-+                      ...+.....|..+.   ..
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~----------------------~~~~~~i~~d~~~~~~~~~   80 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP----------------------LQNVSFIQGDITNPENIKD   80 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-----------------------TTEEBTTGGGEEEEHSHH
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccccc----------------------ccceeeeecccchhhHHHh
Confidence            45899999999999999999887   5699999844300                      01112222222111   11


Q ss_pred             cc----ccCCCccEEEEeccccC-----------CcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCC
Q 029065          116 IK----AVAPPFDYIIGTDVVYA-----------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF  178 (199)
Q Consensus       116 ~~----~~~~~fD~Ii~~~~~~~-----------~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~  178 (199)
                      ..    ...+.||+|++......           .......+......|++||.+++..-.... . +.+...+...|
T Consensus        81 i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~-~-~~~~~~l~~~F  156 (181)
T PF01728_consen   81 IRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPE-I-EELIYLLKRCF  156 (181)
T ss_dssp             GGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTT-S-HHHHHHHHHHH
T ss_pred             hhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCcc-H-HHHHHHHHhCC
Confidence            11    11268999998763322           112344444556678999987665543222 2 35555555444

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.06  E-value=5e-05  Score=64.63  Aligned_cols=104  Identities=13%  Similarity=0.057  Sum_probs=77.8

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCC-----------------------------------------eEEEeech-hHHHHHH
Q 029065           43 GKRVIELGAGCGVAGFGMALLGC-----------------------------------------NVITTDQI-EVLPLLK   80 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~-----------------------------------------~v~~~D~~-~~l~~a~   80 (199)
                      +..++|=-||+|.+.+.+|..+.                                         .++|+|++ .+++.|+
T Consensus       192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak  271 (381)
T COG0116         192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAK  271 (381)
T ss_pred             CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHH
Confidence            46899999999999999998874                                         27799995 5999999


Q ss_pred             HHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccC----Cc----ChHHHHHHHHHhcCCC
Q 029065           81 RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EH----LLEPLLQTIFALSGPK  152 (199)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~----~~----~~~~~l~~l~~~l~~~  152 (199)
                      .|+...+.           .+.|++.+.|.......   -..+|+||+|+|+-.    ..    .+..+.+.+++.++--
T Consensus       272 ~NA~~AGv-----------~d~I~f~~~d~~~l~~~---~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~w  337 (381)
T COG0116         272 ANARAAGV-----------GDLIEFKQADATDLKEP---LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGW  337 (381)
T ss_pred             HHHHhcCC-----------CceEEEEEcchhhCCCC---CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCC
Confidence            99999876           56789998887654321   268999999988632    11    3455666666777665


Q ss_pred             cEEEEEEE
Q 029065          153 TTILLGYE  160 (199)
Q Consensus       153 g~i~i~~~  160 (199)
                      +..+|+..
T Consensus       338 s~~v~tt~  345 (381)
T COG0116         338 SRYVFTTS  345 (381)
T ss_pred             ceEEEEcc
Confidence            66555543

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.06  E-value=3.2e-05  Score=62.31  Aligned_cols=107  Identities=14%  Similarity=0.100  Sum_probs=75.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      ....|.|+|||-+-++.   ..-..|...|+-.+                          +-++..+|..+.   +..++
T Consensus       180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~--------------------------~~~V~~cDm~~v---Pl~d~  227 (325)
T KOG3045|consen  180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVAV--------------------------NERVIACDMRNV---PLEDE  227 (325)
T ss_pred             CceEEEecccchhhhhh---ccccceeeeeeecC--------------------------CCceeeccccCC---cCccC
Confidence            46799999999986554   44566999995221                          124445676543   34478


Q ss_pred             CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEE
Q 029065          122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK  181 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~  181 (199)
                      ..|++|.+=.+ ...++.+++....++|++||.+||+.-.........|.+.+. -||.+.
T Consensus       228 svDvaV~CLSL-Mgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~  287 (325)
T KOG3045|consen  228 SVDVAVFCLSL-MGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK  287 (325)
T ss_pred             cccEEEeeHhh-hcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee
Confidence            99998876443 356889999999999999999999987655544556777764 366553

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.04  E-value=4.3e-05  Score=68.07  Aligned_cols=107  Identities=12%  Similarity=0.036  Sum_probs=73.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC--eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+..+||||||.|-..+.+|....  .++|+|+ ...+..+.+.+...+            ..++.+...|....... .
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~------------l~N~~~~~~~~~~~~~~-~  413 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQN------------ITNFLLFPNNLDLILND-L  413 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcC------------CCeEEEEcCCHHHHHHh-c
Confidence            357999999999999999998755  4999998 445555555555444            34676665554322111 2


Q ss_pred             cCCCccEEEEe--ccccCCc------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          119 VAPPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       119 ~~~~fD~Ii~~--~~~~~~~------~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..+++|-|..+  ||..-..      .-..+++.+.++|+|||.+++.+-.
T Consensus       414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~  464 (506)
T PRK01544        414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI  464 (506)
T ss_pred             CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence            35678988766  3332211      3678999999999999999997754

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.02  E-value=2e-05  Score=62.34  Aligned_cols=105  Identities=16%  Similarity=0.156  Sum_probs=75.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-c
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-H  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~  115 (199)
                      ...+++||||.-||.-++..|..   +.+|+++|+++ ..+.+.+-....+..           .+|++.+..-.+.. .
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-----------~KI~~i~g~a~esLd~  140 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-----------HKITFIEGPALESLDE  140 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-----------ceeeeeecchhhhHHH
Confidence            35789999999999766666654   78899999955 888887777777653           36666664432221 1


Q ss_pred             c--cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 I--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 ~--~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      +  ....+.||.++..   .+..+.......+.+++++||++++-.
T Consensus       141 l~~~~~~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  141 LLADGESGTFDFAFVD---ADKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             HHhcCCCCceeEEEEc---cchHHHHHHHHHHHhhcccccEEEEec
Confidence            1  1224689999886   345667788999999999999877654

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.99  E-value=0.00036  Score=55.87  Aligned_cols=133  Identities=18%  Similarity=0.221  Sum_probs=80.2

Q ss_pred             cCCCCCCCCcEEEeCCCcChHHHHHHh--hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           36 FCPSKLKGKRVIELGAGCGVAGFGMAL--LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        36 ~~~~~~~~~~VLdlGcG~G~~sl~la~--~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      ....++.|++||=+|=+- +.|+.+|.  ...+|+.+|+.+ +++..++.+...++             .|+....|+.+
T Consensus        38 ~~~gdL~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-------------~i~~~~~DlR~  103 (243)
T PF01861_consen   38 AERGDLEGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-------------PIEAVHYDLRD  103 (243)
T ss_dssp             HHTT-STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---------------EEEE---TTS
T ss_pred             HhcCcccCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-------------ceEEEEecccc
Confidence            366778999999999543 45666664  356799999966 99999999888875             48888888875


Q ss_pred             CccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCc-EEEEEEEecC--hhHHHHHHHHH-HhCCeEEEec
Q 029065          113 EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT-TILLGYEIRS--TSVHEQMLQMW-KSNFNVKLVP  184 (199)
Q Consensus       113 ~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g-~i~i~~~~~~--~~~~~~~~~~~-~~~~~v~~~~  184 (199)
                      ... ....+.||+++..+| |-.+...-|+......|+..| ..|++...+.  ......+.+.+ ..+|-++.+-
T Consensus       104 ~LP-~~~~~~fD~f~TDPP-yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl~i~dii  177 (243)
T PF01861_consen  104 PLP-EELRGKFDVFFTDPP-YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGLVITDII  177 (243)
T ss_dssp             ----TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--EEEEEE
T ss_pred             cCC-HHHhcCCCEEEeCCC-CCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCcCHHHHH
Confidence            531 223579999999654 777888899999999998655 7899998876  33233343333 3467665543

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.99  E-value=5.9e-06  Score=72.08  Aligned_cols=141  Identities=10%  Similarity=0.051  Sum_probs=81.1

Q ss_pred             cccCCCCCCceEEEeecCcceeeccccccccCc-cCCCCCCC---CcEEEeCCCcChHHHHHHhhCCeEEEe---echh-
Q 029065            3 ADRLNSPSTSVINLEVLGHQLQFSQEKNCRKGR-FCPSKLKG---KRVIELGAGCGVAGFGMALLGCNVITT---DQIE-   74 (199)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~VLdlGcG~G~~sl~la~~g~~v~~~---D~~~-   74 (199)
                      .++|..-......|+-.|..|--+-..=.+.+. .-|....+   ..+||+|||+|..+..+..++-.+..+   |..+ 
T Consensus        74 ~qnWv~~~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~  153 (506)
T PF03141_consen   74 DQNWVRVEGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEA  153 (506)
T ss_pred             cccceeecCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCch
Confidence            455666666666666555443322110000000 11221222   389999999999999998887764444   3222 


Q ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccC-CcChHHHHHHHHHhcCCCc
Q 029065           75 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKT  153 (199)
Q Consensus        75 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~-~~~~~~~l~~l~~~l~~~g  153 (199)
                      ..+.|.    ..|++            .+    +.......++++.+.||+|.++.+.-. ...-.-++-.+.|+|+|||
T Consensus       154 qvqfal----eRGvp------------a~----~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGG  213 (506)
T PF03141_consen  154 QVQFAL----ERGVP------------AM----IGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGG  213 (506)
T ss_pred             hhhhhh----hcCcc------------hh----hhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCc
Confidence            222221    12211            00    111112345677889999999988854 3333457888999999999


Q ss_pred             EEEEEEEecC
Q 029065          154 TILLGYEIRS  163 (199)
Q Consensus       154 ~i~i~~~~~~  163 (199)
                      .++++.+..+
T Consensus       214 yfv~S~ppv~  223 (506)
T PF03141_consen  214 YFVLSGPPVY  223 (506)
T ss_pred             eEEecCCccc
Confidence            9999988644

; GO: 0008168 methyltransferase activity

>PRK10742 putative methyltransferase; Provisional

Probab=97.97  E-value=7.8e-05  Score=60.09  Aligned_cols=84  Identities=18%  Similarity=0.201  Sum_probs=56.7

Q ss_pred             cEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCC-CCCcEEEEEeeeCCCccccccCCC
Q 029065           45 RVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSD-LLGSIQAVELDWGNEDHIKAVAPP  122 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~~~  122 (199)
                      +|||+-+|+|..++.++.+|++|+++|.+. +....+.++......    ..... ...++++.+.|.....  ......
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~----~~~~~~~~~ri~l~~~da~~~L--~~~~~~  164 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYAD----AEIGGWLQERLQLIHASSLTAL--TDITPR  164 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhc----cccchhhhceEEEEeCcHHHHH--hhCCCC
Confidence            899999999999999999999999999855 777777777663110    00001 1145676665554322  112347


Q ss_pred             ccEEEEeccccC
Q 029065          123 FDYIIGTDVVYA  134 (199)
Q Consensus       123 fD~Ii~~~~~~~  134 (199)
                      ||+|...+++-+
T Consensus       165 fDVVYlDPMfp~  176 (250)
T PRK10742        165 PQVVYLDPMFPH  176 (250)
T ss_pred             CcEEEECCCCCC
Confidence            999998665544

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.95  E-value=4.2e-05  Score=62.04  Aligned_cols=75  Identities=21%  Similarity=0.290  Sum_probs=57.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      +...|||+|.|||.++..+...|++|+++++ +.++...++..+..           +....+++..+|+...+     .
T Consensus        58 ~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gt-----------p~~~kLqV~~gD~lK~d-----~  121 (315)
T KOG0820|consen   58 PTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGT-----------PKSGKLQVLHGDFLKTD-----L  121 (315)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCC-----------CccceeeEEecccccCC-----C
Confidence            3569999999999999999999999999998 55777776665443           22457888888875432     4


Q ss_pred             CCccEEEEeccc
Q 029065          121 PPFDYIIGTDVV  132 (199)
Q Consensus       121 ~~fD~Ii~~~~~  132 (199)
                      ..||++|++-++
T Consensus       122 P~fd~cVsNlPy  133 (315)
T KOG0820|consen  122 PRFDGCVSNLPY  133 (315)
T ss_pred             cccceeeccCCc
Confidence            689999987554

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.90  E-value=2.3e-05  Score=60.38  Aligned_cols=96  Identities=21%  Similarity=0.199  Sum_probs=69.7

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      ...+.|||+|+|.+++.+|....+|++++. +...+.|.+|+..++            ..+++++..|-...+     -.
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g------------~~n~evv~gDA~~y~-----fe   95 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG------------DVNWEVVVGDARDYD-----FE   95 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC------------CcceEEEeccccccc-----cc
Confidence            458999999999999999998777999998 457788888886666            457787776654332     14


Q ss_pred             CccEEEEe--ccccCCcChHHHHHHHHHhcCCCcEE
Q 029065          122 PFDYIIGT--DVVYAEHLLEPLLQTIFALSGPKTTI  155 (199)
Q Consensus       122 ~fD~Ii~~--~~~~~~~~~~~~l~~l~~~l~~~g~i  155 (199)
                      .-|+|+|-  |+..-.+-..+++..+...|+.++.+
T Consensus        96 ~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~ti  131 (252)
T COG4076          96 NADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTI  131 (252)
T ss_pred             ccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCcc
Confidence            56887763  33333455667777777788876653

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.90  E-value=6.5e-05  Score=55.18  Aligned_cols=57  Identities=25%  Similarity=0.363  Sum_probs=45.8

Q ss_pred             cEEEeCCCcChHHHHHHhhCC--eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           45 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~g~--~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      +|||+|||.|..++.++..+.  +|+++|. +.+.+.+++++..|+.            .++.+.+..+.+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------------~~v~~~~~al~~~   60 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------------PNVVLLNAAVGDR   60 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------------CcEEEEEeeeeCC
Confidence            489999999999999998876  4999998 5599999999988863            3466666666543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=0.00021  Score=56.01  Aligned_cols=115  Identities=18%  Similarity=0.224  Sum_probs=75.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CC--eEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~--~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-  117 (199)
                      .+.+|+||||-+|-++..+++. +.  +|+++|+.++                      +....+.+.+.|+.+.+... 
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~----------------------~~~~~V~~iq~d~~~~~~~~~  102 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM----------------------KPIPGVIFLQGDITDEDTLEK  102 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc----------------------ccCCCceEEeeeccCccHHHH
Confidence            4689999999999999999976 33  3999997553                      01235788888987775332 


Q ss_pred             ----ccCCCccEEEEeccc----cCCc-------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeE
Q 029065          118 ----AVAPPFDYIIGTDVV----YAEH-------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       118 ----~~~~~fD~Ii~~~~~----~~~~-------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v  180 (199)
                          ....++|+|++...-    .+..       ....++......|+|+|.+++-.-....  .+.++..+++.|..
T Consensus       103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~--~~~~l~~~~~~F~~  178 (205)
T COG0293         103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED--FEDLLKALRRLFRK  178 (205)
T ss_pred             HHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC--HHHHHHHHHHhhce
Confidence                112357999865322    1111       2344555566778999987665543322  46777777776643

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.87  E-value=0.00053  Score=48.92  Aligned_cols=103  Identities=22%  Similarity=0.268  Sum_probs=64.8

Q ss_pred             EEEeCCCcChHHHHHHhhC---CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC-
Q 029065           46 VIELGAGCGVAGFGMALLG---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA-  120 (199)
Q Consensus        46 VLdlGcG~G~~sl~la~~g---~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-  120 (199)
                      ++|+|||+|... .++...   ..++++|.+. ++..++........            ..+.+...+.... ...... 
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-~~~~~~~  117 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL------------GLVDFVVADALGG-VLPFEDS  117 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC------------CceEEEEeccccC-CCCCCCC
Confidence            999999999866 444433   4789999854 66664333222110            0145555555431 112222 


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      ..||++......++.. ...++..+.+.++|+|.+++......
T Consensus       118 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~  159 (257)
T COG0500         118 ASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVLSDLLRD  159 (257)
T ss_pred             CceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence            4799994444433344 88999999999999999888877543

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.86  E-value=0.00013  Score=60.25  Aligned_cols=105  Identities=13%  Similarity=0.036  Sum_probs=73.7

Q ss_pred             CcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           44 KRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++||-||.|.|.....+.+..  .+++.+|+. .+++.+++-+......        ...+++++...|-...  .....
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~--------~~dpRv~i~i~Dg~~~--v~~~~  147 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG--------ADDPRVEIIIDDGVEF--LRDCE  147 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc--------cCCCceEEEeccHHHH--HHhCC
Confidence            699999999999999999886  569999995 5999999877543210        1135677666554322  12223


Q ss_pred             CCccEEEEecccc-CC---cChHHHHHHHHHhcCCCcEEEEE
Q 029065          121 PPFDYIIGTDVVY-AE---HLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       121 ~~fD~Ii~~~~~~-~~---~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      ..||+||..-.=. .+   -.-..+.+.+++.|+++|++..-
T Consensus       148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            4899999863211 11   12488999999999999986665

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.83  E-value=0.0002  Score=58.53  Aligned_cols=93  Identities=18%  Similarity=0.235  Sum_probs=65.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++..|||+|+|+|.++..++..+.+|+++|.. ..++..++....              ..++++...|+...+......
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~--------------~~~~~vi~~D~l~~~~~~~~~   95 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS--------------NPNVEVINGDFLKWDLYDLLK   95 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT--------------CSSEEEEES-TTTSCGGGHCS
T ss_pred             CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh--------------cccceeeecchhccccHHhhc
Confidence            68899999999999999999999889999995 477777765542              347899998887554433223


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCC
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGP  151 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~  151 (199)
                      .....|+++-++   ..-..++..+...-+.
T Consensus        96 ~~~~~vv~NlPy---~is~~il~~ll~~~~~  123 (262)
T PF00398_consen   96 NQPLLVVGNLPY---NISSPILRKLLELYRF  123 (262)
T ss_dssp             SSEEEEEEEETG---TGHHHHHHHHHHHGGG
T ss_pred             CCceEEEEEecc---cchHHHHHHHhhcccc
Confidence            466778888664   2233555555554343

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.82  E-value=5.2e-05  Score=65.21  Aligned_cols=96  Identities=16%  Similarity=0.185  Sum_probs=66.3

Q ss_pred             cEEEeCCCcChHHHHHHhhCCe-EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-cccCC
Q 029065           45 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVAP  121 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~g~~-v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~~  121 (199)
                      .|||||+|||++|+.+++.|+. |++++. ..|.+.|+.-...|+.           .++|.+.+   ...+.. .....
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----------SdkI~vIn---krStev~vg~~~  134 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----------SDKINVIN---KRSTEVKVGGSS  134 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----------ccceeeec---cccceeeecCcc
Confidence            7999999999999999999987 999997 6799999998888864           45666654   222211 11123


Q ss_pred             CccEEEEeccc---cCCcChHHHHHHHHHhcCCCcE
Q 029065          122 PFDYIIGTDVV---YAEHLLEPLLQTIFALSGPKTT  154 (199)
Q Consensus       122 ~fD~Ii~~~~~---~~~~~~~~~l~~l~~~l~~~g~  154 (199)
                      +-|+++..+..   -....++.+-.+..+++.+++.
T Consensus       135 RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~  170 (636)
T KOG1501|consen  135 RADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCK  170 (636)
T ss_pred             hhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCe
Confidence            46666554321   1233566777777788887753

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.78  E-value=1.9e-05  Score=64.06  Aligned_cols=150  Identities=17%  Similarity=0.239  Sum_probs=80.3

Q ss_pred             ccCCCCCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhh----cccc--CCCCCCC-------
Q 029065           35 RFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTS----RISQ--MNPGSDL-------   99 (199)
Q Consensus        35 ~~~~~~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~----~~~~--~~~~~~~-------   99 (199)
                      .|.+..++|.++||||||+-+..+..|..-+ +++++|+.+ -.+..++=+...+.    +.-.  ++-.+..       
T Consensus        49 ~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e  128 (256)
T PF01234_consen   49 TFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKE  128 (256)
T ss_dssp             HHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHH
T ss_pred             HhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHH
Confidence            3677888999999999999766555554444 599999843 33333322211110    0000  0000000       


Q ss_pred             ---CCcE-EEEEeeeCCCccccc---cCCCccEEEEeccccC----CcChHHHHHHHHHhcCCCcEEEEEEEecCh----
Q 029065          100 ---LGSI-QAVELDWGNEDHIKA---VAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIRST----  164 (199)
Q Consensus       100 ---~~~i-~~~~~d~~~~~~~~~---~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~----  164 (199)
                         -..| .+..+|.........   ..++||+|++.-++-.    .+.....++.+.++|||||.++++.-....    
T Consensus       129 ~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~v  208 (256)
T PF01234_consen  129 EKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMV  208 (256)
T ss_dssp             HHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEE
T ss_pred             HHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEE
Confidence               0123 366777766554433   1235999999877643    335677788888889999998877543211    


Q ss_pred             --------hHHHHH-HHHH-HhCCeEEEec
Q 029065          165 --------SVHEQM-LQMW-KSNFNVKLVP  184 (199)
Q Consensus       165 --------~~~~~~-~~~~-~~~~~v~~~~  184 (199)
                              ..-+.+ .+.+ ..||.+....
T Consensus       209 G~~~F~~l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  209 GGHKFPCLPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             TTEEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred             CCEecccccCCHHHHHHHHHHcCCEEEecc
Confidence                    112333 3334 4588887776

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=0.00086  Score=57.21  Aligned_cols=112  Identities=21%  Similarity=0.206  Sum_probs=78.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh----CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~----g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .|.+|||+-+++|-=+.++|..    |..|+++|.+. -++.++.|+.+.+.            .++.....|-......
T Consensus       156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------------~nv~~~~~d~~~~~~~  223 (355)
T COG0144         156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------------RNVIVVNKDARRLAEL  223 (355)
T ss_pred             CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CceEEEeccccccccc
Confidence            6789999999999766666543    45589999955 88999999999874            3455555554333222


Q ss_pred             cccCCCccEEEEeccccCC----------------------cChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065          117 KAVAPPFDYIIGTDVVYAE----------------------HLLEPLLQTIFALSGPKTTILLGYEIRSTS  165 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~----------------------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~  165 (199)
                      .....+||.|+...+.-..                      ....+++....++|+|||.++-++.....+
T Consensus       224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e  294 (355)
T COG0144         224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE  294 (355)
T ss_pred             ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence            2223369999987665221                      125677888888999999998888765443

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.76  E-value=0.00034  Score=57.53  Aligned_cols=124  Identities=16%  Similarity=0.194  Sum_probs=68.2

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+..++|||+|||+|.....+... +  .+++++|.+. +++.++.-+....              ....  ..|.....
T Consensus        31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~--------------~~~~--~~~~~~~~   94 (274)
T PF09243_consen   31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP--------------NNRN--AEWRRVLY   94 (274)
T ss_pred             CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc--------------cccc--chhhhhhh
Confidence            477789999999999744333322 2  3499999865 8887777443221              0000  01111000


Q ss_pred             c-cccCCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEecChh--HHHHHHHHHH-hCCeEE
Q 029065          116 I-KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRSTS--VHEQMLQMWK-SNFNVK  181 (199)
Q Consensus       116 ~-~~~~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~~~~--~~~~~~~~~~-~~~~v~  181 (199)
                      . .......|+|+++.++....  ....+++.+...+++  .++|..+.-...  ......+.+. .++.+.
T Consensus        95 ~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~v~  164 (274)
T PF09243_consen   95 RDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAHVV  164 (274)
T ss_pred             cccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCceE
Confidence            0 01112349999999887633  455556666555655  667777654333  2444444443 355554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.75  E-value=0.00088  Score=52.79  Aligned_cols=116  Identities=16%  Similarity=0.077  Sum_probs=71.3

Q ss_pred             EEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065           46 VIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  122 (199)
Q Consensus        46 VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  122 (199)
                      |.|+||--|.+++.|...|.  +++++|+++ -++.|+.++...++           .+++++...|-...  + ...+.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----------~~~i~~rlgdGL~~--l-~~~e~   66 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----------EDRIEVRLGDGLEV--L-KPGED   66 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------------TTTEEEEE-SGGGG-----GGG-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------cccEEEEECCcccc--c-CCCCC
Confidence            68999999999999999886  499999955 99999999998875           45788877664321  1 11224


Q ss_pred             ccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeE
Q 029065          123 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       123 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v  180 (199)
                      .|.|+.+++-  ...+.+++......++....+++ .|.........|+..  .+|.+
T Consensus        67 ~d~ivIAGMG--G~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~~LR~~L~~--~gf~I  119 (205)
T PF04816_consen   67 VDTIVIAGMG--GELIIEILEAGPEKLSSAKRLIL-QPNTHAYELRRWLYE--NGFEI  119 (205)
T ss_dssp             --EEEEEEE---HHHHHHHHHHTGGGGTT--EEEE-EESS-HHHHHHHHHH--TTEEE
T ss_pred             CCEEEEecCC--HHHHHHHHHhhHHHhccCCeEEE-eCCCChHHHHHHHHH--CCCEE
Confidence            7898887652  23466666666666655444444 555555444444443  44544

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.75  E-value=0.0004  Score=56.82  Aligned_cols=113  Identities=19%  Similarity=0.147  Sum_probs=73.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhh------hcc-----ccCC-------------C-
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNT------SRI-----SQMN-------------P-   95 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~------~~~-----~~~~-------------~-   95 (199)
                      -.+.+||==|||.|.++..+|.+|..|.+.|.+-..-.+.. .-+|.      ..+     ..++             | 
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~-fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASN-FILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHH-HHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            34579999999999999999999999999999772222222 22221      111     0000             1 


Q ss_pred             ---C--CCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcE
Q 029065           96 ---G--SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT  154 (199)
Q Consensus        96 ---~--~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~  154 (199)
                         .  .....++....+|+...-......+.||+|+.+=.+=-..++-+.++++.++|||||.
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~  197 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGY  197 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCE
Confidence               1  1224456666666654432222247899999872222256789999999999999995

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.74  E-value=0.00065  Score=55.78  Aligned_cols=105  Identities=17%  Similarity=0.117  Sum_probs=63.7

Q ss_pred             CCcEEEeCCCc-ChHHHHHHhh---CCeEEEeec-hhHHHHHHHHHH-HhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           43 GKRVIELGAGC-GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        43 ~~~VLdlGcG~-G~~sl~la~~---g~~v~~~D~-~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++|+=||||+ -+.++.+++.   ++.|+++|+ +++.+.+++-+. ..++           ..++.+...|..+..  
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----------~~~m~f~~~d~~~~~--  187 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----------SKRMSFITADVLDVT--  187 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------------SSEEEEES-GGGG---
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----------cCCeEEEecchhccc--
Confidence            46999999997 6778888854   466999999 559999988666 3343           457888887765332  


Q ss_pred             cccCCCccEEEEecccc-CCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVVY-AEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~-~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                       .....||+|+.+.... ..+...+++..+.+.++||+.+.+-...
T Consensus       188 -~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~  232 (276)
T PF03059_consen  188 -YDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAH  232 (276)
T ss_dssp             -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred             -cccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecch
Confidence             2246899998887775 3668999999999999999988887554

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.65  E-value=0.00044  Score=58.08  Aligned_cols=107  Identities=13%  Similarity=0.117  Sum_probs=68.5

Q ss_pred             CCCcEEEeCCCcChHHHH-HH---hh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEE--EEeeeCC
Q 029065           42 KGKRVIELGAGCGVAGFG-MA---LL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQA--VELDWGN  112 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~-la---~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~d~~~  112 (199)
                      ++..++|+|||.|.=... |.   ..  ...++.+|++. +|+.+..++....            .+.+.+  ...|+.+
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~------------~p~l~v~~l~gdy~~  143 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN------------FSHVRCAGLLGTYDD  143 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc------------CCCeEEEEEEecHHH
Confidence            456899999999963322 22   12  35699999975 9998888876222            234444  5666644


Q ss_pred             Ccc-ccc--cCCCccEEEEec-cccC--CcChHHHHHHHHH-hcCCCcEEEEEEE
Q 029065          113 EDH-IKA--VAPPFDYIIGTD-VVYA--EHLLEPLLQTIFA-LSGPKTTILLGYE  160 (199)
Q Consensus       113 ~~~-~~~--~~~~fD~Ii~~~-~~~~--~~~~~~~l~~l~~-~l~~~g~i~i~~~  160 (199)
                      ... ++.  ......+++.-+ ++.+  ......+++.+.+ .|+|++.++|..-
T Consensus       144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D  198 (319)
T TIGR03439       144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD  198 (319)
T ss_pred             HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence            321 111  123456665544 5543  5567788999999 9999999888753

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PHA01634 hypothetical protein

Probab=97.62  E-value=0.00012  Score=52.96  Aligned_cols=53  Identities=15%  Similarity=0.273  Sum_probs=45.9

Q ss_pred             ccCCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhh
Q 029065           35 RFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNT   87 (199)
Q Consensus        35 ~~~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~   87 (199)
                      .++...+++++|+|+|++.|.-++.++..||+ |++.+..+ ..+..++|+..+.
T Consensus        21 ~Y~~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn   75 (156)
T PHA01634         21 AYGMLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN   75 (156)
T ss_pred             HhhheeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence            34667789999999999999999999999998 99999854 7788888887774

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.55  E-value=0.001  Score=56.12  Aligned_cols=96  Identities=14%  Similarity=0.106  Sum_probs=62.5

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ..+|+++|||||++|-++..+.+.|++|+++|...+-+    .+..+              .++.....|-...  .+ .
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~----~L~~~--------------~~V~h~~~d~fr~--~p-~  267 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQ----SLMDT--------------GQVEHLRADGFKF--RP-P  267 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCH----hhhCC--------------CCEEEEeccCccc--CC-C
Confidence            45789999999999999999999999999999644321    12121              2455444332221  11 1


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCC--cEEEEEEE
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK--TTILLGYE  160 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~--g~i~i~~~  160 (199)
                      .+++|.+++.-.    ..+..+.+.+.+++..|  ..+++..+
T Consensus       268 ~~~vDwvVcDmv----e~P~rva~lm~~Wl~~g~cr~aIfnLK  306 (357)
T PRK11760        268 RKNVDWLVCDMV----EKPARVAELMAQWLVNGWCREAIFNLK  306 (357)
T ss_pred             CCCCCEEEEecc----cCHHHHHHHHHHHHhcCcccEEEEEEE
Confidence            568999998644    45567777777777655  23444443

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.00089  Score=53.47  Aligned_cols=102  Identities=17%  Similarity=0.074  Sum_probs=65.1

Q ss_pred             CCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           37 CPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      -...++|+.|||+|+-||-.+..+...||+ |+++|... -+..-   +..+             ...+.....+....+
T Consensus        74 F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~d-------------~rV~~~E~tN~r~l~  137 (245)
T COG1189          74 FELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRND-------------PRVIVLERTNVRYLT  137 (245)
T ss_pred             cCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---HhcC-------------CcEEEEecCChhhCC
Confidence            346688999999999999999999999987 99999732 21111   1111             112233333333222


Q ss_pred             cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          115 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      ... ..+..|+|++.-++   -....++..+..++++++.++.-
T Consensus       138 ~~~-~~~~~d~~v~DvSF---ISL~~iLp~l~~l~~~~~~~v~L  177 (245)
T COG1189         138 PED-FTEKPDLIVIDVSF---ISLKLILPALLLLLKDGGDLVLL  177 (245)
T ss_pred             HHH-cccCCCeEEEEeeh---hhHHHHHHHHHHhcCCCceEEEE
Confidence            211 13478888887554   35677888888889888765443

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.43  E-value=0.00031  Score=58.29  Aligned_cols=43  Identities=12%  Similarity=0.057  Sum_probs=36.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC---CeEEEeec-hhHHHHHHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVE   84 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~-~~~l~~a~~~~~   84 (199)
                      ++..++|.+||.|-.+..++...   .+|+++|. +++++.+++.+.
T Consensus        19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~   65 (296)
T PRK00050         19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK   65 (296)
T ss_pred             CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence            45699999999999999999774   57999999 559999987763

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.42  E-value=0.0018  Score=51.05  Aligned_cols=105  Identities=17%  Similarity=0.100  Sum_probs=76.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      -+|.+||++|-|-|++.-++..... +-+.++- +.+++.++.+.-..             -.++.+...-|.+.... .
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------------k~nViil~g~WeDvl~~-L  165 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------------KENVIILEGRWEDVLNT-L  165 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------------ccceEEEecchHhhhcc-c
Confidence            4688999999999998887776644 4777787 66888887764333             23677888888765322 3


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      +++.||-|.-...--+.+++..+.+.+.++|+|+|++-+..
T Consensus       166 ~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  166 PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence            35679988764321345678888899999999999874443

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.34  E-value=0.00012  Score=57.76  Aligned_cols=98  Identities=17%  Similarity=0.116  Sum_probs=70.6

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~  120 (199)
                      ...|+|..||.|-.++..|..|+.|+++|++. -+..|+.|++.-|.           .++|.+.++||.+.- .++...
T Consensus        95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI-----------~~rItFI~GD~ld~~~~lq~~K  163 (263)
T KOG2730|consen   95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV-----------PDRITFICGDFLDLASKLKADK  163 (263)
T ss_pred             cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC-----------CceeEEEechHHHHHHHHhhhh
Confidence            45899999999988999999999999999954 78888999988875           459999999996442 222333


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCC
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGP  151 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~  151 (199)
                      .-+|.++.+++.-.++....-+.-+..++.|
T Consensus       164 ~~~~~vf~sppwggp~y~~~~~~DL~~~~~p  194 (263)
T KOG2730|consen  164 IKYDCVFLSPPWGGPSYLRADVYDLETHLKP  194 (263)
T ss_pred             heeeeeecCCCCCCcchhhhhhhhhhhhcch
Confidence            4577888888775555433333333333333

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.34  E-value=5.2e-05  Score=59.31  Aligned_cols=93  Identities=20%  Similarity=0.244  Sum_probs=68.3

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      ++++||||+|-|-++..++....+|.+++.+. |....+..    +-            .  ..-..+|.+.      +-
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk----~y------------n--Vl~~~ew~~t------~~  168 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK----NY------------N--VLTEIEWLQT------DV  168 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc----CC------------c--eeeehhhhhc------Cc
Confidence            57999999999999999998877899999866 65554332    11            1  1122455322      34


Q ss_pred             CccEEEEeccccCCcChHHHHHHHHHhcCC-CcEEEEEE
Q 029065          122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGP-KTTILLGY  159 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~-~g~i~i~~  159 (199)
                      +||+|.+-..+-..-++-.+++-++.+|.| +|.++++-
T Consensus       169 k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaL  207 (288)
T KOG3987|consen  169 KLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL  207 (288)
T ss_pred             eeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence            799999888776667788999999999998 78776653

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.27  E-value=0.0013  Score=56.54  Aligned_cols=102  Identities=24%  Similarity=0.218  Sum_probs=71.1

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--C-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALL--G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +.+|||-=||+|+=|+-.++.  + .+|++.|++ ++++.+++|+..|++.          .+.+++.+.|-...  +..
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~----------~~~~~v~~~DAn~l--l~~  117 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE----------DERIEVSNMDANVL--LYS  117 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S----------GCCEEEEES-HHHH--HCH
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc----------CceEEEehhhHHHH--hhh
Confidence            458999999999999999987  3 359999995 4999999999999863          12566666554211  112


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ....||+|=..+ +   ..+..+++...+.++.||.++++..
T Consensus       118 ~~~~fD~IDlDP-f---GSp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  118 RQERFDVIDLDP-F---GSPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             STT-EEEEEE---S---S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             ccccCCEEEeCC-C---CCccHhHHHHHHHhhcCCEEEEecc
Confidence            367899997754 3   4567899999999999999999864

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.23  E-value=0.013  Score=46.48  Aligned_cols=126  Identities=15%  Similarity=0.118  Sum_probs=77.5

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ..+|.+||-||+.+|..--+++.. |  ..|.+++.+. ..+..-.-++.              -.+|-..-.|-..+..
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--------------R~NIiPIl~DAr~P~~  136 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--------------RPNIIPILEDARHPEK  136 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------------STTEEEEES-TTSGGG
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--------------CCceeeeeccCCChHH
Confidence            345889999999999877777754 4  3599999844 43433332222              1256666666665544


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh-------hHHHHHHHHHHh-CCeEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWKS-NFNVK  181 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~-------~~~~~~~~~~~~-~~~v~  181 (199)
                      ....-+..|+|++.=.  .+.-.+-++......|++||.++++.+.+.-       .++..-.+.+.. +|++.
T Consensus       137 Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~~~~  208 (229)
T PF01269_consen  137 YRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGFKPL  208 (229)
T ss_dssp             GTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTCEEE
T ss_pred             hhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCCChh
Confidence            4333457888887521  3445666778888899999999999876432       224444455544 68773

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.18  E-value=0.0058  Score=45.14  Aligned_cols=105  Identities=17%  Similarity=0.074  Sum_probs=63.1

Q ss_pred             eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC-CCccEEEEeccccCCc-------
Q 029065           66 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA-PPFDYIIGTDVVYAEH-------  136 (199)
Q Consensus        66 ~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~~fD~Ii~~~~~~~~~-------  136 (199)
                      +|++.|+ .++++.+++.+...+.           ..++++...+-.+....  .. +++|+++.|=-+....       
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----------~~~v~li~~sHe~l~~~--i~~~~v~~~iFNLGYLPggDk~i~T~   67 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGL-----------EDRVTLILDSHENLDEY--IPEGPVDAAIFNLGYLPGGDKSITTK   67 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT------------GSGEEEEES-GGGGGGT----S--EEEEEEEESB-CTS-TTSB--
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCC-----------CCcEEEEECCHHHHHhh--CccCCcCEEEEECCcCCCCCCCCCcC
Confidence            5899999 6699999999988864           34677777554433322  23 4899999874332222       


Q ss_pred             --ChHHHHHHHHHhcCCCcEEEEEEEecChh------HHHHHHHHHH-hCCeEEEe
Q 029065          137 --LLEPLLQTIFALSGPKTTILLGYEIRSTS------VHEQMLQMWK-SNFNVKLV  183 (199)
Q Consensus       137 --~~~~~l~~l~~~l~~~g~i~i~~~~~~~~------~~~~~~~~~~-~~~~v~~~  183 (199)
                        .--..++.+.++|++||.+.++....++.      ....|++.+. +.|.|...
T Consensus        68 ~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~  123 (140)
T PF06962_consen   68 PETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKY  123 (140)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred             cHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEE
Confidence              24456677778899999987766654432      1334555554 36877544

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.16  E-value=0.0083  Score=48.96  Aligned_cols=105  Identities=11%  Similarity=-0.010  Sum_probs=69.9

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhC---CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .-.|.+|||-|+|+|.+|.++++.-   .++...|+-+ -.+.|++-....+.           .+++++.+-|+-....
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----------~~~vt~~hrDVc~~GF  171 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----------GDNVTVTHRDVCGSGF  171 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----------CcceEEEEeecccCCc
Confidence            3468999999999999999999874   4588889843 55566666666653           6788888877743221


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      . .-...+|.|+..-     ..+-..+..+...|+.+|.-+.+...
T Consensus       172 ~-~ks~~aDaVFLDl-----PaPw~AiPha~~~lk~~g~r~csFSP  211 (314)
T KOG2915|consen  172 L-IKSLKADAVFLDL-----PAPWEAIPHAAKILKDEGGRLCSFSP  211 (314)
T ss_pred             c-ccccccceEEEcC-----CChhhhhhhhHHHhhhcCceEEeccH
Confidence            1 1134677766642     34445555666678877765555543

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.12  E-value=0.0012  Score=55.56  Aligned_cols=110  Identities=15%  Similarity=0.228  Sum_probs=68.5

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHh-hC---CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMAL-LG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~-~g---~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..|+.++|||+|.|+|. +++++. .-   ..++.++.+.+++..-..+..|-.                ....||...+
T Consensus       110 ~dfapqsiLDvG~GPgt-gl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~----------------t~~td~r~s~  172 (484)
T COG5459         110 PDFAPQSILDVGAGPGT-GLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS----------------TEKTDWRASD  172 (484)
T ss_pred             CCcCcchhhccCCCCch-hhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc----------------cccCCCCCCc
Confidence            56788899999999986 444442 21   237777766666655555555421                1113333222


Q ss_pred             cc-----cccCCCccEEEEeccccCCcC---hHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065          115 HI-----KAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRSTS  165 (199)
Q Consensus       115 ~~-----~~~~~~fD~Ii~~~~~~~~~~---~~~~l~~l~~~l~~~g~i~i~~~~~~~~  165 (199)
                      ..     -.....|+++++.+-+.+...   ++..++.+..++.|||.++|+.+.-.-.
T Consensus       173 vt~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G  231 (484)
T COG5459         173 VTEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG  231 (484)
T ss_pred             cchhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence            11     112346899888777766443   5567888888899999999988765444

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.11  E-value=0.0045  Score=48.86  Aligned_cols=112  Identities=16%  Similarity=0.104  Sum_probs=71.6

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCc
Q 029065           44 KRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF  123 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~f  123 (199)
                      .++||+||=+.-..+.-.. --.|+.+|+...                          .-.+.+.|+..........+.|
T Consensus        53 lrlLEVGals~~N~~s~~~-~fdvt~IDLns~--------------------------~~~I~qqDFm~rplp~~~~e~F  105 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSG-WFDVTRIDLNSQ--------------------------HPGILQQDFMERPLPKNESEKF  105 (219)
T ss_pred             ceEEeecccCCCCcccccC-ceeeEEeecCCC--------------------------CCCceeeccccCCCCCCcccce
Confidence            6999999965433333221 234999996331                          2244556776554433446789


Q ss_pred             cEEEEeccccCCcC---hHHHHHHHHHhcCCCcE-----EEEEEEecCh-----hHHHHHHHHHHh-CCeEEE
Q 029065          124 DYIIGTDVVYAEHL---LEPLLQTIFALSGPKTT-----ILLGYEIRST-----SVHEQMLQMWKS-NFNVKL  182 (199)
Q Consensus       124 D~Ii~~~~~~~~~~---~~~~l~~l~~~l~~~g~-----i~i~~~~~~~-----~~~~~~~~~~~~-~~~v~~  182 (199)
                      |+|.++=++.+.+.   .-.++..+.++|+|+|.     ++|+.|...-     -..+.|...+.. ||....
T Consensus       106 dvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~  178 (219)
T PF11968_consen  106 DVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTRVK  178 (219)
T ss_pred             eEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEEEE
Confidence            99999988877554   55788888999999999     8888875321     123455555543 665543

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.05  E-value=0.0049  Score=50.97  Aligned_cols=129  Identities=21%  Similarity=0.255  Sum_probs=84.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .|..|||+.+++|-=+.+++.. +  ..|++.|++ .-+...+.++.+.+.            .++.....|...... .
T Consensus        85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------------~~v~~~~~D~~~~~~-~  151 (283)
T PF01189_consen   85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------------FNVIVINADARKLDP-K  151 (283)
T ss_dssp             TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------------SSEEEEESHHHHHHH-H
T ss_pred             ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------------ceEEEEeeccccccc-c
Confidence            6788999999999877777754 3  469999994 488888999888773            356666544432211 1


Q ss_pred             ccCCCccEEEEeccccCC------c----------------ChHHHHHHHHHhc----CCCcEEEEEEEe----cChhHH
Q 029065          118 AVAPPFDYIIGTDVVYAE------H----------------LLEPLLQTIFALS----GPKTTILLGYEI----RSTSVH  167 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~------~----------------~~~~~l~~l~~~l----~~~g~i~i~~~~----~~~~~~  167 (199)
                      .....||.|+...+.-..      .                .-..++....+++    +|||.++-++..    .+..+.
T Consensus       152 ~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV  231 (283)
T PF01189_consen  152 KPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVV  231 (283)
T ss_dssp             HHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHH
T ss_pred             ccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHH
Confidence            223469999987655221      1                2556778888889    999998777754    233445


Q ss_pred             HHHHHHHHhCCeEEEec
Q 029065          168 EQMLQMWKSNFNVKLVP  184 (199)
Q Consensus       168 ~~~~~~~~~~~~v~~~~  184 (199)
                      +.|++.. ..|+...+.
T Consensus       232 ~~fl~~~-~~~~l~~~~  247 (283)
T PF01189_consen  232 EKFLKRH-PDFELVPIP  247 (283)
T ss_dssp             HHHHHHS-TSEEEECCE
T ss_pred             HHHHHhC-CCcEEEecc
Confidence            5666643 235544333

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.04  E-value=0.0018  Score=47.82  Aligned_cols=47  Identities=17%  Similarity=0.186  Sum_probs=37.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHHh------hCCeEEEeech-hHHHHHHHHHHHhh
Q 029065           41 LKGKRVIELGAGCGVAGFGMAL------LGCNVITTDQI-EVLPLLKRNVEWNT   87 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~------~g~~v~~~D~~-~~l~~a~~~~~~~~   87 (199)
                      -+..+|+|+|||.|.+|..++.      .+.+|+++|.+ ...+.+.......+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            3567999999999999999998      36679999984 47777776665543

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.96  E-value=0.00021  Score=49.90  Aligned_cols=99  Identities=12%  Similarity=0.060  Sum_probs=38.4

Q ss_pred             EEeCCCcChHHHHHHhh---C--CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           47 IELGAGCGVAGFGMALL---G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        47 LdlGcG~G~~sl~la~~---g--~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      ||+|+..|..++.++..   .  .+++++|.....+.+++.+...+.           ..++++...+..+... ....+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~-----------~~~~~~~~g~s~~~l~-~~~~~   68 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGL-----------SDRVEFIQGDSPDFLP-SLPDG   68 (106)
T ss_dssp             --------------------------EEEESS------------GGG------------BTEEEEES-THHHHH-HHHH-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCC-----------CCeEEEEEcCcHHHHH-HcCCC
Confidence            79999999877776643   2  369999983323334444433332           3367777766532211 11147


Q ss_pred             CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      +||+|+.... +..+....-+..+...|+|||.+++-
T Consensus        69 ~~dli~iDg~-H~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   69 PIDLIFIDGD-HSYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             -EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CEEEEEECCC-CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            8999988652 23345566677778889999988764

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.93  E-value=0.0052  Score=51.69  Aligned_cols=98  Identities=15%  Similarity=0.075  Sum_probs=70.4

Q ss_pred             CCC-CcEEEeCCCcChHHHHHHhhCCeEEEeec--hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKG-KRVIELGAGCGVAGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~-~~VLdlGcG~G~~sl~la~~g~~v~~~D~--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      |++ ...+|+|.|.|.+.-.+...-.+|-+++.  +.+++.+... . .+               |+....|....    
T Consensus       175 f~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~-~-~g---------------V~~v~gdmfq~----  233 (342)
T KOG3178|consen  175 FKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYL-A-PG---------------VEHVAGDMFQD----  233 (342)
T ss_pred             cccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhh-c-CC---------------cceeccccccc----
Confidence            444 68999999999888777777666777765  4455544333 2 22               33344443322    


Q ss_pred             ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                        -+.-|+|+.-.++++  +++..++++.|.+.|+|+|.+++.+..
T Consensus       234 --~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V  277 (342)
T KOG3178|consen  234 --TPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENV  277 (342)
T ss_pred             --CCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence              235569999999988  667999999999999999999998874

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.88  E-value=0.0043  Score=53.04  Aligned_cols=104  Identities=18%  Similarity=0.202  Sum_probs=72.1

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ...+..++|+|||.|-+....+.. ++.++++|++. -+..+........+           ..+..+...++..   .+
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l-----------~~k~~~~~~~~~~---~~  173 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYL-----------DNKCNFVVADFGK---MP  173 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHh-----------hhhcceehhhhhc---CC
Confidence            344568999999999888888876 46799999854 22222222111111           1122223334332   23


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      ..+..||.+-+.+...+......++..+.+.++|||.+..
T Consensus       174 fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~  213 (364)
T KOG1269|consen  174 FEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV  213 (364)
T ss_pred             CCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence            4567899999999999999999999999999999998665

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.88  E-value=0.026  Score=44.68  Aligned_cols=115  Identities=15%  Similarity=0.058  Sum_probs=77.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.++.|+||=.|.++..+.+.+.  .+++.|+.+ .++.|.+++..+++           ..++++..+|-...   -.
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----------~~~i~vr~~dgl~~---l~   81 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----------SERIDVRLGDGLAV---LE   81 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----------cceEEEeccCCccc---cC
Confidence            356699999999999999998754  499999955 99999999988865           45777777665322   12


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHH
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM  173 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~  173 (199)
                      .+..+|+|+.+++  ....+..+++.-...|+.--. ++-.|+.+......|+..
T Consensus        82 ~~d~~d~ivIAGM--GG~lI~~ILee~~~~l~~~~r-lILQPn~~~~~LR~~L~~  133 (226)
T COG2384          82 LEDEIDVIVIAGM--GGTLIREILEEGKEKLKGVER-LILQPNIHTYELREWLSA  133 (226)
T ss_pred             ccCCcCEEEEeCC--cHHHHHHHHHHhhhhhcCcce-EEECCCCCHHHHHHHHHh
Confidence            2447999988764  233456666666666653222 344444455445555544

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.82  E-value=0.018  Score=44.62  Aligned_cols=119  Identities=13%  Similarity=0.049  Sum_probs=66.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CC--eEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe-eeCCCccc-
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDHI-  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~--~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~-  116 (199)
                      ++.+|||+||-+|.++..+-.+ +.  .|.++|+-...       ...|               ..+... |+.+.... 
T Consensus        69 p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-------p~~G---------------a~~i~~~dvtdp~~~~  126 (232)
T KOG4589|consen   69 PEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-------PPEG---------------ATIIQGNDVTDPETYR  126 (232)
T ss_pred             CCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-------CCCC---------------cccccccccCCHHHHH
Confidence            3679999999999999888865 34  49999963310       0111               122222 44444311 


Q ss_pred             ----cccCCCccEEEEeccccC-----CcChHHHHHHHHHh-------cCCCcEEEEEEEecChhHHHHHHHHHHhCC-e
Q 029065          117 ----KAVAPPFDYIIGTDVVYA-----EHLLEPLLQTIFAL-------SGPKTTILLGYEIRSTSVHEQMLQMWKSNF-N  179 (199)
Q Consensus       117 ----~~~~~~fD~Ii~~~~~~~-----~~~~~~~l~~l~~~-------l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~-~  179 (199)
                          ..++.+.|+|++. +...     ..++..+++.|..+       +.|+|.++.-.-....  ...|...+.+.| .
T Consensus       127 ki~e~lp~r~VdvVlSD-MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e--~~~l~r~l~~~f~~  203 (232)
T KOG4589|consen  127 KIFEALPNRPVDVVLSD-MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE--EALLQRRLQAVFTN  203 (232)
T ss_pred             HHHHhCCCCcccEEEec-cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc--hHHHHHHHHHHhhh
Confidence                1234678998874 3322     34566666666443       5689986654433222  344444454444 3


Q ss_pred             EEEecC
Q 029065          180 VKLVPK  185 (199)
Q Consensus       180 v~~~~~  185 (199)
                      |..+.+
T Consensus       204 Vk~vKP  209 (232)
T KOG4589|consen  204 VKKVKP  209 (232)
T ss_pred             cEeeCC
Confidence            344443

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.81  E-value=0.015  Score=47.59  Aligned_cols=125  Identities=17%  Similarity=0.188  Sum_probs=84.8

Q ss_pred             cCCCCCCCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           36 FCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        36 ~~~~~~~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      .+.+++.|+.|+=+| ---+.|+++|..|  .+|..+|+.+ .+....+.++..+            ..+++....|..+
T Consensus       146 ~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g------------~~~ie~~~~Dlr~  212 (354)
T COG1568         146 YSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG------------YNNIEAFVFDLRN  212 (354)
T ss_pred             ccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC------------ccchhheeehhcc
Confidence            478899999999999 5567777777654  4599999976 8888888877766            3467777788775


Q ss_pred             CccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCC---cEEEEEEEecChhHHHHHHHHHH
Q 029065          113 EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK---TTILLGYEIRSTSVHEQMLQMWK  175 (199)
Q Consensus       113 ~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~---g~i~i~~~~~~~~~~~~~~~~~~  175 (199)
                      ... ......||+.+..++ +-...+..++..=-..|+..   |.+.++.....-+.+..+.+.+.
T Consensus       213 plp-e~~~~kFDvfiTDPp-eTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lI  276 (354)
T COG1568         213 PLP-EDLKRKFDVFITDPP-ETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILI  276 (354)
T ss_pred             cCh-HHHHhhCCeeecCch-hhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHH
Confidence            532 233578999888544 55555666666666666654   55666655544444555545343

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.61  E-value=0.0074  Score=49.65  Aligned_cols=69  Identities=25%  Similarity=0.252  Sum_probs=47.0

Q ss_pred             cEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065           45 RVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  122 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  122 (199)
                      +|+||.||.|..++.+...|.+ |.++|.++ +++..+.|....                  ....|+.+...... .+.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~------------------~~~~Di~~~~~~~~-~~~   62 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK------------------LIEGDITKIDEKDF-IPD   62 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC------------------CccCccccCchhhc-CCC
Confidence            6999999999999999998988 78899854 777666654211                  22233333321110 357


Q ss_pred             ccEEEEeccc
Q 029065          123 FDYIIGTDVV  132 (199)
Q Consensus       123 fD~Ii~~~~~  132 (199)
                      +|+|+++++.
T Consensus        63 ~D~l~~gpPC   72 (275)
T cd00315          63 IDLLTGGFPC   72 (275)
T ss_pred             CCEEEeCCCC
Confidence            9999998776

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.56  E-value=0.018  Score=46.17  Aligned_cols=80  Identities=20%  Similarity=0.209  Sum_probs=43.3

Q ss_pred             cEEEeCCCcChHHHHHHhhCCeEEEeechh----HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           45 RVIELGAGCGVAGFGMALLGCNVITTDQIE----VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~g~~v~~~D~~~----~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      +|||.-+|-|..++.+|..|++|++++.+.    ++...-++.......      ......+|++.+.|..+...  ...
T Consensus        78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~------~~~~~~ri~l~~~d~~~~L~--~~~  149 (234)
T PF04445_consen   78 SVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPEL------LAEAMRRIQLIHGDALEYLR--QPD  149 (234)
T ss_dssp             -EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTT------HHHHHHHEEEEES-CCCHCC--CHS
T ss_pred             EEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHh------HHHHHhCCEEEcCCHHHHHh--hcC
Confidence            899999999999999999999999999754    222222222221100      00112478888877654322  346


Q ss_pred             CCccEEEEeccc
Q 029065          121 PPFDYIIGTDVV  132 (199)
Q Consensus       121 ~~fD~Ii~~~~~  132 (199)
                      .+||+|...+++
T Consensus       150 ~s~DVVY~DPMF  161 (234)
T PF04445_consen  150 NSFDVVYFDPMF  161 (234)
T ss_dssp             S--SEEEE--S-
T ss_pred             CCCCEEEECCCC
Confidence            799999996554

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.54  E-value=0.01  Score=48.43  Aligned_cols=106  Identities=17%  Similarity=0.164  Sum_probs=61.4

Q ss_pred             CcEEEeCCCc---ChHHHHHHh---hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           44 KRVIELGAGC---GVAGFGMAL---LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        44 ~~VLdlGcG~---G~~sl~la~---~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ...||||||.   |. .-..|+   -.++|+.+|... ++..++.-+..+.            .....+...|..+....
T Consensus        70 rQFLDlGsGlPT~~n-vHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------------~g~t~~v~aD~r~p~~i  136 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGN-VHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------------RGRTAYVQADLRDPEAI  136 (267)
T ss_dssp             -EEEEET--S--SS--HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------------TSEEEEEE--TT-HHHH
T ss_pred             ceEEEcccCCCCCCC-HhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------------CccEEEEeCCCCCHHHH
Confidence            3799999994   33 333333   267899999955 8888877665542            11367888888766422


Q ss_pred             cc---cC-----CCccEEEEeccccC---CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 KA---VA-----PPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 ~~---~~-----~~fD~Ii~~~~~~~---~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      -.   ..     .+.=.++...++++   ..+...++..+.+.|.||..+.|+....
T Consensus       137 L~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~  193 (267)
T PF04672_consen  137 LAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATD  193 (267)
T ss_dssp             HCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred             hcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence            10   11     12224556667766   3578999999999999999888887654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.36  E-value=0.085  Score=45.63  Aligned_cols=111  Identities=18%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             CCCcEEEeCCCcChHHHHHH-hhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMA-LLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la-~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      +|.+|||+.|-+|-=+.++| .+..  .|++.|.+. -+...+.|+.+.|.            .+..+.+.|-..+....
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------------~ntiv~n~D~~ef~~~~  308 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------------TNTIVSNYDGREFPEKE  308 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------------CceEEEccCcccccccc
Confidence            68899999999975444444 3333  499999855 78888889988873            23444444543322111


Q ss_pred             ccCCCccEEEEeccccC------C----------------cChHHHHHHHHHhcCCCcEEEEEEEecChh
Q 029065          118 AVAPPFDYIIGTDVVYA------E----------------HLLEPLLQTIFALSGPKTTILLGYEIRSTS  165 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~------~----------------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~  165 (199)
                       ..++||-|+...+.-.      .                ....+++....+++++||.++-++..-..+
T Consensus       309 -~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~  377 (460)
T KOG1122|consen  309 -FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVE  377 (460)
T ss_pred             -cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchh
Confidence             2348999986655422      1                124566677778889999988887754443

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.35  E-value=0.0039  Score=52.43  Aligned_cols=107  Identities=20%  Similarity=0.087  Sum_probs=71.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHH-------HHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLP-------LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~-------~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      .|+.|.|=..|||.+-+.+|..|+-|+|+|++- +++       .++.|...-+.          ...-+.+...|..+.
T Consensus       208 pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~----------~~~fldvl~~D~sn~  277 (421)
T KOG2671|consen  208 PGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGS----------SSQFLDVLTADFSNP  277 (421)
T ss_pred             CCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCC----------cchhhheeeecccCc
Confidence            588999999999998999999999999999865 444       23444444332          133466667776544


Q ss_pred             ccccccCCCccEEEEeccccCC---------------------------------cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          114 DHIKAVAPPFDYIIGTDVVYAE---------------------------------HLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       114 ~~~~~~~~~fD~Ii~~~~~~~~---------------------------------~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..-.  +-.||.||+.+++--.                                 +.+.+++.-..+.|..||.+.+=.+
T Consensus       278 ~~rs--n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p  355 (421)
T KOG2671|consen  278 PLRS--NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP  355 (421)
T ss_pred             chhh--cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence            3221  4579999998876110                                 1244555556667788998766554

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.34  E-value=0.0071  Score=48.28  Aligned_cols=88  Identities=13%  Similarity=0.061  Sum_probs=54.2

Q ss_pred             CCCCC-CCCcEEEeCCCcCh-HHHHHHh-hCCeEEEeechh-HHHHHHHHHHHh-hhccccCCCCCCCCCcEEEEEeee-
Q 029065           37 CPSKL-KGKRVIELGAGCGV-AGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDW-  110 (199)
Q Consensus        37 ~~~~~-~~~~VLdlGcG~G~-~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~d~-  110 (199)
                      ++... ++.++||||.|.-. ..+.-.+ .|-+.+|+|++. .+..|+.++..| ++           ...|+.....= 
T Consensus        72 ~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l-----------~~~I~lr~qk~~  140 (292)
T COG3129          72 SGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL-----------ERAIRLRRQKDS  140 (292)
T ss_pred             CCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch-----------hhheeEEeccCc
Confidence            34433 56799999999743 3333332 377899999955 999999999887 32           22344332110 


Q ss_pred             CCC-ccccccCCCccEEEEeccccCC
Q 029065          111 GNE-DHIKAVAPPFDYIIGTDVVYAE  135 (199)
Q Consensus       111 ~~~-~~~~~~~~~fD~Ii~~~~~~~~  135 (199)
                      ... +....-+++||.+++++++|..
T Consensus       141 ~~if~giig~nE~yd~tlCNPPFh~s  166 (292)
T COG3129         141 DAIFNGIIGKNERYDATLCNPPFHDS  166 (292)
T ss_pred             cccccccccccceeeeEecCCCcchh
Confidence            000 0111225689999999998764

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.33  E-value=0.022  Score=48.37  Aligned_cols=100  Identities=20%  Similarity=0.264  Sum_probs=69.2

Q ss_pred             CCcEEEeCCCcChHHHHHHhh-CC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~-g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++|||--||+|+=|+-+|.. +. +|++.|++ ++.+.+++|+..|..            ......+.|-.  ......
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------------~~~~v~n~DAN--~lm~~~  118 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------------EDAEVINKDAN--ALLHEL  118 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc------------ccceeecchHH--HHHHhc
Confidence            679999999999999999976 44 69999995 599999999999831            12233222211  011111


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ...||+|=.. |+   ..+.++++...+..+.+|.+-++..
T Consensus       119 ~~~fd~IDiD-PF---GSPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         119 HRAFDVIDID-PF---GSPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             CCCccEEecC-CC---CCCchHHHHHHHHhhcCCEEEEEec
Confidence            3679988654 33   3455788888888888888877654

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=96.30  E-value=0.031  Score=46.61  Aligned_cols=114  Identities=18%  Similarity=0.221  Sum_probs=69.9

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHH---H--hhhcc-----ccCC-----------------C
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVE---W--NTSRI-----SQMN-----------------P   95 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~---~--~~~~~-----~~~~-----------------~   95 (199)
                      ..+||==|||.|.++.-+|..|..+-|.+.+...-.+..-+.   .  |...+     ..++                 |
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p  230 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP  230 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence            458999999999999999999999999987762223322221   1  11111     0000                 1


Q ss_pred             --CCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEE
Q 029065           96 --GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  156 (199)
Q Consensus        96 --~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~  156 (199)
                        .+..........+|+.+.-......+.||+|+.+-.+=-.+++-+.++++...|+|||..+
T Consensus       231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi  293 (369)
T KOG2798|consen  231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI  293 (369)
T ss_pred             cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence              1112223344445554332222223579999988433346789999999999999998743

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.05  E-value=0.085  Score=47.18  Aligned_cols=106  Identities=24%  Similarity=0.227  Sum_probs=62.2

Q ss_pred             CCCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEee-------
Q 029065           40 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD-------  109 (199)
Q Consensus        40 ~~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-------  109 (199)
                      ...+.+|+=+|||. |+.++..|+ .|++|+++|. ++.++.++.    .+..+-          .+.....+       
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes----lGA~~v----------~i~~~e~~~~~~gya  227 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES----MGAEFL----------ELDFEEEGGSGDGYA  227 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCeEE----------Eeccccccccccchh
Confidence            45688999999997 998888885 4999999998 446666654    221100          00100000       


Q ss_pred             --eCCCc------cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          110 --WGNED------HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       110 --~~~~~------~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                        .....      ......+.+|+||..-..-....+.-+.+...+.++|||.+....
T Consensus       228 ~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg  285 (509)
T PRK09424        228 KVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA  285 (509)
T ss_pred             hhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence              00000      000001469999986543222234344588899999999865544

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=95.96  E-value=0.094  Score=44.44  Aligned_cols=111  Identities=13%  Similarity=0.001  Sum_probs=57.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh------------C------CeEEEeech--h---HHHHHHHHHHHhhhccccCCCCCC
Q 029065           42 KGKRVIELGAGCGVAGFGMALL------------G------CNVITTDQI--E---VLPLLKRNVEWNTSRISQMNPGSD   98 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~------------g------~~v~~~D~~--~---~l~~a~~~~~~~~~~~~~~~~~~~   98 (199)
                      +..+|+|+||-+|..++.+...            +      -+|+..|++  +   +....-........          
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~----------   85 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK----------   85 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH----------
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC----------
Confidence            3469999999999888777631            1      258888973  2   22222222111110          


Q ss_pred             CCCcEEEEEeeeCCCccccccCCCccEEEEeccccCCc---------------------------------------ChH
Q 029065           99 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------------------------------------LLE  139 (199)
Q Consensus        99 ~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~---------------------------------------~~~  139 (199)
                       ...+. ..+--+.+-..-.+.+..|+++++-.++|.+                                       ++.
T Consensus        86 -~~~~f-~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~  163 (334)
T PF03492_consen   86 -FRNYF-VSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFS  163 (334)
T ss_dssp             -TTSEE-EEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHH
T ss_pred             -CceEE-EEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHH
Confidence             11222 2222233333335567889988888776622                                       244


Q ss_pred             HHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          140 PLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       140 ~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      .+++...+=|+|||.+++....|..
T Consensus       164 ~FL~~Ra~ELv~GG~mvl~~~gr~~  188 (334)
T PF03492_consen  164 SFLKARAEELVPGGRMVLTFLGRDE  188 (334)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEEE-ST
T ss_pred             HHHHHhhheeccCcEEEEEEeeccc
Confidence            4555555557899999999988765

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.87  E-value=0.039  Score=46.65  Aligned_cols=95  Identities=26%  Similarity=0.241  Sum_probs=60.0

Q ss_pred             CCCCCcEEEeCCC-cChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           40 KLKGKRVIELGAG-CGVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG-~G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .-+|++|+=.|+| .|.+++.+|+ .|++|+++|.++ -++.|++-    +.             . .+  .++.+.+..
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GA-------------d-~~--i~~~~~~~~  223 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GA-------------D-HV--INSSDSDAL  223 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CC-------------c-EE--EEcCCchhh
Confidence            3458899999997 3568888887 699999999855 66666543    21             0 11  222212222


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ....+.||+|+..-      . ...+....+.|+++|.+.+....
T Consensus       224 ~~~~~~~d~ii~tv------~-~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         224 EAVKEIADAIIDTV------G-PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             HHhHhhCcEEEECC------C-hhhHHHHHHHHhcCCEEEEECCC
Confidence            22233499988752      2 56667777888888887666544

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.75  E-value=0.023  Score=50.15  Aligned_cols=121  Identities=14%  Similarity=0.156  Sum_probs=69.1

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065           44 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  122 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  122 (199)
                      .+|+|+.+|.|-.+.+|....  |...-. +..-......+-..|+               --...||-+.  +......
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~~~~ntL~vIydRGL---------------IG~yhDWCE~--fsTYPRT  427 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDP--VWVMNVVPVSGPNTLPVIYDRGL---------------IGVYHDWCEA--FSTYPRT  427 (506)
T ss_pred             eeeeeecccccHHHHHhccCC--ceEEEecccCCCCcchhhhhccc---------------chhccchhhc--cCCCCcc
Confidence            389999999996665555433  333321 1111111112222222               2233466322  2334578


Q ss_pred             ccEEEEeccccC---CcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEecCC
Q 029065          123 FDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKA  186 (199)
Q Consensus       123 fD~Ii~~~~~~~---~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~  186 (199)
                      ||+|.++.++-.   .-.+..++-.+.|.|+|+|.++|-+..   ++.......+. -.|++..+..+
T Consensus       428 YDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~---~vl~~v~~i~~~lrW~~~~~d~e  492 (506)
T PF03141_consen  428 YDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV---DVLEKVKKIAKSLRWEVRIHDTE  492 (506)
T ss_pred             hhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH---HHHHHHHHHHHhCcceEEEEecC
Confidence            999999987744   335788999999999999999996653   33333333332 24666554443

; GO: 0008168 methyltransferase activity

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.67  E-value=0.022  Score=47.22  Aligned_cols=68  Identities=22%  Similarity=0.231  Sum_probs=44.6

Q ss_pred             cEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065           45 RVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  122 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  122 (199)
                      +++||.||.|-+++.+...|.+ |.++|+++ +.+.-+.|..                   .....|+...+...... .
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------------~~~~~Di~~~~~~~l~~-~   61 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------------EVICGDITEIDPSDLPK-D   61 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------------EEEESHGGGCHHHHHHH-T
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------------ccccccccccccccccc-c
Confidence            6899999999999999999987 88889854 6666655542                   34445555443222222 5


Q ss_pred             ccEEEEeccc
Q 029065          123 FDYIIGTDVV  132 (199)
Q Consensus       123 fD~Ii~~~~~  132 (199)
                      +|++++.+|.
T Consensus        62 ~D~l~ggpPC   71 (335)
T PF00145_consen   62 VDLLIGGPPC   71 (335)
T ss_dssp             -SEEEEE---
T ss_pred             ceEEEeccCC
Confidence            9999998775

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=95.64  E-value=0.17  Score=43.30  Aligned_cols=110  Identities=15%  Similarity=0.121  Sum_probs=70.2

Q ss_pred             CC-CcEEEeCCCcChHHHHHHhhC--CeEEEeec-hhHHHHHHHHHHHhhh-ccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           42 KG-KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTS-RISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~-~~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++ .+||=||.|-|+....+.+.-  .+++.+|+ ++|++.++.+...... ..+.++|      ++++..-|-.  ...
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dp------Rv~Vv~dDAf--~wl  359 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDP------RVTVVNDDAF--QWL  359 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCC------eeEEEeccHH--HHH
Confidence            44 589999999999888887753  46999999 6699999865543321 1122233      5666554432  112


Q ss_pred             cccCCCccEEEEeccccCC-----cChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 KAVAPPFDYIIGTDVVYAE-----HLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~-----~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ......||.||..=+=-..     -.-.++...+++.|+++|.+++-.
T Consensus       360 r~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         360 RTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             HhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence            2334589999875211111     123466777889999999877754

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.63  E-value=0.7  Score=36.41  Aligned_cols=108  Identities=16%  Similarity=0.127  Sum_probs=65.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-C-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      -+|.+||=||+-+|...-+.+.. | ..+.+++.+ ...+-....+...              .++-....|-..++...
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--------------~Ni~PIL~DA~~P~~Y~  140 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--------------PNIIPILEDARKPEKYR  140 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--------------CCceeeecccCCcHHhh
Confidence            36889999999999877777754 5 359999984 3443333322221              14444444544333222


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      ..-+..|+|...=  -.+.-.+-+.......|+++|.++++.+.|.-
T Consensus       141 ~~Ve~VDviy~DV--AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSI  185 (231)
T COG1889         141 HLVEKVDVIYQDV--AQPNQAEILADNAEFFLKKGGYVVIAIKARSI  185 (231)
T ss_pred             hhcccccEEEEec--CCchHHHHHHHHHHHhcccCCeEEEEEEeecc
Confidence            2224566665431  11334555677778899999999999887763

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.62  E-value=0.01  Score=52.10  Aligned_cols=107  Identities=21%  Similarity=0.166  Sum_probs=73.8

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhh--CC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALL--GC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~--g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ...++.+|||-=|++|+-++-.|+.  |. +|++.|.++ +++..++|+..|+.           .+.++..+.|....-
T Consensus       106 ~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----------~~ive~~~~DA~~lM  174 (525)
T KOG1253|consen  106 REEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----------EDIVEPHHSDANVLM  174 (525)
T ss_pred             hccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----------hhhcccccchHHHHH
Confidence            3445679999999999999999976  43 499999855 99999999999854           223444443332110


Q ss_pred             -cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          115 -HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       115 -~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                       ........||+|=..+ +   .....+++...+.++.||.++++-.
T Consensus       175 ~~~~~~~~~FDvIDLDP-y---Gs~s~FLDsAvqav~~gGLL~vT~T  217 (525)
T KOG1253|consen  175 YEHPMVAKFFDVIDLDP-Y---GSPSPFLDSAVQAVRDGGLLCVTCT  217 (525)
T ss_pred             HhccccccccceEecCC-C---CCccHHHHHHHHHhhcCCEEEEEec
Confidence             1112246899997754 2   2344677777788889999888753

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=95.61  E-value=0.14  Score=44.11  Aligned_cols=26  Identities=15%  Similarity=0.020  Sum_probs=18.5

Q ss_pred             hHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          138 LEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       138 ~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      +..+++...+=|.|||.+++....|.
T Consensus       216 ~~~FL~~Ra~ELvpGG~mvl~~~Gr~  241 (386)
T PLN02668        216 LAGFLRARAQEMKRGGAMFLVCLGRT  241 (386)
T ss_pred             HHHHHHHHHHHhccCcEEEEEEecCC
Confidence            34455555566789999999987764

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.55  E-value=0.027  Score=44.07  Aligned_cols=40  Identities=25%  Similarity=0.287  Sum_probs=32.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKR   81 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~   81 (199)
                      +|..|||-.||+|..++++..+|-+.+++|+++ .++.|++
T Consensus       191 ~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  191 PGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             cceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            478999999999999999999999999999954 8887753

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=95.49  E-value=0.098  Score=46.02  Aligned_cols=99  Identities=18%  Similarity=0.250  Sum_probs=69.0

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHH-HHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           44 KRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKR-NVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      -++|-+|||---++..+-.-|.+ ++.+|++. ++..+.. ++ ..             ...+.+...|.   ......+
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~-------------~~~~~~~~~d~---~~l~fed  112 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KE-------------RPEMQMVEMDM---DQLVFED  112 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cC-------------CcceEEEEecc---hhccCCC
Confidence            48999999999888888888887 99999976 5554433 32 11             23566666555   3344557


Q ss_pred             CCccEEEEeccccC----------CcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          121 PPFDYIIGTDVVYA----------EHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~----------~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      +.||+|+.-+.+-.          .......+..+.++++++|..+...
T Consensus       113 ESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt  161 (482)
T KOG2352|consen  113 ESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT  161 (482)
T ss_pred             cceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence            89999997766632          2235566788889999999854443

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.41  E-value=0.064  Score=42.15  Aligned_cols=115  Identities=10%  Similarity=0.008  Sum_probs=63.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCe--EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~--v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +.-.+.|||||-|-+-+.++.....  ++|.++ ..+.+..+..+.....     .|...-..++.+...+-......-.
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~-----~~a~~~~~ni~vlr~namk~lpn~f  134 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRR-----TSAEGQYPNISVLRTNAMKFLPNFF  134 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhc-----cccccccccceeeeccchhhccchh
Confidence            4457999999999888888877654  899998 4488888777754431     1111223344444322211100001


Q ss_pred             cCCC--ccEEEEeccccCCc------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          119 VAPP--FDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       119 ~~~~--fD~Ii~~~~~~~~~------~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..++  -+..+.-++-+...      .-..++.....+|+++|.+|...-.
T Consensus       135 ~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv  185 (249)
T KOG3115|consen  135 EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV  185 (249)
T ss_pred             hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence            1111  22222223322211      2345667777889999999887654

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.34  E-value=0.05  Score=45.60  Aligned_cols=97  Identities=21%  Similarity=0.162  Sum_probs=62.0

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEE-E----eeeCC
Q 029065           42 KGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-E----LDWGN  112 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~-~----~d~~~  112 (199)
                      .|.+||=+|+|+ |+.++..|+. |+. |+.+|.. .-++.|++ +.-.               .+... .    .++.+
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~---------------~~~~~~~~~~~~~~~~  232 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT---------------VTDPSSHKSSPQELAE  232 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe---------------EEeeccccccHHHHHH
Confidence            478999999997 9999888875 775 9999984 48888887 3111               11100 0    00000


Q ss_pred             CccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          113 EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       113 ~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      .-........+|+.+-.      +-.+.-+++....++.+|.+.++.-
T Consensus       233 ~v~~~~g~~~~d~~~dC------sG~~~~~~aai~a~r~gGt~vlvg~  274 (354)
T KOG0024|consen  233 LVEKALGKKQPDVTFDC------SGAEVTIRAAIKATRSGGTVVLVGM  274 (354)
T ss_pred             HHHhhccccCCCeEEEc------cCchHHHHHHHHHhccCCEEEEecc
Confidence            00001112357776654      4567778888888999999877763

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.14  E-value=0.067  Score=45.51  Aligned_cols=99  Identities=24%  Similarity=0.269  Sum_probs=60.1

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe-eeCCCcc
Q 029065           41 LKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~  115 (199)
                      ..+.+|+=+|||+ |++++.+++. |+. |+++|. ++-++.|++.....               .+..... +... ..
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~---------------~~~~~~~~~~~~-~~  230 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD---------------VVVNPSEDDAGA-EI  230 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe---------------EeecCccccHHH-HH
Confidence            3444899999998 9998888865 665 999998 44777776632111               0111100 0000 00


Q ss_pred             ccccC-CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          116 IKAVA-PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       116 ~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..... ..+|+++-.--      ....+....++++++|.+.+..-.
T Consensus       231 ~~~t~g~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         231 LELTGGRGADVVIEAVG------SPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             HHHhCCCCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEecc
Confidence            01112 36999875532      556888999999999987655443

>PRK11524 putative methyltransferase; Provisional

Probab=95.11  E-value=0.055  Score=44.68  Aligned_cols=44  Identities=20%  Similarity=0.162  Sum_probs=38.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW   85 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~   85 (199)
                      +|..|||-.||+|..++++.++|-+.+|+|+ ++.++.|++.+..
T Consensus       208 ~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        208 PGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            5789999999999999999999999999999 5588999888754

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=95.10  E-value=0.085  Score=40.01  Aligned_cols=99  Identities=16%  Similarity=0.117  Sum_probs=65.7

Q ss_pred             CCcEEEeCCCcChHHHHH-HhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-ccC
Q 029065           43 GKRVIELGAGCGVAGFGM-ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~l-a~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~  120 (199)
                      +.+|+=|||=+-...+.- ...+.+++..|+..-.       ..-             ... .+...|.......+ ...
T Consensus        26 ~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF-------~~~-------------~~~-~F~fyD~~~p~~~~~~l~   84 (162)
T PF10237_consen   26 DTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRF-------EQF-------------GGD-EFVFYDYNEPEELPEELK   84 (162)
T ss_pred             CCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchH-------Hhc-------------CCc-ceEECCCCChhhhhhhcC
Confidence            467888877553333222 1124568888875411       111             112 45567776654433 225


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      +.||+||+.+|+...+.+.....+++.++++++.++++....
T Consensus        85 ~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~  126 (162)
T PF10237_consen   85 GKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE  126 (162)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence            799999999999888888899999999999999988887643

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=95.08  E-value=0.8  Score=39.13  Aligned_cols=131  Identities=15%  Similarity=0.067  Sum_probs=70.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--C----eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--C----NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~----~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      +|.+|||+.+-+|-=++.+....  .    .|++.|... -+...+..+..-.            ...+.+...+.....
T Consensus       155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------------~~~~~v~~~~~~~~p  222 (375)
T KOG2198|consen  155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------------SPNLLVTNHDASLFP  222 (375)
T ss_pred             CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------------Ccceeeecccceecc
Confidence            57899999999986554443322  2    699999733 3333322222111            112222222221111


Q ss_pred             cc------cccCCCccEEEEeccccCCc-----------------------ChHHHHHHHHHhcCCCcEEEEEEEe----
Q 029065          115 HI------KAVAPPFDYIIGTDVVYAEH-----------------------LLEPLLQTIFALSGPKTTILLGYEI----  161 (199)
Q Consensus       115 ~~------~~~~~~fD~Ii~~~~~~~~~-----------------------~~~~~l~~l~~~l~~~g~i~i~~~~----  161 (199)
                      ..      ......||-|++.-+.-++.                       .--.++....++|++||.++-++..    
T Consensus       223 ~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi  302 (375)
T KOG2198|consen  223 NIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI  302 (375)
T ss_pred             ccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch
Confidence            11      11124688887653331111                       1234566667889999999888754    


Q ss_pred             cChhHHHHHHHHHHhCCeEEEec
Q 029065          162 RSTSVHEQMLQMWKSNFNVKLVP  184 (199)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~v~~~~  184 (199)
                      ++..+.+..++.++..+..-.+.
T Consensus       303 eNEaVV~~~L~~~~~~~~lv~~~  325 (375)
T KOG2198|consen  303 ENEAVVQEALQKVGGAVELVDVS  325 (375)
T ss_pred             hhHHHHHHHHHHhcCcccceeec
Confidence            44556777777776666554443

>KOG3350 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.98  E-value=0.057  Score=41.42  Aligned_cols=89  Identities=16%  Similarity=0.170  Sum_probs=60.8

Q ss_pred             EEEEeeeCCCcccc-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEE
Q 029065          104 QAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL  182 (199)
Q Consensus       104 ~~~~~d~~~~~~~~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~  182 (199)
                      ++...|+..+..++ .....||+|++.+|+...+.+.+--..++++.+++-.++++...+-.++....+....-.|.++ 
T Consensus       116 eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~s~~l~~~~~sF~Pe-  194 (217)
T KOG3350|consen  116 EFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWASALLPVLKCSFRPE-  194 (217)
T ss_pred             eeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHHHHHhhhhhccccch-
Confidence            66677777665443 2346799999999999999999999999999999888888876544444444444333344443 


Q ss_pred             ecCCCcCcccCC
Q 029065          183 VPKAKESTMWGN  194 (199)
Q Consensus       183 ~~~~~~~~~~~~  194 (199)
                       ..+-+.+.|+.
T Consensus       195 -H~~nLaNeF~c  205 (217)
T KOG3350|consen  195 -HERNLANEFRC  205 (217)
T ss_pred             -hhcccccceeE
Confidence             33445555553

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.90  E-value=0.25  Score=40.97  Aligned_cols=82  Identities=16%  Similarity=0.189  Sum_probs=59.2

Q ss_pred             CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      -+.+++|+.||==|+|.|+   +++.+|++|++++..|++. ..+...+.+..+|              ++....+|..+
T Consensus        32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--------------~~~~y~cdis~   97 (300)
T KOG1201|consen   32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--------------EAKAYTCDISD   97 (300)
T ss_pred             chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--------------ceeEEEecCCC
Confidence            3467889999999999985   8888899999999999844 4444444444433              56778888877


Q ss_pred             Cccc-------cccCCCccEEEEeccc
Q 029065          113 EDHI-------KAVAPPFDYIIGTDVV  132 (199)
Q Consensus       113 ~~~~-------~~~~~~fD~Ii~~~~~  132 (199)
                      .++.       ...-+..|++|-|.-+
T Consensus        98 ~eei~~~a~~Vk~e~G~V~ILVNNAGI  124 (300)
T KOG1201|consen   98 REEIYRLAKKVKKEVGDVDILVNNAGI  124 (300)
T ss_pred             HHHHHHHHHHHHHhcCCceEEEecccc
Confidence            7533       1223688999877555

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=94.87  E-value=0.007  Score=49.62  Aligned_cols=93  Identities=19%  Similarity=0.157  Sum_probs=58.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .+..++|+|||-|-....  .-..-+++.|++. .+.-+++.    +              .......|.   ...+...
T Consensus        45 ~gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~~ak~~----~--------------~~~~~~ad~---l~~p~~~  101 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLGGAKRS----G--------------GDNVCRADA---LKLPFRE  101 (293)
T ss_pred             CcceeeecccCCcccCcC--CCcceeeecchhhhhccccccC----C--------------Cceeehhhh---hcCCCCC
Confidence            488999999999832111  1233578888754 44333321    1              001222222   2334456


Q ss_pred             CCccEEEEeccccCCc---ChHHHHHHHHHhcCCCcEEEE
Q 029065          121 PPFDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~---~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      ..||.+++..+++|.+   ....+++.+.+.++|||.+.+
T Consensus       102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            7999999999998843   567788999999999997433

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=94.81  E-value=0.016  Score=50.08  Aligned_cols=47  Identities=32%  Similarity=0.429  Sum_probs=43.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhh
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS   88 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~   88 (199)
                      .|..|.|+.||.|..++.++..+++|++.|. +++++..+.|+..|..
T Consensus       249 ~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv  296 (495)
T KOG2078|consen  249 PGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKV  296 (495)
T ss_pred             CcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcccccc
Confidence            3678999999999999999999999999998 6799999999998865

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=94.77  E-value=0.16  Score=41.04  Aligned_cols=73  Identities=15%  Similarity=0.128  Sum_probs=48.1

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ..+|+|||||.=.+++.....  ++.|++.|++. +++....-+...+.             ..++...|....    .+
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-------------~~~~~v~Dl~~~----~~  168 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-------------PHDARVRDLLSD----PP  168 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--------------CEEEEEE-TTTS----HT
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-------------CcceeEeeeecc----CC
Confidence            569999999998777766654  46799999954 88888777666543             456666665432    23


Q ss_pred             CCCccEEEEeccc
Q 029065          120 APPFDYIIGTDVV  132 (199)
Q Consensus       120 ~~~fD~Ii~~~~~  132 (199)
                      ....|+.+.--++
T Consensus       169 ~~~~DlaLllK~l  181 (251)
T PF07091_consen  169 KEPADLALLLKTL  181 (251)
T ss_dssp             TSEESEEEEET-H
T ss_pred             CCCcchhhHHHHH
Confidence            5679998876444

>PRK13699 putative methylase; Provisional

Probab=94.61  E-value=0.097  Score=41.86  Aligned_cols=44  Identities=14%  Similarity=0.080  Sum_probs=37.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEW   85 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~   85 (199)
                      +|..|||-.||+|..++++.+.|-+++|+|++ +..+.+.+.+..
T Consensus       163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence            57799999999999888888989999999994 488888777654

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.55  E-value=0.028  Score=39.50  Aligned_cols=29  Identities=21%  Similarity=0.315  Sum_probs=26.8

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCeEEEeec
Q 029065           44 KRVIELGAGCGVAGFGMALLGCNVITTDQ   72 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~   72 (199)
                      ....|||||.|++--.|...|..-.|+|.
T Consensus        60 ~~FVDlGCGNGLLV~IL~~EGy~G~GiD~   88 (112)
T PF07757_consen   60 QGFVDLGCGNGLLVYILNSEGYPGWGIDA   88 (112)
T ss_pred             CceEEccCCchHHHHHHHhCCCCcccccc
Confidence            46999999999999999999999999995

; GO: 0008168 methyltransferase activity

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.15  E-value=0.11  Score=43.81  Aligned_cols=73  Identities=22%  Similarity=0.192  Sum_probs=47.1

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ..+++||.||.|-+++.+...|.+ +.++|+.+ +++.-+.|...                 -.+...|...........
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----------------~~~~~~di~~~~~~~~~~   65 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----------------GDIILGDIKELDGEALRK   65 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----------------CceeechHhhcChhhccc
Confidence            458999999999999999999988 77889854 66655555431                 122233333222111111


Q ss_pred             CCccEEEEeccc
Q 029065          121 PPFDYIIGTDVV  132 (199)
Q Consensus       121 ~~fD~Ii~~~~~  132 (199)
                      ..+|+|++.+|.
T Consensus        66 ~~~DvligGpPC   77 (328)
T COG0270          66 SDVDVLIGGPPC   77 (328)
T ss_pred             cCCCEEEeCCCC
Confidence            179999998776

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.91  E-value=0.23  Score=37.17  Aligned_cols=101  Identities=15%  Similarity=0.130  Sum_probs=62.8

Q ss_pred             CCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           38 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +...+| +.+|||+|-|.+-+.++++|.. -++++++. .+...+...-+.+.           .....+..-|+-..+ 
T Consensus        69 ~~n~~G-klvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-----------~k~trf~RkdlwK~d-  135 (199)
T KOG4058|consen   69 RGNPKG-KLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-----------AKSTRFRRKDLWKVD-  135 (199)
T ss_pred             cCCCCC-cEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-----------ccchhhhhhhhhhcc-
Confidence            333345 6899999999999999999965 99999977 76777776656553           223344433332111 


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                        ..+-++-+|+..+     +..+++..++..-+..+..++-+
T Consensus       136 --l~dy~~vviFgae-----s~m~dLe~KL~~E~p~nt~vvac  171 (199)
T KOG4058|consen  136 --LRDYRNVVIFGAE-----SVMPDLEDKLRTELPANTRVVAC  171 (199)
T ss_pred             --ccccceEEEeehH-----HHHhhhHHHHHhhCcCCCeEEEE
Confidence              1122344455444     45666777777667777665443

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=93.36  E-value=0.17  Score=42.46  Aligned_cols=38  Identities=24%  Similarity=0.307  Sum_probs=30.6

Q ss_pred             EEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHH
Q 029065           46 VIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNV   83 (199)
Q Consensus        46 VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~   83 (199)
                      |+||.||.|-+++.+...|.+ +.++|+.+ +++.-+.|.
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~   40 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF   40 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence            689999999999999999988 66789855 666666654

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.29  E-value=0.62  Score=39.10  Aligned_cols=94  Identities=19%  Similarity=0.192  Sum_probs=53.6

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHhh-CC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~~-g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+||=.|||. |..++.+|+. |+ +|+++|.+ +-++.+++    .+...           .+.....++..   ..
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~-----------vi~~~~~~~~~---~~  230 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADK-----------LVNPQNDDLDH---YK  230 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcE-----------EecCCcccHHH---Hh
Confidence            578999999875 7777777754 77 58899974 45555543    12100           01111111110   01


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ...+.+|+|+-.-      --...+....++++++|.+++..
T Consensus       231 ~~~g~~D~vid~~------G~~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        231 AEKGYFDVSFEVS------GHPSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             ccCCCCCEEEECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence            1123589887542      22346677778899999876654

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=93.00  E-value=0.06  Score=44.65  Aligned_cols=46  Identities=26%  Similarity=0.327  Sum_probs=40.7

Q ss_pred             CCcEEEeCCCcChHHH-HHHhhCCe-EEEeech-hHHHHHHHHHHHhhh
Q 029065           43 GKRVIELGAGCGVAGF-GMALLGCN-VITTDQI-EVLPLLKRNVEWNTS   88 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl-~la~~g~~-v~~~D~~-~~l~~a~~~~~~~~~   88 (199)
                      +..|.||-+|.|..++ ++-+.||+ |++.|.+ .+++..+++++.|+.
T Consensus       195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V  243 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV  243 (351)
T ss_pred             cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch
Confidence            5789999999999999 88899998 9999995 599999999998864

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=92.90  E-value=0.95  Score=40.40  Aligned_cols=107  Identities=15%  Similarity=0.047  Sum_probs=65.9

Q ss_pred             CCcEEEeCCCcChHHHHHHh-hC-----CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           43 GKRVIELGAGCGVAGFGMAL-LG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~-~g-----~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ..+|.|--||+|.+-+.++. .+     ..+.|.+. +.....|+-|.-.++...           .+.....|-.....
T Consensus       187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----------~~~i~~~dtl~~~~  255 (489)
T COG0286         187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----------DANIRHGDTLSNPK  255 (489)
T ss_pred             CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----------cccccccccccCCc
Confidence            44999999999854443332 22     33899998 458899999998887421           11111111110000


Q ss_pred             c--cccCCCccEEEEeccccC---C----------------------cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          116 I--KAVAPPFDYIIGTDVVYA---E----------------------HLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       116 ~--~~~~~~fD~Ii~~~~~~~---~----------------------~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      .  ....+.||+|++++|+..   .                      .....+++.+...|+|+|.+-|..+
T Consensus       256 ~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~  327 (489)
T COG0286         256 HDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP  327 (489)
T ss_pred             ccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence            0  113467999999999851   0                      0136788888999999876555544

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=92.83  E-value=0.42  Score=39.97  Aligned_cols=44  Identities=14%  Similarity=0.092  Sum_probs=36.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeec-hhHHHHHHHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW   85 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~-~~~l~~a~~~~~~   85 (199)
                      +|..++|.-+|.|-.+..++..  ..+|+++|. +.++..+++.+..
T Consensus        20 ~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~   66 (305)
T TIGR00006        20 PDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD   66 (305)
T ss_pred             CCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence            4668999999999999888865  367999998 5599999887654

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.81  E-value=2.2  Score=33.41  Aligned_cols=78  Identities=24%  Similarity=0.262  Sum_probs=44.2

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++++||=.|++.|+   +...++..|++|++++.++ .++.+...+...              .++.+...|+.+....
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~~~   68 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--------------GNIHYVVGDVSSTESA   68 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCeEEEECCCCCHHHH
Confidence            457899999997553   3333445689999998743 333332222211              1466777888755422


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ..-+..|.++.+...
T Consensus        69 ~~~~~~~~~~~~~id~ii~~ag~   91 (238)
T PRK05786         69 RNVIEKAAKVLNAIDGLVVTVGG   91 (238)
T ss_pred             HHHHHHHHHHhCCCCEEEEcCCC
Confidence            1       011356887766543

>PRK11524 putative methyltransferase; Provisional

Probab=92.55  E-value=0.18  Score=41.62  Aligned_cols=57  Identities=12%  Similarity=0.024  Sum_probs=37.5

Q ss_pred             EEEEeeeCCCccccccCCCccEEEEeccccCCc----------------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          104 QAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH----------------LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       104 ~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~----------------~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .+.+.|...... ...+++||+|+++++++...                ....++..+.++|+|+|.+++....
T Consensus        10 ~i~~gD~~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~   82 (284)
T PRK11524         10 TIIHGDALTELK-KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST   82 (284)
T ss_pred             EEEeccHHHHHH-hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            455555443211 12356899999999875311                1257889999999999999886443

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.48  E-value=0.71  Score=38.91  Aligned_cols=91  Identities=18%  Similarity=0.199  Sum_probs=51.9

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeec---hh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           42 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ---IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~---~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ++.+||=+|+|. |..++.+|+ .|++|++++.   ++ -++.++    ..+.               +.  .+....+.
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~----~~Ga---------------~~--v~~~~~~~  230 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE----ELGA---------------TY--VNSSKTPV  230 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH----HcCC---------------EE--ecCCccch
Confidence            578999999875 777776665 4888999985   22 333332    2221               11  11111100


Q ss_pred             c-cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 ~-~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      . ....+.+|+|+-.-      .-...+....+.++++|.+.+..
T Consensus       231 ~~~~~~~~~d~vid~~------g~~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         231 AEVKLVGEFDLIIEAT------GVPPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             hhhhhcCCCCEEEECc------CCHHHHHHHHHHccCCcEEEEEe
Confidence            0 01124688887642      12346777788899999876543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.39  E-value=0.86  Score=40.87  Aligned_cols=98  Identities=27%  Similarity=0.358  Sum_probs=58.1

Q ss_pred             CCCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC----
Q 029065           40 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN----  112 (199)
Q Consensus        40 ~~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~----  112 (199)
                      ...+.+|+=+|||. |+.++.+++ +|+.|+++|.. +.++.++. +   +.               ++...+..+    
T Consensus       161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-l---Ga---------------~~v~v~~~e~g~~  221 (511)
T TIGR00561       161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M---GA---------------EFLELDFKEEGGS  221 (511)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c---CC---------------eEEeccccccccc
Confidence            35578999999996 787776665 59999999984 46555543 1   21               111111100    


Q ss_pred             ---------Cc-c------ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEE
Q 029065          113 ---------ED-H------IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  156 (199)
Q Consensus       113 ---------~~-~------~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~  156 (199)
                               .+ .      ....-..+|+|+..-.+-....+.-+.+...+.++||+.++
T Consensus       222 ~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       222 GDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             cccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence                     00 0      01112469999887655454454456677777788776543

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=92.33  E-value=0.75  Score=36.24  Aligned_cols=105  Identities=18%  Similarity=0.151  Sum_probs=52.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh------CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~------g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      +...|+|+|.-.|--.++.|..      .++|+++|+. ....  +..++.+-           ..++|++.++|..+.+
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp-----------~~~rI~~i~Gds~d~~   98 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHP-----------MSPRITFIQGDSIDPE   98 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG---------------TTEEEEES-SSSTH
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhcc-----------ccCceEEEECCCCCHH
Confidence            6789999999877555555532      3569999972 2111  11111111           1358999998876664


Q ss_pred             cccc---cC--CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          115 HIKA---VA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       115 ~~~~---~~--~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ....   ..  ....+|+ -|.=+..+.....++....++++|+.+++.+.
T Consensus        99 ~~~~v~~~~~~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt  148 (206)
T PF04989_consen   99 IVDQVRELASPPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDT  148 (206)
T ss_dssp             HHHTSGSS----SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSH
T ss_pred             HHHHHHHhhccCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEec
Confidence            3221   11  2233444 35555667788888889999999998777653

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=92.17  E-value=3.6  Score=33.72  Aligned_cols=85  Identities=19%  Similarity=0.210  Sum_probs=58.0

Q ss_pred             CCCCCCCcEEEeCCCcC---hHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCG---VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G---~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      +..+.++.+|--|...|   .++..+++.|++|+.++. .+.++.+...+...+..          ..++....+|..+.
T Consensus         3 ~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Dv~~~   72 (270)
T KOG0725|consen    3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYT----------GGKVLAIVCDVSKE   72 (270)
T ss_pred             CccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC----------CCeeEEEECcCCCH
Confidence            45678999999999776   467888899999999997 44666665555444321          34567777787655


Q ss_pred             ccc--------cccCCCccEEEEeccc
Q 029065          114 DHI--------KAVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~--------~~~~~~fD~Ii~~~~~  132 (199)
                      +..        ....++.|+++.+.-.
T Consensus        73 ~~~~~l~~~~~~~~~GkidiLvnnag~   99 (270)
T KOG0725|consen   73 VDVEKLVEFAVEKFFGKIDILVNNAGA   99 (270)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEcCCc
Confidence            321        1224689999877544

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.09  E-value=0.95  Score=39.16  Aligned_cols=75  Identities=23%  Similarity=0.385  Sum_probs=48.8

Q ss_pred             CcEEEeCCCc-Ch-HHHHHHhhC-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           44 KRVIELGAGC-GV-AGFGMALLG-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        44 ~~VLdlGcG~-G~-~sl~la~~g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++||=||||. |. .+.-+|..+ .+|+..|.+ +.++.+....                ..+++...+|..+...+...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----------------~~~v~~~~vD~~d~~al~~l   65 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----------------GGKVEALQVDAADVDALVAL   65 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----------------cccceeEEecccChHHHHHH
Confidence            5799999964 64 334445666 679999974 4444443332                22678888888777555444


Q ss_pred             CCCccEEEEeccccC
Q 029065          120 APPFDYIIGTDVVYA  134 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~  134 (199)
                      -..+|+||..-+.+.
T Consensus        66 i~~~d~VIn~~p~~~   80 (389)
T COG1748          66 IKDFDLVINAAPPFV   80 (389)
T ss_pred             HhcCCEEEEeCCchh
Confidence            556799988766544

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=91.63  E-value=0.069  Score=43.62  Aligned_cols=108  Identities=23%  Similarity=0.109  Sum_probs=60.8

Q ss_pred             cCccCCCCCCCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           33 KGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        33 ~~~~~~~~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      .+..+|....++++.++|||.+..++.+++....|...|. ..+.-....+...+...   ..     ...-+.-..+|.
T Consensus        81 ~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~~~~l~~~~~~~~~~---~~-----~~~~~~~~~~~~  152 (262)
T KOG2497|consen   81 DLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCAGLLLEEIILLSRDL---SL-----EVRDSAPELNQA  152 (262)
T ss_pred             HHhhCcccccccchHhhccCHHHHHHHHHhcccceecCCccCcHHHHHHHHHhccccc---cc-----cccccchhHHHH
Confidence            3455777788999999999999988777776555555553 22222222222222110   00     011112222221


Q ss_pred             CCcccc-ccCCCccEEEEeccccCCcChHHHHHHHHHhc
Q 029065          112 NEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS  149 (199)
Q Consensus       112 ~~~~~~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l  149 (199)
                      .....+ .....+|+|+++++.|. .....++.....+|
T Consensus       153 ~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL  190 (262)
T KOG2497|consen  153 FLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL  190 (262)
T ss_pred             HHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence            111111 11234999999999999 88888888887764

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=91.56  E-value=0.082  Score=37.33  Aligned_cols=40  Identities=20%  Similarity=0.328  Sum_probs=30.4

Q ss_pred             CccEEEEeccccC------CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          122 PFDYIIGTDVVYA------EHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       122 ~fD~Ii~~~~~~~------~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +||+|+|-.+.-+      ++-+..+++.+..+|+|||.+++..+.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~   46 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQP   46 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCC
Confidence            4899998877633      567899999999999999999998765

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=91.38  E-value=6.1  Score=31.30  Aligned_cols=82  Identities=17%  Similarity=0.241  Sum_probs=50.1

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ...+++++||=.|++.|+   +...++..|++|++++.+ +.++.+...+...+             .++.+..+|+.+.
T Consensus         6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~   72 (256)
T PRK06124          6 RFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG-------------GAAEALAFDIADE   72 (256)
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEccCCCH
Confidence            445789999999986654   334455669999999873 34444444343322             2467777888765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ....       ..-++.|+++.+...
T Consensus        73 ~~~~~~~~~~~~~~~~id~vi~~ag~   98 (256)
T PRK06124         73 EAVAAAFARIDAEHGRLDILVNNVGA   98 (256)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            4221       112468998876543

>PRK10458 DNA cytosine methylase; Provisional

Probab=91.14  E-value=0.64  Score=41.23  Aligned_cols=40  Identities=30%  Similarity=0.349  Sum_probs=31.7

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHH
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRN   82 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~   82 (199)
                      ..+++||.||.|-+++.+...|.+ |.++|+.. +.+.-+.|
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N  129 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKAN  129 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHH
Confidence            459999999999888888888887 67779855 65555555

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=91.00  E-value=0.58  Score=40.05  Aligned_cols=104  Identities=20%  Similarity=0.117  Sum_probs=57.7

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHhh-CC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEee-eCCCcc
Q 029065           41 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD-WGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~~-g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-~~~~~~  115 (199)
                      .++.+||.+|||+ |...+.+|+. |. +|+++|.+ +.++.+++..   +            ...+.....+ +...-.
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~------------~~vi~~~~~~~~~~~l~  247 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---G------------AETINFEEVDDVVEALR  247 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---C------------cEEEcCCcchHHHHHHH
Confidence            3578999999987 8777777755 76 49999874 4666655431   1            0011111110 100000


Q ss_pred             ccccCCCccEEEEeccc---------------cCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVV---------------YAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~---------------~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .......+|+|+-.-..               ....+....+..+.+.++++|.+++..
T Consensus       248 ~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         248 ELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             HHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence            00112368988764210               011223567788888999999876654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=90.97  E-value=0.25  Score=41.50  Aligned_cols=78  Identities=19%  Similarity=0.257  Sum_probs=48.7

Q ss_pred             EEeCCCcC-hHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC---cccc-cc
Q 029065           47 IELGAGCG-VAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE---DHIK-AV  119 (199)
Q Consensus        47 LdlGcG~G-~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~---~~~~-~~  119 (199)
                      +|||.|.- +..+.-++. +...+++|+.+ -++.|..|+..|+.           .+.+.+++.+-...   +... ..
T Consensus       107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~l-----------ss~ikvV~~~~~ktll~d~~~~~~  175 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNL-----------SSLIKVVKVEPQKTLLMDALKEES  175 (419)
T ss_pred             eeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccccc-----------ccceeeEEecchhhcchhhhccCc
Confidence            68888763 333333333 44599999966 78899999988864           34555555432111   1111 11


Q ss_pred             CCCccEEEEeccccCC
Q 029065          120 APPFDYIIGTDVVYAE  135 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~  135 (199)
                      +..||..++++++|..
T Consensus       176 e~~ydFcMcNPPFfe~  191 (419)
T KOG2912|consen  176 EIIYDFCMCNPPFFEN  191 (419)
T ss_pred             cceeeEEecCCchhhc
Confidence            3469999999999754

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=90.66  E-value=0.35  Score=36.66  Aligned_cols=120  Identities=13%  Similarity=0.140  Sum_probs=66.5

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCe-EEEeechh--HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCN-VITTDQIE--VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      |++++=+|+..--.=..+...||. |+.++++.  +.+..+..+.                   .+...|+...  ....
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~s-------------------si~p~df~~~--~~~y   60 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLS-------------------SILPVDFAKN--WQKY   60 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccc-------------------cccHHHHHHH--HHHh
Confidence            678888888865444444455765 88888654  1111111110                   0001111100  0112


Q ss_pred             CCCccEEEEeccccC-----------CcChHHHHHHHHHhcCCCcEEEEEEEecChhH--------HHHHHHHHHhCCeE
Q 029065          120 APPFDYIIGTDVVYA-----------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSV--------HEQMLQMWKSNFNV  180 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~-----------~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~--------~~~~~~~~~~~~~v  180 (199)
                      .++||.+.+-..+-|           +.-....+..++++||+||.++++.|...+..        -...+.++-.+|+.
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe~  140 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFEW  140 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcEE
Confidence            457888777666632           12345667788899999999999998765321        11234556677776


Q ss_pred             EEe
Q 029065          181 KLV  183 (199)
Q Consensus       181 ~~~  183 (199)
                      ...
T Consensus       141 i~t  143 (177)
T PF03269_consen  141 IDT  143 (177)
T ss_pred             Eee
Confidence            444

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=90.22  E-value=0.79  Score=39.52  Aligned_cols=113  Identities=12%  Similarity=0.119  Sum_probs=70.0

Q ss_pred             CCCcEEEeCCCcChHHHHHH-hhCCe-EEEeec----hh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           42 KGKRVIELGAGCGVAGFGMA-LLGCN-VITTDQ----IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la-~~g~~-v~~~D~----~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ++....|+|+|.|-+-.+.| ..+++ =+|+++    ++ +..+...+.......       +.....++..+.++.+..
T Consensus       192 ~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~f-------Gk~~~~~~~i~gsf~~~~  264 (419)
T KOG3924|consen  192 PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHF-------GKKPNKIETIHGSFLDPK  264 (419)
T ss_pred             CCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHh-------CCCcCceeecccccCCHH
Confidence            35688999999986555555 44443 555543    22 322332222222111       111335677777776655


Q ss_pred             cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          115 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .........++|+++..-+.+....++- .+.+-+++|.+++=..+.+
T Consensus       265 ~v~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~L~  311 (419)
T KOG3924|consen  265 RVTEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIISSKPLV  311 (419)
T ss_pred             HHHHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEecccccc
Confidence            4445567899999999988877766666 7788889999877666543

>PRK06701 short chain dehydrogenase; Provisional

Probab=90.18  E-value=3.8  Score=33.58  Aligned_cols=80  Identities=21%  Similarity=0.167  Sum_probs=47.2

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech--hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI--EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ..++++++|=.|++.|+   ++..+++.|++|++++..  ..++.....+...             ..++.+..+|+.+.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~  108 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE-------------GVKCLLIPGDVSDE  108 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc-------------CCeEEEEEccCCCH
Confidence            35678899999987664   455556679999888763  2233322222222             12566777887655


Q ss_pred             cccc-------ccCCCccEEEEecc
Q 029065          114 DHIK-------AVAPPFDYIIGTDV  131 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~  131 (199)
                      ....       ...+..|++|.+..
T Consensus       109 ~~~~~~~~~i~~~~~~iD~lI~~Ag  133 (290)
T PRK06701        109 AFCKDAVEETVRELGRLDILVNNAA  133 (290)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCc
Confidence            4221       11246898886644

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=90.15  E-value=1.8  Score=35.75  Aligned_cols=84  Identities=14%  Similarity=0.012  Sum_probs=49.9

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHh-hCCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~-~g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+||=+|||. |+.++.+|+ .|++ |+++|.. +-++.+...    .              .     .+....    
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~--------------~-----i~~~~~----  196 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E--------------V-----LDPEKD----  196 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c--------------c-----cChhhc----
Confidence            567899999875 877777775 4887 6667763 333333211    0              0     110000    


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                       ....+|+|+-+-      --...+....++++++|.+.+..
T Consensus       197 -~~~g~Dvvid~~------G~~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       197 -PRRDYRAIYDAS------GDPSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             -cCCCCCEEEECC------CCHHHHHHHHHhhhcCcEEEEEe
Confidence             124688887542      22346677778899999876544

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=90.00  E-value=1.9  Score=35.16  Aligned_cols=108  Identities=21%  Similarity=0.254  Sum_probs=67.7

Q ss_pred             CcEEEeCCCcChHHHHHHhh-CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-----
Q 029065           44 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-----  117 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----  117 (199)
                      ..|+.||||-=.-..-+... +.+++=+|.+++++.-++.+..++..         ...+..++..|+. .....     
T Consensus        83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~---------~~~~~~~v~~Dl~-~~w~~~L~~~  152 (260)
T TIGR00027        83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAE---------PPAHRRAVPVDLR-QDWPAALAAA  152 (260)
T ss_pred             cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCC---------CCCceEEeccCch-hhHHHHHHhC
Confidence            47999999975444444322 45677778888877777766654321         1345667777765 21110     


Q ss_pred             -ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 -AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 -~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                       .....--++++-+++++  .+....+++.+.....||+.+++....
T Consensus       153 gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       153 GFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             CCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence             11123446666666644  557888999999988888888776543

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=89.87  E-value=0.57  Score=37.24  Aligned_cols=122  Identities=11%  Similarity=0.021  Sum_probs=62.6

Q ss_pred             CCCcEEEeCCCcCh-HHHHHHhhC---CeEEEeech-hHHHHHHHHHHHh---hhccc----------cCCC--------
Q 029065           42 KGKRVIELGAGCGV-AGFGMALLG---CNVITTDQI-EVLPLLKRNVEWN---TSRIS----------QMNP--------   95 (199)
Q Consensus        42 ~~~~VLdlGcG~G~-~sl~la~~g---~~v~~~D~~-~~l~~a~~~~~~~---~~~~~----------~~~~--------   95 (199)
                      .+.++.|=-||.|- +++....++   ..|+++|++ ++++.|++|+.+.   |+.-+          +..|        
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            34699999999994 444333333   359999995 4999999998643   11000          0000        


Q ss_pred             ---------CCCCCCcEEEEEeeeCCCcccc--ccCCCccEEEEeccccCCcC---------hHHHHHHHHHhcCCCcEE
Q 029065           96 ---------GSDLLGSIQAVELDWGNEDHIK--AVAPPFDYIIGTDVVYAEHL---------LEPLLQTIFALSGPKTTI  155 (199)
Q Consensus        96 ---------~~~~~~~i~~~~~d~~~~~~~~--~~~~~fD~Ii~~~~~~~~~~---------~~~~l~~l~~~l~~~g~i  155 (199)
                               .........+...|+.+.....  ......|+||..=++-....         ...++..+...|-+.+++
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV  210 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV  210 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence                     0111223556666655432211  11233699988655433333         556899999999666666


Q ss_pred             EEEEEecC
Q 029065          156 LLGYEIRS  163 (199)
Q Consensus       156 ~i~~~~~~  163 (199)
                      .+++..++
T Consensus       211 ~v~~k~~K  218 (246)
T PF11599_consen  211 AVSDKGRK  218 (246)
T ss_dssp             EEEESSSS
T ss_pred             EEecCCcc
Confidence            66655543

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=89.61  E-value=1  Score=34.94  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=34.1

Q ss_pred             ccEEEEeccccCCcC-------------------hHHHHHHHHHhcCCCcEEEEEEEecChh--HHHHHHHHHHhCCeE
Q 029065          123 FDYIIGTDVVYAEHL-------------------LEPLLQTIFALSGPKTTILLGYEIRSTS--VHEQMLQMWKSNFNV  180 (199)
Q Consensus       123 fD~Ii~~~~~~~~~~-------------------~~~~l~~l~~~l~~~g~i~i~~~~~~~~--~~~~~~~~~~~~~~v  180 (199)
                      .|+|+.++|++....                   ...++..+.++|+|+|.+++....+...  ......+.++ +|.+
T Consensus         1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g-~~~~   78 (231)
T PF01555_consen    1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG-GFFL   78 (231)
T ss_dssp             EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT-T-EE
T ss_pred             CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh-hhhe
Confidence            377888777654333                   5777888889999999988877654433  3444445555 4544

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK07806 short chain dehydrogenase; Provisional

Probab=88.64  E-value=9.2  Score=30.04  Aligned_cols=105  Identities=17%  Similarity=0.171  Sum_probs=55.3

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech--hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI--EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ++++++|=.|+..|+   +...++..|.+|++++.+  ..++.....+...             ..++.+..+|+.+.+.
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~   70 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA-------------GGRASAVGADLTDEES   70 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc-------------CCceEEEEcCCCCHHH
Confidence            567899999975543   333344568898888652  2333332222221             1245667778766543


Q ss_pred             cc-------ccCCCccEEEEeccccCC-------------cChHHHHHHHHHhcCCCcEE-EEE
Q 029065          116 IK-------AVAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTI-LLG  158 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~~~-------------~~~~~~l~~l~~~l~~~g~i-~i~  158 (199)
                      ..       ..-+..|+++.+......             .....+++.+...++.+|.+ +++
T Consensus        71 ~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is  134 (248)
T PRK07806         71 VAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT  134 (248)
T ss_pred             HHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence            21       011468887765432110             01335666666666555554 443

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=88.56  E-value=0.12  Score=36.87  Aligned_cols=84  Identities=26%  Similarity=0.302  Sum_probs=51.9

Q ss_pred             CcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc---cc-c-ccCCCcc
Q 029065           52 GCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI-K-AVAPPFD  124 (199)
Q Consensus        52 G~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~-~-~~~~~fD  124 (199)
                      |.|+.++.+|+. |++|+++|.++ -++.+++    .+..                ..++..+.+   .. . .....+|
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga~----------------~~~~~~~~~~~~~i~~~~~~~~~d   60 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGAD----------------HVIDYSDDDFVEQIRELTGGRGVD   60 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTES----------------EEEETTTSSHHHHHHHHTTTSSEE
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hccc----------------ccccccccccccccccccccccce
Confidence            457778888864 88899999854 5555543    2211                113333221   11 1 1124799


Q ss_pred             EEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          125 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       125 ~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +|+-.-      .....++...++++++|.+.+..-.
T Consensus        61 ~vid~~------g~~~~~~~~~~~l~~~G~~v~vg~~   91 (130)
T PF00107_consen   61 VVIDCV------GSGDTLQEAIKLLRPGGRIVVVGVY   91 (130)
T ss_dssp             EEEESS------SSHHHHHHHHHHEEEEEEEEEESST
T ss_pred             EEEEec------CcHHHHHHHHHHhccCCEEEEEEcc
Confidence            988652      2367888899999999998776544

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK08324 short chain dehydrogenase; Validated

Probab=88.49  E-value=4  Score=37.89  Aligned_cols=81  Identities=20%  Similarity=0.223  Sum_probs=47.4

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      +...+|++||=.|++.|+   +...++..|++|+++|.+. .++.+...+...              ..+.+..+|..+.
T Consensus       417 ~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--------------~~v~~v~~Dvtd~  482 (681)
T PRK08324        417 PKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--------------DRALGVACDVTDE  482 (681)
T ss_pred             CcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--------------CcEEEEEecCCCH
Confidence            344578899999875442   3344445699999999743 433333222111              2566777787655


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ....       ...+++|+|+.+..+
T Consensus       483 ~~v~~~~~~~~~~~g~iDvvI~~AG~  508 (681)
T PRK08324        483 AAVQAAFEEAALAFGGVDIVVSNAGI  508 (681)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            4221       112468999877554

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=88.26  E-value=1.1  Score=38.53  Aligned_cols=31  Identities=26%  Similarity=0.367  Sum_probs=27.4

Q ss_pred             CcEEEeCCCcChHHHHHHhh-CCeEEEeechh
Q 029065           44 KRVIELGAGCGVAGFGMALL-GCNVITTDQIE   74 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~   74 (199)
                      ..|.|+|+|.|-++.+++.. |..|.++|.+.
T Consensus       155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq  186 (476)
T KOG2651|consen  155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ  186 (476)
T ss_pred             CeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence            58999999999999999965 77899999865

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=88.05  E-value=1.2  Score=37.71  Aligned_cols=39  Identities=31%  Similarity=0.427  Sum_probs=27.3

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeechh-HHHHH
Q 029065           41 LKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQIE-VLPLL   79 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~~~-~l~~a   79 (199)
                      -++.+||=.|||. |...+.+|+. |++ |+++|.++ -++.+
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~  217 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA  217 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            3578899999865 6667777754 875 99998743 44444

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=87.81  E-value=6.1  Score=32.20  Aligned_cols=116  Identities=9%  Similarity=0.013  Sum_probs=80.8

Q ss_pred             EEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cccccCCCcc
Q 029065           47 IELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFD  124 (199)
Q Consensus        47 LdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~fD  124 (199)
                      |..=||+-.++..+.+..-+++++++ ++=....+.++..              ..++.+...|--... ..-++.++=-
T Consensus        93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~--------------d~~vrv~~~DG~~~l~a~LPP~erRg  158 (279)
T COG2961          93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAG--------------DRRVRVLRGDGFLALKAHLPPKERRG  158 (279)
T ss_pred             cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCC--------------CcceEEEecCcHHHHhhhCCCCCcce
Confidence            67778887777777776778999998 5544555666542              236677665532111 1112345677


Q ss_pred             EEEEeccccCCcChHHHHHHHHHhcC--CCcEEEEEEEecChhHHHHHHHHHHh
Q 029065          125 YIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVHEQMLQMWKS  176 (199)
Q Consensus       125 ~Ii~~~~~~~~~~~~~~l~~l~~~l~--~~g~i~i~~~~~~~~~~~~~~~~~~~  176 (199)
                      +|+..+++-...+++.+++.+...++  ++|+..|=+|.........|.+.+..
T Consensus       159 lVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~  212 (279)
T COG2961         159 LVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEA  212 (279)
T ss_pred             EEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhh
Confidence            88888888778899999999999987  68887777887766667778777754

>PRK05867 short chain dehydrogenase; Provisional

Probab=87.70  E-value=3  Score=33.14  Aligned_cols=79  Identities=20%  Similarity=0.282  Sum_probs=48.9

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   ++..++..|++|++++.+ +.++.....+...             ..++....+|+.+....
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~   73 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS-------------GGKVVPVCCDVSQHQQV   73 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-------------CCeEEEEEccCCCHHHH
Confidence            578999999987764   455556679999999874 3444443333322             12456677777655321


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ..-++.|+++.+..+
T Consensus        74 ~~~~~~~~~~~g~id~lv~~ag~   96 (253)
T PRK05867         74 TSMLDQVTAELGGIDIAVCNAGI   96 (253)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCC
Confidence            1       112578999877544

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=87.69  E-value=3.4  Score=33.08  Aligned_cols=83  Identities=18%  Similarity=0.124  Sum_probs=51.5

Q ss_pred             CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      +...++++++|=.|++.|+   +...++..|++|+.++.+ +.++.+...+...             ..++.+..+|+.+
T Consensus         4 ~~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~   70 (265)
T PRK07097          4 NLFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL-------------GIEAHGYVCDVTD   70 (265)
T ss_pred             cccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCC
Confidence            3445678999999998764   445556679999988863 3444444433322             1256777788865


Q ss_pred             Ccccc-------ccCCCccEEEEeccc
Q 029065          113 EDHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       113 ~~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      .....       ..-++.|+++.+..+
T Consensus        71 ~~~~~~~~~~~~~~~~~id~li~~ag~   97 (265)
T PRK07097         71 EDGVQAMVSQIEKEVGVIDILVNNAGI   97 (265)
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence            54221       112568999877654

>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=87.47  E-value=0.86  Score=37.31  Aligned_cols=35  Identities=31%  Similarity=0.406  Sum_probs=31.8

Q ss_pred             CCCCCCCcEEEeCCCcChHHHHHHhhCCeEEEeec
Q 029065           38 PSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ   72 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~   72 (199)
                      ..+.+|+.+.||.+|||++|..+-+.|..|++.|+
T Consensus        23 k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDl   57 (330)
T COG3392          23 KEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDL   57 (330)
T ss_pred             hcccCCCeeeeeccCccHHHHHHHHhcchhhhchH
Confidence            35567889999999999999999999999999997

>PRK08265 short chain dehydrogenase; Provisional

Probab=87.47  E-value=9.5  Score=30.46  Aligned_cols=76  Identities=16%  Similarity=0.138  Sum_probs=46.1

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   +...++..|++|+++|.+. .++.....+                ..++.+..+|+.+....
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~Dl~~~~~~   67 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL----------------GERARFIATDITDDAAI   67 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------------CCeeEEEEecCCCHHHH
Confidence            567899999986653   4555566799999998743 222222111                12466777888765422


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ..-++.|+++.+...
T Consensus        68 ~~~~~~~~~~~g~id~lv~~ag~   90 (261)
T PRK08265         68 ERAVATVVARFGRVDILVNLACT   90 (261)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCC
Confidence            1       112468998877544

>PRK08339 short chain dehydrogenase; Provisional

Probab=87.44  E-value=3  Score=33.59  Aligned_cols=79  Identities=15%  Similarity=0.148  Sum_probs=48.9

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   ++..++..|++|++++.+ +-++.+...+....            ..++.+..+|..+....
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~~~i   73 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES------------NVDVSYIVADLTKREDL   73 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHHH
Confidence            578999999987764   555666679999999873 34444444332211            12567777888766422


Q ss_pred             c------ccCCCccEEEEecc
Q 029065          117 K------AVAPPFDYIIGTDV  131 (199)
Q Consensus       117 ~------~~~~~fD~Ii~~~~  131 (199)
                      .      ..-++.|+++.+.-
T Consensus        74 ~~~~~~~~~~g~iD~lv~nag   94 (263)
T PRK08339         74 ERTVKELKNIGEPDIFFFSTG   94 (263)
T ss_pred             HHHHHHHHhhCCCcEEEECCC
Confidence            1      01256898886643

>PRK07109 short chain dehydrogenase; Provisional

Probab=87.30  E-value=12  Score=31.42  Aligned_cols=79  Identities=23%  Similarity=0.281  Sum_probs=49.0

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++++||=.|++.|+   +...++..|++|++++.+ +.++.....+...+             .++.+...|..+.+..
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g-------------~~~~~v~~Dv~d~~~v   72 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG-------------GEALAVVADVADAEAV   72 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------------CcEEEEEecCCCHHHH
Confidence            567889999986664   444556679999999873 35554444443322             2566777887665422


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ..-++.|++|.+...
T Consensus        73 ~~~~~~~~~~~g~iD~lInnAg~   95 (334)
T PRK07109         73 QAAADRAEEELGPIDTWVNNAMV   95 (334)
T ss_pred             HHHHHHHHHHCCCCCEEEECCCc
Confidence            1       112578998876543

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=87.24  E-value=1.5  Score=36.16  Aligned_cols=95  Identities=21%  Similarity=0.284  Sum_probs=52.1

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.+||-.|+|. |...+.+|+ .|.+|++++.++ ..+.+++    .+..           ..+.....++... ....
T Consensus       165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~~-----------~~~~~~~~~~~~~-~~~~  228 (338)
T cd08254         165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGAD-----------EVLNSLDDSPKDK-KAAG  228 (338)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC-----------EEEcCCCcCHHHH-HHHh
Confidence            466888888763 666666665 588899998743 5454433    1210           0000000000000 0011


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      ..+.+|+++.+-      .....+....+.|+++|.++..
T Consensus       229 ~~~~~D~vid~~------g~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         229 LGGGFDVIFDFV------GTQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             cCCCceEEEECC------CCHHHHHHHHHHhhcCCEEEEE
Confidence            235689887531      1245677788999999987654

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=87.11  E-value=6.1  Score=32.30  Aligned_cols=110  Identities=15%  Similarity=0.092  Sum_probs=65.9

Q ss_pred             CCcEEEeCCCcChHHHHH----HhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           43 GKRVIELGAGCGVAGFGM----ALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~l----a~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +...+|||+|+..=+..+    +..|  .+++-+|+++ +++...+.+...-..           =.+.....|+.....
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-----------l~v~~l~~~~~~~La  147 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-----------LEVNALCGDYELALA  147 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-----------CeEeehhhhHHHHHh
Confidence            579999999987544333    3334  3699999966 777666655544211           134444555533322


Q ss_pred             ccccCCCccEEEEecccc--CCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          116 IKAVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~--~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      ..+..++-=.++...++-  .+.....++..+...++||-.+++.--.++
T Consensus       148 ~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k  197 (321)
T COG4301         148 ELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK  197 (321)
T ss_pred             cccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence            222112222233333332  366788999999999999998888765544

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=87.05  E-value=8.1  Score=32.26  Aligned_cols=87  Identities=16%  Similarity=0.023  Sum_probs=50.7

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +|.+||=.|+|. |...+.+|+ .|++|++++.++ -++.+++    .+..            .+    .+....     
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~------------~v----i~~~~~-----  219 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA------------SA----GGAYDT-----  219 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc------------ee----cccccc-----
Confidence            578999999864 656666664 488899998643 4444433    2211            11    111100     


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..+.+|+++..+..      ...+....+.++++|.+.+..
T Consensus       220 ~~~~~d~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       220 PPEPLDAAILFAPA------GGLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             CcccceEEEECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence            12357876654321      246777778899999876644

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK06139 short chain dehydrogenase; Provisional

Probab=87.00  E-value=2.9  Score=35.19  Aligned_cols=79  Identities=20%  Similarity=0.259  Sum_probs=49.6

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      +++++||=.|++.|+   +...++..|++|++++.+ +.++.....+...+             ..+.+...|+.+.+..
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~d~~~v   71 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG-------------AEVLVVPTDVTDADQV   71 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHHH
Confidence            567899999986664   445556679999999873 35555444443332             2456677788665422


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ...+++|++|.+..+
T Consensus        72 ~~~~~~~~~~~g~iD~lVnnAG~   94 (330)
T PRK06139         72 KALATQAASFGGRIDVWVNNVGV   94 (330)
T ss_pred             HHHHHHHHHhcCCCCEEEECCCc
Confidence            1       112578999877543

>PRK13699 putative methylase; Provisional

Probab=86.98  E-value=2.5  Score=33.71  Aligned_cols=59  Identities=14%  Similarity=0.352  Sum_probs=37.5

Q ss_pred             cCCCccEEEEeccccC------C---------cChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeE
Q 029065          119 VAPPFDYIIGTDVVYA------E---------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNV  180 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~------~---------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v  180 (199)
                      .++++|+|+.++|+.-      .         +-...++..+.++|+|||.+++-...+..   ..+...+ ..+|.+
T Consensus        17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~---~~~~~al~~~GF~l   91 (227)
T PRK13699         17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRV---DRFMAAWKNAGFSV   91 (227)
T ss_pred             CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccH---HHHHHHHHHCCCEE
Confidence            3678999999988751      0         11356778889999999987764333222   2344444 346755

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=86.80  E-value=3.8  Score=33.30  Aligned_cols=95  Identities=18%  Similarity=0.163  Sum_probs=51.3

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+||=+|+|+ |..++.+|+. |++ |+++|.++ -++.+++    .+..           ..+..... ....... 
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~-----------~~i~~~~~-~~~~~~~-  182 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT-----------ALAEPEVL-AERQGGL-  182 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc-----------EecCchhh-HHHHHHH-
Confidence            678999999875 6666666654 876 88888643 4444433    1210           00110000 0000000 


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .....+|+++-.-      --...+....+.++++|.+++..
T Consensus       183 ~~~~g~d~vid~~------G~~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       183 QNGRGVDVALEFS------GATAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             hCCCCCCEEEECC------CChHHHHHHHHHhcCCCEEEEec
Confidence            0123588887531      12356677778889999876544

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK08267 short chain dehydrogenase; Provisional

Probab=86.71  E-value=7.7  Score=30.82  Aligned_cols=74  Identities=19%  Similarity=0.192  Sum_probs=44.1

Q ss_pred             CcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc--
Q 029065           44 KRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--  117 (199)
Q Consensus        44 ~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--  117 (199)
                      +++|=.|++.|+   ++..++..|++|++++.+ +.++.+...+.               ..++.+..+|+.+.....  
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------------~~~~~~~~~D~~~~~~v~~~   66 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---------------AGNAWTGALDVTDRAAWDAA   66 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---------------CCceEEEEecCCCHHHHHHH
Confidence            568888876553   444455669999999863 34444333221               125677788887654221  


Q ss_pred             --cc----CCCccEEEEeccc
Q 029065          118 --AV----APPFDYIIGTDVV  132 (199)
Q Consensus       118 --~~----~~~fD~Ii~~~~~  132 (199)
                        ..    .+++|+++.+...
T Consensus        67 ~~~~~~~~~~~id~vi~~ag~   87 (260)
T PRK08267         67 LADFAAATGGRLDVLFNNAGI   87 (260)
T ss_pred             HHHHHHHcCCCCCEEEECCCC
Confidence              00    3578999876544

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=86.59  E-value=3.5  Score=34.11  Aligned_cols=33  Identities=30%  Similarity=0.476  Sum_probs=23.3

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCe-EEEeech
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCN-VITTDQI   73 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~-v~~~D~~   73 (199)
                      .++++++|=+|+| |.   +...++..|++ |+.++.+
T Consensus       123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~  159 (289)
T PRK12548        123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIK  159 (289)
T ss_pred             CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCC
Confidence            3578899999997 53   33334567886 8888863

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=86.42  E-value=1.2  Score=35.85  Aligned_cols=97  Identities=16%  Similarity=0.177  Sum_probs=60.4

Q ss_pred             CCCC-CcEEEeCCCcChHHHHHHhh--------CCe---EEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEE
Q 029065           40 KLKG-KRVIELGAGCGVAGFGMALL--------GCN---VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE  107 (199)
Q Consensus        40 ~~~~-~~VLdlGcG~G~~sl~la~~--------g~~---v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~  107 (199)
                      .++| +++.||.+-+|.+|..+++.        +++   ++++|+..|.       .               ...+.-.+
T Consensus        38 i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-------P---------------I~GV~qlq   95 (294)
T KOG1099|consen   38 IFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-------P---------------IEGVIQLQ   95 (294)
T ss_pred             HHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-------c---------------cCceEEee
Confidence            3455 69999999999999999964        232   9999964431       1               22345556


Q ss_pred             eeeCCCccc-----cccCCCccEEEEecccc--CCc---------ChHHHHHHHHHhcCCCcEEEEE
Q 029065          108 LDWGNEDHI-----KAVAPPFDYIIGTDVVY--AEH---------LLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       108 ~d~~~~~~~-----~~~~~~fD~Ii~~~~~~--~~~---------~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      .|++.....     .+...+-|+|++.+..-  ..+         .+...+.....+|+|||.++--
T Consensus        96 ~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen   96 GDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             cccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence            666655322     12245889999874431  112         2344455556779999985443

>PRK05854 short chain dehydrogenase; Provisional

Probab=86.35  E-value=5.6  Score=33.01  Aligned_cols=82  Identities=21%  Similarity=0.212  Sum_probs=50.0

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ..+++++|=.|++.|+   ++..+++.|++|++++.+ +-.+.+...+.....           ...+.+..+|+.+...
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-----------~~~v~~~~~Dl~d~~s   79 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP-----------DAKLSLRALDLSSLAS   79 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCceEEEEecCCCHHH
Confidence            4678999999987764   445556679999988763 333333333322210           2257777888876542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ...++.|++|.+.-+
T Consensus        80 v~~~~~~~~~~~~~iD~li~nAG~  103 (313)
T PRK05854         80 VAALGEQLRAEGRPIHLLINNAGV  103 (313)
T ss_pred             HHHHHHHHHHhCCCccEEEECCcc
Confidence            21       113578999877544

>PRK07814 short chain dehydrogenase; Provisional

Probab=86.02  E-value=14  Score=29.43  Aligned_cols=78  Identities=15%  Similarity=0.219  Sum_probs=46.6

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   +...++..|++|++++.+ +.++.....+...             ...+.+..+|+.+....
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~   74 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA-------------GRRAHVVAADLAHPEAT   74 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHH
Confidence            578899999976553   334455569999999873 3444333333221             12567777887665432


Q ss_pred             c-------ccCCCccEEEEecc
Q 029065          117 K-------AVAPPFDYIIGTDV  131 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~  131 (199)
                      .       ..-+++|+|+.+..
T Consensus        75 ~~~~~~~~~~~~~id~vi~~Ag   96 (263)
T PRK07814         75 AGLAGQAVEAFGRLDIVVNNVG   96 (263)
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            1       01247899887643

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=85.98  E-value=13  Score=28.15  Aligned_cols=45  Identities=20%  Similarity=0.157  Sum_probs=35.0

Q ss_pred             CCCccEEEEeccccC-------------CcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          120 APPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~-------------~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      .+.||.|+-+-|-..             ...+..++..+.++|+++|.|+|+.....+
T Consensus        73 ~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p  130 (166)
T PF10354_consen   73 NQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP  130 (166)
T ss_pred             CCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence            468999999866443             124777888889999999999999887654

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.97  E-value=3.9  Score=33.81  Aligned_cols=82  Identities=20%  Similarity=0.236  Sum_probs=50.2

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-h-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      ...++++++|=.|++.|+   ++..++..|++|+.+|. + ..++.+...+...             ..++.+..+|+.+
T Consensus         7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~-------------g~~~~~~~~Dv~d   73 (306)
T PRK07792          7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA-------------GAKAVAVAGDISQ   73 (306)
T ss_pred             CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc-------------CCeEEEEeCCCCC
Confidence            355789999999998775   55566677999999986 2 2333333333222             1256677777765


Q ss_pred             Cccccc------cCCCccEEEEeccc
Q 029065          113 EDHIKA------VAPPFDYIIGTDVV  132 (199)
Q Consensus       113 ~~~~~~------~~~~fD~Ii~~~~~  132 (199)
                      .+....      .-++.|++|.+..+
T Consensus        74 ~~~~~~~~~~~~~~g~iD~li~nAG~   99 (306)
T PRK07792         74 RATADELVATAVGLGGLDIVVNNAGI   99 (306)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            432110      02578998877544

>PRK06128 oxidoreductase; Provisional

Probab=85.89  E-value=12  Score=30.63  Aligned_cols=80  Identities=15%  Similarity=0.179  Sum_probs=45.4

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh---HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE---VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~---~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      .+++++||=.|+..|+   ++..++..|++|+.+..+.   ..+.....+...             ...+.+..+|+.+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~  118 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE-------------GRKAVALPGDLKDE  118 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc-------------CCeEEEEecCCCCH
Confidence            3678899999986654   4455556799988776421   122222222221             12456677787655


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ....       ..-++.|++|.+..+
T Consensus       119 ~~v~~~~~~~~~~~g~iD~lV~nAg~  144 (300)
T PRK06128        119 AFCRQLVERAVKELGGLDILVNIAGK  144 (300)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            3211       112468999877553

>PRK08703 short chain dehydrogenase; Provisional

Probab=85.77  E-value=7  Score=30.61  Aligned_cols=42  Identities=24%  Similarity=0.291  Sum_probs=27.3

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHH
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKR   81 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~   81 (199)
                      .+++++||=.||+.|+   +...++..|.+|++++.+. .++....
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~   48 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYD   48 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHH
Confidence            3568899999976553   3444555689999998733 4443333

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=85.76  E-value=3.7  Score=34.78  Aligned_cols=32  Identities=22%  Similarity=0.261  Sum_probs=24.1

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHhh-CCeEEEeech
Q 029065           42 KGKRVIELGAGC-GVAGFGMALL-GCNVITTDQI   73 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~~-g~~v~~~D~~   73 (199)
                      .|.+||=.|+|. |...+.+|+. |++|++++.+
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~  216 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS  216 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            577888899875 7777777754 8888888763

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=85.70  E-value=2.3  Score=33.57  Aligned_cols=94  Identities=27%  Similarity=0.274  Sum_probs=52.6

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-  116 (199)
                      .++.+||-.|+|. |...+.+++ .|.+|++++.++ ..+.++.    .+..              ..  ++....... 
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~--------------~~--~~~~~~~~~~  192 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----LGAD--------------HV--IDYKEEDLEE  192 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCCc--------------ee--ccCCcCCHHH
Confidence            4578999999986 545555554 488899998743 4444422    1110              00  111111100 


Q ss_pred             ---cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          117 ---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       117 ---~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                         ....+.+|+++.+-.      ....+..+.+.++++|.++....
T Consensus       193 ~~~~~~~~~~d~vi~~~~------~~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         193 ELRLTGGGGADVVIDAVG------GPETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             HHHHhcCCCCCEEEECCC------CHHHHHHHHHhcccCCEEEEEcc
Confidence               112357999986421      11456777788889998766543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK08589 short chain dehydrogenase; Validated

Probab=85.60  E-value=6.6  Score=31.65  Aligned_cols=79  Identities=23%  Similarity=0.315  Sum_probs=48.6

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++++++|=.|++.|+   ++..++..|++|++++.++.++.....+...             ..++....+|..+.....
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~   70 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSN-------------GGKAKAYHVDISDEQQVK   70 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhc-------------CCeEEEEEeecCCHHHHH
Confidence            568899999987764   4555666799999998654333333333222             124677778887654221


Q ss_pred             -------ccCCCccEEEEeccc
Q 029065          118 -------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       118 -------~~~~~fD~Ii~~~~~  132 (199)
                             ..-++.|++|.+..+
T Consensus        71 ~~~~~~~~~~g~id~li~~Ag~   92 (272)
T PRK08589         71 DFASEIKEQFGRVDVLFNNAGV   92 (272)
T ss_pred             HHHHHHHHHcCCcCEEEECCCC
Confidence                   112568999877644

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=85.55  E-value=1.3  Score=35.61  Aligned_cols=33  Identities=30%  Similarity=0.226  Sum_probs=24.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE   74 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~   74 (199)
                      +..+++|..||+|.+++.+...+.+|+..|+..
T Consensus        20 ~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~   52 (260)
T PF02086_consen   20 KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINP   52 (260)
T ss_dssp             S-SEEEETT-TTSHHHHCC---SSEEEEEES-H
T ss_pred             CCCEEEEEecchhHHHHHhcccccceeeeechH
Confidence            578999999999988888877888899999844

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK07063 short chain dehydrogenase; Provisional

Probab=85.54  E-value=3.7  Score=32.71  Aligned_cols=81  Identities=19%  Similarity=0.227  Sum_probs=49.4

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      +++++||=.|++.|+   ++..++..|++|++++.+ +.++.....+.....           ..++.+..+|+.+....
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~~   73 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVA-----------GARVLAVPADVTDAASV   73 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC-----------CceEEEEEccCCCHHHH
Confidence            568899999987664   445555679999999873 344444443332100           23567777888665422


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ..-++.|+++.+..+
T Consensus        74 ~~~~~~~~~~~g~id~li~~ag~   96 (260)
T PRK07063         74 AAAVAAAEEAFGPLDVLVNNAGI   96 (260)
T ss_pred             HHHHHHHHHHhCCCcEEEECCCc
Confidence            1       112478998876543

>PRK05876 short chain dehydrogenase; Provisional

Probab=85.22  E-value=4.4  Score=32.86  Aligned_cols=79  Identities=15%  Similarity=0.214  Sum_probs=48.1

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...+             .++.+..+|+.+....
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~v   70 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG-------------FDVHGVMCDVRHREEV   70 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEeCCCCCHHHH
Confidence            678899999987764   445555679999999873 34443333332221             2466677787665422


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ..-++.|++|.+.-+
T Consensus        71 ~~~~~~~~~~~g~id~li~nAg~   93 (275)
T PRK05876         71 THLADEAFRLLGHVDVVFSNAGI   93 (275)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCc
Confidence            1       112468998877544

>PRK06125 short chain dehydrogenase; Provisional

Probab=85.09  E-value=6.7  Score=31.18  Aligned_cols=80  Identities=24%  Similarity=0.300  Sum_probs=48.0

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   +...++..|++|++++.+ +.++.+...+....            ..++.+...|+.+....
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~D~~~~~~~   72 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH------------GVDVAVHALDLSSPEAR   72 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHHH
Confidence            468899999987664   344455679999999873 34444433333221            22566777777654322


Q ss_pred             c---ccCCCccEEEEeccc
Q 029065          117 K---AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~---~~~~~fD~Ii~~~~~  132 (199)
                      .   ..-++.|+++.+...
T Consensus        73 ~~~~~~~g~id~lv~~ag~   91 (259)
T PRK06125         73 EQLAAEAGDIDILVNNAGA   91 (259)
T ss_pred             HHHHHHhCCCCEEEECCCC
Confidence            1   112578998877543

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=85.04  E-value=7.3  Score=31.95  Aligned_cols=92  Identities=22%  Similarity=0.243  Sum_probs=45.5

Q ss_pred             CCCCcEEEeCCCc--Ch-HHHH-HHhh---CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           41 LKGKRVIELGAGC--GV-AGFG-MALL---GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        41 ~~~~~VLdlGcG~--G~-~sl~-la~~---g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ..+.+||.+|+|+  |. +|-. +.+.   ++-++-.|+.+..       ..                .-.....|... 
T Consensus        60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v-------SD----------------a~~~~~~Dc~t-  115 (299)
T PF06460_consen   60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV-------SD----------------ADQSIVGDCRT-  115 (299)
T ss_dssp             -TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B--------S----------------SSEEEES-GGG-
T ss_pred             ccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc-------cc----------------cCCceeccccc-
Confidence            3578999999996  53 3433 3332   5556666754410       00                11222333321 


Q ss_pred             ccccccCCCccEEEEeccccC-------------CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          114 DHIKAVAPPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       114 ~~~~~~~~~fD~Ii~~~~~~~-------------~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                         -..+.+||+|++. + |.             .....-+...++..|+-||.+.|-...
T Consensus       116 ---~~~~~k~DlIiSD-m-Yd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE  171 (299)
T PF06460_consen  116 ---YMPPDKFDLIISD-M-YDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITE  171 (299)
T ss_dssp             ---EEESS-EEEEEE------TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-S
T ss_pred             ---cCCCCcccEEEEe-c-ccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeec
Confidence               1336789999985 3 31             223555667778888999998887664

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=85.00  E-value=7.2  Score=32.61  Aligned_cols=110  Identities=16%  Similarity=0.072  Sum_probs=66.5

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ....+.||=+|.|-|-.-...+++  -..++..|+.. +++..++-......  .+.      ..++...-+|-...  .
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~--gy~------~~~v~l~iGDG~~f--l  188 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLAC--GYE------GKKVKLLIGDGFLF--L  188 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhc--ccC------CCceEEEeccHHHH--H
Confidence            345689999999987544444443  33578888855 77766665433211  111      23566555443211  1


Q ss_pred             cc-cCCCccEEEE--eccccC--CcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 KA-VAPPFDYIIG--TDVVYA--EHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ~~-~~~~fD~Ii~--~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .. ..++||+||.  +++...  .-....+.+.+.+.||++|.+....
T Consensus       189 ~~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  189 EDLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             HHhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            22 2678999985  355443  2346778889999999999765544

>TIGR00518 alaDH alanine dehydrogenase

Probab=84.92  E-value=3  Score=35.80  Aligned_cols=33  Identities=30%  Similarity=0.353  Sum_probs=23.8

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHH-hhCCeEEEeech
Q 029065           41 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQI   73 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la-~~g~~v~~~D~~   73 (199)
                      +.+++|+=+|+|. |......+ ..|++|+.+|..
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            4567899999984 65555544 458899999974

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=84.64  E-value=7.9  Score=30.70  Aligned_cols=78  Identities=21%  Similarity=0.256  Sum_probs=46.5

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++++++|=.|++.|+   ++..++..|++|+.+|.++........+...             ...+.+..+|+.+.+..
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~   71 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAA-------------GGEALALTADLETYAGA   71 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhc-------------CCeEEEEEEeCCCHHHH
Confidence            3578899999987664   4555566799999998754222222222221             12456677787664321


Q ss_pred             c-------ccCCCccEEEEec
Q 029065          117 K-------AVAPPFDYIIGTD  130 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~  130 (199)
                      .       ...+..|+++.+.
T Consensus        72 ~~~~~~~~~~~~~id~lv~nA   92 (260)
T PRK12823         72 QAAMAAAVEAFGRIDVLINNV   92 (260)
T ss_pred             HHHHHHHHHHcCCCeEEEECC
Confidence            1       1124789988765

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=84.50  E-value=2.1  Score=36.35  Aligned_cols=39  Identities=31%  Similarity=0.461  Sum_probs=26.7

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeechh-HHHHHH
Q 029065           42 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQIE-VLPLLK   80 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~~-~l~~a~   80 (199)
                      .+.+||=+|+|. |...+.+|+ .|+ +|+++|.++ -++.++
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~  233 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR  233 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence            567888899874 666666665 488 599998743 444443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK07326 short chain dehydrogenase; Provisional

Probab=84.17  E-value=15  Score=28.52  Aligned_cols=77  Identities=25%  Similarity=0.299  Sum_probs=43.2

Q ss_pred             CCCCcEEEeCCCcChHHHHHH----hhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la----~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ..+++||=.|++. .+|..++    ..|++|++++.+ +.++.+...+...              ..+.+..+|..+...
T Consensus         4 ~~~~~ilItGatg-~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~D~~~~~~   68 (237)
T PRK07326          4 LKGKVALITGGSK-GIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--------------GNVLGLAADVRDEAD   68 (237)
T ss_pred             CCCCEEEEECCCC-cHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--------------CcEEEEEccCCCHHH
Confidence            3568899999644 3344444    558899999863 3333333322211              256777777765532


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ...+.+|+|+.+...
T Consensus        69 ~~~~~~~~~~~~~~~d~vi~~ag~   92 (237)
T PRK07326         69 VQRAVDAIVAAFGGLDVLIANAGV   92 (237)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            21       112468998866433

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=84.15  E-value=7.7  Score=30.75  Aligned_cols=82  Identities=21%  Similarity=0.271  Sum_probs=48.9

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      +..+++++||=.|++.|+   +...++..|++|++++. .+.++.+...+...             ..++.+...|+.+.
T Consensus         6 ~~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~   72 (255)
T PRK06113          6 NLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-------------GGQAFACRCDITSE   72 (255)
T ss_pred             ccCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCH
Confidence            445678999999987764   33445566999988886 33444433332221             12456667787655


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      +...       ..-+++|+++.+..+
T Consensus        73 ~~i~~~~~~~~~~~~~~d~li~~ag~   98 (255)
T PRK06113         73 QELSALADFALSKLGKVDILVNNAGG   98 (255)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            4221       112468998876543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=84.05  E-value=2.4  Score=32.46  Aligned_cols=103  Identities=21%  Similarity=0.230  Sum_probs=54.5

Q ss_pred             EEEeCCCc-C-hHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhcc-ccCCC----CCCCCCcEEEEEeeeCCCcccc
Q 029065           46 VIELGAGC-G-VAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRI-SQMNP----GSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        46 VLdlGcG~-G-~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~-~~~~~----~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      |.=||+|+ | .++..++..|.+|+..|.+ +.++.++..+....... ..-..    ......++.+.. |      +.
T Consensus         2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-d------l~   74 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTT-D------LE   74 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEES-S------GG
T ss_pred             EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccccc-C------HH
Confidence            55578886 5 4677777889999999984 47777776665421100 00000    000012333221 1      11


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      ... ..|+|+-+- .-..+..++++..+.+++.|+..+.-
T Consensus        75 ~~~-~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilas  112 (180)
T PF02737_consen   75 EAV-DADLVIEAI-PEDLELKQELFAELDEICPPDTILAS  112 (180)
T ss_dssp             GGC-TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE
T ss_pred             HHh-hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEe
Confidence            122 678887653 23345568888888888888775433

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK05872 short chain dehydrogenase; Provisional

Probab=83.98  E-value=4.3  Score=33.28  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=47.8

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..+++++||=.|++.|+   ++..++..|++|++++.+ +.++.....+..              ...+....+|+.+.+
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~--------------~~~~~~~~~Dv~d~~   70 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG--------------DDRVLTVVADVTDLA   70 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--------------CCcEEEEEecCCCHH
Confidence            34678999999987764   455555679999999873 333333222211              123455557776553


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ...       ...++.|++|.+.-+
T Consensus        71 ~v~~~~~~~~~~~g~id~vI~nAG~   95 (296)
T PRK05872         71 AMQAAAEEAVERFGGIDVVVANAGI   95 (296)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCc
Confidence            221       112578999987654

>PRK08303 short chain dehydrogenase; Provisional

Probab=83.92  E-value=7.1  Score=32.37  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=26.0

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ   72 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~   72 (199)
                      ..++++++|=.|++.|+   ++..++..|++|++++.
T Consensus         4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r   40 (305)
T PRK08303          4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGR   40 (305)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEec
Confidence            34678999999998774   45555567999998875

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=83.65  E-value=8.7  Score=26.67  Aligned_cols=70  Identities=16%  Similarity=0.162  Sum_probs=42.1

Q ss_pred             CccEEEEeccccCCc--------------ChHHHHHHHHHhcCCCcEEEEEEEec---ChhHHHHHHHHHHhCCeEEEec
Q 029065          122 PFDYIIGTDVVYAEH--------------LLEPLLQTIFALSGPKTTILLGYEIR---STSVHEQMLQMWKSNFNVKLVP  184 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~--------------~~~~~l~~l~~~l~~~g~i~i~~~~~---~~~~~~~~~~~~~~~~~v~~~~  184 (199)
                      .||+||.|||+-...              ....++....++|  +|.+.+..|..   .......+.+.+.....+..+-
T Consensus         2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~~~i~~i~   79 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNNTNIKKII   79 (106)
T ss_pred             CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcCCCeeEEE
Confidence            599999999974321              2444777777778  78776666542   1223455666666666665554


Q ss_pred             CCCcCc-ccC
Q 029065          185 KAKEST-MWG  193 (199)
Q Consensus       185 ~~~~~~-~~~  193 (199)
                      ...... .|.
T Consensus        80 ~f~~~~~vF~   89 (106)
T PF07669_consen   80 DFGERKKVFE   89 (106)
T ss_pred             ECCCcccCCC
Confidence            444333 554

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=83.62  E-value=4.9  Score=31.96  Aligned_cols=79  Identities=19%  Similarity=0.236  Sum_probs=47.6

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+++++||=.|++.|+   ++..++..|++|+.++.+.-.+.+...+...             ...+.+..+|..+.+..
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i   78 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKE-------------GRKVTFVQVDLTKPESA   78 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence            4678999999998764   4455566799988887643222332222221             12567777887765422


Q ss_pred             c-------ccCCCccEEEEecc
Q 029065          117 K-------AVAPPFDYIIGTDV  131 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~  131 (199)
                      .       ..-+..|+++.+..
T Consensus        79 ~~~~~~~~~~~g~id~li~~ag  100 (258)
T PRK06935         79 EKVVKEALEEFGKIDILVNNAG  100 (258)
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            1       11246899887644

>PRK07890 short chain dehydrogenase; Provisional

Probab=83.62  E-value=7.1  Score=30.83  Aligned_cols=79  Identities=23%  Similarity=0.233  Sum_probs=47.3

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++++||=.|++.|+   ++..++..|++|++++.++ -++.+...+...             ..++.....|+.+....
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~   69 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL-------------GRRALAVPTDITDEDQC   69 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh-------------CCceEEEecCCCCHHHH
Confidence            457899988886664   4455556799999999733 333333333222             12467777887655322


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ..-++.|+|+.+...
T Consensus        70 ~~~~~~~~~~~g~~d~vi~~ag~   92 (258)
T PRK07890         70 ANLVALALERFGRVDALVNNAFR   92 (258)
T ss_pred             HHHHHHHHHHcCCccEEEECCcc
Confidence            1       112468998877643

>PRK07062 short chain dehydrogenase; Provisional

Probab=83.51  E-value=11  Score=30.01  Aligned_cols=82  Identities=16%  Similarity=0.131  Sum_probs=49.6

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=.|++.|+   ++..++..|++|++++.+ +-++.+...+.....           ..++....+|+.+.+.
T Consensus         5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~   73 (265)
T PRK07062          5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP-----------GARLLAARCDVLDEAD   73 (265)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC-----------CceEEEEEecCCCHHH
Confidence            3578999999987764   445555679999999873 344444333322210           1246667778766542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|+++.+..+
T Consensus        74 v~~~~~~~~~~~g~id~li~~Ag~   97 (265)
T PRK07062         74 VAAFAAAVEARFGGVDMLVNNAGQ   97 (265)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCC
Confidence            21       112568998877544

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=83.45  E-value=12  Score=32.40  Aligned_cols=100  Identities=16%  Similarity=0.089  Sum_probs=63.2

Q ss_pred             cEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCcc
Q 029065           45 RVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD  124 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD  124 (199)
                      .||=|+=..|.++..++..+.. ..+|.--....++.|+..|++.          .+.++...  -.     ....+.+|
T Consensus        47 ~~~i~nd~fGal~~~l~~~~~~-~~~ds~~~~~~~~~n~~~n~~~----------~~~~~~~~--~~-----~~~~~~~d  108 (378)
T PRK15001         47 PVLILNDAFGALSCALAEHKPY-SIGDSYISELATRENLRLNGID----------ESSVKFLD--ST-----ADYPQQPG  108 (378)
T ss_pred             CEEEEcCchhHHHHHHHhCCCC-eeehHHHHHHHHHHHHHHcCCC----------cccceeec--cc-----ccccCCCC
Confidence            7999999999999999965443 3356433445667788888742          11222221  11     12245699


Q ss_pred             EEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          125 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       125 ~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      +|+.--+ =........+..+...+.+++.+++....++
T Consensus       109 ~vl~~~P-K~~~~l~~~l~~l~~~l~~~~~ii~g~~~k~  146 (378)
T PRK15001        109 VVLIKVP-KTLALLEQQLRALRKVVTSDTRIIAGAKARD  146 (378)
T ss_pred             EEEEEeC-CCHHHHHHHHHHHHhhCCCCCEEEEEEecCC
Confidence            8876322 1223566677778888999999876666543

>PRK05866 short chain dehydrogenase; Provisional

Probab=83.38  E-value=5.9  Score=32.54  Aligned_cols=82  Identities=24%  Similarity=0.338  Sum_probs=48.5

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ...+++++||=.|++.|+   +...++..|++|++++.+ +.++.+...+...             ...+.+..+|..+.
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~-------------~~~~~~~~~Dl~d~  101 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA-------------GGDAMAVPCDLSDL  101 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCH
Confidence            344578899999987664   334455668999999874 3444443333221             12456677777655


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      +...       ...+..|+++.+...
T Consensus       102 ~~v~~~~~~~~~~~g~id~li~~AG~  127 (293)
T PRK05866        102 DAVDALVADVEKRIGGVDILINNAGR  127 (293)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3211       112478999877543

>PRK06181 short chain dehydrogenase; Provisional

Probab=83.38  E-value=13  Score=29.54  Aligned_cols=75  Identities=21%  Similarity=0.233  Sum_probs=41.9

Q ss_pred             CcEEEeCCCcChHHHH----HHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           44 KRVIELGAGCGVAGFG----MALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~----la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++||=.|+..| +|..    ++..|.+|++++.+. ..+.+...+...             ..++.+..+|..+.+....
T Consensus         2 ~~vlVtGasg~-iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~~~~   67 (263)
T PRK06181          2 KVVIITGASEG-IGRALAVRLARAGAQLVLAARNETRLASLAQELADH-------------GGEALVVPTDVSDAEACER   67 (263)
T ss_pred             CEEEEecCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHHHH
Confidence            56777776444 3444    445688999998743 333333333222             2256777788766542210


Q ss_pred             -------cCCCccEEEEeccc
Q 029065          119 -------VAPPFDYIIGTDVV  132 (199)
Q Consensus       119 -------~~~~fD~Ii~~~~~  132 (199)
                             .-+..|+|+.+...
T Consensus        68 ~~~~~~~~~~~id~vi~~ag~   88 (263)
T PRK06181         68 LIEAAVARFGGIDILVNNAGI   88 (263)
T ss_pred             HHHHHHHHcCCCCEEEECCCc
Confidence                   11468998877543

>PRK07478 short chain dehydrogenase; Provisional

Probab=83.30  E-value=5.3  Score=31.62  Aligned_cols=79  Identities=24%  Similarity=0.202  Sum_probs=47.7

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   +...++..|++|++++.+ +.++.+...+...+             .++.+..+|+.+.+..
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~   70 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG-------------GEAVALAGDVRDEAYA   70 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHHH
Confidence            567899988887664   445555679999999863 34444433333221             2466677777655321


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ..-++.|+++.+..+
T Consensus        71 ~~~~~~~~~~~~~id~li~~ag~   93 (254)
T PRK07478         71 KALVALAVERFGGLDIAFNNAGT   93 (254)
T ss_pred             HHHHHHHHHhcCCCCEEEECCCC
Confidence            1       112478998877543

>PRK07035 short chain dehydrogenase; Provisional

Probab=83.27  E-value=8.9  Score=30.23  Aligned_cols=79  Identities=19%  Similarity=0.269  Sum_probs=47.5

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=.|++.|+   +...++..|++|++++.+ +.++...+.+...+             .++.+...|+.+...
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~   71 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG-------------GKAEALACHIGEMEQ   71 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEEcCCCCHHH
Confidence            3567899999988764   445555679999999973 34444433332221             245566677765542


Q ss_pred             cc-------ccCCCccEEEEecc
Q 029065          116 IK-------AVAPPFDYIIGTDV  131 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~  131 (199)
                      ..       ..-++.|+++.+..
T Consensus        72 ~~~~~~~~~~~~~~id~li~~ag   94 (252)
T PRK07035         72 IDALFAHIRERHGRLDILVNNAA   94 (252)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       11246899886654

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=83.24  E-value=7.6  Score=31.64  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=25.2

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHh-hCCe--EEEeechh
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMAL-LGCN--VITTDQIE   74 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~-~g~~--v~~~D~~~   74 (199)
                      ..-.|.+||=||+++|..=-+.+. -|..  |.+++.+.
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~  191 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH  191 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence            334588999999999974444443 3554  88888754

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=83.22  E-value=6.1  Score=31.44  Aligned_cols=78  Identities=23%  Similarity=0.321  Sum_probs=47.4

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++++++|=.|++.|+   ++..+++.|++|++++..+. +.+...+...             ..++.+..+|..+.+...
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~-~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~   71 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA-PETQAQVEAL-------------GRKFHFITADLIQQKDID   71 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH-HHHHHHHHHc-------------CCeEEEEEeCCCCHHHHH
Confidence            568999999988774   45556677999998875321 1222222221             225667778876654221


Q ss_pred             -------ccCCCccEEEEeccc
Q 029065          118 -------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       118 -------~~~~~fD~Ii~~~~~  132 (199)
                             ..-++.|+++.+.-+
T Consensus        72 ~~~~~~~~~~g~iD~lv~~ag~   93 (251)
T PRK12481         72 SIVSQAVEVMGHIDILINNAGI   93 (251)
T ss_pred             HHHHHHHHHcCCCCEEEECCCc
Confidence                   112578998877544

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=83.18  E-value=10  Score=32.05  Aligned_cols=97  Identities=20%  Similarity=0.242  Sum_probs=61.1

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHH-hhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la-~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      +.+.+|.=||.|. |..+--+| -.|+.|+.+|.+. -+++...-.                ..++........   ...
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f----------------~~rv~~~~st~~---~ie  226 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLF----------------GGRVHTLYSTPS---NIE  226 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhh----------------CceeEEEEcCHH---HHH
Confidence            3445778889886 76665555 4589999999853 333332221                123443332221   111


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  156 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~  156 (199)
                      ..-...|++|..=.+-....+.-+.+.+.+.++||+.++
T Consensus       227 e~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         227 EAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             HHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence            223579999998776667778888888889999987653

>PRK08862 short chain dehydrogenase; Provisional

Probab=83.08  E-value=6.7  Score=30.93  Aligned_cols=77  Identities=18%  Similarity=0.149  Sum_probs=47.7

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   ++..++..|++|++++.+ +.++.+.+.+...+             ..+....+|..+.+..
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~-------------~~~~~~~~D~~~~~~~   69 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT-------------DNVYSFQLKDFSQESI   69 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CCeEEEEccCCCHHHH
Confidence            568899999998875   556666779999998863 34444444333322             1345555666554322


Q ss_pred             c-------ccCC-CccEEEEec
Q 029065          117 K-------AVAP-PFDYIIGTD  130 (199)
Q Consensus       117 ~-------~~~~-~fD~Ii~~~  130 (199)
                      .       ..-+ +.|+++.+.
T Consensus        70 ~~~~~~~~~~~g~~iD~li~na   91 (227)
T PRK08862         70 RHLFDAIEQQFNRAPDVLVNNW   91 (227)
T ss_pred             HHHHHHHHHHhCCCCCEEEECC
Confidence            1       1114 789988775

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=82.97  E-value=17  Score=29.52  Aligned_cols=79  Identities=23%  Similarity=0.296  Sum_probs=51.6

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-  115 (199)
                      .++|.+|==|+.+|.   .+..++..|++|+++.- .+.|+.....+..               ..+....+|..+... 
T Consensus         4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---------------~~~~~~~~DVtD~~~~   68 (246)
T COG4221           4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA---------------GAALALALDVTDRAAV   68 (246)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---------------CceEEEeeccCCHHHH
Confidence            346778888888774   55666677999999986 4455554443322               145777788876643 


Q ss_pred             ------ccccCCCccEEEEeccccC
Q 029065          116 ------IKAVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       116 ------~~~~~~~fD~Ii~~~~~~~  134 (199)
                            .+..-+++|+++-|.-++-
T Consensus        69 ~~~i~~~~~~~g~iDiLvNNAGl~~   93 (246)
T COG4221          69 EAAIEALPEEFGRIDILVNNAGLAL   93 (246)
T ss_pred             HHHHHHHHHhhCcccEEEecCCCCc
Confidence                  1222367999998866543

>PRK06172 short chain dehydrogenase; Provisional

Probab=82.86  E-value=4  Score=32.32  Aligned_cols=79  Identities=19%  Similarity=0.220  Sum_probs=48.1

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      +++++||=.|++.|+   +...++..|++|++++.+ +-++.+...+...             ..++.....|+.+....
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i   71 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA-------------GGEALFVACDVTRDAEV   71 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence            568899999986654   444455668999999863 3444333333222             22567777888655322


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ...++.|+|+.+...
T Consensus        72 ~~~~~~~~~~~g~id~li~~ag~   94 (253)
T PRK06172         72 KALVEQTIAAYGRLDYAFNNAGI   94 (253)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCC
Confidence            1       112468999877543

>PRK07985 oxidoreductase; Provisional

Probab=82.83  E-value=25  Score=28.80  Aligned_cols=80  Identities=18%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech---hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI---EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~---~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      ..++++++|=.|++.|+   ++..++..|++|++++.+   +.++.+...+...             ...+.+..+|+.+
T Consensus        45 ~~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~  111 (294)
T PRK07985         45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEEC-------------GRKAVLLPGDLSD  111 (294)
T ss_pred             CccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHc-------------CCeEEEEEccCCC
Confidence            34778999999986654   556666679998887642   2233332222222             1245667778766


Q ss_pred             Ccccc-------ccCCCccEEEEecc
Q 029065          113 EDHIK-------AVAPPFDYIIGTDV  131 (199)
Q Consensus       113 ~~~~~-------~~~~~fD~Ii~~~~  131 (199)
                      .+...       ..-++.|+++.+..
T Consensus       112 ~~~~~~~~~~~~~~~g~id~lv~~Ag  137 (294)
T PRK07985        112 EKFARSLVHEAHKALGGLDIMALVAG  137 (294)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            53211       11246898887643

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=82.70  E-value=3.1  Score=34.63  Aligned_cols=38  Identities=34%  Similarity=0.461  Sum_probs=26.0

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHh-hCCe-EEEeechh-HHHHH
Q 029065           42 KGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQIE-VLPLL   79 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~-~g~~-v~~~D~~~-~l~~a   79 (199)
                      +|.+||=+|+|. |...+.+++ .|++ |+++|.++ -++.+
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~  204 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELA  204 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            478899898864 666666664 4888 99998643 44444

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=82.67  E-value=4.5  Score=32.78  Aligned_cols=113  Identities=10%  Similarity=0.054  Sum_probs=63.8

Q ss_pred             eCCCcChHHHHHH--hhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC-ccccccCCCcc
Q 029065           49 LGAGCGVAGFGMA--LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DHIKAVAPPFD  124 (199)
Q Consensus        49 lGcG~G~~sl~la--~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~~~~fD  124 (199)
                      +..-+|...+...  +..-+.++.|+ +.-.+..+.++...              .++.+.+.|--.. ...-++..+=-
T Consensus        62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--------------~~v~v~~~DG~~~l~allPP~~rRg  127 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD--------------RRVRVHHRDGYEGLKALLPPPERRG  127 (245)
T ss_dssp             --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT--------------S-EEEE-S-HHHHHHHH-S-TTS-E
T ss_pred             cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC--------------CccEEEeCchhhhhhhhCCCCCCCe
Confidence            4455665555444  44567999998 66666666555432              3677777554211 11122344566


Q ss_pred             EEEEeccccCCcChHHHHHHHHHhcC--CCcEEEEEEEecChhHHHHHHHHHH
Q 029065          125 YIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVHEQMLQMWK  175 (199)
Q Consensus       125 ~Ii~~~~~~~~~~~~~~l~~l~~~l~--~~g~i~i~~~~~~~~~~~~~~~~~~  175 (199)
                      +|+..+++-...+...++..+...++  +.|++.|=+|.......+.|.+.+.
T Consensus       128 lVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~  180 (245)
T PF04378_consen  128 LVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALK  180 (245)
T ss_dssp             EEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHH
Confidence            88888887778999999999999987  7888888888876666677777765

; PDB: 2OO3_A.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.54  E-value=21  Score=27.84  Aligned_cols=78  Identities=24%  Similarity=0.293  Sum_probs=46.3

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      +++++||=.|+..|+   +...++..|.+|++++.+. -++.+...+.. +             ..+.+..+|+.+....
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~-------------~~~~~~~~D~~~~~~~   68 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G-------------GRAIAVAADVSDEADV   68 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-------------CeEEEEECCCCCHHHH
Confidence            567889999886543   4445556699999999743 33333232221 1             2466777787655432


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ...+++|+|+.+...
T Consensus        69 ~~~~~~~~~~~~~~d~vi~~ag~   91 (251)
T PRK07231         69 EAAVAAALERFGSVDILVNNAGT   91 (251)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCC
Confidence            1       112468999877544

>PRK12937 short chain dehydrogenase; Provisional

Probab=82.28  E-value=21  Score=27.73  Aligned_cols=79  Identities=22%  Similarity=0.188  Sum_probs=44.5

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec--hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +++++||=.|+..|+   ++..+++.|++|+.+..  ....+...+.+...             ..++.+...|+.+.+.
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~   69 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAA-------------GGRAIAVQADVADAAA   69 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHH
Confidence            567889999986653   44455567898877654  22233232222222             2256777777765432


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|+++.+...
T Consensus        70 ~~~~~~~~~~~~~~id~vi~~ag~   93 (245)
T PRK12937         70 VTRLFDAAETAFGRIDVLVNNAGV   93 (245)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            11       012468988876543

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=82.17  E-value=4.9  Score=33.87  Aligned_cols=96  Identities=21%  Similarity=0.167  Sum_probs=51.4

Q ss_pred             CCCCcEEEeCC-C-cChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe-eeCCCcc
Q 029065           41 LKGKRVIELGA-G-CGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGc-G-~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~  115 (199)
                      -+|.+||=.|+ | .|...+.+|+. |++|++++.++ -++.++..   .+..           ..+..... ++... .
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~-----------~vi~~~~~~~~~~~-i  221 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD-----------EAFNYKEEPDLDAA-L  221 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC-----------EEEECCCcccHHHH-H
Confidence            35789999998 4 47777777754 88899888633 44444322   1210           01111100 11100 0


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      .....+.+|+|+-.  .    . ...+....+.++++|.+.+.
T Consensus       222 ~~~~~~gvD~v~d~--v----G-~~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        222 KRYFPEGIDIYFDN--V----G-GDMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             HHHCCCCcEEEEEC--C----C-HHHHHHHHHHhccCCEEEEE
Confidence            00112368888743  1    1 24667777888999987654

>PRK06194 hypothetical protein; Provisional

Probab=82.16  E-value=4.9  Score=32.49  Aligned_cols=79  Identities=18%  Similarity=0.180  Sum_probs=45.2

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      +++++||=.|++.|+   +...++..|++|+++|.+ +.++.....+...             ..++.+..+|+.+....
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~d~~~~   70 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ-------------GAEVLGVRTDVSDAAQV   70 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHHH
Confidence            457889977765543   333444569999999973 3444333332221             12466677787655322


Q ss_pred             cc-------cCCCccEEEEeccc
Q 029065          117 KA-------VAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~~-------~~~~fD~Ii~~~~~  132 (199)
                      ..       ..++.|+|+.+.-.
T Consensus        71 ~~~~~~~~~~~g~id~vi~~Ag~   93 (287)
T PRK06194         71 EALADAALERFGAVHLLFNNAGV   93 (287)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            11       12468999877554

>PRK05650 short chain dehydrogenase; Provisional

Probab=82.11  E-value=18  Score=28.89  Aligned_cols=75  Identities=19%  Similarity=0.068  Sum_probs=42.4

Q ss_pred             cEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc---
Q 029065           45 RVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK---  117 (199)
Q Consensus        45 ~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---  117 (199)
                      +||=.|+..|+   ++..++..|.+|++++.+. -++.+...+...             ...+.+..+|+.+.....   
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~~~~~   68 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA-------------GGDGFYQRCDVRDYSQLTALA   68 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEccCCCHHHHHHHH
Confidence            57777775553   4445556699999998633 333333333222             225667777876543211   


Q ss_pred             ----ccCCCccEEEEeccc
Q 029065          118 ----AVAPPFDYIIGTDVV  132 (199)
Q Consensus       118 ----~~~~~fD~Ii~~~~~  132 (199)
                          ...+++|++|.+...
T Consensus        69 ~~i~~~~~~id~lI~~ag~   87 (270)
T PRK05650         69 QACEEKWGGIDVIVNNAGV   87 (270)
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence                112478998877554

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.04  E-value=20  Score=27.89  Aligned_cols=78  Identities=26%  Similarity=0.303  Sum_probs=44.2

Q ss_pred             CCCCcEEEeCCCcChHHHH----HHhhCCeEEEe-ec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           41 LKGKRVIELGAGCGVAGFG----MALLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~----la~~g~~v~~~-D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      +.++++|=.|+. |.++..    ++..|++|+.+ +. .+..+.....+...             ..++.+...|+.+..
T Consensus         3 ~~~~~ilI~Gas-g~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~   68 (247)
T PRK05565          3 LMGKVAIVTGAS-GGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE-------------GGDAIAVKADVSSEE   68 (247)
T ss_pred             CCCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHH
Confidence            557788888863 333443    44568898887 75 33333333332221             225677788887654


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 029065          115 HIKA-------VAPPFDYIIGTDVV  132 (199)
Q Consensus       115 ~~~~-------~~~~fD~Ii~~~~~  132 (199)
                      ....       .-+++|+|+.+...
T Consensus        69 ~~~~~~~~~~~~~~~id~vi~~ag~   93 (247)
T PRK05565         69 DVENLVEQIVEKFGKIDILVNNAGI   93 (247)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCc
Confidence            2211       11368999876544

>PRK12939 short chain dehydrogenase; Provisional

Probab=81.96  E-value=22  Score=27.69  Aligned_cols=77  Identities=25%  Similarity=0.299  Sum_probs=44.1

Q ss_pred             CCCCcEEEeCCCcChHHHHH----HhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~l----a~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++|=.|++.| +|..+    +..|++|++++.+ +.++.....+...             ..++.+..+|+.+.+.
T Consensus         5 ~~~~~vlItGa~g~-iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~   70 (250)
T PRK12939          5 LAGKRALVTGAARG-LGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA-------------GGRAHAIAADLADPAS   70 (250)
T ss_pred             CCCCEEEEeCCCCh-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHH
Confidence            56788997787544 34444    4568999988863 3333333333221             1256777788865542


Q ss_pred             cc-------ccCCCccEEEEecc
Q 029065          116 IK-------AVAPPFDYIIGTDV  131 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~  131 (199)
                      ..       ..-++.|+|+.+.-
T Consensus        71 ~~~~~~~~~~~~~~id~vi~~ag   93 (250)
T PRK12939         71 VQRFFDAAAAALGGLDGLVNNAG   93 (250)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       00146899876643

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=81.88  E-value=19  Score=30.13  Aligned_cols=103  Identities=25%  Similarity=0.279  Sum_probs=58.9

Q ss_pred             cEEEeCCCc--ChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065           45 RVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  122 (199)
Q Consensus        45 ~VLdlGcG~--G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  122 (199)
                      +|+=+|||.  ++++..|++.|..|+.+-.++-++..+++    ++.+...      ..+......-    .........
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~----GL~i~~~------~~~~~~~~~~----~~~~~~~~~   67 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKK----GLRIEDE------GGNFTTPVVA----ATDAEALGP   67 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhC----CeEEecC------CCcccccccc----ccChhhcCC
Confidence            577899996  57888899999657777554433333332    4321000      0000000000    011122357


Q ss_pred             ccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          123 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       123 fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      +|+|+..-   -.-...+++..+..++++...+++....-..
T Consensus        68 ~Dlviv~v---Ka~q~~~al~~l~~~~~~~t~vl~lqNG~g~  106 (307)
T COG1893          68 ADLVIVTV---KAYQLEEALPSLAPLLGPNTVVLFLQNGLGH  106 (307)
T ss_pred             CCEEEEEe---ccccHHHHHHHhhhcCCCCcEEEEEeCCCcH
Confidence            99998752   2346788999999999999887666554433

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=81.56  E-value=7.7  Score=30.34  Aligned_cols=80  Identities=23%  Similarity=0.287  Sum_probs=45.8

Q ss_pred             CCCCcEEEeCCCcChHHHH----HHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~----la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ..+++||=.|++.| +|..    ++..|.+|++++.+ +.+......+...             ...+.+..+|+.+...
T Consensus         4 ~~~~~ilItGasg~-iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~   69 (251)
T PRK12826          4 LEGRVALVTGAARG-IGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA-------------GGKARARQVDVRDRAA   69 (251)
T ss_pred             CCCCEEEEcCCCCc-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHH
Confidence            45788998886544 3444    44568899999863 3333333333222             1246777888876532


Q ss_pred             cc-------ccCCCccEEEEeccccC
Q 029065          116 IK-------AVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~~  134 (199)
                      ..       ...+++|+|+.+.....
T Consensus        70 ~~~~~~~~~~~~~~~d~vi~~ag~~~   95 (251)
T PRK12826         70 LKAAVAAGVEDFGRLDILVANAGIFP   95 (251)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence            21       11146899887754443

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=80.97  E-value=11  Score=29.89  Aligned_cols=79  Identities=20%  Similarity=0.304  Sum_probs=47.3

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   +...+++.|++|+.++.+ +.++.+...+...             ...+....+|+.+.+..
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~~   73 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE-------------GIKAHAAPFNVTHKQEV   73 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc-------------CCeEEEEecCCCCHHHH
Confidence            568899999987664   444555669999999863 3434333333221             12456666777655422


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ...+++|+++.+...
T Consensus        74 ~~~~~~~~~~~~~id~vi~~ag~   96 (254)
T PRK08085         74 EAAIEHIEKDIGPIDVLINNAGI   96 (254)
T ss_pred             HHHHHHHHHhcCCCCEEEECCCc
Confidence            1       112568999887643

>PRK06720 hypothetical protein; Provisional

Probab=80.94  E-value=16  Score=27.63  Aligned_cols=81  Identities=23%  Similarity=0.268  Sum_probs=47.3

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+++.+|=.|.+.|+   +...++..|++|+.+|.+ +.++.+...+...+             ....+..+|..+....
T Consensus        14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dl~~~~~v   80 (169)
T PRK06720         14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG-------------GEALFVSYDMEKQGDW   80 (169)
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHHH
Confidence            468899999987764   444555679999999973 33333333332211             2345566777544321


Q ss_pred             c-------ccCCCccEEEEeccccC
Q 029065          117 K-------AVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~~~  134 (199)
                      .       ..-++.|+++.+..++.
T Consensus        81 ~~~v~~~~~~~G~iDilVnnAG~~~  105 (169)
T PRK06720         81 QRVISITLNAFSRIDMLFQNAGLYK  105 (169)
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCC
Confidence            1       11256899888755443

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=80.88  E-value=7.6  Score=33.20  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=24.4

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHhh-CCeEEEeech
Q 029065           42 KGKRVIELGAGC-GVAGFGMALL-GCNVITTDQI   73 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~~-g~~v~~~D~~   73 (199)
                      .|.+||=.|+|. |...+.+|+. |++|++++.+
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~  211 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS  211 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence            578899899875 7777777754 8888888863

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.86  E-value=5.4  Score=33.66  Aligned_cols=102  Identities=20%  Similarity=0.160  Sum_probs=54.3

Q ss_pred             CcEEEeCCCc-C-hHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCC-CCCCCCcEEEEEeeeCCCcccccc
Q 029065           44 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP-GSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        44 ~~VLdlGcG~-G-~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++|-=||+|+ | -++..++..|.+|+..|. ++.++.++..+...........+ ......++.+..       .....
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-------~l~~a   80 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-------TIEAC   80 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-------CHHHH
Confidence            4688889986 4 366677788999999998 44666655544322110000000 000011222211       11111


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCc
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT  153 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g  153 (199)
                      -...|+|+-+ ..-.......++..+.+.++|+.
T Consensus        81 v~~aDlViEa-vpE~l~vK~~lf~~l~~~~~~~a  113 (321)
T PRK07066         81 VADADFIQES-APEREALKLELHERISRAAKPDA  113 (321)
T ss_pred             hcCCCEEEEC-CcCCHHHHHHHHHHHHHhCCCCe
Confidence            2457877765 22334456677777888877776

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=80.74  E-value=14  Score=29.06  Aligned_cols=37  Identities=32%  Similarity=0.460  Sum_probs=25.7

Q ss_pred             CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech
Q 029065           37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI   73 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~   73 (199)
                      .+...++++||=.|+..|+   +...++..|++|+++|.+
T Consensus         6 ~~~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~   45 (247)
T PRK08945          6 KPDLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRT   45 (247)
T ss_pred             cccccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence            3456689999999975543   333444568899999973

>PRK07791 short chain dehydrogenase; Provisional

Probab=80.74  E-value=11  Score=30.83  Aligned_cols=80  Identities=21%  Similarity=0.223  Sum_probs=47.6

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech----------hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEE
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI----------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV  106 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~----------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~  106 (199)
                      .++++++|=.|++.|+   ++..++..|++|+.+|..          +.++.+...+...             ..++.+.
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~   69 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA-------------GGEAVAN   69 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc-------------CCceEEE
Confidence            3578999999998775   445566679998888752          3222222222221             1245666


Q ss_pred             EeeeCCCcccc-------ccCCCccEEEEeccc
Q 029065          107 ELDWGNEDHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       107 ~~d~~~~~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      .+|..+.+...       ..-++.|++|.+.-+
T Consensus        70 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         70 GDDIADWDGAANLVDAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             eCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence            77776553211       112578999877554

>PRK06949 short chain dehydrogenase; Provisional

Probab=80.59  E-value=9.2  Score=30.17  Aligned_cols=79  Identities=28%  Similarity=0.354  Sum_probs=46.2

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++++||=.|++.|+   +...++..|++|++++.+ +.++.+...+...             ..++.+..+|+.+.+..
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~   73 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-------------GGAAHVVSLDVTDYQSI   73 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHHH
Confidence            568899999965543   334444568899999863 3444443333222             12466777787654321


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ...++.|+|+.+...
T Consensus        74 ~~~~~~~~~~~~~~d~li~~ag~   96 (258)
T PRK06949         74 KAAVAHAETEAGTIDILVNNSGV   96 (258)
T ss_pred             HHHHHHHHHhcCCCCEEEECCCC
Confidence            1       112468998876543

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=80.53  E-value=23  Score=28.13  Aligned_cols=76  Identities=21%  Similarity=0.232  Sum_probs=44.8

Q ss_pred             CCCCcEEEeCCC--cCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           41 LKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        41 ~~~~~VLdlGcG--~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ++++++|=.|++  .|+   ++..+++.|++|+.++.++ ..+.+++   ..             ...+.+..+|..+.+
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~---~~-------------~~~~~~~~~Dl~~~~   68 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQK---LV-------------DEEDLLVECDVASDE   68 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHh---hc-------------cCceeEEeCCCCCHH
Confidence            578999999986  343   5566667799999887543 2221111   11             114566677876553


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ...       ..-++.|+++.+.-+
T Consensus        69 ~v~~~~~~~~~~~g~iD~lv~nAg~   93 (252)
T PRK06079         69 SIERAFATIKERVGKIDGIVHAIAY   93 (252)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEcccc
Confidence            221       112578998877544

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=80.28  E-value=8.7  Score=31.94  Aligned_cols=101  Identities=16%  Similarity=0.088  Sum_probs=56.9

Q ss_pred             CcEEEeCCCc--ChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           44 KRVIELGAGC--GVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        44 ~~VLdlGcG~--G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .+|+=+|+|.  |.++..|++.|..|+.++-. +-++..+++   +|+.+..     + .....+. ....    .....
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~-----~-g~~~~~~-~~~~----~~~~~   68 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA---GGLTLVE-----Q-GQASLYA-IPAE----TADAA   68 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc---CCeEEee-----C-Ccceeec-cCCC----Ccccc
Confidence            4688899996  56888888889999999863 333333321   1221100     0 0000100 0000    01123


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ++||+|+..-=-|   .....+..+..++.+++.++.....
T Consensus        69 ~~~D~viv~vK~~---~~~~al~~l~~~l~~~t~vv~lQNG  106 (305)
T PRK05708         69 EPIHRLLLACKAY---DAEPAVASLAHRLAPGAELLLLQNG  106 (305)
T ss_pred             cccCEEEEECCHH---hHHHHHHHHHhhCCCCCEEEEEeCC
Confidence            5899987753222   3567788888889998876555443

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=80.14  E-value=12  Score=29.60  Aligned_cols=80  Identities=23%  Similarity=0.347  Sum_probs=46.7

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=.|+..|+   ++..++..|++|++++.++ .++.+...+...+             .++....+|..+...
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-------------~~~~~~~~D~~~~~~   73 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG-------------LSAHALAFDVTDHDA   73 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-------------ceEEEEEccCCCHHH
Confidence            4678999999974443   3344445699999998743 3343333332221             245667778766542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ...++.|+++.+...
T Consensus        74 ~~~~~~~~~~~~~~~d~li~~ag~   97 (255)
T PRK07523         74 VRAAIDAFEAEIGPIDILVNNAGM   97 (255)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCC
Confidence            21       112468998877544

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.06  E-value=12  Score=29.32  Aligned_cols=78  Identities=14%  Similarity=0.111  Sum_probs=44.4

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   +...++..|++|+++|.+. .++.+...+...+             .++.....|..+.+..
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~   69 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG-------------TEVRGYAANVTDEEDV   69 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEcCCCCHHHH
Confidence            468899999975543   3334445688999998743 3443333333221             2456666776543221


Q ss_pred             c-------ccCCCccEEEEecc
Q 029065          117 K-------AVAPPFDYIIGTDV  131 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~  131 (199)
                      .       ..-++.|+|+.+..
T Consensus        70 ~~~~~~~~~~~~~id~vi~~ag   91 (253)
T PRK08217         70 EATFAQIAEDFGQLNGLINNAG   91 (253)
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            0       11146899887654

>PRK09291 short chain dehydrogenase; Provisional

Probab=80.02  E-value=11  Score=29.67  Aligned_cols=76  Identities=21%  Similarity=0.240  Sum_probs=43.5

Q ss_pred             CCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           43 GKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        43 ~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +++||=.|++.|+   +...++..|++|++++.+ +..+..+......             ...+.+..+|+.+......
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~   68 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR-------------GLALRVEKLDLTDAIDRAQ   68 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcceEEEeeCCCHHHHHH
Confidence            4578888886553   333444568999988763 3333332222222             1246777788876543321


Q ss_pred             -cCCCccEEEEecc
Q 029065          119 -VAPPFDYIIGTDV  131 (199)
Q Consensus       119 -~~~~fD~Ii~~~~  131 (199)
                       .....|+++.+..
T Consensus        69 ~~~~~id~vi~~ag   82 (257)
T PRK09291         69 AAEWDVDVLLNNAG   82 (257)
T ss_pred             HhcCCCCEEEECCC
Confidence             2347899987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	1e-22
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	2e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	2e-04

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 91.4 bits (226), Expect = 1e-22
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 38  PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTD--QIEVLPLLKRNVEWNTSRISQMN 94
           P  + GK V ELGAG G+      L G + V+ TD    E+L  L+ N+  +T+  +  +
Sbjct: 75  PELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTA--NSCS 132

Query: 95  PGSDLLGSIQAVELDWGN---EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL--- 148
             +    S + V   WG+             F  ++  D++      + LL+++  L   
Sbjct: 133 SETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLAL 192

Query: 149 --SGPKTTILLGYEIRSTSVHEQMLQ 172
             + P    L+ +      + E+ L 
Sbjct: 193 PANDPTAVALVTFTHHRPHLAERDLA 218

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 34  GRFCPSKLKGKRVIELGAGCGVAGFGMA--LLGCNVITTD-QIEVLPLLKRNVEWNTSRI 90
                   +  R+ +LGAG G AG  +A  L    V   +   E+    +R++E      
Sbjct: 29  ASLVADD-RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLE------ 81

Query: 91  SQMNPGSDLLGSIQAVELDW--GNEDHIKAVAPP--FDYIIGT 129
             +   +     I+ +E D     +  ++A  P   F ++I  
Sbjct: 82  --LPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMN 122

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 14/98 (14%)

Query: 34  GRFCPSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTD-QIEVLPLLKRNVEWNTSRIS 91
            +F    ++  ++I+L +G G+    ++      ++  + Q  +  + KR+V +N     
Sbjct: 41  AKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN----- 95

Query: 92  QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 129
                  L   I+ +E D      +       D +   
Sbjct: 96  ------QLEDQIEIIEYDLKKITDLIP-KERADIVTCN 126

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.77
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.7
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.67
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.67
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.66
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.66
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.66
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.66
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.65
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.65
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.65
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.65
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.65
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.64
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.64
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.63
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.63
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.63
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.63
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.63
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.62
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.62
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.62
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.62
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.62
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.62
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.62
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.62
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.61
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.61
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.61
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.61
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.61
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.6
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.6
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.6
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.6
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.6
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.6
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.6
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.6
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.59
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.59
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.59
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.59
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.59
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.59
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.59
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.59
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.59
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.59
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.58
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.58
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.58
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.58
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.58
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.57
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.57
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.57
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.57
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.57
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.57
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.57
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.57
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.57
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.57
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.56
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.56
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.56
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.56
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.56
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.56
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.56
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.55
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.55
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.55
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.55
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.55
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.55
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.55
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.55
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.54
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.54
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.54
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.54
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.54
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.54
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.53
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.53
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.53
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.53
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.53
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.52
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.52
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.51
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.51
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.51
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.51
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.51
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.5
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.5
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.5
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.5
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.5
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.5
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.49
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.49
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.49
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.49
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.49
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.49
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.49
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.49
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.49
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.48
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.48
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.48
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.48
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.48
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.48
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.48
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.47
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.47
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.46
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.46
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.46
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.46
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.45
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.45
3ocj_A	305	Putative exported protein; structural genomics, PS	99.45
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.45
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.45
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.45
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.45
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.45
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.45
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.44
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.44
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.44
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.44
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.43
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.43
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.42
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.42
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.42
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.42
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.42
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.42
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.41
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.41
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.41
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.41
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.41
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.41
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.4
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.4
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.4
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.4
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.4
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.4
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.4
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.39
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.39
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.38
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.38
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.38
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.38
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.38
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.38
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.38
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.38
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.37
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.37
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.37
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.37
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.37
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.37
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.37
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.37
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.37
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.37
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.37
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.36
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.36
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.36
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.36
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.36
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.36
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.35
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.35
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.35
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.35
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.35
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.34
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.34
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.34
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.33
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.33
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.32
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.32
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.32
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.31
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.31
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.31
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.29
2o07_A	304	Spermidine synthase; structural genomics, structur	99.29
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.28
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.28
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.28
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.28
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.28
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.27
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.27
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.26
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.26
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.26
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.24
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.24
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.24
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.23
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.22
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.22
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.21
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.2
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.2
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.19
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.19
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.19
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.19
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.18
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.18
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.18
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.18
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.18
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.17
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.16
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.16
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.15
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.14
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.14
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.13
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.12
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.09
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.08
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.07
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.06
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.06
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.04
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.03
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.02
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.02
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.01
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.01
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.01
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.99
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.99
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.98
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.97
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.94
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.94
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.91
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.89
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.89
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.84
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.84
3lkd_A	542	Type I restriction-modification system methyltrans	98.8
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.79
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.78
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.69
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.69
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.69
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.62
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.59
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.59
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.59
3khk_A	544	Type I restriction-modification system methylation	98.55
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.54
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.44
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.36
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.26
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.23
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.21
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.09
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.02
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.92
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.9
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.89
3ufb_A	530	Type I restriction-modification system methyltran	97.85
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.84
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.75
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.73
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.66
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.6
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.58
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.52
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.35
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.23
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.2
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.2
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.19
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.0
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.96
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.6
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.29
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.17
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.91
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.9
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.71
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.62
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.45
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.13
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	94.93
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.8
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.71
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	94.53
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.35
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.32
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.13
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.08
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.02
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.99
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	93.9
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	93.84
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.83
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.8
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	93.8
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	93.71
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	93.63
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.61
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	93.46
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	93.45
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.31
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.09
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	93.04
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	92.86
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	92.59
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	92.56
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	92.47
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	92.26
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	92.16
3gms_A	340	Putative NADPH:quinone reductase; structural genom	92.13
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	92.06
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	92.0
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.97
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	91.92
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	91.92
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	91.89
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	91.88
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	91.85
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	91.85
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	91.82
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	91.82
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.79
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.76
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	91.74
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	91.71
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.6
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	91.58
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	91.53
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.51
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	91.47
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	91.47
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.46
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	91.44
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	91.44
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	91.42
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	91.41
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	91.34
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	91.28
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	91.13
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	91.11
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	91.05
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	90.96
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	90.86
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	90.85
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	90.75
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	90.57
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	90.56
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	90.44
3imf_A	257	Short chain dehydrogenase; structural genomics, in	90.44
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	90.37
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	90.3
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	90.28
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	90.24
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	90.22
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	90.2
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.17
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	90.16
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	90.15
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	90.13
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	90.13
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	90.09
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	90.05
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	89.98
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	89.97
4dqx_A	277	Probable oxidoreductase protein; structural genomi	89.94
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	89.93
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	89.89
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	89.78
3me5_A	482	Cytosine-specific methyltransferase; structural ge	89.77
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	89.77
1xhl_A	297	Short-chain dehydrogenase/reductase family member	89.61
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	89.57
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	89.51
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	89.28
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	89.28
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	89.22
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	89.03
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	88.97
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	88.92
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	88.91
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	88.79
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	88.69
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	88.67
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	88.29
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	88.27
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	88.09
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	88.05
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	88.01
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	88.0
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	87.97
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	87.76
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	87.73
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	87.71
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	87.64
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	87.56
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	87.53
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	87.47
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	87.43
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	87.4
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	87.28
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	87.28
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	87.28
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	87.25
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	87.24
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	87.23
1xq1_A	266	Putative tropinone reducatse; structural genomics,	87.18
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	87.17
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	87.14
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	86.94
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	86.89
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	86.84
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	86.65
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	86.52
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	86.48
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	86.46
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	86.36
3cxt_A	291	Dehydrogenase with different specificities; rossma	86.26
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	86.23
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	86.12
3rih_A	293	Short chain dehydrogenase or reductase; structural	86.07
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	86.02
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	86.01
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	85.96
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	85.92
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	85.9
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	85.86
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	85.7
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	85.65
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	85.54
1xkq_A	280	Short-chain reductase family member (5D234); parra	85.43
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	85.34
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	85.3
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	84.87
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	84.85
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	84.82
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	84.74
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	84.69
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	84.58
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	84.55
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	84.49
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	84.36
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	84.36
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	84.29
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	84.2
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	84.11
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	84.07
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	84.04
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	83.96
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	83.86
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	83.84
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	83.76
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	83.67
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	83.57
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	83.42
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	83.4
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	83.26
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	83.2
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	82.88
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	82.88
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	82.87
1spx_A	278	Short-chain reductase family member (5L265); paral	82.78
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	82.76
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	82.68
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	82.63
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	82.59
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	82.58
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	82.41
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	82.3

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.77  E-value=1.3e-18  Score=141.95  Aligned_cols=154  Identities=19%  Similarity=0.282  Sum_probs=104.5

Q ss_pred             CCCCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeec-hh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           38 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~-~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ....++++|||||||+|.+++.+++.|+ +|+++|+ +. +++.+++|+..|........  .....++++..++|++..
T Consensus        75 ~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~--~~~~~~v~~~~~~~~~~~  152 (281)
T 3bzb_A           75 PELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSE--TVKRASPKVVPYRWGDSP  152 (281)
T ss_dssp             GGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC------------CCCEEEECCTTSCT
T ss_pred             chhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccc--cCCCCCeEEEEecCCCcc
Confidence            3345788999999999999999999988 7999999 55 99999999954421000000  000136888888998643


Q ss_pred             cccc---cCCCccEEEEeccccCCcChHHHHHHHHHhcC---C--CcEEEEEEEecChh---HHHHHHHHHH-hC-CeEE
Q 029065          115 HIKA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG---P--KTTILLGYEIRSTS---VHEQMLQMWK-SN-FNVK  181 (199)
Q Consensus       115 ~~~~---~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~---~--~g~i~i~~~~~~~~---~~~~~~~~~~-~~-~~v~  181 (199)
                      ....   ..++||+|++++++|+...+..+++.+.++|+   |  ||.+++....+...   ....|++.+. .+ |+++
T Consensus       153 ~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~~l~~~G~f~v~  232 (281)
T 3bzb_A          153 DSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFRLVNADGALIAE  232 (281)
T ss_dssp             HHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHHHHHHSTTEEEE
T ss_pred             HHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHHHHHhcCCEEEE
Confidence            2111   25689999999999999999999999999999   9  99988876654321   1245656554 57 9998


Q ss_pred             EecCC-CcCcccC
Q 029065          182 LVPKA-KESTMWG  193 (199)
Q Consensus       182 ~~~~~-~~~~~~~  193 (199)
                      .+... .....|.
T Consensus       233 ~~~~~~~~~~~f~  245 (281)
T 3bzb_A          233 PWLSPLQMDPMFP  245 (281)
T ss_dssp             EEECCC-------
T ss_pred             Eeccccccccccc
Confidence            77433 2333443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.70  E-value=3.3e-16  Score=123.14  Aligned_cols=127  Identities=23%  Similarity=0.333  Sum_probs=96.6

Q ss_pred             CCCcEEEeCCC-cChHHHHHHhh-CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAG-CGVAGFGMALL-GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG-~G~~sl~la~~-g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+||| +|..++.+++. +.+|+++|++ .+++.|++|+..++.             ++++...|+......  
T Consensus        55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~v~~~~~d~~~~~~~--  119 (230)
T 3evz_A           55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-------------NVRLVKSNGGIIKGV--  119 (230)
T ss_dssp             SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-------------CCEEEECSSCSSTTT--
T ss_pred             CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-------------CcEEEeCCchhhhhc--
Confidence            57899999999 99999999988 8899999995 499999999988852             678888886433222  


Q ss_pred             cCCCccEEEEeccccCCcC-------------------hHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCC
Q 029065          119 VAPPFDYIIGTDVVYAEHL-------------------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNF  178 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~-------------------~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~  178 (199)
                      ..++||+|+++++++....                   +..+++.+.++|+|||.+++..+.+.. ....+.+.+ ..+|
T Consensus       120 ~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~l~~~g~  198 (230)
T 3evz_A          120 VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEK-LLNVIKERGIKLGY  198 (230)
T ss_dssp             CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHH-HHHHHHHHHHHTTC
T ss_pred             ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHh-HHHHHHHHHHHcCC
Confidence            2478999999988765332                   478999999999999999998775532 234455555 3478


Q ss_pred             eEEEec
Q 029065          179 NVKLVP  184 (199)
Q Consensus       179 ~v~~~~  184 (199)
                      .++.+.
T Consensus       199 ~~~~~~  204 (230)
T 3evz_A          199 SVKDIK  204 (230)
T ss_dssp             EEEEEE
T ss_pred             ceEEEE
Confidence            877654

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.67  E-value=1.1e-16  Score=135.30  Aligned_cols=106  Identities=18%  Similarity=0.222  Sum_probs=89.1

Q ss_pred             cCCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           36 FCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        36 ~~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      .|...++|++|||||||+|++++++|+.|++ |+++|.+++++.|++++..|++           ..+|++.+.+..+.+
T Consensus        77 ~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~-----------~~~i~~i~~~~~~~~  145 (376)
T 4hc4_A           77 RNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGL-----------EDRVHVLPGPVETVE  145 (376)
T ss_dssp             TTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC
T ss_pred             hCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCC-----------CceEEEEeeeeeeec
Confidence            3667789999999999999999999999986 9999998888999999999975           457999988776543


Q ss_pred             cccccCCCccEEEEe---ccccCCcChHHHHHHHHHhcCCCcEEE
Q 029065          115 HIKAVAPPFDYIIGT---DVVYAEHLLEPLLQTIFALSGPKTTIL  156 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~---~~~~~~~~~~~~l~~l~~~l~~~g~i~  156 (199)
                          ..++||+||+.   ..+.+...+..++....++|+|||.++
T Consensus       146 ----lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          146 ----LPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             ----CSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             ----CCccccEEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence                23689999984   445567789999999999999998754

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.67  E-value=5.8e-16  Score=124.42  Aligned_cols=151  Identities=14%  Similarity=0.175  Sum_probs=105.9

Q ss_pred             ecCcceeeccccccccCc--------cCCCCCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhh
Q 029065           18 VLGHQLQFSQEKNCRKGR--------FCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNT   87 (199)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~   87 (199)
                      .....+.+.|......+.        +.+..+++.+|||+|||+|.+++.++..+. +|+++|++ .+++.|++|+..++
T Consensus        17 ~~~~~~~i~q~~~~~~~~~d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~   96 (259)
T 3lpm_A           17 LLAENLRIIQSPSVFSFSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQ   96 (259)
T ss_dssp             ETTTTEEEEEBTTTBCCCHHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTT
T ss_pred             ccCCCEEEEeCCCCccCcHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCC
Confidence            456677777765432221        122112578999999999999999998876 79999995 59999999999886


Q ss_pred             hccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCC--------------------cChHHHHHHHHH
Q 029065           88 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--------------------HLLEPLLQTIFA  147 (199)
Q Consensus        88 ~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~--------------------~~~~~~l~~l~~  147 (199)
                      .           ..++++.+.|+.+.... ...++||+|+++++++..                    ..+..+++.+.+
T Consensus        97 ~-----------~~~v~~~~~D~~~~~~~-~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~  164 (259)
T 3lpm_A           97 L-----------EDQIEIIEYDLKKITDL-IPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAAS  164 (259)
T ss_dssp             C-----------TTTEEEECSCGGGGGGT-SCTTCEEEEEECCCC-----------------------HHHHHHHHHHHH
T ss_pred             C-----------cccEEEEECcHHHhhhh-hccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHH
Confidence            4           34689998887644311 225789999999988665                    235679999999


Q ss_pred             hcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEe
Q 029065          148 LSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  183 (199)
Q Consensus       148 ~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~  183 (199)
                      +|+|||.+++..+....   ..+...+. .+|.+..+
T Consensus       165 ~LkpgG~l~~~~~~~~~---~~~~~~l~~~~~~~~~~  198 (259)
T 3lpm_A          165 LLKQGGKANFVHRPERL---LDIIDIMRKYRLEPKRI  198 (259)
T ss_dssp             HEEEEEEEEEEECTTTH---HHHHHHHHHTTEEEEEE
T ss_pred             HccCCcEEEEEEcHHHH---HHHHHHHHHCCCceEEE
Confidence            99999999997654333   34444443 35665443

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.66  E-value=8.4e-16  Score=116.92  Aligned_cols=107  Identities=16%  Similarity=0.020  Sum_probs=80.9

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..++.+++.+.+|+++|+++ +++.|++++..++            ..++++...+......  ..
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~------------~~~v~~~~~~~~~l~~--~~   86 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLG------------IENTELILDGHENLDH--YV   86 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHT------------CCCEEEEESCGGGGGG--TC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC------------CCcEEEEeCcHHHHHh--hc
Confidence            3578999999999999999999888999999955 9999999998875            2467877755432211  22


Q ss_pred             CCCccEEEEeccccCC---------cChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~---------~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .++||+|+++..+...         .....+++.+.++|+|||.+++....
T Consensus        87 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           87 REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            5689999988433322         34567789999999999999887653

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.66  E-value=2.6e-16  Score=122.27  Aligned_cols=145  Identities=15%  Similarity=-0.021  Sum_probs=95.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..+..+++.|.+|+++|+++ |++.|+++..........-+.......++++.+.|..+..   ...
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~---~~~   98 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT---ARD   98 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST---HHH
T ss_pred             CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC---ccc
Confidence            578999999999999999999999999999965 9999987653210000000000000236788888876442   222


Q ss_pred             -CCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEecC------h---hHHHHHHHHHHhCCeEEEecCCCc
Q 029065          121 -PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS------T---SVHEQMLQMWKSNFNVKLVPKAKE  188 (199)
Q Consensus       121 -~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~~------~---~~~~~~~~~~~~~~~v~~~~~~~~  188 (199)
                       ++||+|++..++++..  ....+++.+.++|+|||.+++......      +   -..+.+.+.+..+|++..+.....
T Consensus        99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~~~el~~~~~~gf~i~~~~~~~~  178 (203)
T 1pjz_A           99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQDT  178 (203)
T ss_dssp             HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEEEEEEEESSC
T ss_pred             CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCCHHHHHHHhcCCcEEEEeccccc
Confidence             6899999988887643  456789999999999998544432211      0   013444455545888877665554


Q ss_pred             C
Q 029065          189 S  189 (199)
Q Consensus       189 ~  189 (199)
                      .
T Consensus       179 ~  179 (203)
T 1pjz_A          179 L  179 (203)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.66  E-value=6.8e-16  Score=118.11  Aligned_cols=110  Identities=16%  Similarity=0.202  Sum_probs=89.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++++|||+|||+|..++.++..++ +|+++|++ ++++.|++|+..++            ..++++.+.|+.+... ..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~------------~~~v~~~~~d~~~~~~-~~  109 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALG------------LSGATLRRGAVAAVVA-AG  109 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHT------------CSCEEEEESCHHHHHH-HC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcC------------CCceEEEEccHHHHHh-hc
Confidence            4788999999999999998887776 59999995 59999999998886            2478888888753321 11


Q ss_pred             cCCCccEEEEeccccCC-cChHHHHHHHHH--hcCCCcEEEEEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAE-HLLEPLLQTIFA--LSGPKTTILLGYEIRS  163 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~-~~~~~~l~~l~~--~l~~~g~i~i~~~~~~  163 (199)
                      ..++||+|++++++++. .....++..+.+  +|+|||.+++....+.
T Consensus       110 ~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          110 TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            25789999999886654 788999999999  9999999999887654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.66  E-value=4.8e-16  Score=125.56  Aligned_cols=107  Identities=16%  Similarity=0.236  Sum_probs=87.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh----CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL----GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~----g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      -+|.+|||||||+|..++.+++.    |++|+|+|+++ |++.|++++...+.           ..++++.+.|..+.. 
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~-----------~~~v~~~~~D~~~~~-  136 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDIA-  136 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC-----------SSCEEEEESCTTTCC-
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc-----------CceEEEeeccccccc-
Confidence            36789999999999999999875    56899999955 99999999876543           347888887775432 


Q ss_pred             ccccCCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          116 IKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                          .+.||+|+++.++++..  ....+++.+.++|+|||.+++++....
T Consensus       137 ----~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~  182 (261)
T 4gek_A          137 ----IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF  182 (261)
T ss_dssp             ----CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred             ----ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCC
Confidence                35799999999887754  456799999999999999999987654

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.65  E-value=2.1e-15  Score=115.38  Aligned_cols=104  Identities=19%  Similarity=0.253  Sum_probs=87.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..+..++..|.+|+++|+++ +++.+++++..++            ..++++...|+....   . 
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~------------~~~~~~~~~d~~~~~---~-   94 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIEN------------LDNLHTRVVDLNNLT---F-   94 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT------------CTTEEEEECCGGGCC---C-
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCC------------CCCcEEEEcchhhCC---C-
Confidence            3567999999999999999999899999999954 9999999887765            236788887775432   2 


Q ss_pred             CCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          120 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      .+.||+|+++.++++..  ....+++.+.++|+|||.+++...
T Consensus        95 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           95 DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            57899999999998865  889999999999999999877654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.65  E-value=1.4e-15  Score=121.71  Aligned_cols=106  Identities=14%  Similarity=0.106  Sum_probs=90.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||||||+|..+..++..+.+|+++|+++ +++.+++++...+            ..++.+...|....   +..+
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~------------~~~v~~~~~d~~~l---~~~~  101 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG------------HQQVEYVQGDAEQM---PFTD  101 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT------------CCSEEEEECCC-CC---CSCT
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcC------------CCceEEEEecHHhC---CCCC
Confidence            578999999999999999999988999999954 9999999887765            23688888777543   2345


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      +.||+|+++.++++..+...++..+.++|+|||.+++.....
T Consensus       102 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~  143 (260)
T 1vl5_A          102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  143 (260)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence            789999999999999999999999999999999999986543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.65  E-value=1e-15  Score=121.90  Aligned_cols=106  Identities=17%  Similarity=0.104  Sum_probs=90.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++.+|||||||+|..+..++.. +.+|+++|+++ +++.+++++...+.           ..++++...|+.+..   .
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---~  100 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----------SERVHFIHNDAAGYV---A  100 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCCTTCC---C
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CcceEEEECChHhCC---c
Confidence            35789999999999999999876 77899999954 99999999887753           247899888876432   2


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                       .+.||+|++..++++..+...+++.+.++|+|||.+++..+.
T Consensus       101 -~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A          101 -NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             -SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             -CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCc
Confidence             578999999999999889999999999999999999998764

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.65  E-value=3.2e-15  Score=118.48  Aligned_cols=107  Identities=12%  Similarity=0.094  Sum_probs=91.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      -++.+|||+|||+|..+..++..+.+|+++|+++ +++.+++++..++            ..++.+...|+...   +..
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~------------~~~v~~~~~d~~~~---~~~   84 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKG------------VENVRFQQGTAESL---PFP   84 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHT------------CCSEEEEECBTTBC---CSC
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcC------------CCCeEEEecccccC---CCC
Confidence            3578999999999999999999999999999954 9999999987775            23688888777532   334


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .+.||+|+++.++++..++..++..+.++|+|||.+++.....
T Consensus        85 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           85 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             CCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence            5789999999999999999999999999999999999987653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.65  E-value=2.4e-15  Score=119.84  Aligned_cols=102  Identities=14%  Similarity=0.181  Sum_probs=86.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++++|||||||+|..+..++..|. +|+++|++ .+++.++++..               ..++++...|+...   +.
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~---~~  104 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---------------SPVVCYEQKAIEDI---AI  104 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---------------CTTEEEEECCGGGC---CC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---------------cCCeEEEEcchhhC---CC
Confidence            4688999999999999999999988 79999995 49998887754               12678888777533   23


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..++||+|+++.++++..+...+++.+.++|+|||.++++.+
T Consensus       105 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          105 EPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence            357899999999999999999999999999999999999754

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.64  E-value=1.4e-15  Score=123.31  Aligned_cols=108  Identities=21%  Similarity=0.230  Sum_probs=91.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||||||+|..+..++..|.+|+++|++ .+++.+++++...+.           ..++++...|+.....  ...
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--~~~  134 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGV-----------SDNMQFIHCAAQDVAS--HLE  134 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CC-----------GGGEEEEESCGGGTGG--GCS
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEEcCHHHhhh--hcC
Confidence            46799999999999999999999999999995 499999999877653           2478888888764431  335


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ++||+|+++.++++..+...+++.+.++|+|||.+++.....
T Consensus       135 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  176 (285)
T 4htf_A          135 TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNA  176 (285)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred             CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence            789999999999999999999999999999999999988643

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.64  E-value=2.8e-15  Score=116.10  Aligned_cols=105  Identities=16%  Similarity=0.156  Sum_probs=89.3

Q ss_pred             CcEEEeCCCcChHHHHHHhh-CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           44 KRVIELGAGCGVAGFGMALL-GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      .+|||+|||+|..+..++.. +.+|+++|++ .+++.+++++...+.           ..++++...|+.+.   +...+
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~---~~~~~  110 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL-----------NDRIQIVQGDVHNI---PIEDN  110 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECBTTBC---SSCTT
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc-----------cCceEEEEcCHHHC---CCCcc
Confidence            39999999999999999987 6689999995 599999999887753           34788888887543   23457


Q ss_pred             CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .||+|+++.++++..+...+++.+.++|+|||.+++.....
T Consensus       111 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A          111 YADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             cccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence            89999999999999999999999999999999999986543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.63  E-value=4.3e-15  Score=115.69  Aligned_cols=127  Identities=12%  Similarity=0.062  Sum_probs=99.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC---CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|..+..++..+   .+|+++|++ .+++.+++++..++.            .++++...|+...   .
T Consensus        37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~---~  101 (219)
T 3dh0_A           37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------------KNVEVLKSEENKI---P  101 (219)
T ss_dssp             TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------------TTEEEEECBTTBC---S
T ss_pred             CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEecccccC---C
Confidence            57899999999999999999876   689999995 599999999887752            3688888887543   2


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh----------HHHHHHHHHH-hCCeEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----------VHEQMLQMWK-SNFNVKLV  183 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~----------~~~~~~~~~~-~~~~v~~~  183 (199)
                      ...+.||+|+++.++++..+...+++.+.++|+|||.+++........          ..+.+.+.+. .+|++..+
T Consensus       102 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  178 (219)
T 3dh0_A          102 LPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV  178 (219)
T ss_dssp             SCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence            335789999999999999999999999999999999999987543210          1344555553 47876544

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.63  E-value=5.2e-15  Score=121.84  Aligned_cols=107  Identities=7%  Similarity=-0.109  Sum_probs=91.2

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++.+|||+|||+|..+..++.. +++|+++|++ .+++.|++++..++.           ..++++...|+.+.   +.
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---~~  181 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI-----------DDHVRSRVCNMLDT---PF  181 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC---CC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCceEEEECChhcC---CC
Confidence            45789999999999999999987 8999999995 599999999988764           34789988887643   23


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..+.||+|+++.++++. +...+++.+.++|+|||.+++.....
T Consensus       182 ~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          182 DKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             CTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccc
Confidence            35789999999999888 49999999999999999999888654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.63  E-value=4.4e-15  Score=114.40  Aligned_cols=124  Identities=11%  Similarity=0.076  Sum_probs=96.1

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      +.+|||+|||+|..+..++..|.+|+++|++. +++.++++.                 .++.+...|+.+.   +...+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~---~~~~~  101 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH-----------------PSVTFHHGTITDL---SDSPK  101 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC-----------------TTSEEECCCGGGG---GGSCC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-----------------CCCeEEeCccccc---ccCCC
Confidence            78999999999999999999999999999954 888888761                 2567777776532   33457


Q ss_pred             CccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEecCh-------------hHHHHHHHHHH-hCCeEEEecC
Q 029065          122 PFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVKLVPK  185 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~~~-------------~~~~~~~~~~~-~~~~v~~~~~  185 (199)
                      .||+|++..++++..  +...+++.+.++|+|||.+++.......             ...+.+.+.+. .||++..+..
T Consensus       102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  181 (203)
T 3h2b_A          102 RWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW  181 (203)
T ss_dssp             CEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             CeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence            899999999998864  8999999999999999999998865431             11344555553 5788866554


Q ss_pred             C
Q 029065          186 A  186 (199)
Q Consensus       186 ~  186 (199)
                      .
T Consensus       182 ~  182 (203)
T 3h2b_A          182 D  182 (203)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.63  E-value=3.5e-15  Score=118.93  Aligned_cols=107  Identities=11%  Similarity=0.089  Sum_probs=90.5

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ..++.+|||||||+|..+..++..+. +|+++|+++ +++.+++++..++.           ..++++...|+...   +
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~---~  109 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-----------ADRVKGITGSMDNL---P  109 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC---S
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCceEEEECChhhC---C
Confidence            34577999999999999999998865 899999954 99999999888764           33589988887543   2


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ...++||+|+++.++++. +...+++.+.++|+|||.+++..+.
T Consensus       110 ~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A          110 FQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             SCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence            335789999999999888 7899999999999999999999864

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.63  E-value=4e-15  Score=121.28  Aligned_cols=109  Identities=12%  Similarity=0.066  Sum_probs=92.4

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ..++.+|||+|||+|..+..++.. +++|+++|+++ +++.+++++...+.           ..++++...|+...   +
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~---~  145 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----------ADNITVKYGSFLEI---P  145 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----------TTTEEEEECCTTSC---S
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CcceEEEEcCcccC---C
Confidence            346789999999999999999976 88999999955 99999998877653           34688888887543   3


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ...+.||+|++..++++..+...+++.+.++|+|||.+++..+..
T Consensus       146 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          146 CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            345789999999999998899999999999999999999998753

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.62  E-value=2.3e-15  Score=119.49  Aligned_cols=127  Identities=12%  Similarity=0.086  Sum_probs=93.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHh--hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~--~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||||||+|..++.++.  .+.+|+++|+++ +++.+++++..++.            .++++.+.|+.+......
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~~~~  137 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------------ENTTFCHDRAETFGQRKD  137 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------------SSEEEEESCHHHHTTCTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCEEEEeccHHHhccccc
Confidence            578999999999999999994  467899999955 99999999988763            368888877643221011


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP  184 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~  184 (199)
                      ..++||+|++...    ..+..+++.+.++|+|||.+++.......+....+.+.+. .+|.+..+.
T Consensus       138 ~~~~fD~V~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~  200 (240)
T 1xdz_A          138 VRESYDIVTARAV----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIH  200 (240)
T ss_dssp             TTTCEEEEEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             ccCCccEEEEecc----CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEEE
Confidence            1468999999763    6789999999999999999988754444443444555543 467665543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.62  E-value=7.4e-15  Score=111.51  Aligned_cols=109  Identities=20%  Similarity=0.239  Sum_probs=89.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..+..++..+.+|+++|++ .+++.+++++..++..          ..++++...|+....    ..
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~d~~~~~----~~  117 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLD----------NYDIRVVHSDLYENV----KD  117 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCT----------TSCEEEEECSTTTTC----TT
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCC----------ccceEEEECchhccc----cc
Confidence            67899999999999999999888899999995 5999999998877531          013888888876432    25


Q ss_pred             CCccEEEEeccccC-CcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          121 PPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~-~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      +.||+|+++.++++ ......+++.+.++|+|||.+++.......
T Consensus       118 ~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  162 (194)
T 1dus_A          118 RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQG  162 (194)
T ss_dssp             SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred             CCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence            68999999988766 467889999999999999999999887543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.62  E-value=1.8e-14  Score=111.26  Aligned_cols=120  Identities=13%  Similarity=0.112  Sum_probs=92.2

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .++.+|||+|||+|..++.+++.+  .+|+++|++ ++++.+++++..++            ..++++...|+.+..   
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------------~~~v~~~~~d~~~~~---  103 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV------------ARNVTLVEAFAPEGL---  103 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHT------------CTTEEEEECCTTTTC---
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC------------CCcEEEEeCChhhhh---
Confidence            357899999999999999999887  679999995 59999999998876            347888887764332   


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV  180 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v  180 (199)
                      ...+.||+|+++.++.   ....+++.+.++|+|||.+++.......  .+.+.+.+. .+|.+
T Consensus       104 ~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~l~~~g~~~  162 (204)
T 3e05_A          104 DDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLDT--LTKAVEFLEDHGYMV  162 (204)
T ss_dssp             TTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHHH--HHHHHHHHHHTTCEE
T ss_pred             hcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEeccccc--HHHHHHHHHHCCCce
Confidence            1236799999987664   7889999999999999999997665322  344444443 45543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.62  E-value=3.4e-15  Score=117.74  Aligned_cols=131  Identities=16%  Similarity=0.070  Sum_probs=100.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +++.+|||+|||+|..+..++..+.+|+++|+++ +++.+++++...+.           ..++++...|+....    .
T Consensus        65 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~----~  129 (235)
T 3lcc_A           65 LPLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPK-----------AEYFSFVKEDVFTWR----P  129 (235)
T ss_dssp             SCCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGG-----------GGGEEEECCCTTTCC----C
T ss_pred             CCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCC-----------CcceEEEECchhcCC----C
Confidence            3456999999999999999999899999999955 99999998765432           346888888876532    2


Q ss_pred             CCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEecCh--------hHHHHHHHHHH-hCCeEEEecCC
Q 029065          120 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRST--------SVHEQMLQMWK-SNFNVKLVPKA  186 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~~~--------~~~~~~~~~~~-~~~~v~~~~~~  186 (199)
                      .++||+|+++.++++..  ....+++.+.++|+|||.+++.......        .....+.+.+. .+|++..+...
T Consensus       130 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  207 (235)
T 3lcc_A          130 TELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEEN  207 (235)
T ss_dssp             SSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred             CCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence            45899999999998866  8999999999999999998886643211        01345555554 47888665543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.62  E-value=2.1e-15  Score=120.93  Aligned_cols=128  Identities=13%  Similarity=0.090  Sum_probs=94.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||||||+|.+++.++..  +.+|+++|+++ +++.+++|+..++.            .++++.+.|+.+......
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l------------~~v~~~~~d~~~~~~~~~  147 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL------------KGARALWGRAEVLAREAG  147 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------------SSEEEEECCHHHHTTSTT
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------------CceEEEECcHHHhhcccc
Confidence            5789999999999999999976  56899999955 99999999988863            368888887753321111


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  185 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~  185 (199)
                      ..++||+|++..+    ..+..+++.+.++|+|||.+++.......+....+...+. .+|.+..+..
T Consensus       148 ~~~~fD~I~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~~  211 (249)
T 3g89_A          148 HREAYARAVARAV----APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVLA  211 (249)
T ss_dssp             TTTCEEEEEEESS----CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEEE
T ss_pred             cCCCceEEEECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEEE
Confidence            2468999999753    5778999999999999999887664443333334444432 3666655443

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.62  E-value=1.2e-15  Score=118.73  Aligned_cols=102  Identities=15%  Similarity=0.153  Sum_probs=86.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..+..++..+.+|+++|+++ +++.+++++...              .++++...|+.+..    ..
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~~----~~  112 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW--------------SHISWAATDILQFS----TA  112 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC--------------SSEEEEECCTTTCC----CS
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccC--------------CCeEEEEcchhhCC----CC
Confidence            567999999999999999999998999999954 999998876443              26888888876543    35


Q ss_pred             CCccEEEEeccccCCcCh---HHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAEHLL---EPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~---~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ++||+|+++.++++..+.   ..+++.+.++|+|||.++++.+.
T Consensus       113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            789999999999987766   56799999999999999998754

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.62  E-value=6.4e-15  Score=120.61  Aligned_cols=106  Identities=16%  Similarity=0.139  Sum_probs=89.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      -++.+|||||||+|..+..+++. |++|+++|+++ +++.+++++..++.           ..++++...|+.+.     
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~-----  134 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----------PRRKEVRIQGWEEF-----  134 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC-----------SSCEEEEECCGGGC-----
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECCHHHc-----
Confidence            35779999999999999999987 88999999954 99999999887753           34788888887532     


Q ss_pred             cCCCccEEEEeccccCCc---------ChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~---------~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                       .+.||+|+++.++.+..         ....+++.+.++|+|||.+++......
T Consensus       135 -~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          135 -DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             -CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             -CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence             57899999999998874         448999999999999999999887543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.62  E-value=3.4e-15  Score=120.02  Aligned_cols=107  Identities=12%  Similarity=0.069  Sum_probs=90.9

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ..++.+|||||||+|..+..++..+. +|+++|+++ +++.+++++...+.           ..++++...|+.+..   
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---  109 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL-----------QNRVTGIVGSMDDLP---  109 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSCC---
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CcCcEEEEcChhhCC---
Confidence            34678999999999999999998855 899999954 99999999887753           346899998885432   


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ...++||+|+++.++++. ++..+++.+.++|+|||.+++....
T Consensus       110 ~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          110 FRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             CCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            335789999999999888 8999999999999999999998865

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.61  E-value=5.7e-15  Score=118.80  Aligned_cols=108  Identities=13%  Similarity=0.083  Sum_probs=91.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++.+|||||||+|..+..+++. +.+|+++|+++ +++.+++++...+.           ..++.+...|+...   +.
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~---~~  125 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL-----------ANRVTFSYADAMDL---PF  125 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC---CS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CcceEEEECccccC---CC
Confidence            35789999999999999999874 78899999955 99999998877653           34688888877543   23


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..++||+|++..++++..+...+++.+.++|+|||.+++.....
T Consensus       126 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  169 (273)
T 3bus_A          126 EDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVL  169 (273)
T ss_dssp             CTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             CCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence            35789999999999999999999999999999999999988653

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.61  E-value=6.2e-15  Score=118.44  Aligned_cols=140  Identities=13%  Similarity=0.048  Sum_probs=93.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCC------CCCCcEEEEEeeeCCCc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGS------DLLGSIQAVELDWGNED  114 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~d~~~~~  114 (199)
                      ++.+|||+|||+|..+..+|..|.+|+|+|+++ +++.|+++......... ....+      ....++++.+.|+.+..
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~D~~~l~  146 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEP-LAEIAGAKVFKSSSGSISLYCCSIFDLP  146 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEE-CTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhccccccccc-ccccccccccccCCCceEEEECccccCC
Confidence            578999999999999999999999999999965 99988765421000000 00000      01246888888875432


Q ss_pred             ccccc-CCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEe-cC-----h---hHHHHHHHHHHhCCeEEE
Q 029065          115 HIKAV-APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI-RS-----T---SVHEQMLQMWKSNFNVKL  182 (199)
Q Consensus       115 ~~~~~-~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~-~~-----~---~~~~~~~~~~~~~~~v~~  182 (199)
                         .. .++||+|++..++++.  .....+++.+.++|+|||.+++.... ..     +   ...+.+.+.+...|++..
T Consensus       147 ---~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~~f~v~~  223 (252)
T 2gb4_A          147 ---RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGTKCSMQC  223 (252)
T ss_dssp             ---GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTTTEEEEE
T ss_pred             ---cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhCCeEEEE
Confidence               22 2789999998887663  45678999999999999998654322 10     0   113455555655688866


Q ss_pred             ecC
Q 029065          183 VPK  185 (199)
Q Consensus       183 ~~~  185 (199)
                      +..
T Consensus       224 ~~~  226 (252)
T 2gb4_A          224 LEE  226 (252)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            553

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.61  E-value=6.3e-15  Score=114.31  Aligned_cols=122  Identities=16%  Similarity=0.225  Sum_probs=93.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..+..++..|.+|+++|+++ +++.+++++  +                +.+...|+...   . ..
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~--~----------------~~~~~~d~~~~---~-~~  100 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL--G----------------RPVRTMLFHQL---D-AI  100 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--T----------------SCCEECCGGGC---C-CC
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc--C----------------CceEEeeeccC---C-CC
Confidence            578999999999999999999999999999954 999998876  1                23344555432   2 46


Q ss_pred             CCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEecChh------------HHHHHHHHHH-hC-CeEEEec
Q 029065          121 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRSTS------------VHEQMLQMWK-SN-FNVKLVP  184 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~~~~------------~~~~~~~~~~-~~-~~v~~~~  184 (199)
                      +.||+|+++.++++..  +...+++.+.++|+|||.++++.+.....            ..+.+.+.+. .| |++..+.
T Consensus       101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~  180 (211)
T 3e23_A          101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE  180 (211)
T ss_dssp             SCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred             CcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence            7899999999998876  88899999999999999999987654311            1344555553 58 8876654


Q ss_pred             C
Q 029065          185 K  185 (199)
Q Consensus       185 ~  185 (199)
                      .
T Consensus       181 ~  181 (211)
T 3e23_A          181 S  181 (211)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.61  E-value=3.4e-14  Score=110.42  Aligned_cols=125  Identities=15%  Similarity=0.161  Sum_probs=93.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|.+++.+++.+.+|+++|++ ++++.|++++..++.           ..++++...|..+.  . ..
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~--~-~~  119 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGL-----------SPRMRAVQGTAPAA--L-AD  119 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCTTGG--G-TT
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCCEEEEeCchhhh--c-cc
Confidence            357899999999999999999988899999995 599999999988763           22688888776532  1 12


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEecCC
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKA  186 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~  186 (199)
                      .+.||+|++...+    ... +++.+.++|+|||.+++.......  ...+.+.+. .++++..+...
T Consensus       120 ~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~~--~~~~~~~l~~~g~~i~~i~~~  180 (204)
T 3njr_A          120 LPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLES--ETLLTQLHARHGGQLLRIDIA  180 (204)
T ss_dssp             SCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHHH--HHHHHHHHHHHCSEEEEEEEE
T ss_pred             CCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCccc--HHHHHHHHHhCCCcEEEEEee
Confidence            3579999987643    455 999999999999999887764322  344444443 35777665543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.61  E-value=3.4e-14  Score=110.72  Aligned_cols=108  Identities=18%  Similarity=0.118  Sum_probs=83.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||||||+|..+..++..+  .+|+++|+++ +++.+++++..++...       ....++++...|+...   ..
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-------~~~~~v~~~~~d~~~~---~~   98 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPE-------MQRKRISLFQSSLVYR---DK   98 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCH-------HHHTTEEEEECCSSSC---CG
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhcccc-------ccCcceEEEeCccccc---cc
Confidence            56899999999999999999876  5799999955 9999999887654210       0012688888777432   23


Q ss_pred             cCCCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..++||+|+++.++++...  ...+++.+.++|+|||.+++..
T Consensus        99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A           99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            3578999999999998774  4799999999999999655443

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.60  E-value=4.3e-15  Score=117.15  Aligned_cols=102  Identities=14%  Similarity=0.096  Sum_probs=86.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||||||+|..+..++..+.+|+++|+++ +++.|+++...                ++++...|..+.    ..
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~----------------~v~~~~~d~~~~----~~  100 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD----------------GITYIHSRFEDA----QL  100 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS----------------CEEEEESCGGGC----CC
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC----------------CeEEEEccHHHc----Cc
Confidence            4677999999999999999999999999999955 88888776321                467777776533    23


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHH-HhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIF-ALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~-~~l~~~g~i~i~~~~~  162 (199)
                      +++||+|++..++++..+...+++.+. ++|+|||.+++..+..
T Consensus       101 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~  144 (250)
T 2p7i_A          101 PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA  144 (250)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             CCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence            578999999999999999999999999 9999999999998764

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.60  E-value=6.8e-15  Score=118.75  Aligned_cols=105  Identities=15%  Similarity=0.120  Sum_probs=81.9

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc--cc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--IK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--~~  117 (199)
                      .++.+|||||||+|.+++.+++.|++|+++|+++ |++.|++++..+                  ....++.+...  ..
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~------------------~v~~~~~~~~~~~~~  105 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR------------------CVTIDLLDITAEIPK  105 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS------------------CCEEEECCTTSCCCG
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc------------------cceeeeeeccccccc
Confidence            4678999999999999999999999999999955 999998876432                  12344443332  12


Q ss_pred             ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          118 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      ...++||+|+++.++++  ......++..+.++| |||.++++.+....
T Consensus       106 ~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~  153 (261)
T 3iv6_A          106 ELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFY  153 (261)
T ss_dssp             GGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCC
T ss_pred             ccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcc
Confidence            23568999999998876  346778999999999 99999999886433

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.60  E-value=5.6e-15  Score=119.87  Aligned_cols=102  Identities=20%  Similarity=0.282  Sum_probs=86.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..+..++..|.+|+++|+++ +++.+++++..++.             ++++...|+....   . .
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~---~-~  182 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL-------------NISTALYDINAAN---I-Q  182 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CEEEEECCGGGCC---C-C
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEecccccc---c-c
Confidence            678999999999999999999999999999955 99999999887752             6788887775432   1 6


Q ss_pred             CCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          121 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ++||+|+++.++++.  .....+++.+.++|+|||.+++...
T Consensus       183 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          183 ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             SCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            789999999999875  5577999999999999999877664

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.60  E-value=2.5e-14  Score=111.47  Aligned_cols=109  Identities=16%  Similarity=0.140  Sum_probs=83.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||||||+|..+..++..+  .+|+++|+++ +++.+++++..++...       ....++++...|+...   ..
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-------~~~~~v~~~~~d~~~~---~~   98 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPR-------NQWERLQLIQGALTYQ---DK   98 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCH-------HHHTTEEEEECCTTSC---CG
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCc-------ccCcceEEEeCCcccc---cc
Confidence            46799999999999999999876  4799999954 9999999876554210       0012688888776422   23


Q ss_pred             cCCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..++||+|+++.++++..  ....+++.+.++|+|||.+++...
T Consensus        99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A           99 RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            346899999999999876  448999999999999996665543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.60  E-value=3.7e-15  Score=120.08  Aligned_cols=125  Identities=21%  Similarity=0.225  Sum_probs=92.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHHH---hhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEW---NTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ++.+|||+|||+|.+++.++..+  .+|+++|++ .+++.|++|+..   ++.           .+++++.+.|+.+...
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l-----------~~~v~~~~~D~~~~~~  104 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF-----------SARIEVLEADVTLRAK  104 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT-----------GGGEEEEECCTTCCHH
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC-----------cceEEEEeCCHHHHhh
Confidence            56799999999999999999875  579999995 599999999877   643           2368999988875521


Q ss_pred             c----cccCCCccEEEEeccccCC------------------cChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHH
Q 029065          116 I----KAVAPPFDYIIGTDVVYAE------------------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM  173 (199)
Q Consensus       116 ~----~~~~~~fD~Ii~~~~~~~~------------------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~  173 (199)
                      .    ....+.||+|+++++++..                  ..+..+++.+.++|+|+|.+++..+...   ...+...
T Consensus       105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~  181 (260)
T 2ozv_A          105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQS---VAEIIAA  181 (260)
T ss_dssp             HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGG---HHHHHHH
T ss_pred             hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHH---HHHHHHH
Confidence            0    1225689999999887654                  2478899999999999999998776542   3455555


Q ss_pred             HHhCCeE
Q 029065          174 WKSNFNV  180 (199)
Q Consensus       174 ~~~~~~v  180 (199)
                      +...|..
T Consensus       182 l~~~~~~  188 (260)
T 2ozv_A          182 CGSRFGG  188 (260)
T ss_dssp             HTTTEEE
T ss_pred             HHhcCCc
Confidence            5544543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.60  E-value=9.4e-15  Score=123.97  Aligned_cols=106  Identities=21%  Similarity=0.282  Sum_probs=88.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|.+++.+++.+++|+++|+++ +++.+++|+..++.             .+++...|+....   ..
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~-------------~v~~~~~D~~~~~---~~  295 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANAL-------------KAQALHSDVDEAL---TE  295 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTC-------------CCEEEECSTTTTS---CT
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC-------------CeEEEEcchhhcc---cc
Confidence            4678999999999999999999999999999955 99999999988863             3677777765432   22


Q ss_pred             CCCccEEEEeccccC-----CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYA-----EHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~-----~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .++||+|++++++++     ......++..+.++|+|||.++++....
T Consensus       296 ~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          296 EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            468999999999877     4567889999999999999999986543

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.60  E-value=8.1e-15  Score=114.81  Aligned_cols=110  Identities=13%  Similarity=0.150  Sum_probs=88.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..+..++..+.+|+++|+++ +++.+++++...+..       .....++.+...|....   ....
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~d~~~~---~~~~   99 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLN-------QKTGGKAEFKVENASSL---SFHD   99 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCC-------SSSSCEEEEEECCTTSC---CSCT
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCc-------cccCcceEEEEeccccc---CCCC
Confidence            578999999999999999999999999999954 999999887655421       01123577777776533   2336


Q ss_pred             CCccEEEEeccccCCcChH---HHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAEHLLE---PLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~---~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +.||+|+++.++++..+..   .+++.+.++|+|||.+++....
T Consensus       100 ~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (235)
T 3sm3_A          100 SSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG  143 (235)
T ss_dssp             TCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             CceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence            7899999999999987777   8999999999999999998764

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.60  E-value=4.6e-15  Score=115.08  Aligned_cols=106  Identities=14%  Similarity=0.135  Sum_probs=85.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||+|||+|..++.++..++ +|+++|+++ +++.|++|+..++            ..++++.+.|+...  ....
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~------------~~~v~~~~~D~~~~--~~~~  119 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLK------------AGNARVVNSNAMSF--LAQK  119 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT------------CCSEEEECSCHHHH--HSSC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcC------------CCcEEEEECCHHHH--Hhhc
Confidence            678999999999999998887775 799999954 9999999998875            24688888776432  1223


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHH--hcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~--~l~~~g~i~i~~~~~  162 (199)
                      .+.||+|+++++ |+......+++.+.+  +|+|||.+++.....
T Consensus       120 ~~~fD~V~~~~p-~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          120 GTPHNIVFVDPP-FRRGLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             CCCEEEEEECCS-SSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             CCCCCEEEECCC-CCCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            468999999877 667778888988876  499999999888754

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.59  E-value=3.1e-15  Score=115.94  Aligned_cols=110  Identities=16%  Similarity=0.132  Sum_probs=85.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||+|||+|..++.++..++ +|+++|++ .+++.|++|+..++..          ..++++...|..+... ...
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----------~~~v~~~~~d~~~~~~-~~~  121 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----------SEQAEVINQSSLDFLK-QPQ  121 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----------TTTEEEECSCHHHHTT-SCC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC----------ccceEEEECCHHHHHH-hhc
Confidence            578999999999999998777775 79999995 4999999999887630          0478888877643211 011


Q ss_pred             CCC-ccEEEEeccccCCcChHHHHHHH--HHhcCCCcEEEEEEEecC
Q 029065          120 APP-FDYIIGTDVVYAEHLLEPLLQTI--FALSGPKTTILLGYEIRS  163 (199)
Q Consensus       120 ~~~-fD~Ii~~~~~~~~~~~~~~l~~l--~~~l~~~g~i~i~~~~~~  163 (199)
                      .+. ||+|+++++ |+......++..+  .++|+|||.+++......
T Consensus       122 ~~~~fD~I~~~~~-~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          122 NQPHFDVVFLDPP-FHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             SSCCEEEEEECCC-SSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             cCCCCCEEEECCC-CCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            457 999999888 5677788889888  557999999999887654

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.59  E-value=1.5e-14  Score=111.40  Aligned_cols=129  Identities=18%  Similarity=0.176  Sum_probs=96.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++ +|||+|||+|..+..++..|.+|+++|+++ +++.++++...++.             ++.+...|+...   ....
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~---~~~~   92 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV-------------KITTVQSNLADF---DIVA   92 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC-------------CEEEECCBTTTB---SCCT
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC-------------ceEEEEcChhhc---CCCc
Confidence            45 999999999999999999999999999954 99999998877642             577777776543   2235


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh--------------HHHHHHHHHHhCCeEEEecCC
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS--------------VHEQMLQMWKSNFNVKLVPKA  186 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~  186 (199)
                      +.||+|+++...+.......+++.+.++|+|||.+++........              ....+.+.+. +|++..+...
T Consensus        93 ~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-Gf~v~~~~~~  171 (202)
T 2kw5_A           93 DAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP-SLNWLIANNL  171 (202)
T ss_dssp             TTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS-SSCEEEEEEE
T ss_pred             CCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc-CceEEEEEEE
Confidence            689999997543434678899999999999999999987643211              1334555555 8988766554


Q ss_pred             Cc
Q 029065          187 KE  188 (199)
Q Consensus       187 ~~  188 (199)
                      ..
T Consensus       172 ~~  173 (202)
T 2kw5_A          172 ER  173 (202)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.59  E-value=1.3e-14  Score=117.70  Aligned_cols=105  Identities=15%  Similarity=0.184  Sum_probs=88.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHH-hhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la-~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++.+|||||||+|..+..++ ..|.+|+++|++ .+++.+++++...+.           ..++++...|+...     
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~-----  126 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----------LRSKRVLLAGWEQF-----  126 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----------CSCEEEEESCGGGC-----
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhC-----
Confidence            457899999999999999998 568899999995 499999998876542           34688888777422     


Q ss_pred             cCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                       .++||+|++..++++.  .+...+++.+.++|+|||.+++.....
T Consensus       127 -~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          127 -DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             -CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             -CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence             1789999999999886  789999999999999999999988764

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.59  E-value=2.2e-15  Score=112.65  Aligned_cols=108  Identities=21%  Similarity=0.175  Sum_probs=85.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-ccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~  119 (199)
                      ++++|||+|||+|..++.++..+.+|+++|++ .+++.+++++..++            . ++++.+.|+.+.. .....
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~------------~-~~~~~~~d~~~~~~~~~~~  107 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTG------------L-GARVVALPVEVFLPEAKAQ  107 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHT------------C-CCEEECSCHHHHHHHHHHT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcC------------C-ceEEEeccHHHHHHhhhcc
Confidence            67899999999999999999999999999995 59999999998775            2 5677777765321 11111


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHH--HhcCCCcEEEEEEEecCh
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIF--ALSGPKTTILLGYEIRST  164 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~--~~l~~~g~i~i~~~~~~~  164 (199)
                      .++||+|++++++.  .....+++.+.  ++|+|||.+++.......
T Consensus       108 ~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          108 GERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             TCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             CCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            24799999988755  67778888888  999999999998876543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.59  E-value=4.5e-15  Score=117.13  Aligned_cols=102  Identities=15%  Similarity=0.118  Sum_probs=87.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||||||+|..+..++..|.+|+++|+++ +++.++++..               ..++++...|+...   +...
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~---~~~~  114 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGE---------------GPDLSFIKGDLSSL---PFEN  114 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTC---------------BTTEEEEECBTTBC---SSCT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcc---------------cCCceEEEcchhcC---CCCC
Confidence            578999999999999999999999999999954 8888877631               23688888877543   2336


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +.||+|++..++++..+...+++.+.++|+|||.+++....
T Consensus       115 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  155 (242)
T 3l8d_A          115 EQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILG  155 (242)
T ss_dssp             TCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcC
Confidence            78999999999999999999999999999999999998854

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.59  E-value=1.3e-14  Score=112.96  Aligned_cols=101  Identities=18%  Similarity=0.125  Sum_probs=84.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..+..++..+.+|+++|+++ +++.+++++.                .++++...|+....   .. 
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----------------~~~~~~~~d~~~~~---~~-  104 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP----------------KEFSITEGDFLSFE---VP-  104 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC----------------TTCCEESCCSSSCC---CC-
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC----------------CceEEEeCChhhcC---CC-
Confidence            578999999999999999999999999999954 9888887653                15677777765432   22 


Q ss_pred             CCccEEEEeccccCCcChHH--HHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGTDVVYAEHLLEP--LLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~--~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      +.||+|+++.++++..+...  +++.+.++|+|||.+++..+..
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          105 TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            78999999999999887766  9999999999999999998654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.59  E-value=7.2e-15  Score=114.75  Aligned_cols=103  Identities=16%  Similarity=0.243  Sum_probs=87.0

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      +.+|||+|||+|..+..++..+.+|+++|++ .+++.++++...++             .++++...|+....   ...+
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~~~---~~~~  102 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-------------SNVEFIVGDARKLS---FEDK  102 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCCEEEECCTTSCC---SCTT
T ss_pred             CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------CCceEEECchhcCC---CCCC
Confidence            7799999999999999999999999999995 59999999887663             36788887775432   2356


Q ss_pred             CccEEEEecc--ccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          122 PFDYIIGTDV--VYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       122 ~fD~Ii~~~~--~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +||+|+++++  +++..+...+++.+.++|+|||.+++..+.
T Consensus       103 ~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          103 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            8999999999  666667889999999999999999998775

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.59  E-value=2.4e-14  Score=108.72  Aligned_cols=125  Identities=19%  Similarity=0.279  Sum_probs=95.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..+..++..+.+|+++|+++ +++.++++.                 .++.+...|+....   ...
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~-----------------~~~~~~~~d~~~~~---~~~  105 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF-----------------PEARWVVGDLSVDQ---ISE  105 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCTTTSC---CCC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC-----------------CCCcEEEcccccCC---CCC
Confidence            578999999999999999999999999999954 888887763                 13577777765432   235


Q ss_pred             CCccEEEEe-ccccCC--cChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecCC
Q 029065          121 PPFDYIIGT-DVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA  186 (199)
Q Consensus       121 ~~fD~Ii~~-~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~  186 (199)
                      +.||+|+++ +++++.  .....++..+.++|+|||.+++..+.........+.+.+ ..+|++..+...
T Consensus       106 ~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  175 (195)
T 3cgg_A          106 TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFES  175 (195)
T ss_dssp             CCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESS
T ss_pred             CceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeecc
Confidence            689999998 566554  456899999999999999999988765432345555555 358888766544

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.59  E-value=1.4e-14  Score=116.67  Aligned_cols=106  Identities=21%  Similarity=0.171  Sum_probs=90.3

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ..++.+|||||||+|..+..++..  +.+|+++|++ .+++.+++++..++            ..++++...|....   
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------------~~~~~~~~~d~~~~---   99 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG------------IKNVKFLQANIFSL---   99 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT------------CCSEEEEECCGGGC---
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC------------CCCcEEEEcccccC---
Confidence            346789999999999999999987  5689999995 49999999988775            33688888777533   


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ....++||+|+++.++++..+...+++.+.++|+|||.+++..+
T Consensus       100 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A          100 PFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            23457899999999999999999999999999999999999875

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.59  E-value=1.1e-13  Score=107.78  Aligned_cols=129  Identities=18%  Similarity=0.072  Sum_probs=94.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||||||+|..++.++..  +.+|+++|++ .+++.|++++..++            ..++.+...|+...... .
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~------------~~~v~~~~~d~~~~~~~-~  107 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG------------VPNIKLLWVDGSDLTDY-F  107 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC------------CSSEEEEECCSSCGGGT-S
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcC------------CCCEEEEeCCHHHHHhh-c
Confidence            4679999999999999999987  4679999995 59999999998875            34789998888653211 2


Q ss_pred             cCCCccEEEEeccccCCc--------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  185 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~--------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  185 (199)
                      ..+.||+|+++.+..+..        ....++..+.++|+|||.+++.....  .......+.+ ..+|.+..+..
T Consensus       108 ~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~  181 (214)
T 1yzh_A          108 EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR--GLFEYSLVSFSQYGMKLNGVWL  181 (214)
T ss_dssp             CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH--HHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH--HHHHHHHHHHHHCCCeeeeccc
Confidence            356899999986532211        24689999999999999999976432  2223333444 34788866654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.58  E-value=8e-15  Score=114.14  Aligned_cols=100  Identities=17%  Similarity=0.201  Sum_probs=80.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~  119 (199)
                      ++.+|||||||+|..+..++..|.+|+++|+++ +++.++++   .               .+.+...++.+..... ..
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~---------------~~~~~~~~~~~~~~~~~~~  113 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA---G---------------AGEVHLASYAQLAEAKVPV  113 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT---C---------------SSCEEECCHHHHHTTCSCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh---c---------------ccccchhhHHhhccccccc
Confidence            468999999999999999999999999999955 88888776   1               3345555554331112 22


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..+||+|+++.+++ ..+...+++.+.++|+|||.+++...
T Consensus       114 ~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~  153 (227)
T 3e8s_A          114 GKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTL  153 (227)
T ss_dssp             CCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEec
Confidence            34699999999998 88999999999999999999999875

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.58  E-value=7.3e-15  Score=110.11  Aligned_cols=121  Identities=11%  Similarity=0.089  Sum_probs=94.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..+..++..+.+|+++|+++ +++.++++   .              .++++...|      .....
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~--------------~~v~~~~~d------~~~~~   73 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK---F--------------DSVITLSDP------KEIPD   73 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH---C--------------TTSEEESSG------GGSCT
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh---C--------------CCcEEEeCC------CCCCC
Confidence            567999999999999999998877999999954 88888877   1              146666655      22345


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh----------HHHHHHHHHHhCCeEEEecCC
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----------VHEQMLQMWKSNFNVKLVPKA  186 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~  186 (199)
                      +.||+|+++.++++..+...+++.+.++|+|||.+++........          ..+.+.+.+. +|++..+...
T Consensus        74 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf~~~~~~~~  148 (170)
T 3i9f_A           74 NSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NFVVEKRFNP  148 (170)
T ss_dssp             TCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TEEEEEEECS
T ss_pred             CceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-CcEEEEccCC
Confidence            789999999999999999999999999999999999987654311          1334555556 8887665443

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.58  E-value=4.3e-15  Score=118.58  Aligned_cols=106  Identities=19%  Similarity=0.219  Sum_probs=88.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++.+|||||||+|..+..++.. +++|+++|+++ +++.+++++...              .++++...|+...   +.
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~---~~  116 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN--------------NKIIFEANDILTK---EF  116 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC--------------TTEEEEECCTTTC---CC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC--------------CCeEEEECccccC---CC
Confidence            35789999999999999999987 88999999955 888887764332              3688888887643   23


Q ss_pred             cCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      ..++||+|+++.++++.  .+...+++.+.++|+|||.+++......
T Consensus       117 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  163 (266)
T 3ujc_A          117 PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT  163 (266)
T ss_dssp             CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            36789999999999998  8999999999999999999999886543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.58  E-value=2.1e-14  Score=118.21  Aligned_cols=106  Identities=14%  Similarity=0.160  Sum_probs=89.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++.+|||||||+|..+..++.. |++|+++|+++ +++.+++++...+.           ..++++...|+.+.     
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~-----  152 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----------NRSRQVLLQGWEDF-----  152 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----------SSCEEEEESCGGGC-----
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChHHC-----
Confidence            35789999999999999999977 89999999954 99999998876643           24688888776432     


Q ss_pred             cCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                       .+.||+|++..++++.  .++..+++.+.++|+|||.+++......
T Consensus       153 -~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  198 (318)
T 2fk8_A          153 -AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY  198 (318)
T ss_dssp             -CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred             -CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence             2689999999999886  7899999999999999999999887654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.58  E-value=3.1e-15  Score=122.33  Aligned_cols=125  Identities=15%  Similarity=0.240  Sum_probs=88.8

Q ss_pred             cCCCCCCCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhcccc--------------------
Q 029065           36 FCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQ--------------------   92 (199)
Q Consensus        36 ~~~~~~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~--------------------   92 (199)
                      +.+..+++++|||||||+|..++.++..  +.+|+++|+++ +++.|++++...+.....                    
T Consensus        40 l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (292)
T 3g07_A           40 LKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTT  119 (292)
T ss_dssp             SCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------
T ss_pred             hhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence            3455678999999999999999999987  56899999955 999999886554311000                    


Q ss_pred             -------------------------CCC-CCCCCCcEEEEEeeeCCCcc--ccccCCCccEEEEeccccCC------cCh
Q 029065           93 -------------------------MNP-GSDLLGSIQAVELDWGNEDH--IKAVAPPFDYIIGTDVVYAE------HLL  138 (199)
Q Consensus        93 -------------------------~~~-~~~~~~~i~~~~~d~~~~~~--~~~~~~~fD~Ii~~~~~~~~------~~~  138 (199)
                                               .+. ......++++...|+.....  .....+.||+|++..++.+.      ..+
T Consensus       120 ~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~  199 (292)
T 3g07_A          120 VRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGL  199 (292)
T ss_dssp             ----------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHH
Confidence                                     000 00111479999988865431  12235789999999987443      378


Q ss_pred             HHHHHHHHHhcCCCcEEEEEEE
Q 029065          139 EPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       139 ~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..+++.+.++|+|||.+++..+
T Consensus       200 ~~~l~~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          200 KRMFRRIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             HHHHHHHHHHEEEEEEEEEECC
T ss_pred             HHHHHHHHHHhCCCcEEEEecC
Confidence            8999999999999999998754

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.57  E-value=1.3e-14  Score=112.03  Aligned_cols=121  Identities=18%  Similarity=0.222  Sum_probs=93.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||+|||+|..++.+++.+. +|+++|+++ +++.|++++..++.            .++++...|+...     .
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~-----~  122 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGI------------YDIALQKTSLLAD-----V  122 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------------CCCEEEESSTTTT-----C
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CceEEEecccccc-----C
Confidence            578999999999999999998876 799999954 99999999988763            2478888777543     2


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEec
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP  184 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~  184 (199)
                      .+.||+|+++.++.   ....+++.+.++|+|||.++++......  .+.+.+.+. .+|++..+.
T Consensus       123 ~~~fD~i~~~~~~~---~~~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~~~~~Gf~~~~~~  183 (205)
T 3grz_A          123 DGKFDLIVANILAE---ILLDLIPQLDSHLNEDGQVIFSGIDYLQ--LPKIEQALAENSFQIDLKM  183 (205)
T ss_dssp             CSCEEEEEEESCHH---HHHHHGGGSGGGEEEEEEEEEEEEEGGG--HHHHHHHHHHTTEEEEEEE
T ss_pred             CCCceEEEECCcHH---HHHHHHHHHHHhcCCCCEEEEEecCccc--HHHHHHHHHHcCCceEEee
Confidence            47899999987653   3578899999999999999998665443  234444443 567775543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.57  E-value=4.9e-15  Score=120.45  Aligned_cols=112  Identities=16%  Similarity=0.167  Sum_probs=87.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||||||+|..+..++..|++|+++|+++ +++.|++++.......        ...++.+...|+..........
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~  128 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEP--------AFDKWVIEEANWLTLDKDVPAG  128 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSH--------HHHTCEEEECCGGGHHHHSCCT
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhccccc--------ccceeeEeecChhhCccccccC
Confidence            567999999999999999999999999999955 9999998874432100        0125667776664321000235


Q ss_pred             CCccEEEEe-ccccCCcC-------hHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGT-DVVYAEHL-------LEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~-~~~~~~~~-------~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ++||+|++. .++.+..+       ...+++.+.++|+|||.+++..+.
T Consensus       129 ~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          129 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             TCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            789999998 78888777       999999999999999999998765

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.57  E-value=3.6e-14  Score=106.73  Aligned_cols=124  Identities=10%  Similarity=0.008  Sum_probs=88.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|..++.++..  +.+|+++|+++ +++.+++++..++.           ..++ +...|...  ..+.
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~-~~~~d~~~--~~~~   90 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV-----------SDRI-AVQQGAPR--AFDD   90 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC-----------TTSE-EEECCTTG--GGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC-----------CCCE-EEecchHh--hhhc
Confidence            5679999999999999999987  56799999955 99999999887753           2256 55555432  2222


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  185 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~  185 (199)
                      ..+.||+|+++.++++    ..+++.+.++|+|||.+++.......  ...+...+. .++++..+..
T Consensus        91 ~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  152 (178)
T 3hm2_A           91 VPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVES--EQMLWALRKQFGGTISSFAI  152 (178)
T ss_dssp             CCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHHH--HHHHHHHHHHHCCEEEEEEE
T ss_pred             cCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecccc--HHHHHHHHHHcCCeeEEEEe
Confidence            2378999999988766    78999999999999999987765422  233333332 3466554443

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.57  E-value=1.7e-14  Score=117.36  Aligned_cols=123  Identities=16%  Similarity=0.187  Sum_probs=94.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||+|||+|..++.+++.|+. |+++|++ .+++.|++|+..|+.           ..++++.+.|..+...    
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~-----------~~~v~~~~~D~~~~~~----  189 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFPG----  189 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCCC----
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEECCHHHhcc----
Confidence            4789999999999999999999885 9999995 499999999998874           2358888877764432    


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC----hhHHHHHHHHHH-hCCeEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQMWK-SNFNVKLV  183 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~----~~~~~~~~~~~~-~~~~v~~~  183 (199)
                      .+.||+|+++++    .....++..+.++|+|||.+++......    ....+.+.+.+. .++.+..+
T Consensus       190 ~~~fD~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~  254 (278)
T 2frn_A          190 ENIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL  254 (278)
T ss_dssp             CSCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred             cCCccEEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence            568999999765    3447788899999999999988776532    223445555543 47777663

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.57  E-value=9.2e-15  Score=115.28  Aligned_cols=102  Identities=19%  Similarity=0.173  Sum_probs=84.9

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++.+|||||||+|..+..++..|. +|+++|+++ +++.++++...               .++++...|+...   ..
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------~~~~~~~~d~~~~---~~  103 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---------------TGITYERADLDKL---HL  103 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---------------SSEEEEECCGGGC---CC
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---------------CCceEEEcChhhc---cC
Confidence            3578999999999999999999888 899999954 88888776422               2577777776533   23


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..+.||+|+++.++++..+...+++.+.++|+|||.+++..+
T Consensus       104 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          104 PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence            357899999999999988999999999999999999999874

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.57  E-value=4.4e-15  Score=112.65  Aligned_cols=111  Identities=15%  Similarity=0.203  Sum_probs=86.9

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-cc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~  117 (199)
                      .++.+|||+|||+|..++.++..++ +|+++|++ .+++.|++++..++.           ..++++...|+.+... ..
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~~~~~  111 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----------PEKFEVRKMDANRALEQFY  111 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHHHHHH
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CcceEEEECcHHHHHHHHH
Confidence            4678999999999999998888764 79999995 599999999988753           2368888888754211 11


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHH--HHhcCCCcEEEEEEEecC
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTI--FALSGPKTTILLGYEIRS  163 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l--~~~l~~~g~i~i~~~~~~  163 (199)
                      ...+.||+|+++++ |+......++..+  .++|+|||.+++..+...
T Consensus       112 ~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          112 EEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             HTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             hcCCCCCEEEECCC-CCchhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            11568999999887 5566778888888  778999999999887643

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.57  E-value=2e-14  Score=121.82  Aligned_cols=119  Identities=18%  Similarity=0.201  Sum_probs=92.3

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ..++.+|||||||+|..+..++..   +.+|+++|+++ +++.+++++..+......    .....++++...|+.+...
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g----~~~~~~v~~~~~d~~~l~~  156 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFG----SPSRSNVRFLKGFIENLAT  156 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHS----STTCCCEEEEESCTTCGGG
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhccc----ccCCCceEEEEccHHHhhh
Confidence            457889999999999999999875   55899999954 999999988765210000    0002478999888865422


Q ss_pred             c---cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          116 I---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       116 ~---~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .   +...++||+|+++.++++..++..+++.+.++|+|||.+++.....
T Consensus       157 ~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          157 AEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             CBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            2   3345789999999999999999999999999999999999987653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.57  E-value=1.7e-14  Score=111.88  Aligned_cols=102  Identities=14%  Similarity=0.078  Sum_probs=85.2

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..+..++..|.+|+++|+++ +++.+++    .+            ..++++...|+...    ..
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~------------~~~~~~~~~d~~~~----~~  104 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HG------------LDNVEFRQQDLFDW----TP  104 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GC------------CTTEEEEECCTTSC----CC
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cC------------CCCeEEEecccccC----CC
Confidence            3567999999999999999999999999999954 8888877    22            24688888887543    34


Q ss_pred             CCCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .++||+|+++.++++...  ...+++.+.++|+|||.+++....+
T Consensus       105 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          105 DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            678999999999988776  4899999999999999999987644

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.57  E-value=2.2e-14  Score=119.60  Aligned_cols=112  Identities=18%  Similarity=0.117  Sum_probs=86.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-ccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~  119 (199)
                      ++++|||+|||+|..++.++..|++|+++|+++ +++.|++|+..+++.          ..++++.+.|+...... ...
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~----------~~~v~~i~~D~~~~l~~~~~~  222 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLE----------QAPIRWICEDAMKFIQREERR  222 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCT----------TSCEEEECSCHHHHHHHHHHH
T ss_pred             CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCC----------ccceEEEECcHHHHHHHHHhc
Confidence            467999999999999999999999999999955 999999999988642          11478888776432110 011


Q ss_pred             CCCccEEEEeccccCC----------cChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          120 APPFDYIIGTDVVYAE----------HLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~----------~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      .+.||+|+++++.+..          ..+..++..+.++|+|||.+++......
T Consensus       223 ~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~  276 (332)
T 2igt_A          223 GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI  276 (332)
T ss_dssp             TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred             CCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC
Confidence            4689999999886542          2467889999999999999887776543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.57  E-value=1.3e-14  Score=115.68  Aligned_cols=105  Identities=16%  Similarity=0.173  Sum_probs=87.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      -++.+|||+|||+|..+..++..+.+|+++|+++ +++.+++++ ...            ..++.+...|+...   +..
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~------------~~~~~~~~~d~~~~---~~~  101 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGV------------DRKVQVVQADARAI---PLP  101 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTS------------CTTEEEEESCTTSC---CSC
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hcc------------CCceEEEEcccccC---CCC
Confidence            3578999999999999999999899999999955 999998886 221            34788888877543   233


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .+.||+|+++.++++..+...++..+.++|+|||.+++....
T Consensus       102 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (263)
T 2yqz_A          102 DESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQ  143 (263)
T ss_dssp             TTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEEecC
Confidence            578999999999999889999999999999999999887444

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.56  E-value=3.7e-14  Score=112.29  Aligned_cols=129  Identities=13%  Similarity=0.017  Sum_probs=96.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC-CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g-~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||||||+|..+..++..+ .+|+++|+++ +++.+++++..++            ..++++...|+...   ...
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~------------~~~~~~~~~d~~~~---~~~  143 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG------------KRVRNYFCCGLQDF---TPE  143 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG------------GGEEEEEECCGGGC---CCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC------------CceEEEEEcChhhc---CCC
Confidence            57899999999999999988775 4799999954 9999998876553            12577777776433   233


Q ss_pred             CCCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEecCh------------hHHHHHHHHHH-hCCeEEEec
Q 029065          120 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK-SNFNVKLVP  184 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~~~~------------~~~~~~~~~~~-~~~~v~~~~  184 (199)
                      .+.||+|+++.++++..+  ...+++.+.++|+|||.+++.......            ...+.+.+.+. .||++..+.
T Consensus       144 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  223 (241)
T 2ex4_A          144 PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  223 (241)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence            468999999999988766  559999999999999999998764321            01345555553 578886654


Q ss_pred             C
Q 029065          185 K  185 (199)
Q Consensus       185 ~  185 (199)
                      .
T Consensus       224 ~  224 (241)
T 2ex4_A          224 R  224 (241)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.56  E-value=2.3e-14  Score=115.07  Aligned_cols=122  Identities=20%  Similarity=0.219  Sum_probs=93.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|.+++.+++.|++|+++|++ .+++.+++|+..++.            . +++...|+...    ..
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~------------~-v~~~~~d~~~~----~~  181 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV------------R-PRFLEGSLEAA----LP  181 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTC------------C-CEEEESCHHHH----GG
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC------------c-EEEEECChhhc----Cc
Confidence            357899999999999999999999999999995 499999999988863            2 67777666431    12


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEec
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP  184 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~  184 (199)
                      .++||+|+++.+.   ..+..++..+.++|+|||.++++......  ...+.+.+. .+|++..+.
T Consensus       182 ~~~fD~Vv~n~~~---~~~~~~l~~~~~~LkpgG~lils~~~~~~--~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          182 FGPFDLLVANLYA---ELHAALAPRYREALVPGGRALLTGILKDR--APLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             GCCEEEEEEECCH---HHHHHHHHHHHHHEEEEEEEEEEEEEGGG--HHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEECCcH---HHHHHHHHHHHHHcCCCCEEEEEeeccCC--HHHHHHHHHHCCCEEEEEe
Confidence            4689999997543   24678999999999999999998765543  244555553 478886553

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.56  E-value=1.6e-14  Score=113.62  Aligned_cols=106  Identities=13%  Similarity=0.195  Sum_probs=86.3

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ..++.+|||+|||+|..+..++..  +.+|+++|++ .+++.+++++...              .++++...|+....  
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~~--  105 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN--------------LKVKYIEADYSKYD--  105 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC--------------TTEEEEESCTTTCC--
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC--------------CCEEEEeCchhccC--
Confidence            346789999999999999999987  7789999995 4999998876433              26788887775432  


Q ss_pred             cccCCCccEEEEeccccCCcChH--HHHHHHHHhcCCCcEEEEEEEecC
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~--~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                       . .+.||+|+++.++++..+..  .+++.+.++|+|||.+++++....
T Consensus       106 -~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  152 (234)
T 3dtn_A          106 -F-EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG  152 (234)
T ss_dssp             -C-CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             -C-CCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence             2 27899999999998876554  599999999999999999986543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.56  E-value=1.3e-14  Score=122.86  Aligned_cols=109  Identities=17%  Similarity=0.212  Sum_probs=89.7

Q ss_pred             CCCCCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           37 CPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +....++++|||||||+|.+++.+++.|+ +|+++|.+++++.|++++..++.           ..++++...|+.+.. 
T Consensus        58 ~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-  125 (376)
T 3r0q_C           58 NKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNL-----------DHIVEVIEGSVEDIS-  125 (376)
T ss_dssp             TTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTC-----------TTTEEEEESCGGGCC-
T ss_pred             ccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCC-----------CCeEEEEECchhhcC-
Confidence            44567889999999999999999999988 79999998999999999988864           346899988875442 


Q ss_pred             ccccCCCccEEEEeccccC---CcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~---~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                        . .++||+|++..+.|.   ...+..++..+.++|+|||.+++...
T Consensus       126 --~-~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~  170 (376)
T 3r0q_C          126 --L-PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA  170 (376)
T ss_dssp             --C-SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred             --c-CCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence              1 278999999765555   36788999999999999998866543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.56  E-value=2.9e-14  Score=116.52  Aligned_cols=104  Identities=15%  Similarity=0.113  Sum_probs=85.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHh---hCCeEEEeechh-HHHHHHHHHHHh-hhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           42 KGKRVIELGAGCGVAGFGMAL---LGCNVITTDQIE-VLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~---~g~~v~~~D~~~-~l~~a~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++.+|||||||+|..+..++.   .+.+|+++|+++ +++.|++++... +.           ..++++...|+.+....
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----------~~~v~~~~~d~~~~~~~  104 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-----------YKNVSFKISSSDDFKFL  104 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C-----------CTTEEEEECCTTCCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----------CCceEEEEcCHHhCCcc
Confidence            578999999999999999994   577899999955 999999988765 21           34789999888654321


Q ss_pred             c---ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEE
Q 029065          117 K---AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       117 ~---~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      .   ...++||+|+++.++++. ++..+++.+.++|+|||.+++
T Consensus       105 ~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          105 GADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             CTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEE
Confidence            1   012689999999999999 999999999999999999887

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.56  E-value=3.8e-14  Score=112.88  Aligned_cols=101  Identities=11%  Similarity=-0.028  Sum_probs=85.0

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .++.+|||||||+|..+..++..  +.+|+++|+++ +++.++++.                 .++.+...|+....   
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~---   91 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL-----------------PNTNFGKADLATWK---   91 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS-----------------TTSEEEECCTTTCC---
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----------------CCcEEEECChhhcC---
Confidence            35679999999999999999987  78899999954 988888761                 15677777765432   


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                       ..+.||+|+++.++++..+...+++.+.++|+|||.+++..+..
T Consensus        92 -~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  135 (259)
T 2p35_A           92 -PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDN  135 (259)
T ss_dssp             -CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred             -ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence             35789999999999999999999999999999999999988643

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.56  E-value=5.2e-15  Score=119.14  Aligned_cols=147  Identities=14%  Similarity=0.161  Sum_probs=95.1

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhcccc-------C--CCCCC--------C
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQ-------M--NPGSD--------L   99 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~-------~--~~~~~--------~   99 (199)
                      ...++++|||||||+|..++.++..|+. |+++|+++ +++.|++++..+...+..       +  +...+        .
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            4567889999999999988888888875 99999965 999998876543100000       0  00000        0


Q ss_pred             CCcEE-EEEeeeCCCcccc-ccCCCccEEEEeccccCC----cChHHHHHHHHHhcCCCcEEEEEEEecCh---------
Q 029065          100 LGSIQ-AVELDWGNEDHIK-AVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEIRST---------  164 (199)
Q Consensus       100 ~~~i~-~~~~d~~~~~~~~-~~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~~~g~i~i~~~~~~~---------  164 (199)
                      ...+. +...|........ ...++||+|+++.++++.    .+...+++.+.++|+|||.++++......         
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~  211 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF  211 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEe
Confidence            01233 6677766532111 124689999999988762    45568889999999999999998643210         


Q ss_pred             ----hHHHHHHHHHH-hCCeEEEecC
Q 029065          165 ----SVHEQMLQMWK-SNFNVKLVPK  185 (199)
Q Consensus       165 ----~~~~~~~~~~~-~~~~v~~~~~  185 (199)
                          -..+.+.+.+. .||++..+..
T Consensus       212 ~~~~~~~~~l~~~l~~aGF~i~~~~~  237 (263)
T 2a14_A          212 SCVALEKGEVEQAVLDAGFDIEQLLH  237 (263)
T ss_dssp             ECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             eccccCHHHHHHHHHHCCCEEEEEee
Confidence                01344555554 5788765543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.55  E-value=2.2e-14  Score=120.22  Aligned_cols=107  Identities=20%  Similarity=0.195  Sum_probs=88.4

Q ss_pred             CCCCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           38 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ....++++|||||||+|.+++.+++.|+ +|+++|++++++.|++++..++.           ..++++...|+.+..  
T Consensus        62 ~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~--  128 (349)
T 3q7e_A           62 RHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL-----------DHVVTIIKGKVEEVE--  128 (349)
T ss_dssp             HHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC--
T ss_pred             cccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCC-----------CCcEEEEECcHHHcc--
Confidence            3456789999999999999999999987 79999998899999999988864           346899998886542  


Q ss_pred             cccCCCccEEEEecccc---CCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          117 KAVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~---~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                       ...++||+|++..+.+   +......++..+.++|+|||.+++.
T Consensus       129 -~~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          129 -LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             -CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             -CCCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence             3357899999976543   4678999999999999999997543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.55  E-value=2.4e-14  Score=116.37  Aligned_cols=104  Identities=17%  Similarity=0.142  Sum_probs=88.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++.+|||||||+|..+..++..   +++|+++|+++ +++.+++++...+             .++++...|+.+..  
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-------------~~v~~~~~d~~~~~--   85 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------------YDSEFLEGDATEIE--   85 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS-------------SEEEEEESCTTTCC--
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEEcchhhcC--
Confidence            35789999999999999999987   57899999955 9999999876653             26788887776432  


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                       . .++||+|++..++++..+...+++.+.++|+|||.+++..+.
T Consensus        86 -~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           86 -L-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             -C-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -c-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence             2 468999999999999999999999999999999999988766

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.55  E-value=2e-14  Score=130.48  Aligned_cols=140  Identities=19%  Similarity=0.171  Sum_probs=108.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+|++|||+|||+|..++.++..|+. |+++|+++ +++.+++|+..|+..          ..++++.+.|....  ...
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~----------~~~v~~i~~D~~~~--l~~  605 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT----------GRAHRLIQADCLAW--LRE  605 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----------STTEEEEESCHHHH--HHH
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHH--HHh
Confidence            36899999999999999999998886 99999965 999999999999742          13788888777532  222


Q ss_pred             cCCCccEEEEeccccCC-----------cChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecCCC
Q 029065          119 VAPPFDYIIGTDVVYAE-----------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK  187 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~-----------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  187 (199)
                      ..++||+|+++++.+..           ..+..++..+.++|+|||.++++...+........+.  ..+++++.+....
T Consensus       606 ~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~--~~g~~~~~i~~~~  683 (703)
T 3v97_A          606 ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLA--KLGLKAQEITQKT  683 (703)
T ss_dssp             CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHH--HTTEEEEECTTTT
T ss_pred             cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHH--HcCCceeeeeecc
Confidence            34689999999886541           3467789999999999999999887754432222222  2468888999999


Q ss_pred             cCcccCC
Q 029065          188 ESTMWGN  194 (199)
Q Consensus       188 ~~~~~~~  194 (199)
                      ++++|..
T Consensus       684 lp~df~~  690 (703)
T 3v97_A          684 LSQDFAR  690 (703)
T ss_dssp             CCGGGTT
T ss_pred             CCCCCCC
Confidence            9999953

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.55  E-value=2.4e-14  Score=115.98  Aligned_cols=120  Identities=18%  Similarity=0.317  Sum_probs=90.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|.+++.++..  +.+|+++|+++ +++.+++|+..++.            .++++...|+...    .
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~------------~~v~~~~~d~~~~----~  172 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------------KNIHILQSDWFSA----L  172 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------------CSEEEECCSTTGG----G
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CceEEEEcchhhh----c
Confidence            5679999999999999999965  66899999955 99999999988763            3688888887532    1


Q ss_pred             cCCCccEEEEeccccCC-------------------------cChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHH
Q 029065          119 VAPPFDYIIGTDVVYAE-------------------------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM  173 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~-------------------------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~  173 (199)
                      ..++||+|++++++...                         ..+..++..+.++|+|||.+++............+++.
T Consensus       173 ~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~  252 (276)
T 2b3t_A          173 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFIL  252 (276)
T ss_dssp             TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHH
T ss_pred             ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHH
Confidence            24689999999776543                         23577889999999999999998765554433333333


Q ss_pred             HHhCCe
Q 029065          174 WKSNFN  179 (199)
Q Consensus       174 ~~~~~~  179 (199)
                        .+|.
T Consensus       253 --~Gf~  256 (276)
T 2b3t_A          253 --AGYH  256 (276)
T ss_dssp             --TTCT
T ss_pred             --CCCc
Confidence              3564

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.55  E-value=2.1e-14  Score=110.86  Aligned_cols=105  Identities=10%  Similarity=0.063  Sum_probs=84.7

Q ss_pred             CCCcEEEeCCCcChH-HHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVA-GFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~-sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||+|||+|.. ...++..+.+|+++|+++ +++.+++++..++             .++++...|+...   +..
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~~---~~~   86 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN-------------FKLNISKGDIRKL---PFK   86 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT-------------CCCCEEECCTTSC---CSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEECchhhC---CCC
Confidence            468999999999986 445567788999999955 9999999887653             2567777776543   233


Q ss_pred             CCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .+.||+|+++.++++.  .+...+++.+.++|+|||.+++.....
T Consensus        87 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           87 DESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             TTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             CCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            5689999999998886  788999999999999999999987653

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.55  E-value=1.5e-14  Score=114.64  Aligned_cols=110  Identities=15%  Similarity=-0.038  Sum_probs=87.8

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ...++.+|||||||+|..+..++..+.+|+++|+++ +++.++++..               ..++++...|+.+.....
T Consensus        53 ~~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~~~~~  117 (245)
T 3ggd_A           53 LFNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT---------------AANISYRLLDGLVPEQAA  117 (245)
T ss_dssp             TSCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC---------------CTTEEEEECCTTCHHHHH
T ss_pred             ccCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc---------------ccCceEEECccccccccc
Confidence            344678999999999999999999999999999955 9999988752               226788888876543211


Q ss_pred             c--cCCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          118 A--VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       118 ~--~~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      .  ....||+|+++.++++..  +...+++.+.++|+|||.+++......
T Consensus       118 ~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  167 (245)
T 3ggd_A          118 QIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG  167 (245)
T ss_dssp             HHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred             ccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            1  113599999999999877  889999999999999999888876543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.55  E-value=6.3e-16  Score=119.48  Aligned_cols=127  Identities=17%  Similarity=0.182  Sum_probs=73.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-  116 (199)
                      .++.+|||+|||+|..++.++..  +.+|+++|+++ +++.+++++..++.             ++++...|+.+.... 
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~~~~   95 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-------------VVDWAAADGIEWLIER   95 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------------------CCHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-------------ceEEEEcchHhhhhhh
Confidence            46789999999999999999988  45799999955 99999999877642             456666666431100 


Q ss_pred             cccCCCccEEEEeccccCCcCh--------------------------HHHHHHHHHhcCCCcE-EEEEEEecChhHHHH
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLL--------------------------EPLLQTIFALSGPKTT-ILLGYEIRSTSVHEQ  169 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~--------------------------~~~l~~l~~~l~~~g~-i~i~~~~~~~~~~~~  169 (199)
                      ....+.||+|+++++++.....                          ..+++.+.++|+|||. +++............
T Consensus        96 ~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~  175 (215)
T 4dzr_A           96 AERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVAR  175 (215)
T ss_dssp             HHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTSCHHHHHH
T ss_pred             hhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCccHHHHHH
Confidence            0113789999999887653322                          7788888899999999 666554444433344


Q ss_pred             HHHHHHhCCeE
Q 029065          170 MLQMWKSNFNV  180 (199)
Q Consensus       170 ~~~~~~~~~~v  180 (199)
                      ++..+..+|..
T Consensus       176 ~l~~~~~gf~~  186 (215)
T 4dzr_A          176 LFAPWRERGFR  186 (215)
T ss_dssp             HTGGGGGGTEE
T ss_pred             HHHHhhcCCce
Confidence            44423445643

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.55  E-value=1e-13  Score=104.28  Aligned_cols=119  Identities=14%  Similarity=0.168  Sum_probs=92.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..+..++..+.+|+++|+++ +++.+++++..++            ..++++...|+.+    ...
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~------------~~~~~~~~~d~~~----~~~   97 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFN------------IKNCQIIKGRAED----VLD   97 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTT------------CCSEEEEESCHHH----HGG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcC------------CCcEEEEECCccc----ccc
Confidence            3577999999999999999999777899999954 9999999998875            2468888888754    122


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  183 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~  183 (199)
                      .+.||+|+++.+    .....+++.+.++  |||.+++.......  ...+.+.+. .+|.++.+
T Consensus        98 ~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~~--~~~~~~~l~~~g~~~~~~  154 (183)
T 2yxd_A           98 KLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLEN--AAKIINEFESRGYNVDAV  154 (183)
T ss_dssp             GCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHHH--HHHHHHHHHHTTCEEEEE
T ss_pred             CCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEeccccc--HHHHHHHHHHcCCeEEEE
Confidence            368999999987    7888999999998  99999988754322  344445543 35777654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.54  E-value=8.5e-15  Score=110.56  Aligned_cols=109  Identities=13%  Similarity=0.223  Sum_probs=85.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++++|||+|||+|..++.++..+. +|+++|+++ +++.|++++..++.           ..++++...|+.+.  ...
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~--~~~   96 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----------ENRFTLLKMEAERA--IDC   96 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----------GGGEEEECSCHHHH--HHH
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCceEEEECcHHHh--HHh
Confidence            4678999999999999999998864 799999954 99999999987753           23678888777532  122


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHH--HhcCCCcEEEEEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIF--ALSGPKTTILLGYEIRS  163 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~--~~l~~~g~i~i~~~~~~  163 (199)
                      ..+.||+|++++++ +......++..+.  ++|+|||.+++......
T Consensus        97 ~~~~fD~i~~~~~~-~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           97 LTGRFDLVFLDPPY-AKETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             BCSCEEEEEECCSS-HHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             hcCCCCEEEECCCC-CcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            34579999998764 3455677788887  88999999999887654

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.54  E-value=1.7e-14  Score=122.58  Aligned_cols=142  Identities=14%  Similarity=0.054  Sum_probs=97.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCC-cEEEEEeeeCCCcc-c
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLG-SIQAVELDWGNEDH-I  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~d~~~~~~-~  116 (199)
                      .++++|||+|||+|.+++.+|..|+ +|+++|+++ +++.|++|+..|+.           .. ++++...|...... .
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~-----------~~~~v~~~~~D~~~~l~~~  279 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL-----------DMANHQLVVMDVFDYFKYA  279 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTC-----------CCTTEEEEESCHHHHHHHH
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CccceEEEECCHHHHHHHH
Confidence            4678999999999999999999887 699999955 99999999999873           22 68888877753211 1


Q ss_pred             cccCCCccEEEEeccccC-----C----cChHHHHHHHHHhcCCCcEEEEEEEecCh--hHHHHHHHHHHhCCeEEEecC
Q 029065          117 KAVAPPFDYIIGTDVVYA-----E----HLLEPLLQTIFALSGPKTTILLGYEIRST--SVHEQMLQMWKSNFNVKLVPK  185 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~-----~----~~~~~~l~~l~~~l~~~g~i~i~~~~~~~--~~~~~~~~~~~~~~~v~~~~~  185 (199)
                      .....+||+|+++++.+.     .    ..+..++..+.++|+|||.++++......  +.+...............+..
T Consensus       280 ~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~  359 (385)
T 2b78_A          280 RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL  359 (385)
T ss_dssp             HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             HHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEEEe
Confidence            111358999999988753     1    12455677788999999999998876543  222233333222222225555


Q ss_pred             CCcCcccC
Q 029065          186 AKESTMWG  193 (199)
Q Consensus       186 ~~~~~~~~  193 (199)
                      ...+++|-
T Consensus       360 ~~~~~D~p  367 (385)
T 2b78_A          360 QQLPSDFA  367 (385)
T ss_dssp             ECCCTTSC
T ss_pred             CCCCCCCC
Confidence            55555553

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.54  E-value=3.8e-14  Score=108.73  Aligned_cols=107  Identities=14%  Similarity=0.071  Sum_probs=83.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|..++.+++. +  .+|+++|++ .+++.|++++..++.           ..++++...|+.+...  
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--   88 (197)
T 3eey_A           22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-----------IDRVTLIKDGHQNMDK--   88 (197)
T ss_dssp             TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC-----------GGGEEEECSCGGGGGG--
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCeEEEECCHHHHhh--
Confidence            5789999999999999999976 2  589999995 499999999988753           2478888888754321  


Q ss_pred             ccCCCccEEEEeccccCCc---------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~---------~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ...++||+|+++.+++...         ....+++.+.++|+|||.+++....
T Consensus        89 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           89 YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence            2347899999987663311         3457999999999999999888643

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.54  E-value=3.7e-14  Score=112.59  Aligned_cols=127  Identities=11%  Similarity=0.036  Sum_probs=95.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||||||+|..+..++..+. +|+++|+++ +++.+++++...              .++++...|+...   ...
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~---~~~  155 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--------------PVGKFILASMETA---TLP  155 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--------------SEEEEEESCGGGC---CCC
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--------------CceEEEEccHHHC---CCC
Confidence            578999999999999999987754 599999954 999998875432              2678888777543   233


Q ss_pred             CCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEecCh-------------hHHHHHHHHH-HhCCeEEEe
Q 029065          120 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMW-KSNFNVKLV  183 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~~~~-------------~~~~~~~~~~-~~~~~v~~~  183 (199)
                      .+.||+|++..++++.  .+...+++.+.++|+|||.+++.......             ...+.+.+.+ ..||++..+
T Consensus       156 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~  235 (254)
T 1xtp_A          156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE  235 (254)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred             CCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence            5689999999999887  56899999999999999999998852110             0123444554 358988655


Q ss_pred             cC
Q 029065          184 PK  185 (199)
Q Consensus       184 ~~  185 (199)
                      ..
T Consensus       236 ~~  237 (254)
T 1xtp_A          236 AF  237 (254)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.54  E-value=7.7e-14  Score=118.13  Aligned_cols=108  Identities=13%  Similarity=0.111  Sum_probs=83.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.+|||+|||+|.+++.+++.  +.+|+++|+++ +++.+++|+..++...         ..++++...|....    .
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~---------~~~v~~~~~D~~~~----~  288 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA---------LDRCEFMINNALSG----V  288 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGG---------GGGEEEEECSTTTT----C
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCc---------CceEEEEechhhcc----C
Confidence            3579999999999999999988  57899999955 9999999999886420         12467777776542    2


Q ss_pred             cCCCccEEEEeccccCC-----cChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYAE-----HLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~-----~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..++||+|++++++++.     .....+++.+.++|+|||.++++....
T Consensus       289 ~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~  337 (375)
T 4dcm_A          289 EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH  337 (375)
T ss_dssp             CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence            34689999999998752     234578999999999999999977543

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.54  E-value=3.6e-14  Score=118.56  Aligned_cols=104  Identities=20%  Similarity=0.229  Sum_probs=85.7

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ...++++|||||||+|.+++.+++.|+ +|+++|++++++.|++++..++.           ..++++...|..+.   .
T Consensus        61 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~~---~  126 (340)
T 2fyt_A           61 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKL-----------EDTITLIKGKIEEV---H  126 (340)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTS---C
T ss_pred             hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCC-----------CCcEEEEEeeHHHh---c
Confidence            346788999999999999999999887 69999997799999999988763           35789888877643   2


Q ss_pred             ccCCCccEEEEecc---ccCCcChHHHHHHHHHhcCCCcEEE
Q 029065          118 AVAPPFDYIIGTDV---VYAEHLLEPLLQTIFALSGPKTTIL  156 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~---~~~~~~~~~~l~~l~~~l~~~g~i~  156 (199)
                      ...++||+|+++.+   +.+...+..++..+.++|+|||.++
T Consensus       127 ~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          127 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            23468999999874   3446678889999999999999887

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.53  E-value=6.8e-14  Score=114.30  Aligned_cols=108  Identities=18%  Similarity=0.187  Sum_probs=85.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .+.+|||||||+|..+..++..|.+|+++|+++ +++.|++++...+...         ..++++...|+.+..   . .
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---------~~~v~~~~~d~~~~~---~-~  148 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADV---------RDRCTLVQGDMSAFA---L-D  148 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHH---------HTTEEEEECBTTBCC---C-S
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhccccc---------ccceEEEeCchhcCC---c-C
Confidence            345999999999999999999999999999954 9999999887653210         147899998886432   2 5


Q ss_pred             CCccEEEEe-ccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGT-DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~-~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      +.||+|+++ .++++..  ....+++.+.++|+|||.+++.....
T Consensus       149 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          149 KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             CCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence            789999865 4454433  47899999999999999999987654

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=1e-13  Score=112.07  Aligned_cols=100  Identities=17%  Similarity=0.217  Sum_probs=84.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||||||+|..+..++..+.+|+++|+++ +++.++++.                 .++.+...|+....   . .
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~---~-~  115 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY-----------------PHLHFDVADARNFR---V-D  115 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------------TTSCEEECCTTTCC---C-S
T ss_pred             CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-----------------CCCEEEECChhhCC---c-C
Confidence            567999999999999999999889999999954 988887764                 14567777765432   2 4


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      +.||+|+++.++++..++..+++.+.++|+|||.+++..+..
T Consensus       116 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          116 KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             CCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            689999999999998999999999999999999999988764

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.53  E-value=3.7e-14  Score=111.45  Aligned_cols=109  Identities=10%  Similarity=-0.005  Sum_probs=83.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.+|||||||+|..++.+|...  ..|+|+|++ ++++.|++++..++            ..++++...|..+......
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~------------l~nv~~~~~Da~~~l~~~~  101 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG------------LSNLRVMCHDAVEVLHKMI  101 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT------------CSSEEEECSCHHHHHHHHS
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC------------CCcEEEEECCHHHHHHHHc
Confidence            46799999999999999999874  469999995 49999999998776            3468888877643211112


Q ss_pred             cCCCccEEEEe--ccccCCcCh------HHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGT--DVVYAEHLL------EPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~--~~~~~~~~~------~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..+.||.|+++  ++.......      ..+++.+.++|+|||.++++....
T Consensus       102 ~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~  153 (218)
T 3dxy_A          102 PDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE  153 (218)
T ss_dssp             CTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred             CCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH
Confidence            36789999988  444333332      259999999999999999987643

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.53  E-value=1.2e-14  Score=117.02  Aligned_cols=99  Identities=14%  Similarity=0.060  Sum_probs=80.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .+.+|||||||+|..+..++..|.+|+++|+++ |++.|++                  ..++.+.+.+..+   .+..+
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~------------------~~~v~~~~~~~e~---~~~~~   97 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR------------------HPRVTYAVAPAED---TGLPP   97 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC------------------CTTEEEEECCTTC---CCCCS
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh------------------cCCceeehhhhhh---hcccC
Confidence            356899999999999999999999999999965 8766542                  2367888877643   34456


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      +.||+|+++.++++. +...++..+.++|+|||.+.+.....
T Consensus        98 ~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~  138 (257)
T 4hg2_A           98 ASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGL  138 (257)
T ss_dssp             SCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            899999999998665 58899999999999999987766543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.53  E-value=2.4e-14  Score=112.84  Aligned_cols=103  Identities=14%  Similarity=0.037  Sum_probs=85.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..+..++..+.+|+++|++ .+++.++++....+.             ++.+...|+....   . 
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~---~-   98 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-------------KPRLACQDISNLN---I-   98 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-------------CCEEECCCGGGCC---C-
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC-------------CeEEEecccccCC---c-
Confidence            367899999999999999999999999999995 499999998876531             5677777765332   2 


Q ss_pred             CCCccEEEEec-cccCC---cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          120 APPFDYIIGTD-VVYAE---HLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       120 ~~~fD~Ii~~~-~~~~~---~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      .+.||+|+++. ++++.   .+...+++.+.++|+|||.+++..+
T Consensus        99 ~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (246)
T 1y8c_A           99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            26899999997 88886   6788999999999999999988654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.52  E-value=2.8e-14  Score=110.21  Aligned_cols=118  Identities=18%  Similarity=0.312  Sum_probs=89.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|..++.++..  +.+|+++|++ .+++.+++++..++.            .++++...|+....    
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~----  128 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------------ENIEPVQSRVEEFP----  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------------SSEEEEECCTTTSC----
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCeEEEecchhhCC----
Confidence            4789999999999999999976  6789999995 499999999887753            35888888876442    


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEe
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV  183 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~  183 (199)
                      ..++||+|+++..    ..+..++..+.++|+|||.+++.......+   . +..+..+|++..+
T Consensus       129 ~~~~~D~i~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~---~-~~~~~~g~~~~~~  185 (207)
T 1jsx_A          129 SEPPFDGVISRAF----ASLNDMVSWCHHLPGEQGRFYALKGQMPED---E-IALLPEEYQVESV  185 (207)
T ss_dssp             CCSCEEEEECSCS----SSHHHHHHHHTTSEEEEEEEEEEESSCCHH---H-HHTSCTTEEEEEE
T ss_pred             ccCCcCEEEEecc----CCHHHHHHHHHHhcCCCcEEEEEeCCCchH---H-HHHHhcCCceeee
Confidence            2468999997642    678899999999999999998876544332   2 2222237776553

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.52  E-value=8.8e-15  Score=116.84  Aligned_cols=147  Identities=15%  Similarity=0.188  Sum_probs=97.7

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccc---------cCCCCCCC--------
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRIS---------QMNPGSDL--------   99 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~---------~~~~~~~~--------   99 (199)
                      ...++++|||||||+|..++.++..+. +|+++|+++ +++.+++++..+.....         ..+...+.        
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            345778999999999999999998888 799999955 99999887644310000         00000000        


Q ss_pred             CCcE-EEEEeeeCCCccc-cccCCCccEEEEecccc----CCcChHHHHHHHHHhcCCCcEEEEEEEecC----------
Q 029065          100 LGSI-QAVELDWGNEDHI-KAVAPPFDYIIGTDVVY----AEHLLEPLLQTIFALSGPKTTILLGYEIRS----------  163 (199)
Q Consensus       100 ~~~i-~~~~~d~~~~~~~-~~~~~~fD~Ii~~~~~~----~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~----------  163 (199)
                      ..++ .+...|+...... ....+.||+|+++.+++    +...+..+++.+.++|+|||.+++......          
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~  212 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKF  212 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCccc
Confidence            0126 7788777654321 11126899999999988    556788999999999999999988763211          


Q ss_pred             ---hhHHHHHHHHH-HhCCeEEEecC
Q 029065          164 ---TSVHEQMLQMW-KSNFNVKLVPK  185 (199)
Q Consensus       164 ---~~~~~~~~~~~-~~~~~v~~~~~  185 (199)
                         .-..+.+.+.+ ..||++..+..
T Consensus       213 ~~~~~~~~~~~~~l~~aGf~~~~~~~  238 (265)
T 2i62_A          213 SSLPLGWETVRDAVEEAGYTIEQFEV  238 (265)
T ss_dssp             ECCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred             cccccCHHHHHHHHHHCCCEEEEEEE
Confidence               00123444555 35898866554

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.51  E-value=7.8e-14  Score=107.97  Aligned_cols=100  Identities=16%  Similarity=0.128  Sum_probs=82.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||+|||+|..+..+   +. +|+++|+++ +++.++++.  .               ++.+...|....   +..
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~--~---------------~~~~~~~d~~~~---~~~   92 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA--P---------------EATWVRAWGEAL---PFP   92 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC--T---------------TSEEECCCTTSC---CSC
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC--C---------------CcEEEEcccccC---CCC
Confidence            6789999999999988777   77 899999954 988888775  1               456666665432   233


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      .++||+|+++.++++..+...+++.+.++|+|||.++++.+....
T Consensus        93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  137 (211)
T 2gs9_A           93 GESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS  137 (211)
T ss_dssp             SSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred             CCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence            568999999999999999999999999999999999999887654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.51  E-value=9.6e-14  Score=104.75  Aligned_cols=118  Identities=14%  Similarity=0.106  Sum_probs=85.8

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|.+++.+++.+ +|+++|+++ +++.      .+               ++++...|+.+.    ..
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~------~~---------------~~~~~~~d~~~~----~~   75 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES------HR---------------GGNLVRADLLCS----IN   75 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT------CS---------------SSCEEECSTTTT----BC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc------cc---------------CCeEEECChhhh----cc
Confidence            456799999999999999999999 999999955 7665      11               467777777542    12


Q ss_pred             CCCccEEEEeccccCCcC---------hHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEecCCC
Q 029065          120 APPFDYIIGTDVVYAEHL---------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKAK  187 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~---------~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  187 (199)
                      .+.||+|++++++++...         ...++..+.+.+ |||.+++.......  .+.+.+.+. .+|++..+....
T Consensus        76 ~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~--~~~l~~~l~~~gf~~~~~~~~~  150 (170)
T 3q87_B           76 QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANR--PKEVLARLEERGYGTRILKVRK  150 (170)
T ss_dssp             GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC--HHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCC--HHHHHHHHHHCCCcEEEEEeec
Confidence            368999999988775433         366778888888 99999998765433  234444443 478876665543

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.51  E-value=4.9e-14  Score=114.34  Aligned_cols=109  Identities=16%  Similarity=0.078  Sum_probs=87.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++.+|||||||+|..+..++..+. +|+++|+++ +++.|++++...+.           ..++.+...|+.....  .
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--~  129 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----------RFKVFFRAQDSYGRHM--D  129 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----------SSEEEEEESCTTTSCC--C
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CccEEEEECCcccccc--C
Confidence            3678999999999998888888876 799999954 99999998876542           2367888877764421  1


Q ss_pred             cCCCccEEEEeccccC----CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..+.||+|++..++++    ..+...+++.+.++|+|||.+++..+..
T Consensus       130 ~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          130 LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            3568999999988865    4667899999999999999999988754

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.51  E-value=5.5e-14  Score=111.22  Aligned_cols=102  Identities=17%  Similarity=0.050  Sum_probs=80.9

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..++.+|||||||+|..+..++..|.+|+++|+++ +++.++++                    +++...|..+.. .+.
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~--------------------~~~~~~d~~~~~-~~~   97 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK--------------------FNVVKSDAIEYL-KSL   97 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT--------------------SEEECSCHHHHH-HTS
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh--------------------cceeeccHHHHh-hhc
Confidence            34578999999999999999999999999999955 88877665                    244444443211 022


Q ss_pred             cCCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..++||+|+++.++++..  ++..+++.+.++|+|||.+++..+..
T Consensus        98 ~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  143 (240)
T 3dli_A           98 PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP  143 (240)
T ss_dssp             CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred             CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            357899999999999877  56999999999999999999988764

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.51  E-value=1.3e-13  Score=117.47  Aligned_cols=107  Identities=15%  Similarity=0.140  Sum_probs=82.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      +|++|||+|||+|..++.++..|++|+++|+++ +++.|++|+..|+..             ..+.+.|..+.  .....
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~-------------~~~~~~D~~~~--l~~~~  278 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLR-------------VDIRHGEALPT--LRGLE  278 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC-------------CEEEESCHHHH--HHTCC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCC-------------CcEEEccHHHH--HHHhc
Confidence            389999999999999999999999999999955 999999999999742             13445554321  11113


Q ss_pred             CCccEEEEeccccCC---------cChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          121 PPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~---------~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      +.||+|+++++.+..         ..+..++..+.++|+|||.++++.....
T Consensus       279 ~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          279 GPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             CCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            449999999886553         2456888888999999999887776544

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.50  E-value=3.6e-13  Score=105.20  Aligned_cols=128  Identities=16%  Similarity=0.098  Sum_probs=89.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.+|||||||+|..++.+|..  +.+|+++|++. +++.|++++..++            ..++.+...|...... ..
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~------------~~nv~~~~~d~~~l~~-~~  104 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE------------AQNVKLLNIDADTLTD-VF  104 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC------------CSSEEEECCCGGGHHH-HC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC------------CCCEEEEeCCHHHHHh-hc
Confidence            4679999999999999999987  56899999954 9999999988775            3468888888754211 12


Q ss_pred             cCCCccEEEEeccccCCc--------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP  184 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~--------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~  184 (199)
                      ..+.||.|+++-+.-+..        ....+++.+.++|+|||.+++.......  .....+.+ ..+|....+.
T Consensus       105 ~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~--~~~~~~~~~~~g~~~~~~~  177 (213)
T 2fca_A          105 EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGL--FEYSLKSFSEYGLLLTYVS  177 (213)
T ss_dssp             CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHH--HHHHHHHHHHHTCEEEEEE
T ss_pred             CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHH--HHHHHHHHHHCCCcccccc
Confidence            356799998763322111        1478999999999999999988743211  22223333 2367665443

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.50  E-value=1.5e-13  Score=104.09  Aligned_cols=122  Identities=17%  Similarity=0.180  Sum_probs=91.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..+..++..+.+|+++|++ .+++.+++++..++.           ..++.+...|+...  . ..
T Consensus        32 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~--~-~~   97 (192)
T 1l3i_A           32 GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGL-----------GDNVTLMEGDAPEA--L-CK   97 (192)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-----------CTTEEEEESCHHHH--H-TT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCC-----------CcceEEEecCHHHh--c-cc
Confidence            357899999999999999999988889999995 599999999887753           24688888776431  1 11


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEE
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK  181 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~  181 (199)
                      .+.||+|+++.++   ..+..+++.+.++|+|||.+++.......  ...+.+.+. .+|.++
T Consensus        98 ~~~~D~v~~~~~~---~~~~~~l~~~~~~l~~gG~l~~~~~~~~~--~~~~~~~l~~~g~~~~  155 (192)
T 1l3i_A           98 IPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAILLET--KFEAMECLRDLGFDVN  155 (192)
T ss_dssp             SCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECBHHH--HHHHHHHHHHTTCCCE
T ss_pred             CCCCCEEEECCch---HHHHHHHHHHHHhcCCCcEEEEEecCcch--HHHHHHHHHHCCCceE
Confidence            2589999998765   35789999999999999999888765322  334444443 356443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.50  E-value=1.2e-13  Score=114.73  Aligned_cols=103  Identities=23%  Similarity=0.254  Sum_probs=84.7

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..++++|||||||+|.+++.+++.|+ +|+++|.+++++.|++++..++.           ..++++...|..+..   .
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~~~---~  101 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGF-----------SDKITLLRGKLEDVH---L  101 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTSC---C
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCC-----------CCCEEEEECchhhcc---C
Confidence            34678999999999999999999887 69999997899999999988764           346888887776442   2


Q ss_pred             cCCCccEEEEecccc---CCcChHHHHHHHHHhcCCCcEEE
Q 029065          119 VAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTIL  156 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~---~~~~~~~~l~~l~~~l~~~g~i~  156 (199)
                      ..++||+|++..+.+   +...+..++..+.++|+|||.++
T Consensus       102 ~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            246899999986544   46678899999999999999886

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.50  E-value=1.1e-13  Score=108.44  Aligned_cols=128  Identities=17%  Similarity=0.173  Sum_probs=89.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~  116 (199)
                      ++++|||||||+|..++.+++.   +++|+++|++ .+++.|++++..++.           ..++++...|..+.. ..
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~l~~~  126 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL-----------QDKVTILNGASQDLIPQL  126 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHGGGT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC-----------CCceEEEECCHHHHHHHH
Confidence            5689999999999999999974   6789999995 599999999988764           236888887764321 11


Q ss_pred             c--ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh--CCeEEEe
Q 029065          117 K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS--NFNVKLV  183 (199)
Q Consensus       117 ~--~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~--~~~v~~~  183 (199)
                      .  ...++||+|++.....+......++..+ ++|+|||.+++........  ..|.+.+..  .|....+
T Consensus       127 ~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~--~~~~~~l~~~~~~~~~~~  194 (221)
T 3u81_A          127 KKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGT--PDFLAYVRGSSSFECTHY  194 (221)
T ss_dssp             TTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCC--HHHHHHHHHCTTEEEEEE
T ss_pred             HHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcch--HHHHHHHhhCCCceEEEc
Confidence            0  0126899999986554444444566666 9999999998877655432  344444432  3544443

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.50  E-value=6.9e-14  Score=112.02  Aligned_cols=96  Identities=14%  Similarity=0.080  Sum_probs=80.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||||||+|..+..++..+.+|+++|++ .+++.|+++..                 ++.+...|+....   . .
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~-----------------~~~~~~~d~~~~~---~-~  108 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP-----------------DAVLHHGDMRDFS---L-G  108 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCTTTCC---C-S
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----------------CCEEEECChHHCC---c-c
Confidence            46899999999999999999999999999995 49988887632                 4677777775432   2 5


Q ss_pred             CCccEEEEec-cccCC---cChHHHHHHHHHhcCCCcEEEEE
Q 029065          121 PPFDYIIGTD-VVYAE---HLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       121 ~~fD~Ii~~~-~~~~~---~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      +.||+|+++. ++.+.   .....+++.+.++|+|||.+++.
T Consensus       109 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          109 RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             CCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            7899999997 88776   47778899999999999999985

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.50  E-value=1e-13  Score=117.97  Aligned_cols=141  Identities=16%  Similarity=0.169  Sum_probs=100.0

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhh-ccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTS-RISQMNPGSDLLGSIQAVELDWGNEDH-I  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~d~~~~~~-~  116 (199)
                      .++++|||+|||+|..++.++..|+ +|+++|++ .+++.|++|+..|+. .           .++++...|...... .
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~-----------~~v~~~~~D~~~~~~~~  287 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL-----------SKAEFVRDDVFKLLRTY  287 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCG-----------GGEEEEESCHHHHHHHH
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-----------cceEEEECCHHHHHHHH
Confidence            3678999999999999999999876 69999995 499999999998863 1           167888877653311 0


Q ss_pred             cccCCCccEEEEeccccCC---------cChHHHHHHHHHhcCCCcEEEEEEEecChh--HHHHHH-HHH-HhCCeEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRSTS--VHEQML-QMW-KSNFNVKLV  183 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~---------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~--~~~~~~-~~~-~~~~~v~~~  183 (199)
                      .....+||+|+++++.+..         ..+..++..+.++|+|+|.++++.......  .+.... +.+ ..++.++.+
T Consensus       288 ~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i  367 (396)
T 3c0k_A          288 RDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFI  367 (396)
T ss_dssp             HHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            0113589999999886543         467788999999999999999988765432  222222 233 345556555


Q ss_pred             cCCCcCccc
Q 029065          184 PKAKESTMW  192 (199)
Q Consensus       184 ~~~~~~~~~  192 (199)
                      .....+++|
T Consensus       368 ~~~~~~~d~  376 (396)
T 3c0k_A          368 EQFRQAADH  376 (396)
T ss_dssp             EEEECCTTS
T ss_pred             EECCCCCCC
Confidence            554444433

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.49  E-value=2.1e-13  Score=109.64  Aligned_cols=109  Identities=12%  Similarity=0.038  Sum_probs=87.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-------HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEee-
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-------VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD-  109 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-------~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-  109 (199)
                      .++.+|||||||+|..+..++.. |  .+|+++|+++       +++.+++++..++.           ..++++...| 
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~  110 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL-----------GDRLTVHFNTN  110 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----------GGGEEEECSCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC-----------CCceEEEECCh
Confidence            36789999999999999999987 4  6899999943       89999998876643           2368888776 


Q ss_pred             eCCCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          110 WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       110 ~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +... ..+...++||+|+++.++++..+...+++.+..+++|||.+++....
T Consensus       111 ~~~~-~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          111 LSDD-LGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             TTTC-CGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             hhhc-cCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            3221 22234578999999999999888888899999999999999998754

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.49  E-value=3.8e-13  Score=107.44  Aligned_cols=108  Identities=19%  Similarity=0.138  Sum_probs=84.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++++|||||||+|..++.++..   +.+|+++|++ ++++.|++++...+.           ..++++...|..+.....
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~l~~~  131 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV-----------DQRVTLREGPALQSLESL  131 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHTC
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHhc
Confidence            5789999999999999999987   6789999995 599999999988764           347888887765321111


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      ...++||+|++..   .......+++.+.++|+|||.+++......
T Consensus       132 ~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~  174 (248)
T 3tfw_A          132 GECPAFDLIFIDA---DKPNNPHYLRWALRYSRPGTLIIGDNVVRD  174 (248)
T ss_dssp             CSCCCCSEEEECS---CGGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred             CCCCCeEEEEECC---chHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence            1134899999864   345677899999999999999888766543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.49  E-value=1.6e-13  Score=107.23  Aligned_cols=104  Identities=15%  Similarity=0.082  Sum_probs=73.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|..+..++...  .+|+++|+++ +++.+.+.+...              .++.+...|.........
T Consensus        57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--------------~~v~~~~~d~~~~~~~~~  122 (210)
T 1nt2_A           57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--------------NNIIPLLFDASKPWKYSG  122 (210)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--------------SSEEEECSCTTCGGGTTT
T ss_pred             CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--------------CCeEEEEcCCCCchhhcc
Confidence            57899999999999999998764  5799999955 777666554332              146666655543211111


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..+.||+|+++-  ........+++.+.++|+|||.++++.+.
T Consensus       123 ~~~~fD~V~~~~--~~~~~~~~~l~~~~r~LkpgG~l~i~~~~  163 (210)
T 1nt2_A          123 IVEKVDLIYQDI--AQKNQIEILKANAEFFLKEKGEVVIMVKA  163 (210)
T ss_dssp             TCCCEEEEEECC--CSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             cccceeEEEEec--cChhHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            236899999872  22333445689999999999999998654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.49  E-value=6.2e-14  Score=114.02  Aligned_cols=155  Identities=16%  Similarity=0.130  Sum_probs=96.1

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhh-----------h-ccccCCCC-C-----CC
Q 029065           40 KLKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNT-----------S-RISQMNPG-S-----DL   99 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~-----------~-~~~~~~~~-~-----~~   99 (199)
                      ..++.+|||||||+|..++.++. .+.+|+++|+++ +++.|++++....           . .+....+. .     -.
T Consensus        69 ~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           69 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            34778999999999996655554 367899999955 9999888653210           0 00000000 0     00


Q ss_pred             CCcEEEEEeeeCCCccc---cccCCCccEEEEeccccC----CcChHHHHHHHHHhcCCCcEEEEEEEecC---------
Q 029065          100 LGSIQAVELDWGNEDHI---KAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIRS---------  163 (199)
Q Consensus       100 ~~~i~~~~~d~~~~~~~---~~~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l~~~g~i~i~~~~~~---------  163 (199)
                      ...+++...|.......   ....++||+|+++.++++    ..++..+++.+.++|+|||.+++......         
T Consensus       149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~  228 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEAR  228 (289)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEE
T ss_pred             hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCee
Confidence            00134555566542111   122456999999999988    55789999999999999999988743211         


Q ss_pred             ----hhHHHHHHHHHH-hCCeEEEecCCCcCcccCC
Q 029065          164 ----TSVHEQMLQMWK-SNFNVKLVPKAKESTMWGN  194 (199)
Q Consensus       164 ----~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~  194 (199)
                          .-..+.+.+.+. .||++..+.....+..|.+
T Consensus       229 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~  264 (289)
T 2g72_A          229 LTVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQT  264 (289)
T ss_dssp             EECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCC
T ss_pred             eeeccCCHHHHHHHHHHcCCeEEEeeEeeccccccc
Confidence                011344555553 5898877766555555544

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.49  E-value=1.2e-13  Score=111.89  Aligned_cols=102  Identities=16%  Similarity=0.129  Sum_probs=84.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC--eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC--NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .++.+|||+|||+|.+++.+++.+.  +|+++|++ .+++.|++|+..|+.            .++.+...|..+. .  
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l------------~~~~~~~~d~~~~-~--  182 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL------------NNVIPILADNRDV-E--  182 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC------------SSEEEEESCGGGC-C--
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCEEEEECChHHc-C--
Confidence            3578999999999999999998854  79999995 599999999999873            4677888777543 1  


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                       ..+.||+|+++++.    ....++..+.+.|+|||.++++....
T Consensus       183 -~~~~~D~Vi~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          183 -LKDVADRVIMGYVH----KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             -CTTCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             -ccCCceEEEECCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence             15689999998774    67788999999999999999887765

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.49  E-value=5.8e-14  Score=108.47  Aligned_cols=105  Identities=16%  Similarity=0.225  Sum_probs=83.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++.+|||+|||+|..+..++..|. +|+++|+++ +++.++++...              ..++++...|+...   ..
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--------------~~~i~~~~~d~~~~---~~  103 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--------------VPQLRWETMDVRKL---DF  103 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--------------CTTCEEEECCTTSC---CS
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--------------CCCcEEEEcchhcC---CC
Confidence            4578999999999999999999887 799999955 99999887542              13677888776543   23


Q ss_pred             cCCCccEEEEeccccCC---------------cChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYAE---------------HLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~---------------~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..+.||+|+++.++.+.               .....+++.+.++|+|||.+++.....
T Consensus       104 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          104 PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            35689999998887432               356889999999999999999888754

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.49  E-value=9.2e-14  Score=110.41  Aligned_cols=103  Identities=19%  Similarity=0.258  Sum_probs=82.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..+..++..|.+|+++|++ .+++.+++++..++.             ++.+...|+....    ..
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~~----~~  103 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-------------KIEFLQGDVLEIA----FK  103 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEESCGGGCC----CC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC-------------ceEEEECChhhcc----cC
Confidence            46799999999999999999999999999995 499999998876642             5778887775432    23


Q ss_pred             CCccEEEEec-ccc--CCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTD-VVY--AEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~-~~~--~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ++||+|++.. .+.  .......+++.+.++|+|||.+++..+.
T Consensus       104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            6899999752 222  2356789999999999999999887654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.49  E-value=1.9e-13  Score=105.74  Aligned_cols=100  Identities=20%  Similarity=0.148  Sum_probs=81.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..+..+++.+.+|+++|++ .+++.+++++..++            ..++++...|+....   ..
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~------------~~~v~~~~~d~~~~~---~~  140 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLD------------LHNVSTRHGDGWQGW---QA  140 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTT------------CCSEEEEESCGGGCC---GG
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcC------------CCceEEEECCcccCC---cc
Confidence            357899999999999999999999999999995 59999999998775            336888887775432   22


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .++||+|+++..+.+...      .+.++|+|||.+++..+.
T Consensus       141 ~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          141 RAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             GCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred             CCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence            568999999987766443      578999999999998775

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.49  E-value=1.1e-14  Score=115.24  Aligned_cols=102  Identities=18%  Similarity=0.077  Sum_probs=84.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..++.++..|.+|+++|+++ +++.|++++..++.           ..++++...|+.+..    ..
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~----~~  142 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGI-----------ADKIEFICGDFLLLA----SF  142 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHG----GG
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC-----------CcCeEEEECChHHhc----cc
Confidence            688999999999999999999999999999955 99999999988763           237888888875432    35


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      +.||+|++++++.+.......+..+.++|+|||.+++.
T Consensus       143 ~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          143 LKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             CCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             CCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence            68999999999888777666777788889999875543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.48  E-value=4.6e-14  Score=111.56  Aligned_cols=105  Identities=19%  Similarity=0.193  Sum_probs=78.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||||||+|..+..++..+. +|+++|+++ +++.|+++...++             .++++...|+.+.. .+..
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-------------~~v~~~~~d~~~~~-~~~~  125 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVA-PTLP  125 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHG-GGSC
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-------------CCeEEEecCHHHhh-cccC
Confidence            567999999999999999988766 699999955 9999998765542             36788887775321 1233


Q ss_pred             CCCccEEEE-eccc----cCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          120 APPFDYIIG-TDVV----YAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       120 ~~~fD~Ii~-~~~~----~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      +++||+|++ ...+    .+......+++.+.++|+|||.+++...
T Consensus       126 ~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             CCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            578999999 3222    1233455779999999999999887653

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.48  E-value=7.1e-14  Score=112.16  Aligned_cols=99  Identities=18%  Similarity=0.063  Sum_probs=81.2

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||||||+|..+..++..+++|+++|+++ +++.++.+.                  ++++...|+...   +..
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------------------~~~~~~~d~~~~---~~~   91 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP------------------QVEWFTGYAENL---ALP   91 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT------------------TEEEECCCTTSC---CSC
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc------------------CCEEEECchhhC---CCC
Confidence            3578999999999999999999999999999955 766554332                  567777776533   234


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .++||+|++..++++..++..+++.+.++|+ ||.+++....
T Consensus        92 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           92 DKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             TTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             CCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence            5789999999999999999999999999999 9977777654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.48  E-value=1.8e-13  Score=107.49  Aligned_cols=116  Identities=16%  Similarity=0.191  Sum_probs=85.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc-
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-  119 (199)
                      ++.+|||+|||+|..+..++..+++|+++|+++ +++.++++   .              .++++...|+...  .+.. 
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~--------------~~~~~~~~d~~~~--~~~~~  108 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN---A--------------PHADVYEWNGKGE--LPAGL  108 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH---C--------------TTSEEEECCSCSS--CCTTC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh---C--------------CCceEEEcchhhc--cCCcC
Confidence            578999999999999999999999999999954 99999887   1              1568888887532  2233 


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecC
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  185 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  185 (199)
                      .++||+|+++      .+...+++.+.++|+|||.++........   +.+.+.+ ..+|.+..+..
T Consensus       109 ~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~l~~~Gf~~~~~~~  166 (226)
T 3m33_A          109 GAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYVGPRLNV---PEVPERLAAVGWDIVAEDH  166 (226)
T ss_dssp             CCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEEESSSCC---THHHHHHHHTTCEEEEEEE
T ss_pred             CCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEeCCcCCH---HHHHHHHHHCCCeEEEEEe
Confidence            5789999998      46788999999999999998832222222   2333444 34677655443

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.48  E-value=1.8e-13  Score=112.60  Aligned_cols=115  Identities=10%  Similarity=0.011  Sum_probs=78.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc---cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~---~~  116 (199)
                      .+.+|||||||+|.....++.. +++|+|+|+++ +++.|++.....+....      ...-.+++...+.....   .+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~------~~~~~~~f~~~d~~~d~~~~~l  121 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIK------TKYYKFDYIQETIRSDTFVSSV  121 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----------CCCEEEEEECCTTSSSHHHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcccccc------ccccccchhhhhcccchhhhhh
Confidence            4789999999999655444444 57899999965 99999997765431000      00002455555542221   01


Q ss_pred             --cccCCCccEEEEeccccC---CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 --KAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 --~~~~~~fD~Ii~~~~~~~---~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                        ....++||+|++..++++   ......+++.+.++|+|||.++++.+.+
T Consensus       122 ~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          122 REVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             HTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             hccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence              123568999999887753   3567899999999999999999988754

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.48  E-value=1.4e-13  Score=112.22  Aligned_cols=107  Identities=13%  Similarity=0.194  Sum_probs=76.5

Q ss_pred             CCCcEEEeCCCcChHHHHHH----hh--CCeE--EEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEE--Eeee
Q 029065           42 KGKRVIELGAGCGVAGFGMA----LL--GCNV--ITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV--ELDW  110 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la----~~--g~~v--~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~d~  110 (199)
                      ++.+|||||||+|..+..++    ..  +..|  +++|.++ |++.+++++....           ...++.+.  ..+.
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~-----------~~~~v~~~~~~~~~  120 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS-----------NLENVKFAWHKETS  120 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS-----------SCTTEEEEEECSCH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc-----------CCCcceEEEEecch
Confidence            45799999999997664332    22  3434  9999955 9999998875421           02244432  2221


Q ss_pred             CCCcccc------ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          111 GNEDHIK------AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       111 ~~~~~~~------~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .   ...      ...++||+|+++.++++..++..+++.+.++|+|||.+++.....
T Consensus       121 ~---~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          121 S---EYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             H---HHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             h---hhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            1   111      135789999999999999999999999999999999999886543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.48  E-value=4.8e-13  Score=109.46  Aligned_cols=101  Identities=15%  Similarity=0.181  Sum_probs=81.7

Q ss_pred             CCCCcEEEeCCCcCh-HHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGV-AGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~-~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      -++.+|||||||+|. .++.+|+ .|++|+++|++ ++++.|++++...+            ..++++...|..+.    
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~g------------l~~v~~v~gDa~~l----  184 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG------------VDGVNVITGDETVI----  184 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHT------------CCSEEEEESCGGGG----
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcC------------CCCeEEEECchhhC----
Confidence            467899999999974 4566776 58899999995 59999999998775            24788888776532    


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                       ..+.||+|++...   ..+...+++.+.+.|+|||.+++....
T Consensus       185 -~d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          185 -DGLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             -GGCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             -CCCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence             2578999998654   478889999999999999999887643

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.48  E-value=1.5e-13  Score=115.16  Aligned_cols=105  Identities=16%  Similarity=0.186  Sum_probs=84.9

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..++++|||||||+|.+++.+++.|+ +|+++|.+++++.|++++..++.           ..++++...|+.+..    
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l-----------~~~v~~~~~d~~~~~----  112 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNL-----------TDRIVVIPGKVEEVS----  112 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC----
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcchhhCC----
Confidence            45788999999999999999999876 79999997788899998888763           357899888876442    


Q ss_pred             cCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..++||+|++..++++  .......+..+.++|+|||.+++..
T Consensus       113 ~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          113 LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             CSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             CCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            1358999999988776  3455677778889999999987654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.47  E-value=4.8e-13  Score=104.56  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=83.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~  116 (199)
                      ++++|||||||+|..++.++..   +++|+++|++ ++++.+++++...+.           ..++++...|...... .
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~  126 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL-----------NDRVEVRTGLALDSLQQI  126 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence            5789999999999999999987   6789999994 599999999988763           3468888877743211 1


Q ss_pred             ccc-CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          117 KAV-APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       117 ~~~-~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      ... .++||+|++...   ......+++.+.++|+|||.+++......
T Consensus       127 ~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  171 (223)
T 3duw_A          127 ENEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVVRE  171 (223)
T ss_dssp             HHTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred             HhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            111 157999998754   45678899999999999998887765543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.47  E-value=6.2e-13  Score=105.47  Aligned_cols=127  Identities=15%  Similarity=0.145  Sum_probs=93.7

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .-+|.+|||||||+|..+..+|+. |  .+|+++|++ ++++.+++++...              .++.....|......
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--------------~ni~~V~~d~~~p~~  140 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--------------RNIFPILGDARFPEK  140 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--------------TTEEEEESCTTCGGG
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--------------cCeeEEEEeccCccc
Confidence            346889999999999999999976 5  469999995 5999887775433              367777777766655


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh-------HHHHHHHHH-HhCCeEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS-------VHEQMLQMW-KSNFNVKL  182 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~-------~~~~~~~~~-~~~~~v~~  182 (199)
                      .......+|+|++.  +.+......++..+.+.|||||.++++...+..+       .+....+.+ ..+|++.+
T Consensus       141 ~~~~~~~vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~GF~l~e  213 (233)
T 4df3_A          141 YRHLVEGVDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKD  213 (233)
T ss_dssp             GTTTCCCEEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTTCCEEE
T ss_pred             cccccceEEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence            55556789998863  3455677889999999999999999988766533       233333444 35898754

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.46  E-value=1.3e-13  Score=110.55  Aligned_cols=101  Identities=16%  Similarity=0.173  Sum_probs=80.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||||||+|..+..++..|.+|+++|+++ +++.++++.. .               .  +...|....   +...
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~-~---------------~--~~~~d~~~~---~~~~  112 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV-K---------------N--VVEAKAEDL---PFPS  112 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC-S---------------C--EEECCTTSC---CSCT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC-C---------------C--EEECcHHHC---CCCC
Confidence            678999999999999999999999999999954 9888877632 0               1  445555432   2335


Q ss_pred             CCccEEEEeccccC-CcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          121 PPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~-~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      +.||+|++..++++ ..+...+++.+.++|+|||.+++..+...
T Consensus       113 ~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  156 (260)
T 2avn_A          113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY  156 (260)
T ss_dssp             TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred             CCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence            78999999876654 46799999999999999999999887653

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.46  E-value=3.2e-13  Score=106.69  Aligned_cols=102  Identities=13%  Similarity=0.155  Sum_probs=82.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHh--hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-
Q 029065           42 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~--~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-  117 (199)
                      ++++|||||||+|..++.++.  .+.+|+++|++ ++++.|++++...+.           ..++++...|....  .. 
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~~~  137 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF-----------ENQVRIIEGNALEQ--FEN  137 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-----------TTTEEEEESCGGGC--HHH
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECCHHHH--HHh
Confidence            578999999999999999998  46789999995 599999999988763           24789988887533  22 


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ...++||+|++...   ......+++.+.++|+|||.+++..
T Consensus       138 ~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~  176 (232)
T 3ntv_A          138 VNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDN  176 (232)
T ss_dssp             HTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             hccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEee
Confidence            22578999997643   5678889999999999999987744

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.46  E-value=4.3e-13  Score=104.85  Aligned_cols=107  Identities=19%  Similarity=0.084  Sum_probs=83.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++++|||||||+|..++.++..   +.+|+++|++ ++++.+++++..++.           ..++++...|........
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~  132 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL-----------SDKIGLRLSPAKDTLAEL  132 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeCCHHHHHHHh
Confidence            5789999999999999999986   6789999995 599999999988763           346888887764321110


Q ss_pred             cc---CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          118 AV---APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       118 ~~---~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..   .++||+|++...   ......+++.+.++|+|||.+++.....
T Consensus       133 ~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~  177 (225)
T 3tr6_A          133 IHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR  177 (225)
T ss_dssp             HTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             hhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            10   168999997653   4567889999999999999998876553

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.46  E-value=2.1e-13  Score=111.33  Aligned_cols=106  Identities=15%  Similarity=0.187  Sum_probs=83.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||+|||+|.+++.++.. +++|+++|++ .+++.|++|+..++.           ..++++.+.|+....     
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l-----------~~~v~~~~~D~~~~~-----  186 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-----------SDRFFVRKGEFLEPF-----  186 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-----------TTSEEEEESSTTGGG-----
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCceEEEECcchhhc-----
Confidence            4579999999999999999988 7789999995 499999999988864           235899998886421     


Q ss_pred             CCCc---cEEEEeccccCCc-------------------ChHHHHHHHH-HhcCCCcEEEEEEEecC
Q 029065          120 APPF---DYIIGTDVVYAEH-------------------LLEPLLQTIF-ALSGPKTTILLGYEIRS  163 (199)
Q Consensus       120 ~~~f---D~Ii~~~~~~~~~-------------------~~~~~l~~l~-~~l~~~g~i~i~~~~~~  163 (199)
                      .++|   |+|++++++....                   +...+++.+. +.++|||.+++......
T Consensus       187 ~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~q  253 (284)
T 1nv8_A          187 KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQ  253 (284)
T ss_dssp             GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTC
T ss_pred             ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECchH
Confidence            2468   9999997765321                   1127889999 99999999998665443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.45  E-value=3.2e-13  Score=106.41  Aligned_cols=101  Identities=18%  Similarity=0.177  Sum_probs=81.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..+..++.. .+|+++|++ .+++.+++++..++             .++++...|+....    ..
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~~~----~~   94 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN-------------RHVDFWVQDMRELE----LP   94 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT-------------CCCEEEECCGGGCC----CS
T ss_pred             CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC-------------CceEEEEcChhhcC----CC
Confidence            3589999999999999999988 889999995 49999999887653             25677777765332    13


Q ss_pred             CCccEEEEec-cccCC---cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          121 PPFDYIIGTD-VVYAE---HLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       121 ~~fD~Ii~~~-~~~~~---~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      +.||+|++.. ++.+.   .....+++.+.++|+|||.+++..+
T Consensus        95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  138 (243)
T 3d2l_A           95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVH  138 (243)
T ss_dssp             SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence            6899999975 77765   5678899999999999999988543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.45  E-value=3.6e-13  Score=109.02  Aligned_cols=120  Identities=13%  Similarity=0.099  Sum_probs=91.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHh-hhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++.+|||+|||+|..++.++..   +.+|+++|++ .+++.+++++..+ +            ..++++...|+...  
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g------------~~~v~~~~~d~~~~--  174 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD------------IGNVRTSRSDIADF--  174 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC------------CTTEEEECSCTTTC--
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC------------CCcEEEEECchhcc--
Confidence            35789999999999999999987   6789999995 5999999998776 5            24688888777542  


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEe
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  183 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~  183 (199)
                        ...+.||+|+++     ......+++.+.++|+|||.+++..+....  .+.+.+.+. .+|....+
T Consensus       175 --~~~~~fD~Vi~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~--~~~~~~~l~~~Gf~~~~~  234 (275)
T 1yb2_A          175 --ISDQMYDAVIAD-----IPDPWNHVQKIASMMKPGSVATFYLPNFDQ--SEKTVLSLSASGMHHLET  234 (275)
T ss_dssp             --CCSCCEEEEEEC-----CSCGGGSHHHHHHTEEEEEEEEEEESSHHH--HHHHHHHSGGGTEEEEEE
T ss_pred             --CcCCCccEEEEc-----CcCHHHHHHHHHHHcCCCCEEEEEeCCHHH--HHHHHHHHHHCCCeEEEE
Confidence              224689999983     346779999999999999999998875422  344545543 46765443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.45  E-value=1.1e-13  Score=113.54  Aligned_cols=106  Identities=15%  Similarity=0.104  Sum_probs=85.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHH--h-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMA--L-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la--~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++.+|||||||+|..++.++  . .+.+|+++|++ .+++.+++++...+.           ..++++...|+.+..  
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~--  183 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL-----------AGQITLHRQDAWKLD--  183 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT-----------GGGEEEEECCGGGCC--
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECchhcCC--
Confidence            357899999999999999885  2 26689999995 499999999876653           235899988876432  


Q ss_pred             cccCCCccEEEEeccccCCcChHH---HHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEP---LLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~---~l~~l~~~l~~~g~i~i~~~~  161 (199)
                       . .+.||+|+++.++++..+...   +++.+.++|+|||.++++...
T Consensus       184 -~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  229 (305)
T 3ocj_A          184 -T-REGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLT  229 (305)
T ss_dssp             -C-CSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             -c-cCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence             2 278999999999988766655   799999999999999998743

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.45  E-value=2.1e-13  Score=108.68  Aligned_cols=120  Identities=13%  Similarity=0.058  Sum_probs=80.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh----CCeEEEeechh-HHHHHHHHHHHh---hhcccc----------CCCC----CCC
Q 029065           42 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQIE-VLPLLKRNVEWN---TSRISQ----------MNPG----SDL   99 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~----g~~v~~~D~~~-~l~~a~~~~~~~---~~~~~~----------~~~~----~~~   99 (199)
                      ++.+|||+|||+|..++.++..    +.+|+++|+++ +++.|++++..+   +.....          ..+.    ...
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4679999999999999999976    56799999954 999999988765   321000          0000    000


Q ss_pred             CCcEE-------------EEEeeeCCCcccc--ccCCCccEEEEeccccCCcC---------hHHHHHHHHHhcCCCcEE
Q 029065          100 LGSIQ-------------AVELDWGNEDHIK--AVAPPFDYIIGTDVVYAEHL---------LEPLLQTIFALSGPKTTI  155 (199)
Q Consensus       100 ~~~i~-------------~~~~d~~~~~~~~--~~~~~fD~Ii~~~~~~~~~~---------~~~~l~~l~~~l~~~g~i  155 (199)
                      ..+++             +.+.|+.......  ....+||+|++++++.....         ...+++.+.++|+|||.+
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence            00034             7777765421100  02348999999988755333         458999999999999999


Q ss_pred             EEEEEe
Q 029065          156 LLGYEI  161 (199)
Q Consensus       156 ~i~~~~  161 (199)
                      +++...
T Consensus       211 ~~~~~~  216 (250)
T 1o9g_A          211 AVTDRS  216 (250)
T ss_dssp             EEEESS
T ss_pred             EEeCcc
Confidence            985443

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.45  E-value=6.5e-14  Score=111.16  Aligned_cols=105  Identities=18%  Similarity=0.175  Sum_probs=79.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhC-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLG-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+|.+|||||||+|..+..+++.+ ++|+++|++ .+++.|+++....+             .++.+...++.... ...
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~-------------~~~~~~~~~a~~~~-~~~  124 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVA-PTL  124 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHG-GGS
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC-------------CceEEEeehHHhhc-ccc
Confidence            367899999999999999998764 569999995 59999999876553             35677777764322 123


Q ss_pred             cCCCccEEEEecc-----ccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          119 VAPPFDYIIGTDV-----VYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       119 ~~~~fD~Ii~~~~-----~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .+++||.|+....     ..+..+...+++.+.++|||||.+.+..
T Consensus       125 ~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          125 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            4578999976433     3445568889999999999999987754

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.45  E-value=3e-13  Score=114.64  Aligned_cols=139  Identities=14%  Similarity=0.124  Sum_probs=98.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-cccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~  119 (199)
                      ++++|||+|||+|..++.++..+.+|+++|++ .+++.|++|+..|+.            .++++...|...... ....
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~------------~~~~~~~~d~~~~~~~~~~~  276 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL------------GNVRVLEANAFDLLRRLEKE  276 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC------------TTEEEEESCHHHHHHHHHHT
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CCceEEECCHHHHHHHHHhc
Confidence            57899999999999999999886679999995 499999999999874            347888877643211 0011


Q ss_pred             CCCccEEEEeccccCC---------cChHHHHHHHHHhcCCCcEEEEEEEecChh--HHHH-HHHHH-HhCCeEEEecCC
Q 029065          120 APPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRSTS--VHEQ-MLQMW-KSNFNVKLVPKA  186 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~---------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~--~~~~-~~~~~-~~~~~v~~~~~~  186 (199)
                      ..+||+|+++++.+..         .....++..+.++|+|||.++++.......  .+.. +.+.+ ..+..++.+...
T Consensus       277 ~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~~~  356 (382)
T 1wxx_A          277 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEKR  356 (382)
T ss_dssp             TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence            4689999998876553         346778889999999999999988764332  1222 22233 234556666555


Q ss_pred             CcCccc
Q 029065          187 KESTMW  192 (199)
Q Consensus       187 ~~~~~~  192 (199)
                      ..++.+
T Consensus       357 ~~~~d~  362 (382)
T 1wxx_A          357 GQPFDH  362 (382)
T ss_dssp             CCCTTS
T ss_pred             CCCCCC
Confidence            555444

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.45  E-value=1e-12  Score=103.75  Aligned_cols=120  Identities=14%  Similarity=0.113  Sum_probs=87.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +|.+|||+|||+|.+++.+++.+.  +|+++|+++ +++.|++|+..+++           ..++++...|+....  . 
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----------~~~i~~~~~d~l~~l--~-   80 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL-----------KEKIQVRLANGLAAF--E-   80 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGC--C-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEECchhhhc--c-
Confidence            567999999999999999999874  599999955 99999999999975           347899888874321  1 


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v  180 (199)
                      ...+||+|+.++..  ...+..++......|+++|.+++... ........++.  ..+|.+
T Consensus        81 ~~~~~D~IviaG~G--g~~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~--~~Gf~i  137 (225)
T 3kr9_A           81 ETDQVSVITIAGMG--GRLIARILEEGLGKLANVERLILQPN-NREDDLRIWLQ--DHGFQI  137 (225)
T ss_dssp             GGGCCCEEEEEEEC--HHHHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHH--HTTEEE
T ss_pred             cCcCCCEEEEcCCC--hHHHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHH--HCCCEE
Confidence            11269999876542  23478889999999999998777544 33333333333  345655

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.45  E-value=2.3e-13  Score=113.73  Aligned_cols=103  Identities=15%  Similarity=0.128  Sum_probs=82.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.+|||+|||+|.+++.+++.+  .+|+++|+++ +++.+++++..++.             .+++...|....     
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-------------~~~~~~~d~~~~-----  257 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-------------EGEVFASNVFSE-----  257 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-------------CCEEEECSTTTT-----
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-------------CCEEEEcccccc-----
Confidence            35699999999999999999886  4799999955 99999999988753             245555555322     


Q ss_pred             cCCCccEEEEeccccC-----CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYA-----EHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~-----~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..+.||+|++++++++     ......+++.+.++|+|||.+++.....
T Consensus       258 ~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          258 VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            2568999999998764     3457889999999999999999987653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.45  E-value=6.1e-13  Score=104.86  Aligned_cols=104  Identities=14%  Similarity=0.080  Sum_probs=79.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .+.+|||+|||+|..+..++.. |  .+|+++|+++ +++.+.+++..+.              ++++...|........
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~--------------~v~~~~~d~~~~~~~~  142 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRT--------------NIIPVIEDARHPHKYR  142 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCT--------------TEEEECSCTTCGGGGG
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccC--------------CeEEEEcccCChhhhc
Confidence            5789999999999999999976 3  6799999954 7777777765542              6788887776543233


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ...+.||+|+++.+  .......++..+.++|+|||.++++...
T Consensus       143 ~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          143 MLIAMVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             GGCCCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccCCcEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            34578999999655  3333456688899999999999997664

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.44  E-value=4.1e-13  Score=114.22  Aligned_cols=138  Identities=13%  Similarity=0.123  Sum_probs=98.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-ccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~  118 (199)
                      ++++|||+|||+|..++.++..|+ +|+++|++ .+++.|++|+..|+..           .++++...|..+... ...
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~-----------~~v~~~~~d~~~~~~~~~~  285 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVE-----------DRMKFIVGSAFEEMEKLQK  285 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCG-----------GGEEEEESCHHHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----------ccceEEECCHHHHHHHHHh
Confidence            678999999999999999999876 69999995 4999999999988741           268888877653211 111


Q ss_pred             cCCCccEEEEeccccCC---------cChHHHHHHHHHhcCCCcEEEEEEEecChh--HHHHH-HHHHH-hCCeEEEec-
Q 029065          119 VAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRSTS--VHEQM-LQMWK-SNFNVKLVP-  184 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~---------~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~--~~~~~-~~~~~-~~~~v~~~~-  184 (199)
                      ...+||+|+++++.+..         .....++..+.++|+|||.++++.......  .+... .+.+. .+..+..+. 
T Consensus       286 ~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~  365 (396)
T 2as0_A          286 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEP  365 (396)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESSC
T ss_pred             hCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence            14689999998887653         346778888999999999988887654332  12222 22332 355666666 


Q ss_pred             CCCcCc
Q 029065          185 KAKEST  190 (199)
Q Consensus       185 ~~~~~~  190 (199)
                      ....++
T Consensus       366 ~~~~~~  371 (396)
T 2as0_A          366 YRTQAP  371 (396)
T ss_dssp             BBCSCT
T ss_pred             cCCCCC
Confidence            444443

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.44  E-value=1.6e-12  Score=102.88  Aligned_cols=120  Identities=15%  Similarity=0.111  Sum_probs=88.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +|.+|||+|||+|.+++.+++.|.  +|+++|+++ +++.|++|+..+++           ..++++...|+....   .
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl-----------~~~I~~~~gD~l~~~---~   86 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL-----------TSKIDVRLANGLSAF---E   86 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGC---C
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhcc---c
Confidence            567999999999999999999874  599999955 99999999999975           347999988875332   1


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v  180 (199)
                      ...+||+|+.++...  ..+..++......|+++|.++++... ..+....++..  .+|.+
T Consensus        87 ~~~~~D~IviaGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~~-~~~~lr~~L~~--~Gf~i  143 (230)
T 3lec_A           87 EADNIDTITICGMGG--RLIADILNNDIDKLQHVKTLVLQPNN-REDDLRKWLAA--NDFEI  143 (230)
T ss_dssp             GGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHH--TTEEE
T ss_pred             cccccCEEEEeCCch--HHHHHHHHHHHHHhCcCCEEEEECCC-ChHHHHHHHHH--CCCEE
Confidence            123799988765432  45778888888889999987776643 33333333333  45655

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.44  E-value=4.6e-13  Score=110.10  Aligned_cols=116  Identities=16%  Similarity=0.062  Sum_probs=85.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc---c
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---I  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---~  116 (199)
                      ++.+|||||||+|..+..++.. +.+|+++|+++ +++.++++....+...     ......++.+...|......   .
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~  108 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRR-----DSEYIFSAEFITADSSKELLIDKF  108 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSS-----CC-CCCEEEEEECCTTTSCSTTTC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcc-----cccccceEEEEEecccccchhhhc
Confidence            5679999999999988888865 56799999955 9999998876543100     00013367888888765431   1


Q ss_pred             cccCCCccEEEEeccccCC----cChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 KAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ....++||+|+++.++++.    .....++..+.++|+|||.++++.+..
T Consensus       109 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          109 RDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             SSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             ccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            1123589999999988765    346799999999999999999988754

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.44  E-value=4e-13  Score=104.63  Aligned_cols=101  Identities=18%  Similarity=0.145  Sum_probs=81.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..+..++..|.+|+++|+++ +++.++++.                   .++...|+.... .+..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-------------------~~~~~~d~~~~~-~~~~   90 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-------------------DHVVLGDIETMD-MPYE   90 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-------------------SEEEESCTTTCC-CCSC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-------------------CcEEEcchhhcC-CCCC
Confidence            3578999999999999999998888899999955 877776542                   144555554321 2223


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .+.||+|+++.++++..+...++..+.++|+|||.+++..+.
T Consensus        91 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A           91 EEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             CCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            468999999999999989999999999999999999998875

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.43  E-value=9.4e-13  Score=103.75  Aligned_cols=102  Identities=14%  Similarity=0.091  Sum_probs=75.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C-CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~  117 (199)
                      ++.+|||+|||+|..++.++.. | .+|+++|+++ +++.+++++..+              .++.+...|...... ..
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------~~v~~~~~d~~~~~~~~~  139 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--------------ENIIPILGDANKPQEYAN  139 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--------------TTEEEEECCTTCGGGGTT
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--------------CCeEEEECCCCCcccccc
Confidence            5789999999999999999987 4 6799999954 999998876443              367887777754221 11


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      . .+.||+|+.. + ........++..+.++|+|||.++++..
T Consensus       140 ~-~~~~D~v~~~-~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~  179 (230)
T 1fbn_A          140 I-VEKVDVIYED-V-AQPNQAEILIKNAKWFLKKGGYGMIAIK  179 (230)
T ss_dssp             T-SCCEEEEEEC-C-CSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c-CccEEEEEEe-c-CChhHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            2 2689999932 1 1222337889999999999999999744

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.43  E-value=2.1e-12  Score=106.81  Aligned_cols=106  Identities=16%  Similarity=0.164  Sum_probs=87.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||+|||+|..+..++..  +.+|+++|++.+++.+++++...+.           ..++++...|+....   . 
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---~-  229 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGV-----------ASRYHTIAGSAFEVD---Y-  229 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTC-----------GGGEEEEESCTTTSC---C-
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC---C-
Confidence            4679999999999999999977  6689999999999999999877653           236899888876431   1 


Q ss_pred             CCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ...||+|++..++++.  .....+++.+.++|+|||.+++.+...
T Consensus       230 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  274 (335)
T 2r3s_A          230 GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP  274 (335)
T ss_dssp             CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence            2349999999999886  456899999999999999999887654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.42  E-value=1.7e-13  Score=107.65  Aligned_cols=128  Identities=11%  Similarity=0.095  Sum_probs=89.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..+..++..+.+|+++|++ .+++.+++++..++              ++++...|....  . ..
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~--------------~v~~~~~d~~~~--~-~~  131 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN--------------NIKLILGDGTLG--Y-EE  131 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS--------------SEEEEESCGGGC--C-GG
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC--------------CeEEEECCcccc--c-cc
Confidence            357799999999999999999999899999995 49999988875442              577887776532  1 12


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecCCCcCccc
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMW  192 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  192 (199)
                      .++||+|+++.++++..      ..+.++|+|||.+++..+.........+.. ....|+...+......+.+
T Consensus       132 ~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  197 (231)
T 1vbf_A          132 EKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVGRVQKLYKVIK-KGNSPSLENLGEVMFGRIG  197 (231)
T ss_dssp             GCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSSSSEEEEEEEC-CTTSCEEEEEEEECCCBCC
T ss_pred             CCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCCCccEEEEEEE-cCCeeEEEEeccEEEEEcC
Confidence            46899999998887643      468889999999999876543211111111 1234666555554444433

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.42  E-value=4.2e-13  Score=105.60  Aligned_cols=102  Identities=11%  Similarity=0.076  Sum_probs=79.9

Q ss_pred             CcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           44 KRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+|||||||+|..++.+++.   +++|+++|++ ++++.|++++..++..          ..++++...|..+.  ....
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~----------~~~i~~~~gda~~~--l~~~  125 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS----------PSRVRFLLSRPLDV--MSRL  125 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC----------GGGEEEECSCHHHH--GGGS
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------cCcEEEEEcCHHHH--HHHh
Confidence            39999999999999999974   6789999995 5999999999887631          13788888765432  1122


Q ss_pred             -CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          120 -APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       120 -~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                       .++||+|++...   ......+++.+.++|+|||.+++...
T Consensus       126 ~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          126 ANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             CTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred             cCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence             578999998643   45677899999999999999888543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.42  E-value=4.3e-12  Score=106.90  Aligned_cols=106  Identities=12%  Similarity=0.060  Sum_probs=87.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+.+|||+|||+|..+..+++.  +.+++++|++.+++.+++++...+.           ..++++...|+...  .   
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l-----------~~~v~~~~~d~~~~--~---  265 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGL-----------ADRCEILPGDFFET--I---  265 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTTC--C---
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCc-----------CCceEEeccCCCCC--C---
Confidence            4579999999999999999987  4579999996699999998877653           35799999887621  1   


Q ss_pred             CCCccEEEEeccccCCcChH--HHHHHHHHhcCCCcEEEEEEEecC
Q 029065          120 APPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~--~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      ...||+|++..++++..+..  .+++.+.+.|+|||.++|.+....
T Consensus       266 p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~  311 (369)
T 3gwz_A          266 PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLID  311 (369)
T ss_dssp             CSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred             CCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            12799999999998766554  899999999999999999887543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.42  E-value=2.6e-12  Score=102.46  Aligned_cols=120  Identities=13%  Similarity=0.056  Sum_probs=87.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||||||+|.+++.+++.+.  +|+++|+++ +++.|++|+..+++           ..++++...|+....   .
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----------~~~I~v~~gD~l~~~---~   86 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL-----------TEQIDVRKGNGLAVI---E   86 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGC---C
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEecchhhcc---C
Confidence            567999999999999999999874  599999955 99999999999975           346898888765332   1


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v  180 (199)
                      ...+||+|+.+...-  ..+..++......|++++.++++... .......++..  .+|.+
T Consensus        87 ~~~~~D~IviagmGg--~lI~~IL~~~~~~L~~~~~lIlq~~~-~~~~lr~~L~~--~Gf~i  143 (244)
T 3gnl_A           87 KKDAIDTIVIAGMGG--TLIRTILEEGAAKLAGVTKLILQPNI-AAWQLREWSEQ--NNWLI  143 (244)
T ss_dssp             GGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHHH--HTEEE
T ss_pred             ccccccEEEEeCCch--HHHHHHHHHHHHHhCCCCEEEEEcCC-ChHHHHHHHHH--CCCEE
Confidence            123699988765422  45778888888889998887776543 33333333333  45655

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.42  E-value=2.2e-13  Score=115.80  Aligned_cols=146  Identities=13%  Similarity=0.100  Sum_probs=101.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CCe-EEEeechh-HHHHHHHHHHH-------hhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GCN-VITTDQIE-VLPLLKRNVEW-------NTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~~-v~~~D~~~-~l~~a~~~~~~-------~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      ++.+|||||||+|.+++.+|.. ++. |+|+|+++ +++.|++++..       ++..          ..++++.+.|+.
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~----------~~rVefi~GD~~  242 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK----------HAEYTLERGDFL  242 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC----------CCEEEEEECCTT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC----------CCCeEEEECccc
Confidence            5789999999999999999854 665 99999954 99999887532       2210          247899998876


Q ss_pred             CCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHH--HHHHHHHHhCCeEEEecCCCcC
Q 029065          112 NEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVH--EQMLQMWKSNFNVKLVPKAKES  189 (199)
Q Consensus       112 ~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~  189 (199)
                      +.... ..-..||+|+++.++ +..+....+..+.+.|+|||.+++.......+.-  .+-+.....-+++++...-...
T Consensus       243 ~lp~~-d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~i~~rnl~di~~il~v~el~~~~~s  320 (438)
T 3uwp_A          243 SEEWR-ERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLKGS  320 (438)
T ss_dssp             SHHHH-HHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSCTTCCCCSSSTTSGGGSEEEEECCCCTTC
T ss_pred             CCccc-cccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccCCCCCCCcccccChhhhheeeeccCCCCc
Confidence            44211 001479999998765 4567777788889999999999988776554321  1111223445777777666555


Q ss_pred             cccCCCCCCC
Q 029065          190 TMWGNPLGLY  199 (199)
Q Consensus       190 ~~~~~~~~~~  199 (199)
                      -.|-...|.|
T Consensus       321 VSWT~~~g~y  330 (438)
T 3uwp_A          321 VSWTGKPVSY  330 (438)
T ss_dssp             CCTTSSCCCC
T ss_pred             eeeccCCccE
Confidence            5777777766

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.42  E-value=9.7e-13  Score=103.13  Aligned_cols=104  Identities=18%  Similarity=0.160  Sum_probs=78.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|..++.++.. |  .+|+++|+++ +++.+++++..+              .++++...|........
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--------------~~v~~~~~d~~~~~~~~  138 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--------------RNIVPILGDATKPEEYR  138 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--------------TTEEEEECCTTCGGGGT
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--------------CCCEEEEccCCCcchhh
Confidence            5779999999999999999976 4  6799999954 888888876543              26788888876532222


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ...+.||+|+++.+  .......++..+.++|+|||.+++....
T Consensus       139 ~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~  180 (227)
T 1g8a_A          139 ALVPKVDVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIAVKS  180 (227)
T ss_dssp             TTCCCEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             cccCCceEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            22458999998654  2233345599999999999999888544

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.41  E-value=1e-13  Score=106.45  Aligned_cols=101  Identities=7%  Similarity=0.018  Sum_probs=80.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ...+|||||||+|.+++.++..  +++|+++|+++ |++.+++++..++..           .++++  .|..   . ..
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~-----------~~v~~--~d~~---~-~~  111 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTT-----------IKYRF--LNKE---S-DV  111 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCS-----------SEEEE--ECCH---H-HH
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCC-----------ccEEE--eccc---c-cC
Confidence            3569999999999999999876  67899999965 999999999988742           14544  3332   1 23


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..++||+|++..++++....+..+..+.+.|+|+|. +|+.+
T Consensus       112 ~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggv-fISfp  152 (200)
T 3fzg_A          112 YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNF-VISFP  152 (200)
T ss_dssp             TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEE-EEEEE
T ss_pred             CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCE-EEEeC
Confidence            457899999999998887777788899999999976 55555

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.41  E-value=1.5e-12  Score=109.06  Aligned_cols=105  Identities=20%  Similarity=0.100  Sum_probs=84.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC---CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|.+++.++..+   .+|+++|++ .+++.|++|+...+.            .++++.+.|..+.   .
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~------------~~i~~~~~D~~~~---~  267 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL------------SWIRFLRADARHL---P  267 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTC------------TTCEEEECCGGGG---G
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCC------------CceEEEeCChhhC---c
Confidence            46799999999999999999875   679999995 599999999988863            2788888887543   2


Q ss_pred             ccCCCccEEEEeccccCCc--------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~--------~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ...+.||+|++++++....        .+..+++.+.++|+|||.+++....
T Consensus       268 ~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          268 RFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             GTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             cccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            2345699999998864311        2478899999999999999987764

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.41  E-value=2.1e-12  Score=100.77  Aligned_cols=94  Identities=15%  Similarity=0.204  Sum_probs=77.1

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      +.+|||+|||+|..+..++..    +++|+++ +++.++++    +               +++...|....   +...+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~----~---------------~~~~~~d~~~~---~~~~~  101 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR----G---------------VFVLKGTAENL---PLKDE  101 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT----T---------------CEEEECBTTBC---CSCTT
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc----C---------------CEEEEcccccC---CCCCC
Confidence            789999999999998888765    9999954 88888765    1               35566665432   23356


Q ss_pred             CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .||+|++..++++..+...+++.+.++|+|||.+++.....
T Consensus       102 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  142 (219)
T 1vlm_A          102 SFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR  142 (219)
T ss_dssp             CEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             CeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence            89999999999999999999999999999999999988764

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.41  E-value=4.4e-13  Score=105.33  Aligned_cols=99  Identities=8%  Similarity=0.029  Sum_probs=79.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..+..++..+.+|+++|++ .+++.++++.                 .++.+...|+....   . 
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~~---~-   97 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL-----------------PDATLHQGDMRDFR---L-   97 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC-----------------TTCEEEECCTTTCC---C-
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC-----------------CCCEEEECCHHHcc---c-
Confidence            356899999999999999999988899999995 4988887753                 14677777765432   2 


Q ss_pred             CCCccEEEE-eccccCC---cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          120 APPFDYIIG-TDVVYAE---HLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       120 ~~~fD~Ii~-~~~~~~~---~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      .+.||+|++ .+++.+.   .....+++.+.++|+|||.+++...
T Consensus        98 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A           98 GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            568999995 4577665   5678899999999999999998754

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.41  E-value=1.6e-12  Score=108.44  Aligned_cols=100  Identities=15%  Similarity=0.105  Sum_probs=81.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|..++. ++.+.+|+++|++ .+++.+++|+..|+.           ..++++.+.|.....      
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l-----------~~~v~~~~~D~~~~~------  256 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKL-----------EHKIIPILSDVREVD------  256 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCGGGCC------
T ss_pred             CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECChHHhc------
Confidence            688999999999999999 8855679999995 599999999999874           246888887775332      


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      +.||+|+++++.+    ...++..+.++|+|||.+++......
T Consensus       257 ~~fD~Vi~dpP~~----~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          257 VKGNRVIMNLPKF----AHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             CCEEEEEECCTTT----GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             CCCcEEEECCcHh----HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence            6899999986643    34788899999999999888766554

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.41  E-value=2.4e-12  Score=108.23  Aligned_cols=108  Identities=12%  Similarity=0.139  Sum_probs=86.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ...+|||||||+|..+..+++.  +.+|+++|++.+++.|++++...+.           ..++++...|+..... +. 
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~-~~-  245 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSG-----------SERIHGHGANLLDRDV-PF-  245 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTT-----------GGGEEEEECCCCSSSC-CC-
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCc-----------ccceEEEEccccccCC-CC-
Confidence            4579999999999999999975  5679999997799999998766542           2478999988764320 11 


Q ss_pred             CCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .+.||+|++..++++..  ....+++.+.+.|+|||.+++.+...
T Consensus       246 p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  290 (363)
T 3dp7_A          246 PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLW  290 (363)
T ss_dssp             CCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCT
T ss_pred             CCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeecc
Confidence            26899999999998644  45688999999999999999987643

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.40  E-value=3.7e-13  Score=117.35  Aligned_cols=104  Identities=16%  Similarity=0.174  Sum_probs=83.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++++|||||||+|.+++.+++.++ +|+++|++++++.|++++..+++           ..++++...|+.+..    .
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl-----------~~~v~~~~~d~~~~~----~  221 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNL-----------TDRIVVIPGKVEEVS----L  221 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC----C
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhCc----c
Confidence            4678999999999999999999876 79999997788999999988864           357999998886532    1


Q ss_pred             CCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEE
Q 029065          120 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .++||+|+++.++|+.  ......+..+.++|+|||.+++..
T Consensus       222 ~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          222 PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             SSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             CCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            3589999998887763  445566667789999999987543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.40  E-value=7.2e-13  Score=102.79  Aligned_cols=102  Identities=13%  Similarity=0.044  Sum_probs=80.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++++|||+|||+|..++.++..   +.+|+++|++ .+++.|++++...+.           ..++++...|..+.  .+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~~  122 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL-----------IDRVELQVGDPLGI--AA  122 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG-----------GGGEEEEESCHHHH--HT
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----------CceEEEEEecHHHH--hc
Confidence            5679999999999999999976   6789999995 599999999887653           23688888776432  12


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ...+ ||+|++..   .......+++.+.++|+|||.+++...
T Consensus       123 ~~~~-fD~v~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~  161 (210)
T 3c3p_A          123 GQRD-IDILFMDC---DVFNGADVLERMNRCLAKNALLIAVNA  161 (210)
T ss_dssp             TCCS-EEEEEEET---TTSCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred             cCCC-CCEEEEcC---ChhhhHHHHHHHHHhcCCCeEEEEECc
Confidence            2235 99999873   356788999999999999999888543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.40  E-value=1.1e-12  Score=106.66  Aligned_cols=99  Identities=18%  Similarity=0.197  Sum_probs=79.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +|.+|||+|||+|..++.+|+.|+ +|+++|++ .+++.+++|+..|++           ..++++.+.|.....    .
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v-----------~~~v~~~~~D~~~~~----~  189 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFP----G  189 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCC----C
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCcHHHhc----c
Confidence            588999999999999999999985 69999995 599999999999975           356888887765432    2


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .+.||.|+++.+.+.    ..++....++|++||.+.+-.
T Consensus       190 ~~~~D~Vi~~~p~~~----~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          190 ENIADRILMGYVVRT----HEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             CSCEEEEEECCCSSG----GGGHHHHHHHEEEEEEEEEEE
T ss_pred             ccCCCEEEECCCCcH----HHHHHHHHHHcCCCCEEEEEe
Confidence            568999999877543    356666778899999875543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.40  E-value=8.3e-12  Score=96.27  Aligned_cols=126  Identities=24%  Similarity=0.275  Sum_probs=88.7

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ..++.+|||+|||+|..++.++..|. +|+++|++ .+++.+++++..++.             ++++...|+.+.    
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~----  109 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-------------KFKVFIGDVSEF----  109 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------------SEEEEESCGGGC----
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CEEEEECchHHc----
Confidence            34678999999999999999999876 59999995 499999999877642             578888776532    


Q ss_pred             ccCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecCCCc
Q 029065          118 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE  188 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~  188 (199)
                        .+.||+|+++++++..  .....+++.+.+++   |.+|+.... .....+.+.+.+ ..+|+++.+.....
T Consensus       110 --~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l---~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~  177 (207)
T 1wy7_A          110 --NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS---DVVYSIHLA-KPEVRRFIEKFSWEHGFVVTHRLTTKI  177 (207)
T ss_dssp             --CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC---SEEEEEEEC-CHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             --CCCCCEEEEcCCCccccCCchHHHHHHHHHhc---CcEEEEEeC-CcCCHHHHHHHHHHCCCeEEEEEEEec
Confidence              2489999999887664  34567888888887   445554421 122233333333 34677776655443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.40  E-value=1.1e-12  Score=103.22  Aligned_cols=102  Identities=15%  Similarity=0.146  Sum_probs=82.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|..++.++..  +.+|+++|++ .+++.|++++...+.           ..++.+...|.....  ..
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~--~~  120 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL-----------ESRIELLFGDALQLG--EK  120 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCGGGSH--HH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECCHHHHH--Hh
Confidence            5679999999999999999987  6789999995 599999999987753           236888887765321  11


Q ss_pred             c--CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          119 V--APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       119 ~--~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .  .++||+|+++.+.   .....+++.+.++|+|||.+++..
T Consensus       121 ~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          121 LELYPLFDVLFIDAAK---GQYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             HTTSCCEEEEEEEGGG---SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred             cccCCCccEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEEc
Confidence            2  4689999997653   477899999999999999998864

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.40  E-value=2e-12  Score=103.01  Aligned_cols=102  Identities=15%  Similarity=0.100  Sum_probs=82.8

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++.+|||+|||+|..+..++..   +.+|+++|++ ++++.|++++..++.           ..++++...|+.+.   
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---  157 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----------DDRVTIKLKDIYEG---  157 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC-----------TTTEEEECSCGGGC---
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC-----------CCceEEEECchhhc---
Confidence            35789999999999999999987   6789999995 599999999988763           23488888887632   


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                       ...+.||+|+++.     .....+++.+.++|+|||.+++..+..
T Consensus       158 -~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~  197 (255)
T 3mb5_A          158 -IEEENVDHVILDL-----PQPERVVEHAAKALKPGGFFVAYTPCS  197 (255)
T ss_dssp             -CCCCSEEEEEECS-----SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             -cCCCCcCEEEECC-----CCHHHHHHHHHHHcCCCCEEEEEECCH
Confidence             2346799999853     466789999999999999998876543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.40  E-value=2.5e-12  Score=107.31  Aligned_cols=106  Identities=12%  Similarity=0.048  Sum_probs=86.9

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      +.+|||||||+|..+..+++.  +.+++++|++.+++.+++++...+.           ..++++...|+.....  ...
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--~~~  246 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDL-----------GGRVEFFEKNLLDARN--FEG  246 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC-----------GGGEEEEECCTTCGGG--GTT
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCC-----------CCceEEEeCCcccCcc--cCC
Confidence            689999999999999999976  4579999997799999998877653           3468999988764321  124


Q ss_pred             CCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +.||+|++..++++..+  ...+++.+.+.|+|||.+++.+..
T Consensus       247 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (352)
T 3mcz_A          247 GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT  289 (352)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            56999999999987554  589999999999999999998764

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.39  E-value=1.1e-12  Score=104.85  Aligned_cols=104  Identities=14%  Similarity=0.023  Sum_probs=81.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~  116 (199)
                      ++++|||||||+|..++.+++.   +.+|+++|++ ++++.|++++...+.           ..++++...|..+... .
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~l~~l  147 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----------DHKIDFREGPALPVLDEM  147 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCeEEEECCHHHHHHHH
Confidence            5679999999999999999976   6789999995 599999999987753           2468888877643210 1


Q ss_pred             cc---cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ~~---~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..   ..++||+|++...   ......+++.+.++|+|||.+++..
T Consensus       148 ~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          148 IKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             HHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             HhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence            00   1468999998743   4578899999999999999988765

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.39  E-value=3.4e-12  Score=101.49  Aligned_cols=118  Identities=14%  Similarity=0.057  Sum_probs=89.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHh-hhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++.+|||+|||+|..++.++..   +.+|+++|++ .+++.+++++..+ +            ..++++...|+.+.  
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g------------~~~v~~~~~d~~~~--  160 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ------------VENVRFHLGKLEEA--  160 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------------CCCEEEEESCGGGC--
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC------------CCCEEEEECchhhc--
Confidence            36789999999999999999987   5689999995 5999999998776 5            23688888777533  


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV  180 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v  180 (199)
                       ....+.||+|+++.     .+...++..+.++|+|||.+++..+...  ....+.+.+. .+|..
T Consensus       161 -~~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~gf~~  218 (258)
T 2pwy_A          161 -ELEEAAYDGVALDL-----MEPWKVLEKAALALKPDRFLVAYLPNIT--QVLELVRAAEAHPFRL  218 (258)
T ss_dssp             -CCCTTCEEEEEEES-----SCGGGGHHHHHHHEEEEEEEEEEESCHH--HHHHHHHHHTTTTEEE
T ss_pred             -CCCCCCcCEEEECC-----cCHHHHHHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHHHCCCce
Confidence             12346899999853     4667899999999999999998876542  2344445553 45654

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.38  E-value=4.3e-12  Score=105.17  Aligned_cols=104  Identities=13%  Similarity=0.014  Sum_probs=85.7

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      +.+|||+|||+|..+..+++.  +.+++++|++.+++.+++++...+.           ..++++...|+...  .   .
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~---p  233 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGL-----------SGRAQVVVGSFFDP--L---P  233 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--C---C
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCc-----------CcCeEEecCCCCCC--C---C
Confidence            579999999999999999875  4579999996699999998877643           35799999887521  1   1


Q ss_pred             CCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..||+|++..++++..+  ...+++.+.++|+|||.+++.+...
T Consensus       234 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  277 (332)
T 3i53_A          234 AGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVA  277 (332)
T ss_dssp             CSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred             CCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence            27999999999987665  5899999999999999999987643

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.38  E-value=4.4e-12  Score=104.84  Aligned_cols=125  Identities=14%  Similarity=0.013  Sum_probs=89.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|..++.++..   +.+|+++|+++ +++.+++|+..++.            .++++.+.|.....   
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~------------~~v~~~~~D~~~~~---  182 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------------LNVILFHSSSLHIG---  182 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------------CSEEEESSCGGGGG---
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC------------CeEEEEECChhhcc---
Confidence            5789999999999999999965   36799999955 99999999988863            36788877765332   


Q ss_pred             ccCCCccEEEEeccccCC------cC----------------hHHHHHHHHHhcCCCcEEEEEEEecCh----hHHHHHH
Q 029065          118 AVAPPFDYIIGTDVVYAE------HL----------------LEPLLQTIFALSGPKTTILLGYEIRST----SVHEQML  171 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~------~~----------------~~~~l~~l~~~l~~~g~i~i~~~~~~~----~~~~~~~  171 (199)
                      ...+.||+|+++.+....      .+                ...++..+.++|+|||.+++++..-..    .+...|+
T Consensus       183 ~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l  262 (315)
T 1ixk_A          183 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWAL  262 (315)
T ss_dssp             GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             cccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHH
Confidence            235689999997664221      11                158899999999999999887754322    2334444


Q ss_pred             HHHHhCCeEEEe
Q 029065          172 QMWKSNFNVKLV  183 (199)
Q Consensus       172 ~~~~~~~~v~~~  183 (199)
                      +.  .+|++..+
T Consensus       263 ~~--~~~~~~~~  272 (315)
T 1ixk_A          263 DN--FDVELLPL  272 (315)
T ss_dssp             HH--SSEEEECC
T ss_pred             hc--CCCEEecC
Confidence            43  34555444

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.38  E-value=2.2e-12  Score=100.06  Aligned_cols=101  Identities=18%  Similarity=0.174  Sum_probs=79.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhC---CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++.+|||+|||+|..+..++..+   .+|+++|++ .+++.+++++...+            ..++++...|....   
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~------------~~~v~~~~~d~~~~---  140 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG------------YDNVIVIVGDGTLG---  140 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT------------CTTEEEEESCGGGC---
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC------------CCCeEEEECCcccC---
Confidence            457899999999999999999875   689999995 59999999987765            23578877776322   


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ....++||+|+++.++.+..      +.+.++|+|||.+++.....
T Consensus       141 ~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          141 YEPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             CGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred             CCCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence            11246899999998877644      47889999999999887654

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.38  E-value=1.6e-12  Score=107.47  Aligned_cols=100  Identities=24%  Similarity=0.216  Sum_probs=79.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCe---EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCN---VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~---v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++.+|||||||+|..++.+++.+.+   |+++|++ ++++.|++++..++.            .++++...|+....  
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~------------~~v~~~~~d~~~~~--  139 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------------ENVIFVCGDGYYGV--  139 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGCC--
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CCeEEEECChhhcc--
Confidence            35789999999999999999987654   9999995 599999999887763            35888887775421  


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                       ...++||+|++..++.+..      +.+.++|+|||.+++....
T Consensus       140 -~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          140 -PEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             -GGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred             -ccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence             1246899999998887644      5778899999999887543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.38  E-value=7.8e-13  Score=105.42  Aligned_cols=104  Identities=20%  Similarity=0.162  Sum_probs=82.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++++|||||||+|..++.+|..   +++|+++|+++ +++.|++++...+.           ..++++...|..+.  ..
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~--l~  126 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ-----------EHKIKLRLGPALDT--LH  126 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC-----------TTTEEEEESCHHHH--HH
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHH--HH
Confidence            4689999999999999999974   57899999954 99999999988764           34788888776432  11


Q ss_pred             cc-----CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AV-----APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~-----~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..     .++||+|++...   ......+++.+.++|+|||.+++....
T Consensus       127 ~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~  172 (242)
T 3r3h_A          127 SLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIF  172 (242)
T ss_dssp             HHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             HHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence            11     478999998754   466778999999999999999886554

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.38  E-value=6.7e-12  Score=99.22  Aligned_cols=103  Identities=15%  Similarity=0.106  Sum_probs=82.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||+|||+|..++.+++.+.+|+++|++ ++++.++++...++.           ..++++...|+.+..   ..
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---~~  155 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNL-----------GKNVKFFNVDFKDAE---VP  155 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTC-----------CTTEEEECSCTTTSC---CC
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCC-----------CCcEEEEEcChhhcc---cC
Confidence            357899999999999999999888889999995 599999999877653           246788877765431   12


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .+.||+|+++.     .+...+++.+.++|+|||.+++..+..
T Consensus       156 ~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~  193 (248)
T 2yvl_A          156 EGIFHAAFVDV-----REPWHYLEKVHKSLMEGAPVGFLLPTA  193 (248)
T ss_dssp             TTCBSEEEECS-----SCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred             CCcccEEEECC-----cCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence            45799999853     366788999999999999999988754

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.38  E-value=2.5e-13  Score=120.69  Aligned_cols=105  Identities=15%  Similarity=0.119  Sum_probs=77.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||||||.|.++..+|+.|++|+|+|.++ +++.|+..+..++.            -++++.+.+.++... ....
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~------------~~~~~~~~~~~~~~~-~~~~  132 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPD------------FAAEFRVGRIEEVIA-ALEE  132 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTT------------SEEEEEECCHHHHHH-HCCT
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCC------------CceEEEECCHHHHhh-hccC
Confidence            457999999999999999999999999999955 99999998877652            257777766643211 1235


Q ss_pred             CCccEEEEeccccCCcChHHH--HHHHHHhcCCCcEEEEEE
Q 029065          121 PPFDYIIGTDVVYAEHLLEPL--LQTIFALSGPKTTILLGY  159 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~--l~~l~~~l~~~g~i~i~~  159 (199)
                      ++||+|++.++++|..+...+  +..+.+.+++++..++..
T Consensus       133 ~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          133 GEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             TSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred             CCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence            689999999999997765544  334455577766554443

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.38  E-value=4e-12  Score=115.72  Aligned_cols=111  Identities=11%  Similarity=0.035  Sum_probs=86.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC---CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g---~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||||||+|.++..+++.+   .+|+++|+++ +++.|++++......      ......++++.+.|+.+.   +
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnA------kr~gl~nVefiqGDa~dL---p  791 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK------EACNVKSATLYDGSILEF---D  791 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTT------TCSSCSEEEEEESCTTSC---C
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccch------hhcCCCceEEEECchHhC---C
Confidence            57899999999999999999987   6899999955 999998877543110      001134788888777543   3


Q ss_pred             ccCCCccEEEEeccccCCcChH--HHHHHHHHhcCCCcEEEEEEEec
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~--~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ...+.||+|++..++.+.....  .+++.+.++|+|| .++++.+.+
T Consensus       792 ~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          792 SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            3457899999999999876544  6899999999999 888887654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.37  E-value=9.6e-12  Score=105.01  Aligned_cols=106  Identities=14%  Similarity=0.157  Sum_probs=83.6

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCC--eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ..++++|||+| |+|.+++.++..+.  +|+++|++ .+++.|++|+..++.            .++++...|+...  +
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~------------~~v~~~~~D~~~~--l  234 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY------------EDIEIFTFDLRKP--L  234 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC------------CCEEEECCCTTSC--C
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CCEEEEEChhhhh--c
Confidence            34688999999 99999999998875  79999995 599999999988863            3688888887642  1


Q ss_pred             cc-cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCc-EEEEEEEe
Q 029065          117 KA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT-TILLGYEI  161 (199)
Q Consensus       117 ~~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g-~i~i~~~~  161 (199)
                      +. ..+.||+|++++++... ....+++.+.++|+||| .++++...
T Consensus       235 ~~~~~~~fD~Vi~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          235 PDYALHKFDTFITDPPETLE-AIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             CTTTSSCBSEEEECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             hhhccCCccEEEECCCCchH-HHHHHHHHHHHHcccCCeEEEEEEec
Confidence            11 24589999998875433 36889999999999999 44666654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.37  E-value=5.2e-12  Score=100.23  Aligned_cols=114  Identities=7%  Similarity=-0.075  Sum_probs=79.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||||||+|..++.+|..  +..|+|+|+++ +++.|++++.......      .....++.+...|.........
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~------~~~~~nv~~~~~d~~~~l~~~~  119 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAP------AGGFQNIACLRSNAMKHLPNFF  119 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHST------TCCCTTEEEEECCTTTCHHHHC
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHH------hcCCCeEEEEECcHHHhhhhhC
Confidence            4568999999999999999977  45799999955 9999998875421000      0113578998888754211112


Q ss_pred             cCCCccEEEEeccccCCc--------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          119 VAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~--------~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..+.||.|+++-+--+..        ....+++.+.++|+|||.+++....
T Consensus       120 ~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          120 YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            357899998753211110        1257999999999999999987654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.37  E-value=1.2e-12  Score=103.90  Aligned_cols=122  Identities=11%  Similarity=0.120  Sum_probs=84.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh------CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~------g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ++.+|||||||+|..++.+++.      +++|+++|+++ +++.|+      +.           ..++++...|.....
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~-----------~~~v~~~~gD~~~~~  143 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SD-----------MENITLHQGDCSDLT  143 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GG-----------CTTEEEEECCSSCSG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------cc-----------CCceEEEECcchhHH
Confidence            4679999999999999999986      67899999954 777665      11           236888888876542


Q ss_pred             cccccC-CCccEEEEeccccCCcChHHHHHHHHH-hcCCCcEEEEEEE-----ecChhHHHHHHHHHHhCCeEEEe
Q 029065          115 HIKAVA-PPFDYIIGTDVVYAEHLLEPLLQTIFA-LSGPKTTILLGYE-----IRSTSVHEQMLQMWKSNFNVKLV  183 (199)
Q Consensus       115 ~~~~~~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~-~l~~~g~i~i~~~-----~~~~~~~~~~~~~~~~~~~v~~~  183 (199)
                      ...... .+||+|++...  + ..+..++..+.+ +|+|||.+++.+.     .........+++....+|++...
T Consensus       144 ~l~~~~~~~fD~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~~~  216 (236)
T 2bm8_A          144 TFEHLREMAHPLIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDML  216 (236)
T ss_dssp             GGGGGSSSCSSEEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEETT
T ss_pred             HHHhhccCCCCEEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEcch
Confidence            122223 37999998654  2 477889999997 9999999988652     11122334444444445666433

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.37  E-value=4.1e-12  Score=100.76  Aligned_cols=106  Identities=16%  Similarity=0.043  Sum_probs=72.4

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .-+|.+|||+|||+|..+..+|.. +  .+|+++|+++ +++.+...+...              .++.+...|......
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--------------~nv~~i~~Da~~~~~  139 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--------------PNIFPLLADARFPQS  139 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--------------TTEEEEECCTTCGGG
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------------CCeEEEEcccccchh
Confidence            346789999999999999999865 3  4799999954 765554433322              267888877654432


Q ss_pred             ccccCCCccEEEEeccccCCcChHH-HHHHHHHhcCCCcEEEEEEEec
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEP-LLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~-~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .....+.||+|+++-+.   .+... +...+.++|+|||.++++.+.+
T Consensus       140 ~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~  184 (232)
T 3id6_C          140 YKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKAR  184 (232)
T ss_dssp             TTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred             hhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccC
Confidence            22224689999987543   33333 4556667999999999886443

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.37  E-value=6.8e-13  Score=105.82  Aligned_cols=83  Identities=19%  Similarity=0.205  Sum_probs=62.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC-c-cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D-HI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~-~~  116 (199)
                      ++.+|||+|||+|.+++.++..  +.+|+++|++ .+++.|++|+..++.           ..++++.+.|..+. . ..
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~~  133 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----------SDLIKVVKVPQKTLLMDAL  133 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTCSSTTTS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC-----------CccEEEEEcchhhhhhhhh
Confidence            5679999999999999888865  6789999995 599999999988763           23588888875431 1 11


Q ss_pred             ccc-CCCccEEEEeccccCC
Q 029065          117 KAV-APPFDYIIGTDVVYAE  135 (199)
Q Consensus       117 ~~~-~~~fD~Ii~~~~~~~~  135 (199)
                      ... ++.||+|+++++++..
T Consensus       134 ~~~~~~~fD~i~~npp~~~~  153 (254)
T 2h00_A          134 KEESEIIYDFCMCNPPFFAN  153 (254)
T ss_dssp             TTCCSCCBSEEEECCCCC--
T ss_pred             hcccCCcccEEEECCCCccC
Confidence            111 2589999999887653

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.37  E-value=7.2e-12  Score=96.30  Aligned_cols=117  Identities=20%  Similarity=0.208  Sum_probs=78.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++.+|||+|||+|..++.++..|. +|+++|++ .+++.+++++.                 ++++...|+...     
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----------------~~~~~~~d~~~~-----  107 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------------GVNFMVADVSEI-----  107 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCGGGC-----
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----------------CCEEEECcHHHC-----
Confidence            4678999999999999999998876 59999995 49999988753                 346777666532     


Q ss_pred             cCCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecCC
Q 029065          119 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA  186 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (199)
                       .+.||+|++++++++..  ....+++.+.+.+   |.+++.............+..  .+ .++.+...
T Consensus       108 -~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~~~~~~~~~~~--~g-~~~~~~~~  170 (200)
T 1ne2_A          108 -SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGNAKARDFLRREFSA--RG-DVFREEKV  170 (200)
T ss_dssp             -CCCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEEEGGGHHHHHHHHHH--HE-EEEEEEEE
T ss_pred             -CCCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEEcCchHHHHHHHHHH--CC-CEEEEEEE
Confidence             26899999999987743  3457888888888   556666544333222333333  24 55554433

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.37  E-value=4.2e-12  Score=106.64  Aligned_cols=103  Identities=14%  Similarity=0.049  Sum_probs=84.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||+|||+|..+..++..  +.+++++|++.+++.+++++..++.           ..++++...|+.+.  .   
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~---  245 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL-----------ADRVTVAEGDFFKP--L---  245 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--C---
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCC-----------CCceEEEeCCCCCc--C---
Confidence            4679999999999999999977  4579999995599999999877653           34789998887531  1   


Q ss_pred             CCCccEEEEeccccCCcCh--HHHHHHHHHhcCCCcEEEEEEE
Q 029065          120 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~--~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ...||+|+++.++++..+.  ..+++.+.++|+|||.+++...
T Consensus       246 ~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          246 PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            2249999999999876654  4899999999999999988776

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.37  E-value=8.2e-12  Score=104.60  Aligned_cols=104  Identities=14%  Similarity=0.184  Sum_probs=85.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||||||+|..+..+++.  +.+|+++|++.+++.+++++...+.           ..++++...|+....     
T Consensus       190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-----  253 (359)
T 1x19_A          190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKES-----  253 (359)
T ss_dssp             TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC-----------TTTEEEEECCTTTSC-----
T ss_pred             CCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC-----------CCCEEEEeCccccCC-----
Confidence            4679999999999999999987  4589999995599999999887653           336899888876431     


Q ss_pred             CCCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .+.+|+|++..++++..+  ...+++.+.+.|+|||.+++.+..
T Consensus       254 ~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  297 (359)
T 1x19_A          254 YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  297 (359)
T ss_dssp             CCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEC
T ss_pred             CCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            123499999999987665  889999999999999999888743

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.37  E-value=4.3e-12  Score=102.59  Aligned_cols=120  Identities=13%  Similarity=0.051  Sum_probs=89.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|.+++.+++.   +.+|+++|++ .+++.|++++..++.           ..++++...|+.+.    
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~----  176 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----------IERVTIKVRDISEG----  176 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----------GGGEEEECCCGGGC----
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----------CCCEEEEECCHHHc----
Confidence            5779999999999999999987   4679999994 599999999887753           23678888777533    


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  183 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~  183 (199)
                      ...+.||+|+++.     .....++..+.++|+|||.+++..+....  ...+.+.+. .+|...++
T Consensus       177 ~~~~~~D~V~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~--~~~~~~~l~~~gf~~~~~  236 (277)
T 1o54_A          177 FDEKDVDALFLDV-----PDPWNYIDKCWEALKGGGRFATVCPTTNQ--VQETLKKLQELPFIRIEV  236 (277)
T ss_dssp             CSCCSEEEEEECC-----SCGGGTHHHHHHHEEEEEEEEEEESSHHH--HHHHHHHHHHSSEEEEEE
T ss_pred             ccCCccCEEEECC-----cCHHHHHHHHHHHcCCCCEEEEEeCCHHH--HHHHHHHHHHCCCceeEE
Confidence            2245799999853     46678999999999999999888764321  234444443 46765443

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.37  E-value=5e-12  Score=100.57  Aligned_cols=116  Identities=7%  Similarity=-0.044  Sum_probs=80.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||||||+|..++.++..+  ..|+++|+++ +++.+++++..+....    .......++.+...|..+......
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~~~~~~~nv~~~~~D~~~~l~~~~  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNT----ASKHGFQNINVLRGNAMKFLPNFF  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-----CCSTTTTEEEEECCTTSCGGGTS
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhcc----ccccCCCcEEEEeccHHHHHHHhc
Confidence            56799999999999999999886  3699999955 9999999987762100    000013478888888764321113


Q ss_pred             cCCCccEEEEecc--ccCCc------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          119 VAPPFDYIIGTDV--VYAEH------LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       119 ~~~~fD~Ii~~~~--~~~~~------~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..+.+|.|+...+  .+...      ....++..+.++|+|||.+++....
T Consensus       125 ~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~  175 (246)
T 2vdv_E          125 EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV  175 (246)
T ss_dssp             CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence            3568999886522  11000      1258999999999999999886543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.37  E-value=1.4e-12  Score=102.10  Aligned_cols=106  Identities=14%  Similarity=0.083  Sum_probs=82.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~  116 (199)
                      ++++|||+|||+|..++.+++.   +.+|+++|++ .+++.+++++..++.           ..++++...|..+.. ..
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~~d~~~~~~~~  137 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----------EHKIDLRLKPALETLDEL  137 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----------CCeEEEEEcCHHHHHHHH
Confidence            5789999999999999999975   5689999995 599999999987753           347888887764221 11


Q ss_pred             cccC--CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~--~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ....  +.||+|++...   ......+++.+.++|+|||.+++....
T Consensus       138 ~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          138 LAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             HHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             HhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            1011  68999999754   456788999999999999998886544

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.36  E-value=4.3e-12  Score=102.92  Aligned_cols=106  Identities=10%  Similarity=0.025  Sum_probs=83.3

Q ss_pred             CCcEEEeCCCc---ChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           43 GKRVIELGAGC---GVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        43 ~~~VLdlGcG~---G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ..+|||||||+   |..+..+++.  +++|+++|++ .|++.+++++...              .++++...|+.+....
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~--------------~~v~~~~~D~~~~~~~  143 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD--------------PNTAVFTADVRDPEYI  143 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC--------------TTEEEEECCTTCHHHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC--------------CCeEEEEeeCCCchhh
Confidence            36999999999   9877666654  6789999995 5999999887322              3688888887653211


Q ss_pred             --------cccCCCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 --------KAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 --------~~~~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                              .....+||+|+++.++++..+  ...+++.+.++|+|||.++++....
T Consensus       144 ~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          144 LNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             HHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             hccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence                    112248999999999988554  8999999999999999999998765

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.36  E-value=3e-13  Score=115.40  Aligned_cols=101  Identities=12%  Similarity=0.168  Sum_probs=78.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC--ccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE--DHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~  118 (199)
                      ++.+|||||||+|..+..++..|.+|+++|+++ +++.|+++    +.               ......+...  ...+.
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~---------------~~~~~~~~~~~~~~l~~  167 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GI---------------RVRTDFFEKATADDVRR  167 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TC---------------CEECSCCSHHHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CC---------------CcceeeechhhHhhccc
Confidence            578999999999999999999999999999955 88888765    21               1111111000  11122


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..++||+|++..+++|..++..+++.+.++|+|||.+++..+.
T Consensus       168 ~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          168 TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            3578999999999999999999999999999999999998764

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.36  E-value=1.5e-12  Score=111.80  Aligned_cols=111  Identities=19%  Similarity=0.331  Sum_probs=80.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-CC-eEEEeechh-HHHHH-------HHHHHHhhhccccCCCCCCCCCcEEEEEee-
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQIE-VLPLL-------KRNVEWNTSRISQMNPGSDLLGSIQAVELD-  109 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g~-~v~~~D~~~-~l~~a-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d-  109 (199)
                      -++.+|||||||+|.+++.+|.. ++ +|+|+|+++ +++.|       +.++...+..          ..++++...| 
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~----------~~nV~~i~gD~  310 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR----------LNNVEFSLKKS  310 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC----------CCCEEEEESSC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC----------CCceEEEEcCc
Confidence            36789999999999999999985 54 699999954 88888       7777666521          2467777643 


Q ss_pred             eCCCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          110 WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       110 ~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      +..........++||+|+++..++ ..++..++..+.+.|+|||.+++..+..
T Consensus       311 ~~~~~~~~~~~~~FDvIvvn~~l~-~~d~~~~L~el~r~LKpGG~lVi~d~f~  362 (433)
T 1u2z_A          311 FVDNNRVAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVGCKIISLKSLR  362 (433)
T ss_dssp             STTCHHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             cccccccccccCCCCEEEEeCccc-cccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence            221111111236899999887664 4677788899999999999999875443

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.36  E-value=1.5e-12  Score=103.26  Aligned_cols=132  Identities=14%  Similarity=0.112  Sum_probs=80.2

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEE-EeeeCCCcc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-ELDWGNEDH  115 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~d~~~~~~  115 (199)
                      ...++++|||||||+|..+..++..|+ +|+++|+++ +++.++++...                 +... ..++.....
T Consensus        34 ~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~-----------------~~~~~~~~~~~~~~   96 (232)
T 3opn_A           34 LEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER-----------------VVVMEQFNFRNAVL   96 (232)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT-----------------EEEECSCCGGGCCG
T ss_pred             CCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc-----------------ccccccceEEEeCH
Confidence            345788999999999999999999886 799999965 88887664221                 1110 111111110


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec---------------Chh----HHHHHHHHH-H
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR---------------STS----VHEQMLQMW-K  175 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~---------------~~~----~~~~~~~~~-~  175 (199)
                      .......||.+...-++.   .+..++..+.++|+|||.+++.....               ...    ..+.+.+.+ .
T Consensus        97 ~~~~~~~~d~~~~D~v~~---~l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~  173 (232)
T 3opn_A           97 ADFEQGRPSFTSIDVSFI---SLDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQ  173 (232)
T ss_dssp             GGCCSCCCSEEEECCSSS---CGGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             hHcCcCCCCEEEEEEEhh---hHHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchhHHHHHHHHHHHHH
Confidence            001112356554433322   24889999999999999988863210               011    123344444 3


Q ss_pred             hCCeEEEecCCCcCc
Q 029065          176 SNFNVKLVPKAKEST  190 (199)
Q Consensus       176 ~~~~v~~~~~~~~~~  190 (199)
                      .||++..+..+...-
T Consensus       174 aGf~v~~~~~~pi~g  188 (232)
T 3opn_A          174 LGFSVKGLTFSPIKG  188 (232)
T ss_dssp             HTEEEEEEEECSSCB
T ss_pred             CCCEEEEEEEccCCC
Confidence            589988777665543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.36  E-value=5.7e-12  Score=104.37  Aligned_cols=102  Identities=12%  Similarity=0.053  Sum_probs=83.9

Q ss_pred             CcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           44 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      .+|||+|||+|..+..++..  +.+++++|++.+++.+++++...+.           ..++++...|+...  .   .+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~---~~  232 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLA-----------GERVSLVGGDMLQE--V---PS  232 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHH-----------TTSEEEEESCTTTC--C---CS
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCC-----------CCcEEEecCCCCCC--C---CC
Confidence            79999999999999999876  5679999995599999998876654           34789988887542  1   25


Q ss_pred             CccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          122 PFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .||+|++..++++..+  ...+++.+.+.|+|||.+++.+..
T Consensus       233 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          233 NGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             SCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            7999999999976554  449999999999999999998754

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.36  E-value=9.6e-12  Score=107.04  Aligned_cols=125  Identities=12%  Similarity=0.146  Sum_probs=91.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-cccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~  119 (199)
                      .+.+|||+|||+|.+++.++..+.+|+++|+++ +++.|++|+..++.            .++++...|+.+... ....
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~------------~~v~f~~~d~~~~l~~~~~~  353 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL------------QNVTFYHENLEEDVTKQPWA  353 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCTTSCCSSSGGG
T ss_pred             CCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEECCHHHHhhhhhhh
Confidence            467999999999999999999888999999954 99999999988863            478999988865321 1223


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEecC
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPK  185 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~~  185 (199)
                      .+.||+|+++++....   ..+++.+.+ ++|++.+|++....   .+.+-+..+ ..+|.+..+..
T Consensus       354 ~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc~p~---tlard~~~l~~~Gy~~~~~~~  413 (433)
T 1uwv_A          354 KNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSCNPA---TLARDSEALLKAGYTIARLAM  413 (433)
T ss_dssp             TTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEESCHH---HHHHHHHHHHHTTCEEEEEEE
T ss_pred             cCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEECChH---HHHhhHHHHHHCCcEEEEEEE
Confidence            4689999998775433   256666654 68999999876432   222323333 45788876543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.35  E-value=4.1e-12  Score=100.55  Aligned_cols=105  Identities=14%  Similarity=0.075  Sum_probs=80.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~  116 (199)
                      ++++|||||||+|..++.+++.   +.+|+++|++ .+++.|++++..++.           ..++++...|...... .
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~~~~~  128 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL-----------ENKIFLKLGSALETLQVL  128 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCEEEEECCHHHHHHHH
Confidence            4789999999999999999987   5689999995 599999999887753           2357888777642110 1


Q ss_pred             c-----------cc-C-CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          117 K-----------AV-A-PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       117 ~-----------~~-~-~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      .           .. . ++||+|++..   .......+++.+.++|+|||.+++...
T Consensus       129 ~~~~~~~~~~~~f~~~~~~fD~I~~~~---~~~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          129 IDSKSAPSWASDFAFGPSSIDLFFLDA---DKENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             HHCSSCCGGGTTTCCSTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             HhhcccccccccccCCCCCcCEEEEeC---CHHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence            0           01 2 6899999873   345677899999999999999998763

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.35  E-value=6.2e-13  Score=103.54  Aligned_cols=107  Identities=11%  Similarity=0.080  Sum_probs=74.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||||||+|..+..++..  +.+|+++|+++ +++.+.+++..+...        ....++++...|..+..   .
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~--------~~~~~v~~~~~d~~~l~---~   95 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAK--------GGLPNLLYLWATAERLP---P   95 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGG--------TCCTTEEEEECCSTTCC---S
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhh--------cCCCceEEEecchhhCC---C
Confidence            5679999999999999999988  67899999954 888654443322110        11347888888876543   2


Q ss_pred             cCCCccEEEEecc---cc--CCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          119 VAPPFDYIIGTDV---VY--AEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       119 ~~~~fD~Ii~~~~---~~--~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..+. |.|...-+   .+  +..+...+++.+.++|+|||.+++...
T Consensus        96 ~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (218)
T 3mq2_A           96 LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN  141 (218)
T ss_dssp             CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence            2334 66653321   11  334558999999999999999999764

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.35  E-value=3.7e-12  Score=100.56  Aligned_cols=102  Identities=19%  Similarity=0.242  Sum_probs=78.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhC-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLG-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++.+|||+|||+|..+..+++.+ .+|+++|++ .+++.+++++...+            ..++++...|+..  .. .
T Consensus        90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~------------~~~v~~~~~d~~~--~~-~  154 (235)
T 1jg1_A           90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG------------VKNVHVILGDGSK--GF-P  154 (235)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT------------CCSEEEEESCGGG--CC-G
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC------------CCCcEEEECCccc--CC-C
Confidence            356799999999999999999876 789999985 59999999988775            3357887777521  11 1


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      ...+||+|+++.++.+..      ..+.+.|+|||.+++......
T Consensus       155 ~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~~  193 (235)
T 1jg1_A          155 PKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSYH  193 (235)
T ss_dssp             GGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECSSS
T ss_pred             CCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEecCC
Confidence            234699999987765432      367889999999999887543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.35  E-value=5.8e-12  Score=104.45  Aligned_cols=127  Identities=15%  Similarity=0.076  Sum_probs=89.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHH--hhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEW--NTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++|||||||+|..+..+++.  +.+|+++|++ .+++.|++++..  ++..          ..++++...|+...  .
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~----------~~~v~~~~~D~~~~--l  183 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE----------DKRVNVFIEDASKF--L  183 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG----------STTEEEEESCHHHH--H
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC----------CCcEEEEEccHHHH--H
Confidence            4679999999999999999976  4679999995 499999998754  2211          24788888776432  1


Q ss_pred             cccCCCccEEEEecccc--CCcC--hHHHHHHHHHhcCCCcEEEEEEEec--ChhHHHHHHHHHHhCCeE
Q 029065          117 KAVAPPFDYIIGTDVVY--AEHL--LEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~--~~~~--~~~~l~~l~~~l~~~g~i~i~~~~~--~~~~~~~~~~~~~~~~~v  180 (199)
                      ....++||+|+++.+-.  ....  ...+++.+.++|+|||.+++.....  .......+.+.+.+.|..
T Consensus       184 ~~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  253 (321)
T 2pt6_A          184 ENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKK  253 (321)
T ss_dssp             HHCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             hhcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCC
Confidence            11246899999875311  1111  1789999999999999988865432  233455666666665543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.34  E-value=4e-12  Score=94.65  Aligned_cols=115  Identities=16%  Similarity=0.151  Sum_probs=82.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc---
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---  115 (199)
                      ++.+|||+|||+|..+..+++. |  .+|+++|++++++.                      .++++...|+.+...   
T Consensus        22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~----------------------~~~~~~~~d~~~~~~~~~   79 (180)
T 1ej0_A           22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI----------------------VGVDFLQGDFRDELVMKA   79 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC----------------------TTEEEEESCTTSHHHHHH
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc----------------------CcEEEEEcccccchhhhh
Confidence            5679999999999999999976 3  67999998554211                      256777777654320   


Q ss_pred             cc--ccCCCccEEEEeccccCCcCh-----------HHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeE
Q 029065          116 IK--AVAPPFDYIIGTDVVYAEHLL-----------EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       116 ~~--~~~~~fD~Ii~~~~~~~~~~~-----------~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v  180 (199)
                      ..  ...++||+|+++.++++....           ..++..+.++|+|||.+++........  ..+.+.+...|..
T Consensus        80 ~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~--~~~~~~~~~~~~~  155 (180)
T 1ej0_A           80 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGF--DEYLREIRSLFTK  155 (180)
T ss_dssp             HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTH--HHHHHHHHHHEEE
T ss_pred             hhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcH--HHHHHHHHHhhhh
Confidence            00  234689999999888766554           789999999999999999887755432  3444445444544

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.34  E-value=1.6e-12  Score=102.54  Aligned_cols=102  Identities=15%  Similarity=0.068  Sum_probs=70.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHh--hCCeEEEeech-h-HHHHH---HHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           42 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQI-E-VLPLL---KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~--~g~~v~~~D~~-~-~l~~a---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ++.+|||||||+|..++.+++  .+++|+|+|++ + +++.|   ++++...+            ..++.+...|.....
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~------------~~~v~~~~~d~~~l~   91 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG------------LSNVVFVIAAAESLP   91 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC------------CSSEEEECCBTTBCC
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC------------CCCeEEEEcCHHHhh
Confidence            467999999999999999994  46779999996 6 76666   66655544            346888887775442


Q ss_pred             cccccCCCccEEEEeccccC-----CcChHHHHHHHHHhcCCCcEEEE
Q 029065          115 HIKAVAPPFDYIIGTDVVYA-----EHLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~-----~~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      .  .....+|.|.++.+...     ......++..+.++|+|||.+++
T Consensus        92 ~--~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           92 F--ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             G--GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             h--hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            1  11244555555432211     12346789999999999999988

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.34  E-value=6.1e-12  Score=101.91  Aligned_cols=109  Identities=12%  Similarity=0.042  Sum_probs=82.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--C-CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--G-CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g-~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-  116 (199)
                      ++.+|||+|||+|..+..++..  + .+|+++|+++ +++.+++|+..++.            .++++...|....... 
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~------------~~v~~~~~D~~~~~~~~  150 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV------------LNTIIINADMRKYKDYL  150 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCHHHHHHHH
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC------------CcEEEEeCChHhcchhh
Confidence            5789999999999999999863  4 6799999954 99999999988763            3688888776432110 


Q ss_pred             cccCCCccEEEEeccccCC------------------cChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 KAVAPPFDYIIGTDVVYAE------------------HLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~------------------~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ....+.||+|+++.+....                  .....+++.+.++|+|||.++++....
T Consensus       151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            0014689999998665432                  345789999999999999998877543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.33  E-value=1e-11  Score=102.17  Aligned_cols=132  Identities=14%  Similarity=-0.016  Sum_probs=87.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++++|||||||+|..+..+++.  ..+|+++|+++ +++.+++++......        ....++++...|....... .
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~--------~~~~~v~~~~~D~~~~~~~-~  165 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRS--------LADPRATVRVGDGLAFVRQ-T  165 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG--------GGCTTEEEEESCHHHHHHS-S
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcc--------cCCCcEEEEECcHHHHHHh-c
Confidence            5679999999999999999976  45799999954 999999987431100        0034788888776432110 0


Q ss_pred             cCCCccEEEEeccccCCcC----hHHHHHHHHHhcCCCcEEEEEEEec--ChhHHHHHHHHHHh-CCeEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHL----LEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKS-NFNVKL  182 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~----~~~~l~~l~~~l~~~g~i~i~~~~~--~~~~~~~~~~~~~~-~~~v~~  182 (199)
                      ..++||+|+++.+......    ...+++.+.++|+|||.+++.....  .......+.+.+.+ +|....
T Consensus       166 ~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~  236 (304)
T 3bwc_A          166 PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQ  236 (304)
T ss_dssp             CTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEE
T ss_pred             cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEE
Confidence            2568999999765433221    1689999999999999988875542  22234455555544 576543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.33  E-value=1.5e-11  Score=105.68  Aligned_cols=98  Identities=20%  Similarity=0.262  Sum_probs=77.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|.+++.+|+.+.+|+++|++ ++++.|++|+..|+            .. +++...|..+..     .
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ng------------l~-v~~~~~d~~~~~-----~  351 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINN------------VD-AEFEVASDREVS-----V  351 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT------------CC-EEEEECCTTTCC-----C
T ss_pred             CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcC------------Cc-EEEEECChHHcC-----c
Confidence            56799999999999999999998899999995 49999999998886            23 788887776432     1


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..||+|+++++..  .....+++.+.. |+|+|.+|++..
T Consensus       352 ~~fD~Vv~dPPr~--g~~~~~~~~l~~-l~p~givyvsc~  388 (425)
T 2jjq_A          352 KGFDTVIVDPPRA--GLHPRLVKRLNR-EKPGVIVYVSCN  388 (425)
T ss_dssp             TTCSEEEECCCTT--CSCHHHHHHHHH-HCCSEEEEEESC
T ss_pred             cCCCEEEEcCCcc--chHHHHHHHHHh-cCCCcEEEEECC
Confidence            2899999987632  233457777754 899999999764

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.32  E-value=4.3e-12  Score=100.64  Aligned_cols=104  Identities=13%  Similarity=0.031  Sum_probs=80.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~  116 (199)
                      ++++|||||||+|..++.+++.   +.+|+++|++ ++++.|++++...+.           ..++++...|..+... .
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~l~~l  138 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV-----------EHKINFIESDAMLALDNL  138 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence            5679999999999999999976   6789999995 599999999988764           2368888877643211 1


Q ss_pred             cc---cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ~~---~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..   ..+.||+|++..   .......+++.+.++|+|||.+++..
T Consensus       139 ~~~~~~~~~fD~I~~d~---~~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          139 LQGQESEGSYDFGFVDA---DKPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             HHSTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HhccCCCCCcCEEEECC---chHHHHHHHHHHHHhcCCCeEEEEec
Confidence            00   146899999864   24567899999999999999988765

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.32  E-value=9.1e-12  Score=104.16  Aligned_cols=104  Identities=15%  Similarity=0.087  Sum_probs=84.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||||||+|..+..++..+  .+++++|++.+++.+++++..++.           ..++++...|+.+.  .   
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~---  246 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL-----------SDRVDVVEGDFFEP--L---  246 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--C---
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCC-----------CCceEEEeCCCCCC--C---
Confidence            46799999999999999999774  469999995599999999877653           34789998887532  1   


Q ss_pred             CCCccEEEEeccccCCcCh--HHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~--~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ...||+|+++.++++..+.  ..+++.+.++|+|||.+++.+..
T Consensus       247 ~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          247 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            2349999999999876544  58999999999999999988765

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.32  E-value=2.7e-12  Score=101.36  Aligned_cols=107  Identities=17%  Similarity=0.114  Sum_probs=81.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~  116 (199)
                      ++++|||+|||+|..++.++..   +.+|+++|++ ++++.|++++...+.           ..++++...|..+.. ..
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~~d~~~~l~~l  140 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV-----------AEKISLRLGPALATLEQL  140 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence            5679999999999999999976   5689999995 499999999887753           236888877654211 11


Q ss_pred             cccC--CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 KAVA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 ~~~~--~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ....  +.||+|++...   ......+++.+.++|+|||.+++....+
T Consensus       141 ~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~  185 (232)
T 3cbg_A          141 TQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVLW  185 (232)
T ss_dssp             HTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred             HhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            1112  68999998754   4577889999999999999998865443

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.31  E-value=7.2e-12  Score=98.05  Aligned_cols=109  Identities=17%  Similarity=0.214  Sum_probs=80.2

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCC-------eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGC-------NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~-------~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      ..++.+|||||||+|..+..++..+.       +|+++|++ .+++.|++++..++...       -...++++...|..
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-------~~~~~v~~~~~d~~  150 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL-------LKIDNFKIIHKNIY  150 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGG-------GSSTTEEEEECCGG
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccc-------cccCCEEEEECChH
Confidence            34578999999999999999998754       89999995 59999999987764100       00236788887765


Q ss_pred             CCcc-ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          112 NEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       112 ~~~~-~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .... .....++||+|++..++.+      ++..+.++|+|||.+++....
T Consensus       151 ~~~~~~~~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          151 QVNEEEKKELGLFDAIHVGASASE------LPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             GCCHHHHHHHCCEEEEEECSBBSS------CCHHHHHHEEEEEEEEEEEEE
T ss_pred             hcccccCccCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEEEEcc
Confidence            3210 0022468999999877653      357888999999999998875

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.31  E-value=1.4e-11  Score=101.02  Aligned_cols=126  Identities=13%  Similarity=0.023  Sum_probs=85.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHH--hhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEW--NTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+++|||||||+|..+..+++.  ..+|+++|++ .+++.|++++..  ++..          ..++++...|....  .
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~----------~~~v~~~~~D~~~~--l  157 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD----------DPRAEIVIANGAEY--V  157 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG----------CTTEEEEESCHHHH--G
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC----------CCceEEEECcHHHH--H
Confidence            4679999999999999999987  3579999995 499999998754  2211          24788888776432  1


Q ss_pred             cccCCCccEEEEeccccCCc-----ChHHHHHHHHHhcCCCcEEEEEEEe--cChhHHHHHHHHHHhCCe
Q 029065          117 KAVAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN  179 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~-----~~~~~l~~l~~~l~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~~  179 (199)
                      ....++||+|+++.+-.+..     ....+++.+.++|+|||.+++....  ..........+.+.+.|.
T Consensus       158 ~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~  227 (296)
T 1inl_A          158 RKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFP  227 (296)
T ss_dssp             GGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCS
T ss_pred             hhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCC
Confidence            12246899999864321011     3478999999999999998887543  223334445555554443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.31  E-value=1.5e-11  Score=99.25  Aligned_cols=103  Identities=18%  Similarity=0.152  Sum_probs=81.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHh-h-hccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWN-T-SRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      .++.+|||+|||+|..+..++..   +.+|+++|++ .+++.|++++..+ + .           ..++++...|+.+. 
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~-----------~~~v~~~~~d~~~~-  165 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP-----------PDNWRLVVSDLADS-  165 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC-----------CTTEEEECSCGGGC-
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-----------CCcEEEEECchHhc-
Confidence            35779999999999999999985   5689999995 5999999998776 3 1           23678887776533 


Q ss_pred             cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          115 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                        ....+.||+|+++.     .+...++..+.++|+|||.+++..+..
T Consensus       166 --~~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          166 --ELPDGSVDRAVLDM-----LAPWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             --CCCTTCEEEEEEES-----SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             --CCCCCceeEEEECC-----cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence              22256899999853     366689999999999999998887654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.29  E-value=2.3e-11  Score=98.65  Aligned_cols=129  Identities=11%  Similarity=-0.012  Sum_probs=88.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++++|||||||+|..+..+++. + .+|+++|++ .+++.|++++......        -...++++...|....  ...
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~--------~~~~rv~v~~~D~~~~--l~~  144 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK--------LDDPRVDVQVDDGFMH--IAK  144 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT--------TTSTTEEEEESCSHHH--HHT
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccc--------cCCCceEEEECcHHHH--Hhh
Confidence            5689999999999999999987 4 579999995 5999999987542100        0134788888775421  112


Q ss_pred             cCCCccEEEEeccccCCc----ChHHHHHHHHHhcCCCcEEEEEEEe--cChhHHHHHHHHHHhCCeE
Q 029065          119 VAPPFDYIIGTDVVYAEH----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~----~~~~~l~~l~~~l~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~~v  180 (199)
                      ..++||+|+++.+.....    ....+++.+.++|+|||.+++....  ..........+.+.+.|..
T Consensus       145 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  212 (275)
T 1iy9_A          145 SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPI  212 (275)
T ss_dssp             CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             CCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCC
Confidence            246899999964432111    1378999999999999998886533  2233445555666666643

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.29  E-value=1.7e-11  Score=100.87  Aligned_cols=125  Identities=16%  Similarity=0.055  Sum_probs=83.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHHH--hhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEW--NTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+++|||||||+|..+..+++..  .+|+++|++ .+++.|++++..  ++..          ..++++...|....  .
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~----------~~rv~v~~~Da~~~--l  162 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS----------SSKLTLHVGDGFEF--M  162 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG----------CTTEEEEESCHHHH--H
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC----------CCcEEEEECcHHHH--H
Confidence            56899999999999999999874  579999995 599999998765  2211          24788887765421  1


Q ss_pred             cccCCCccEEEEeccccCC----cChHHHHHHHHHhcCCCcEEEEEEEe--cChhHHHHHHHHHHhCC
Q 029065          117 KAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF  178 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~  178 (199)
                      ....++||+|+++.+....    .....+++.+.++|+|||.+++....  ........+.+.+..-|
T Consensus       163 ~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f  230 (304)
T 2o07_A          163 KQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLF  230 (304)
T ss_dssp             HTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHC
T ss_pred             hhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhC
Confidence            1235689999986543211    12467899999999999998887643  22233334444444434

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.28  E-value=1.5e-11  Score=100.52  Aligned_cols=129  Identities=15%  Similarity=0.083  Sum_probs=82.9

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEE-EEeeeCCCccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-VELDWGNEDHI  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~d~~~~~~~  116 (199)
                      .+++++|||+|||||.++..++..|+ +|+++|++. |++.+.++   +              .++.. ...++......
T Consensus        83 ~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~--------------~rv~~~~~~ni~~l~~~  145 (291)
T 3hp7_A           83 SVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D--------------DRVRSMEQYNFRYAEPV  145 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C--------------TTEEEECSCCGGGCCGG
T ss_pred             CccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C--------------cccceecccCceecchh
Confidence            45789999999999999999998886 699999955 88775432   1              12211 11122111111


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe---------------cChh----HHHHHHHHH-Hh
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI---------------RSTS----VHEQMLQMW-KS  176 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~---------------~~~~----~~~~~~~~~-~~  176 (199)
                      ......||+|++.-.+.   .+..++..+.++|+|||.+++...+               +.+.    ..+.+...+ ..
T Consensus       146 ~l~~~~fD~v~~d~sf~---sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~  222 (291)
T 3hp7_A          146 DFTEGLPSFASIDVSFI---SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDY  222 (291)
T ss_dssp             GCTTCCCSEEEECCSSS---CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             hCCCCCCCEEEEEeeHh---hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHHHC
Confidence            11233599999865443   4689999999999999998887322               1111    123344443 35


Q ss_pred             CCeEEEecCCCc
Q 029065          177 NFNVKLVPKAKE  188 (199)
Q Consensus       177 ~~~v~~~~~~~~  188 (199)
                      +|.+..+..+.+
T Consensus       223 Gf~v~~~~~spi  234 (291)
T 3hp7_A          223 GFSVKGLDFSPI  234 (291)
T ss_dssp             TEEEEEEEECSS
T ss_pred             CCEEEEEEECCC
Confidence            899887777655

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.28  E-value=1.7e-11  Score=94.22  Aligned_cols=115  Identities=17%  Similarity=0.263  Sum_probs=80.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc----
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK----  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~----  117 (199)
                      ++.+|||||||+|.++..++..+++|+++|++++.          .            ..++++.+.|+.+.....    
T Consensus        25 ~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~----------~------------~~~v~~~~~D~~~~~~~~~~~~   82 (191)
T 3dou_A           25 KGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME----------E------------IAGVRFIRCDIFKETIFDDIDR   82 (191)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC----------C------------CTTCEEEECCTTSSSHHHHHHH
T ss_pred             CCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc----------c------------CCCeEEEEccccCHHHHHHHHH
Confidence            57899999999999999999988899999986530          0            236788888876543211    


Q ss_pred             ccC----CCccEEEEeccccCCc-----------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeE
Q 029065          118 AVA----PPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       118 ~~~----~~fD~Ii~~~~~~~~~-----------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v  180 (199)
                      ...    ++||+|+++.......           ....++....++|+|||.+++.......  ...+...+...|.-
T Consensus        83 ~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~--~~~~~~~l~~~F~~  158 (191)
T 3dou_A           83 ALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM--TNDFIAIWRKNFSS  158 (191)
T ss_dssp             HHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH--HHHHHHHHGGGEEE
T ss_pred             HhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC--HHHHHHHHHHhcCE
Confidence            011    4899999975432211           2356788888999999998876654333  35566666666643

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.28  E-value=3e-11  Score=99.80  Aligned_cols=128  Identities=15%  Similarity=0.080  Sum_probs=88.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHH-hhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .+++|||||||+|..+..+++.  +.+|+++|++ .+++.|++++.. +.-..        ...++++...|....  ..
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~--------~~~~v~~~~~D~~~~--l~  146 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF--------DDPRAVLVIDDARAY--LE  146 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG--------GCTTEEEEESCHHHH--HH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccc--------cCCceEEEEchHHHH--HH
Confidence            4679999999999999999976  4579999995 499999998754 21000        024788888776432  12


Q ss_pred             ccCCCccEEEEeccccC---C--c--ChHHHHHHHHHhcCCCcEEEEEEEec---ChhHHHHHHHHHHhCCe
Q 029065          118 AVAPPFDYIIGTDVVYA---E--H--LLEPLLQTIFALSGPKTTILLGYEIR---STSVHEQMLQMWKSNFN  179 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~---~--~--~~~~~l~~l~~~l~~~g~i~i~~~~~---~~~~~~~~~~~~~~~~~  179 (199)
                      ...++||+|+++.+...   .  .  ....+++.+.++|+|||.+++.....   .......+.+.+..-|.
T Consensus       147 ~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~  218 (314)
T 1uir_A          147 RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFR  218 (314)
T ss_dssp             HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCS
T ss_pred             hcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCC
Confidence            23568999999755432   1  1  14789999999999999988765432   22334555566665553

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.28  E-value=7.1e-12  Score=101.75  Aligned_cols=116  Identities=19%  Similarity=0.196  Sum_probs=77.7

Q ss_pred             CCCcEEEeCCCcCh----HHHHHHhh-C-----CeEEEeechh-HHHHHHHHHHHhh----hcc----ccC---CCC-C-
Q 029065           42 KGKRVIELGAGCGV----AGFGMALL-G-----CNVITTDQIE-VLPLLKRNVEWNT----SRI----SQM---NPG-S-   97 (199)
Q Consensus        42 ~~~~VLdlGcG~G~----~sl~la~~-g-----~~v~~~D~~~-~l~~a~~~~~~~~----~~~----~~~---~~~-~-   97 (199)
                      ++.+|||+|||||.    +++.++.. +     .+|+++|+++ |++.|++++-...    .+.    +.+   ... + 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35699999999997    56666654 3     4799999955 9999998752100    000    000   000 0 


Q ss_pred             ------CCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEE
Q 029065           98 ------DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus        98 ------~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                            ....++.+.+.|+.+...  ...++||+|+|..++.+.  .....++..+.+.|+|||.+++..
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~--~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~  252 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQY--NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  252 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSC--CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             ceeechhhcccCeEEecccCCCCC--CcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence                  001368888888865311  114689999999887553  345899999999999999988843

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.28  E-value=9.5e-12  Score=96.49  Aligned_cols=110  Identities=10%  Similarity=0.021  Sum_probs=79.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .++.+|||||||+|..+..+   +.+|+++|+++.          +                +.+...|+.+   .+...
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~----------~----------------~~~~~~d~~~---~~~~~  113 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSI---RNPVHCFDLASL----------D----------------PRVTVCDMAQ---VPLED  113 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS----------S----------------TTEEESCTTS---CSCCT
T ss_pred             CCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC----------C----------------ceEEEecccc---CCCCC
Confidence            35679999999999988776   368999998553          1                2344555543   22335


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEe
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  183 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~  183 (199)
                      +.||+|+++.+++ ..+...+++.+.++|+|||.+++............+.+.+. .+|++...
T Consensus       114 ~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~  176 (215)
T 2zfu_A          114 ESVDVAVFCLSLM-GTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSK  176 (215)
T ss_dssp             TCEEEEEEESCCC-SSCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEE
T ss_pred             CCEeEEEEehhcc-ccCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEE
Confidence            6899999999886 48899999999999999999999876543222344555553 46777554

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.27  E-value=1.1e-11  Score=99.47  Aligned_cols=96  Identities=11%  Similarity=0.054  Sum_probs=74.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|..+..++..  +.+|+++|+++ +++.++++.                 .++.+...|+...   +.
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~---~~  144 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----------------PQVTFCVASSHRL---PF  144 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCTTSC---SB
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----------------CCcEEEEcchhhC---CC
Confidence            5779999999999999999986  77899999955 888887653                 1456666666432   23


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      ..++||+|+++.+       ..+++.+.++|+|||.+++..+....
T Consensus       145 ~~~~fD~v~~~~~-------~~~l~~~~~~L~pgG~l~~~~~~~~~  183 (269)
T 1p91_A          145 SDTSMDAIIRIYA-------PCKAEELARVVKPGGWVITATPGPRH  183 (269)
T ss_dssp             CTTCEEEEEEESC-------CCCHHHHHHHEEEEEEEEEEEECTTT
T ss_pred             CCCceeEEEEeCC-------hhhHHHHHHhcCCCcEEEEEEcCHHH
Confidence            3568999998754       23588999999999999999887543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.27  E-value=2.3e-11  Score=102.74  Aligned_cols=101  Identities=16%  Similarity=0.148  Sum_probs=77.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|.+++.++..+.  +|+++|+++ +++.|+.|+..++.           ..++++.+.|..+.   ..
T Consensus       217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl-----------~~~i~~~~~D~~~~---~~  282 (373)
T 3tm4_A          217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV-----------LDKIKFIQGDATQL---SQ  282 (373)
T ss_dssp             CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTC-----------GGGCEEEECCGGGG---GG
T ss_pred             CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------CCceEEEECChhhC---Cc
Confidence            578999999999999999999887  899999955 99999999988864           24688888887543   23


Q ss_pred             cCCCccEEEEeccccCC----c----ChHHHHHHHHHhcCCCcEEEE
Q 029065          119 VAPPFDYIIGTDVVYAE----H----LLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~----~----~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      ..+.||+|++++++...    .    .+..+++.+.++| +++.+++
T Consensus       283 ~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i  328 (373)
T 3tm4_A          283 YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI  328 (373)
T ss_dssp             TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred             ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence            34789999999886431    1    1467888888888 3334444

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.26  E-value=2.1e-11  Score=99.17  Aligned_cols=131  Identities=17%  Similarity=0.033  Sum_probs=85.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC-CeEEEeech-hHHHHHHHHHHHh--hhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQI-EVLPLLKRNVEWN--TSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g-~~v~~~D~~-~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .+++|||||||+|..+..+++.+ .+|+++|++ .+++.|++++ ..  +.. + . ...+...++++...|....  ..
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~-~-~-~~~~~~~~v~~~~~D~~~~--l~  148 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLL-E-A-MLNGKHEKAKLTIGDGFEF--IK  148 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHH-H-H-HHTTCCSSEEEEESCHHHH--HH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccc-c-c-cccCCCCcEEEEECchHHH--hc
Confidence            56899999999999999999875 469999995 5999999987 22  110 0 0 0000134788887665321  11


Q ss_pred             ccCCCccEEEEeccccC--CcC--hHHHHHHHHHhcCCCcEEEEEEEec--ChhHHHHHHHHHHhCCe
Q 029065          118 AVAPPFDYIIGTDVVYA--EHL--LEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN  179 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~--~~~--~~~~l~~l~~~l~~~g~i~i~~~~~--~~~~~~~~~~~~~~~~~  179 (199)
                      . .++||+|+++.+...  ...  ...+++.+.++|+|||.+++.....  .......+.+.+...|.
T Consensus       149 ~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~  215 (281)
T 1mjf_A          149 N-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFD  215 (281)
T ss_dssp             H-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCS
T ss_pred             c-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCC
Confidence            2 568999998754321  112  3788999999999999988865432  33334455555544454

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.26  E-value=1.4e-11  Score=96.32  Aligned_cols=105  Identities=23%  Similarity=0.256  Sum_probs=77.8

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++.+|||+|||+|..+..++.. |  .+|+++|++ .+++.+++++..++...       -...++.+...|....   
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-------~~~~~v~~~~~d~~~~---  145 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL-------LSSGRVQLVVGDGRMG---  145 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHH-------HHTSSEEEEESCGGGC---
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc-------cCCCcEEEEECCcccC---
Confidence            45789999999999999999976 4  589999995 59999999887653100       0023678888776522   


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ....++||+|++..++.      .++..+.++|+|||.++++...
T Consensus       146 ~~~~~~fD~i~~~~~~~------~~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          146 YAEEAPYDAIHVGAAAP------VVPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             CGGGCCEEEEEECSBBS------SCCHHHHHTEEEEEEEEEEESC
T ss_pred             cccCCCcCEEEECCchH------HHHHHHHHhcCCCcEEEEEEec
Confidence            12246899999887653      3346788999999999998764

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.26  E-value=1.9e-11  Score=101.93  Aligned_cols=107  Identities=15%  Similarity=0.028  Sum_probs=78.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHh--hhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWN--TSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+++|||||||+|..+..+++.  +.+|+++|+++ +++.|++++...  +..          ..++++...|+..... 
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~----------~~rv~~~~~D~~~~l~-  188 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE----------DPRVNLVIGDGVAFLK-  188 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG----------STTEEEEESCHHHHHH-
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC----------CCcEEEEECCHHHHHH-
Confidence            4679999999999999999986  46799999955 999999987653  211          2478888887643210 


Q ss_pred             cccCCCccEEEEecc--ccCCcC--hHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 KAVAPPFDYIIGTDV--VYAEHL--LEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~--~~~~~~--~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ....++||+|+++.+  ......  ...+++.+.++|+|||.+++..
T Consensus       189 ~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          189 NAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             TSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             hccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            112468999998643  221121  4789999999999999988863

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.24  E-value=1.3e-11  Score=103.05  Aligned_cols=101  Identities=14%  Similarity=0.084  Sum_probs=77.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+.+|||||||+|..+..+++..  .+++++|++.++.  +.++...+.           ..++++...|+.  +..   
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~-----------~~~v~~~~~d~~--~~~---  245 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDV-----------AGRWKVVEGDFL--REV---  245 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGG-----------TTSEEEEECCTT--TCC---
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCC-----------CCCeEEEecCCC--CCC---
Confidence            46799999999999999999764  4589999876544  222222221           347899988875  111   


Q ss_pred             CCCccEEEEeccccCCcCh--HHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~--~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      . .||+|++..++++..+.  ..+++.+.++|+|||.++|.+..
T Consensus       246 p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~  288 (348)
T 3lst_A          246 P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAV  288 (348)
T ss_dssp             C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred             C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            2 89999999999887766  79999999999999999998754

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.24  E-value=3.8e-11  Score=97.80  Aligned_cols=129  Identities=16%  Similarity=0.087  Sum_probs=88.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++++|||||||+|..+..+++.  +.+|+++|++ .+++.|++++...+...        ...++++...|....  ...
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~--------~~~~v~~~~~D~~~~--l~~  147 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY--------EDKRVNVFIEDASKF--LEN  147 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG--------GSTTEEEEESCHHHH--HHH
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhcccc--------CCCcEEEEECChHHH--HHh
Confidence            5689999999999999999976  3579999995 49999999875431000        024788888776432  111


Q ss_pred             cCCCccEEEEeccccC--CcCh--HHHHHHHHHhcCCCcEEEEEEEec--ChhHHHHHHHHHHhCCeE
Q 029065          119 VAPPFDYIIGTDVVYA--EHLL--EPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~--~~~~--~~~l~~l~~~l~~~g~i~i~~~~~--~~~~~~~~~~~~~~~~~v  180 (199)
                      ..++||+|++..+...  ....  ..+++.+.++|+|||.+++.....  .......+.+.+.+.|..
T Consensus       148 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  215 (283)
T 2i7c_A          148 VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKK  215 (283)
T ss_dssp             CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCc
Confidence            2568999998543221  2222  699999999999999988875432  233345566666655643

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.24  E-value=1.9e-11  Score=101.08  Aligned_cols=106  Identities=14%  Similarity=-0.022  Sum_probs=74.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHh--hhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWN--TSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+++|||||||+|..+..+++.  +.+|+++|++ .+++.|++++...  +..          ..++++...|....  .
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~----------~~rv~~~~~D~~~~--l  175 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS----------HPKLDLFCGDGFEF--L  175 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG----------CTTEEEECSCHHHH--H
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccC----------CCCEEEEEChHHHH--H
Confidence            4579999999999999999976  4679999995 4999999987542  210          24788887776432  1


Q ss_pred             cccCCCccEEEEeccccC--CcC-h-HHHHHHHHHhcCCCcEEEEEE
Q 029065          117 KAVAPPFDYIIGTDVVYA--EHL-L-EPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~--~~~-~-~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ....++||+|+++.+-..  ... . ..+++.+.++|+|||.+++..
T Consensus       176 ~~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          176 KNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             HHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             HhcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            123568999998643211  111 2 789999999999999988865

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.23  E-value=3.8e-11  Score=94.10  Aligned_cols=105  Identities=13%  Similarity=0.147  Sum_probs=77.2

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-C-------CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-G-------CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g-------~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      .++.+|||+|||+|..+..++.. +       .+|+++|++ ++++.+++++..++...       -...++++...|..
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-------~~~~~v~~~~~d~~  155 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM-------LDSGQLLIVEGDGR  155 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH-------HHHTSEEEEESCGG
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccc-------cCCCceEEEECCcc
Confidence            35779999999999999999874 4       489999995 59999999887654100       00126788887765


Q ss_pred             CCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          112 NEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       112 ~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..   ....++||+|++...+.+.      .+.+.+.|+|||.+++....
T Consensus       156 ~~---~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          156 KG---YPPNAPYNAIHVGAAAPDT------PTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             GC---CGGGCSEEEEEECSCBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred             cC---CCcCCCccEEEECCchHHH------HHHHHHHhcCCCEEEEEEec
Confidence            32   1123689999998776542      37788999999999988754

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.22  E-value=7.6e-11  Score=90.30  Aligned_cols=114  Identities=12%  Similarity=0.066  Sum_probs=75.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh----CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc--
Q 029065           42 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~----g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--  115 (199)
                      ++.+|||||||+|.++..++..    +.+|+++|++++.          .            ..++++.+.|+.+...  
T Consensus        22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~------------~~~v~~~~~d~~~~~~~~   79 (201)
T 2plw_A           22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------P------------IPNVYFIQGEIGKDNMNN   79 (201)
T ss_dssp             TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------C------------CTTCEEEECCTTTTSSCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------C------------CCCceEEEccccchhhhh
Confidence            4679999999999999999976    3579999986631          0            1245666666654320  


Q ss_pred             ---------------c-----cccCCCccEEEEeccccCCc----Ch-------HHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          116 ---------------I-----KAVAPPFDYIIGTDVVYAEH----LL-------EPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       116 ---------------~-----~~~~~~fD~Ii~~~~~~~~~----~~-------~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                                     .     ......||+|+++..+.+..    +.       ..++..+.++|+|||.+++.......
T Consensus        80 ~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~  159 (201)
T 2plw_A           80 IKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQ  159 (201)
T ss_dssp             C-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTT
T ss_pred             hccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCC
Confidence                           0     02246899999987654421    11       24788899999999999886554322


Q ss_pred             hHHHHHHHHHHhCCe
Q 029065          165 SVHEQMLQMWKSNFN  179 (199)
Q Consensus       165 ~~~~~~~~~~~~~~~  179 (199)
                        ...+...+...|.
T Consensus       160 --~~~l~~~l~~~f~  172 (201)
T 2plw_A          160 --TNNLKTYLKGMFQ  172 (201)
T ss_dssp             --HHHHHHHHHTTEE
T ss_pred             --HHHHHHHHHHHHh
Confidence              2445555555554

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.22  E-value=1.3e-10  Score=96.52  Aligned_cols=114  Identities=14%  Similarity=0.111  Sum_probs=77.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++.+|||+|||+|.+++.+++. |  .+|+++|++ .+++.|++++...+... ..+...+...++++...|..+... 
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~ln~~~~~~~~v~~~~~d~~~~~~-  181 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSW-KLSHVEEWPDNVDFIHKDISGATE-  181 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHH-TTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccc-ccccccccCCceEEEECChHHccc-
Confidence            46789999999999999999987 5  579999995 59999999987532000 000000012468888877754321 


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ....+.||+|+++.+     ....++..+.++|+|||.+++..+.
T Consensus       182 ~~~~~~fD~V~~~~~-----~~~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          182 DIKSLTFDAVALDML-----NPHVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             ------EEEEEECSS-----STTTTHHHHGGGEEEEEEEEEEESS
T ss_pred             ccCCCCeeEEEECCC-----CHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            122457999998643     3444889999999999998876653

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.21  E-value=6.2e-11  Score=102.52  Aligned_cols=126  Identities=13%  Similarity=0.118  Sum_probs=89.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      +|.+|||+|||+|..++.+|..   ..+|+++|+++ +++.+++|+..++.            .++.+.+.|.....  .
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~------------~nv~v~~~Da~~l~--~  170 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV------------SNAIVTNHAPAELV--P  170 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC------------SSEEEECCCHHHHH--H
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEeCCHHHhh--h
Confidence            5789999999999999999865   35799999955 99999999999873            36777776654221  1


Q ss_pred             ccCCCccEEEEeccccCCc----------------------ChHHHHHHHHHhcCCCcEEEEEEEecCh----hHHHHHH
Q 029065          118 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQML  171 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~----~~~~~~~  171 (199)
                      ...+.||+|+++++.....                      ....++..+.++|+|||.++.++..-..    .+...|+
T Consensus       171 ~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l  250 (456)
T 3m4x_A          171 HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLV  250 (456)
T ss_dssp             HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHH
Confidence            1357899999987642211                      1237788889999999999887764332    3344454


Q ss_pred             HHHHhCCeEEEe
Q 029065          172 QMWKSNFNVKLV  183 (199)
Q Consensus       172 ~~~~~~~~v~~~  183 (199)
                      +..  +|++..+
T Consensus       251 ~~~--~~~l~~~  260 (456)
T 3m4x_A          251 ENY--PVTIEEI  260 (456)
T ss_dssp             HHS--SEEEECC
T ss_pred             HhC--CCEEEec
Confidence            443  3665544

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.20  E-value=3.5e-11  Score=101.49  Aligned_cols=124  Identities=13%  Similarity=0.012  Sum_probs=79.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc-
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-  119 (199)
                      .+.+|||+|||+|.+++.+|+.+.+|+++|++ ++++.|++|+..|+.            .++++...|..+....... 
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~------------~~v~~~~~d~~~~~~~~~~~  280 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI------------DNVQIIRMAAEEFTQAMNGV  280 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTC------------CSEEEECCCSHHHHHHHSSC
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC------------CceEEEECCHHHHHHHHhhc
Confidence            36789999999999999999987889999995 499999999998873            4788887776432110000 


Q ss_pred             ------------CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecC
Q 029065          120 ------------APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK  185 (199)
Q Consensus       120 ------------~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (199)
                                  ...||+|+.+++..  .....+    .+.|+++|.++.....  +....+=+..+..+|+++.+..
T Consensus       281 ~~~~~l~~~~~~~~~fD~Vv~dPPr~--g~~~~~----~~~l~~~g~ivyvsc~--p~t~ard~~~l~~~y~~~~~~~  350 (369)
T 3bt7_A          281 REFNRLQGIDLKSYQCETIFVDPPRS--GLDSET----EKMVQAYPRILYISCN--PETLCKNLETLSQTHKVERLAL  350 (369)
T ss_dssp             CCCTTGGGSCGGGCCEEEEEECCCTT--CCCHHH----HHHHTTSSEEEEEESC--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccccccccccccCCCCEEEECcCcc--ccHHHH----HHHHhCCCEEEEEECC--HHHHHHHHHHHhhCcEEEEEEe
Confidence                        13799999987643  122333    3444566654433322  2222222233334577765543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.20  E-value=8.1e-11  Score=97.22  Aligned_cols=123  Identities=13%  Similarity=0.002  Sum_probs=86.2

Q ss_pred             CcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           44 KRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .+|||||||+|..+..+++.  +.+|+++|++ .+++.|++++....            ..++++...|...... ....
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~------------~~rv~v~~~Da~~~l~-~~~~  157 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR------------APRVKIRVDDARMVAE-SFTP  157 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC------------TTTEEEEESCHHHHHH-TCCT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC------------CCceEEEECcHHHHHh-hccC
Confidence            39999999999999999973  6689999995 49999999874431            3478888877643211 1124


Q ss_pred             CCccEEEEeccccC--Cc--ChHHHHHHHHHhcCCCcEEEEEEEecCh-hHHHHHHHHHHhCCe
Q 029065          121 PPFDYIIGTDVVYA--EH--LLEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQMWKSNFN  179 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~--~~--~~~~~l~~l~~~l~~~g~i~i~~~~~~~-~~~~~~~~~~~~~~~  179 (199)
                      ++||+|++......  ..  ....+++.+.++|+|||.+++....... .....+...+.+-|.
T Consensus       158 ~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~  221 (317)
T 3gjy_A          158 ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFE  221 (317)
T ss_dssp             TCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCS
T ss_pred             CCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCC
Confidence            68999998632211  11  1378999999999999998777654322 234455666666664

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.19  E-value=6.5e-11  Score=102.55  Aligned_cols=127  Identities=17%  Similarity=0.135  Sum_probs=88.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      +|.+|||+|||+|..++.+|..   ..+|+++|+++ +++.+++|+..++.            . +.+.+.|.....  .
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~------------~-v~~~~~Da~~l~--~  165 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA------------P-LAVTQAPPRALA--E  165 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC------------C-CEEECSCHHHHH--H
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------------e-EEEEECCHHHhh--h
Confidence            5789999999999999999965   25799999955 99999999998863            3 666666653221  1


Q ss_pred             ccCCCccEEEEeccccC------CcC----------------hHHHHHHHHHhcCCCcEEEEEEEecCh----hHHHHHH
Q 029065          118 AVAPPFDYIIGTDVVYA------EHL----------------LEPLLQTIFALSGPKTTILLGYEIRST----SVHEQML  171 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~------~~~----------------~~~~l~~l~~~l~~~g~i~i~~~~~~~----~~~~~~~  171 (199)
                      ...+.||+|+++++...      ..+                ...++..+.++|+|||.++.++..-..    .+...|+
T Consensus       166 ~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l  245 (464)
T 3m6w_A          166 AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFL  245 (464)
T ss_dssp             HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHH
Confidence            13578999998766421      111                267888999999999999887764332    2344444


Q ss_pred             HHHHhCCeEEEec
Q 029065          172 QMWKSNFNVKLVP  184 (199)
Q Consensus       172 ~~~~~~~~v~~~~  184 (199)
                      +.. .+|++..+.
T Consensus       246 ~~~-~~~~l~~~~  257 (464)
T 3m6w_A          246 KAH-PEFRLEDAR  257 (464)
T ss_dssp             HHC-TTEEEECCC
T ss_pred             HHC-CCcEEEecc
Confidence            332 146665543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.19  E-value=8e-11  Score=98.22  Aligned_cols=103  Identities=10%  Similarity=-0.010  Sum_probs=78.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC-------CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG-------CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g-------~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ++.+|||+|||+|.+.+.++...       .+|+|+|++ .+++.|+.|+..++.             .+.+...|....
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-------------~~~i~~~D~l~~  196 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------------KMTLLHQDGLAN  196 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------------CCEEEESCTTSC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-------------CceEEECCCCCc
Confidence            45799999999999998888653       569999995 599999999987752             456666665432


Q ss_pred             ccccccCCCccEEEEeccccCCcC-----------------h-HHHHHHHHHhcCCCcEEEEEEEe
Q 029065          114 DHIKAVAPPFDYIIGTDVVYAEHL-----------------L-EPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       114 ~~~~~~~~~fD~Ii~~~~~~~~~~-----------------~-~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                          ...++||+|++++|+.....                 . ..++..+.++|+|||.+++..+.
T Consensus       197 ----~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~  258 (344)
T 2f8l_A          197 ----LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  258 (344)
T ss_dssp             ----CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             ----cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence                12468999999999632111                 1 25899999999999999888864

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.19  E-value=5.3e-11  Score=90.77  Aligned_cols=113  Identities=18%  Similarity=0.106  Sum_probs=73.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C----------CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEE-Eee
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G----------CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-ELD  109 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g----------~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~d  109 (199)
                      ++.+|||||||+|.+++.+++. +          .+|+++|++++.          .            ..++++. ..|
T Consensus        22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~------------~~~~~~~~~~d   79 (196)
T 2nyu_A           22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------P------------LEGATFLCPAD   79 (196)
T ss_dssp             TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------C------------CTTCEEECSCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------c------------CCCCeEEEecc
Confidence            4689999999999999999976 4          679999986621          0            1245666 556


Q ss_pred             eCCCccc-----cccCCCccEEEEeccccCCc----Ch-------HHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHH
Q 029065          110 WGNEDHI-----KAVAPPFDYIIGTDVVYAEH----LL-------EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM  173 (199)
Q Consensus       110 ~~~~~~~-----~~~~~~fD~Ii~~~~~~~~~----~~-------~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~  173 (199)
                      +......     ....++||+|+++..+....    +.       ..++..+.++|+|||.+++.......  ...+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~--~~~~~~~  157 (196)
T 2nyu_A           80 VTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ--SRRLQRR  157 (196)
T ss_dssp             TTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG--GHHHHHH
T ss_pred             CCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc--HHHHHHH
Confidence            5432110     01235899999976543321    11       47899999999999999887654322  2344444


Q ss_pred             HHhCC
Q 029065          174 WKSNF  178 (199)
Q Consensus       174 ~~~~~  178 (199)
                      +...|
T Consensus       158 l~~~f  162 (196)
T 2nyu_A          158 LTEEF  162 (196)
T ss_dssp             HHHHE
T ss_pred             HHHHh
Confidence            44434

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.19  E-value=7.5e-11  Score=94.52  Aligned_cols=100  Identities=8%  Similarity=0.039  Sum_probs=76.3

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ..+|||||||+|.+++.++..  .++|+++|+++ +++.++.|+..++.             ...+...|....    .+
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-------------~~~~~v~D~~~~----~p  195 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-------------PHRTNVADLLED----RL  195 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-------------CEEEEECCTTTS----CC
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-------------CceEEEeeeccc----CC
Confidence            569999999999999999876  45699999965 99999999999874             356666665422    24


Q ss_pred             CCCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .++||++++.-++.+.+.  ....+ .+.+.|+++|. +++.+.
T Consensus       196 ~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~v-vVSfp~  237 (281)
T 3lcv_B          196 DEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNI-VVTFPT  237 (281)
T ss_dssp             CSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEE-EEEEEC
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCE-EEeccc
Confidence            678999999988877332  23344 78888999876 555555

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.18  E-value=3.9e-11  Score=101.91  Aligned_cols=101  Identities=12%  Similarity=0.129  Sum_probs=78.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCc-EEEEEeeeCCCccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGS-IQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~  116 (199)
                      +|.+|||++||+|..++.+++.  |+ +|+++|++ .+++.+++|++.|++.           .+ +++.+.|.....  
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~-----------~~~v~v~~~Da~~~l--  118 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIP-----------EDRYEIHGMEANFFL--  118 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCC-----------GGGEEEECSCHHHHH--
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----------CceEEEEeCCHHHHH--
Confidence            4689999999999999999985  54 59999995 5999999999999742           23 788776654221  


Q ss_pred             c-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      . ...+.||+|++++  |.  ....++....++|+++|.+|++.
T Consensus       119 ~~~~~~~fD~V~lDP--~g--~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          119 RKEWGFGFDYVDLDP--FG--TPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             HSCCSSCEEEEEECC--SS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHhhCCCCcEEEECC--Cc--CHHHHHHHHHHHhCCCCEEEEEe
Confidence            1 1245799999876  32  34578999999999999888876

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.18  E-value=1.2e-10  Score=101.37  Aligned_cols=106  Identities=16%  Similarity=0.154  Sum_probs=80.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|..++.+|..   +.+|+++|+++ +++.+++|+..++.            .++.+.+.|......  
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~------------~nv~~~~~D~~~~~~--  182 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI------------SNVALTHFDGRVFGA--  182 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC------------CSEEEECCCSTTHHH--
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCCHHHhhh--
Confidence            6789999999999999999975   35799999955 99999999998873            367777776643221  


Q ss_pred             ccCCCccEEEEeccccCC------cC----------------hHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAE------HL----------------LEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~------~~----------------~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ...+.||+|+++.+....      .+                ...++..+.++|+|||.+++++..
T Consensus       183 ~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          183 AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence            124689999997664221      11                246788889999999999887764

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.18  E-value=6.6e-11  Score=100.19  Aligned_cols=100  Identities=20%  Similarity=0.114  Sum_probs=77.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C-CeEEEeech-hHHHHHHHHHHHh---------------hhccccCCCCCCCCCcE
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQI-EVLPLLKRNVEWN---------------TSRISQMNPGSDLLGSI  103 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~~-~~l~~a~~~~~~~---------------~~~~~~~~~~~~~~~~i  103 (199)
                      ++.+|||+|||+|..++.+++. + .+|+++|++ ++++.+++|+..|               +.            .++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl------------~~i  114 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE------------KTI  114 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS------------SEE
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC------------Cce
Confidence            6789999999999999999987 4 469999995 5999999999998               42            247


Q ss_pred             EEEEeeeCCCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          104 QAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       104 ~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ++.+.|.....  ....+.||+|+.. +++   ....++....+.++++|.++++.
T Consensus       115 ~v~~~Da~~~~--~~~~~~fD~I~lD-P~~---~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          115 VINHDDANRLM--AERHRYFHFIDLD-PFG---SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             EEEESCHHHHH--HHSTTCEEEEEEC-CSS---CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcCcHHHHH--HhccCCCCEEEeC-CCC---CHHHHHHHHHHhcCCCCEEEEEe
Confidence            77776664321  1113579999965 433   24688999999999999888864

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.18  E-value=1.7e-10  Score=96.71  Aligned_cols=102  Identities=22%  Similarity=0.157  Sum_probs=82.1

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCC--eEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALLGC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ..+|+|||||+|..++.+++...  +++..|.+++++.+++++...+            .+++++...|+...     ..
T Consensus       180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~------------~~rv~~~~gD~~~~-----~~  242 (353)
T 4a6d_A          180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE------------EEQIDFQEGDFFKD-----PL  242 (353)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--------------CCSEEEEESCTTTS-----CC
T ss_pred             CCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc------------cCceeeecCccccC-----CC
Confidence            46999999999999999998744  5788898889999988765433            45899999887532     23


Q ss_pred             CCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +.+|++++..++++.++  ...+++.+.+.|+|||.++|.+..
T Consensus       243 ~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~  285 (353)
T 4a6d_A          243 PEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESL  285 (353)
T ss_dssp             CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence            46899999999987554  468899999999999999998864

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.18  E-value=6.7e-11  Score=95.38  Aligned_cols=122  Identities=7%  Similarity=-0.053  Sum_probs=84.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHH--hhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEW--NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+++|||||||+|..+..+++.+.+|+++|++ .+++.|++++..  ++..          ..++++...|....     
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~----------~~rv~~~~~D~~~~-----  136 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKN----------NKNFTHAKQLLDLD-----  136 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHT----------CTTEEEESSGGGSC-----
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccC----------CCeEEEEechHHHH-----
Confidence            46799999999999998888767679999995 499999876533  1111          23677776555422     


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec--ChhHHHHHHHHHHhCCeEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNVKLVP  184 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~--~~~~~~~~~~~~~~~~~v~~~~  184 (199)
                      . ++||+|++..     .++..+++.+.+.|+|||.+++.....  .........+.+...|....+.
T Consensus       137 ~-~~fD~Ii~d~-----~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~~  198 (262)
T 2cmg_A          137 I-KKYDLIFCLQ-----EPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMPF  198 (262)
T ss_dssp             C-CCEEEEEESS-----CCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEEE
T ss_pred             H-hhCCEEEECC-----CChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEEE
Confidence            1 6899999862     344569999999999999988865432  2223444555555556554433

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.17  E-value=2.2e-11  Score=99.23  Aligned_cols=77  Identities=18%  Similarity=0.181  Sum_probs=61.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|.++..++..+.+|+++|++ .+++.+++++..++.           ..++++...|+....     .
T Consensus        28 ~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~D~~~~~-----~   91 (285)
T 1zq9_A           28 PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPV-----------ASKLQVLVGDVLKTD-----L   91 (285)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTT-----------GGGEEEEESCTTTSC-----C
T ss_pred             CCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcceeccc-----c
Confidence            56799999999999999999999999999995 499999988765432           236888888876432     2


Q ss_pred             CCccEEEEeccccC
Q 029065          121 PPFDYIIGTDVVYA  134 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~  134 (199)
                      ..||+|+++.+++.
T Consensus        92 ~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           92 PFFDTCVANLPYQI  105 (285)
T ss_dssp             CCCSEEEEECCGGG
T ss_pred             hhhcEEEEecCccc
Confidence            37999999877655

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.16  E-value=1.1e-10  Score=95.73  Aligned_cols=76  Identities=21%  Similarity=0.223  Sum_probs=58.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|.++..++..+.+|+++|++ .+++.+++++..++            ..++++...|+....     .
T Consensus        42 ~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~------------~~~v~~~~~D~~~~~-----~  104 (299)
T 2h1r_A           42 SSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEG------------YNNLEVYEGDAIKTV-----F  104 (299)
T ss_dssp             TTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTT------------CCCEEC----CCSSC-----C
T ss_pred             CcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcC------------CCceEEEECchhhCC-----c
Confidence            56799999999999999999998999999995 49999999987664            246788887775432     2


Q ss_pred             CCccEEEEeccccC
Q 029065          121 PPFDYIIGTDVVYA  134 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~  134 (199)
                      +.||+|+++.+++.
T Consensus       105 ~~~D~Vv~n~py~~  118 (299)
T 2h1r_A          105 PKFDVCTANIPYKI  118 (299)
T ss_dssp             CCCSEEEEECCGGG
T ss_pred             ccCCEEEEcCCccc
Confidence            47999999877654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.16  E-value=2.5e-10  Score=98.66  Aligned_cols=129  Identities=17%  Similarity=0.105  Sum_probs=89.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--C-CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--G-CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g-~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|..+..++..  + .+|+++|++. +++.+++|+..++.            .++.+...|....... 
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~------------~~v~~~~~D~~~~~~~-  325 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI------------KIVKPLVKDARKAPEI-  325 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC------------CSEEEECSCTTCCSSS-
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEEEcChhhcchh-
Confidence            5779999999999999999975  3 5799999955 99999999988763            3678877776543210 


Q ss_pred             ccCCCccEEEEeccccCC------cCh----------------HHHHHHHHHhcCCCcEEEEEEEecChh----HHHHHH
Q 029065          118 AVAPPFDYIIGTDVVYAE------HLL----------------EPLLQTIFALSGPKTTILLGYEIRSTS----VHEQML  171 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~------~~~----------------~~~l~~l~~~l~~~g~i~i~~~~~~~~----~~~~~~  171 (199)
                      ...+.||+|+++.+....      .+.                ..++..+.++|+|||.+++++..-...    +...|+
T Consensus       326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l  405 (450)
T 2yxl_A          326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFL  405 (450)
T ss_dssp             SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHH
Confidence            123679999986554221      111                578999999999999998877654332    233343


Q ss_pred             HHHHhCCeEEEec
Q 029065          172 QMWKSNFNVKLVP  184 (199)
Q Consensus       172 ~~~~~~~~v~~~~  184 (199)
                      +.. .+|+...+.
T Consensus       406 ~~~-~~~~~~~~~  417 (450)
T 2yxl_A          406 NVH-PEFKLVPLK  417 (450)
T ss_dssp             HHC-SSCEECCCC
T ss_pred             HhC-CCCEEeecc
Confidence            332 246665443

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.15  E-value=2.1e-10  Score=98.47  Aligned_cols=107  Identities=16%  Similarity=0.095  Sum_probs=80.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|..+..++..+  .+|+++|+++ +++.+++|+..++.             .+.+...|....... .
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-------------~~~~~~~D~~~~~~~-~  311 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-------------KATVKQGDGRYPSQW-C  311 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-------------CCEEEECCTTCTHHH-H
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-------------CeEEEeCchhhchhh-c
Confidence            57899999999999999999875  5799999955 99999999988763             356777666543210 2


Q ss_pred             cCCCccEEEEeccccCC------cC----------------hHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYAE------HL----------------LEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~------~~----------------~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..+.||+|+++.+....      .+                ...++..+.++|+|||.+++++..-
T Consensus       312 ~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            23689999987664321      11                1478888999999999998887543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.14  E-value=2.7e-10  Score=90.34  Aligned_cols=101  Identities=8%  Similarity=-0.069  Sum_probs=74.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ....+|||||||+|.+++.++ .+.+|+++|++. +++.++.++..++.             ...+...|.....    .
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~-------------~~~~~v~D~~~~~----~  165 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDW-------------DFTFALQDVLCAP----P  165 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC-------------EEEEEECCTTTSC----C
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC-------------CceEEEeecccCC----C
Confidence            456799999999999999888 566799999955 99999999888863             5677776765332    3


Q ss_pred             CCCccEEEEeccccCCc-ChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          120 APPFDYIIGTDVVYAEH-LLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~-~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      .++||+|++..++.+-+ ........+.+.|++++. +++.+
T Consensus       166 ~~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~v-vVsfP  206 (253)
T 3frh_A          166 AEAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRM-AVSFP  206 (253)
T ss_dssp             CCBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEE-EEEEE
T ss_pred             CCCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCE-EEEcC
Confidence            56899999997776622 222233366668888865 55665

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.14  E-value=1.4e-10  Score=96.96  Aligned_cols=97  Identities=13%  Similarity=0.092  Sum_probs=77.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+.+|||||||+|..+..+++.  +.+|+++|++.+++.+++                  ..++++...|+...  .   
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~~--~---  244 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG------------------SNNLTYVGGDMFTS--I---  244 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------------BTTEEEEECCTTTC--C---
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc------------------CCCcEEEeccccCC--C---
Confidence            4579999999999999999976  567999999557665543                  12478888777531  1   


Q ss_pred             CCCccEEEEeccccCCcChH--HHHHHHHHhcCC---CcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAEHLLE--PLLQTIFALSGP---KTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~--~~l~~l~~~l~~---~g~i~i~~~~~  162 (199)
                       +.||+|++..++++..+..  .+++.+.++|+|   ||.+++.+...
T Consensus       245 -p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~  291 (352)
T 1fp2_A          245 -PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI  291 (352)
T ss_dssp             -CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             -CCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence             2499999999999877666  999999999999   99999987653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.13  E-value=2e-11  Score=99.16  Aligned_cols=120  Identities=12%  Similarity=-0.017  Sum_probs=74.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEE--EeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV--ELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~d~~~~~~~~~~  119 (199)
                      ++.+|||||||+|.++..++.. .+|+++|+++++..++++    ..      +......++.+.  +.|....     .
T Consensus        82 ~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~m~~~a~~~----~~------~~~~~~~~v~~~~~~~D~~~l-----~  145 (276)
T 2wa2_A           82 LKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYTLGTSGHEK----PR------LVETFGWNLITFKSKVDVTKM-----E  145 (276)
T ss_dssp             CCEEEEEESCTTCHHHHHHHTS-TTEEEEEEECCCCTTSCC----CC------CCCCTTGGGEEEECSCCGGGC-----C
T ss_pred             CCCEEEEeccCCCHHHHHHHHc-CCEEEEECchhhhhhhhc----hh------hhhhcCCCeEEEeccCcHhhC-----C
Confidence            5789999999999999999988 789999996653222111    00      000001156666  6565432     2


Q ss_pred             CCCccEEEEeccccCCcCh----H---HHHHHHHHhcCCCc--EEEEEEEecChhHHHHHHHHHHhCC
Q 029065          120 APPFDYIIGTDVVYAEHLL----E---PLLQTIFALSGPKT--TILLGYEIRSTSVHEQMLQMWKSNF  178 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~----~---~~l~~l~~~l~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~  178 (199)
                      .++||+|+++.. +....+    .   .++..+.++|+|||  .+++............+++.+...|
T Consensus       146 ~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~~~~~~l~~l~~~f  212 (276)
T 2wa2_A          146 PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSCDVLEALMKMQARF  212 (276)
T ss_dssp             CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSHHHHHHHHHHHHHH
T ss_pred             CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCchhHHHHHHHHHHHc
Confidence            568999999755 332221    1   37888899999999  8877544322221224455555444

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.12  E-value=3.5e-11  Score=97.24  Aligned_cols=120  Identities=13%  Similarity=0.009  Sum_probs=73.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEE--EeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV--ELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~d~~~~~~~~~~  119 (199)
                      ++.+|||||||+|.++..++.. .+|+++|+++++..++++    ..      +......++.+.  +.|....     .
T Consensus        74 ~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~m~~~a~~~----~~------~~~~~~~~v~~~~~~~D~~~l-----~  137 (265)
T 2oxt_A           74 LTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYTLGVGGHEV----PR------ITESYGWNIVKFKSRVDIHTL-----P  137 (265)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTS-TTEEEEEEECCCCSSCCC----CC------CCCBTTGGGEEEECSCCTTTS-----C
T ss_pred             CCCEEEEeCcCCCHHHHHHHHc-CcEEEEECchhhhhhhhh----hh------hhhccCCCeEEEecccCHhHC-----C
Confidence            5789999999999999999988 789999986642222111    00      000001146666  6565432     2


Q ss_pred             CCCccEEEEeccccCCcCh----H---HHHHHHHHhcCCCc--EEEEEEEecChhHHHHHHHHHHhCC
Q 029065          120 APPFDYIIGTDVVYAEHLL----E---PLLQTIFALSGPKT--TILLGYEIRSTSVHEQMLQMWKSNF  178 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~----~---~~l~~l~~~l~~~g--~i~i~~~~~~~~~~~~~~~~~~~~~  178 (199)
                      .++||+|+++.. +....+    .   .++..+.++|+|||  .+++............++..+...|
T Consensus       138 ~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~~~~l~~l~~~f  204 (265)
T 2oxt_A          138 VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEVMERLSVMQRKW  204 (265)
T ss_dssp             CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhHHHHHHHHHHHc
Confidence            468999999755 332221    1   37888899999999  8877554322211224455554444

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.09  E-value=1.5e-10  Score=98.74  Aligned_cols=79  Identities=14%  Similarity=0.136  Sum_probs=63.6

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHh--hhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWN--TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      |.+|||+|||+|..++.+++.+++|+++|+++ +++.|+.|+..+  +            ..++++.+.|....... ..
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~g------------l~~i~~i~~Da~~~L~~-~~  160 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNE------------GKDVNILTGDFKEYLPL-IK  160 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCT------------TCEEEEEESCGGGSHHH-HH
T ss_pred             CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccC------------CCcEEEEECcHHHhhhh-cc
Confidence            88999999999999999999999999999955 999999999877  5            24788998887643111 11


Q ss_pred             CCCccEEEEeccccC
Q 029065          120 APPFDYIIGTDVVYA  134 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~  134 (199)
                      .++||+|+++++...
T Consensus       161 ~~~fDvV~lDPPrr~  175 (410)
T 3ll7_A          161 TFHPDYIYVDPARRS  175 (410)
T ss_dssp             HHCCSEEEECCEEC-
T ss_pred             CCCceEEEECCCCcC
Confidence            358999999887754

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.08  E-value=3.5e-10  Score=90.96  Aligned_cols=81  Identities=19%  Similarity=0.062  Sum_probs=61.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-h-------hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-I-------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~-------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ++.+|||+|||+|..++.+|..|++|+++|+ +       ++++.|++|+..++..           .++++.+.|....
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~-----------~ri~~~~~d~~~~  151 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTA-----------ARINLHFGNAAEQ  151 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHH-----------TTEEEEESCHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCc-----------cCeEEEECCHHHH
Confidence            4579999999999999999999999999998 7       7888888888877642           3588888777532


Q ss_pred             ccccccC--CCccEEEEeccccC
Q 029065          114 DHIKAVA--PPFDYIIGTDVVYA  134 (199)
Q Consensus       114 ~~~~~~~--~~fD~Ii~~~~~~~  134 (199)
                      .. ...+  ++||+|++++++.+
T Consensus       152 l~-~~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          152 MP-ALVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HH-HHHHHHCCCSEEEECCCC--
T ss_pred             HH-hhhccCCCccEEEECCCCCC
Confidence            11 0112  68999999876644

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.07  E-value=2e-10  Score=96.71  Aligned_cols=96  Identities=18%  Similarity=0.079  Sum_probs=76.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+.+|||||||+|..+..++..+  .+++++|++.+++.+++                  ..++++...|+...  .   
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~~--~---  265 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP------------------LSGIEHVGGDMFAS--V---  265 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------------CTTEEEEECCTTTC--C---
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh------------------cCCCEEEeCCcccC--C---
Confidence            45799999999999999999875  45888898557665542                  12578888777541  1   


Q ss_pred             CCCccEEEEeccccCCcChH--HHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~--~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                       +.||+|+++.++++..+..  .+++.+.++|+|||.++|.+..
T Consensus       266 -~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  308 (372)
T 1fp1_D          266 -PQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI  308 (372)
T ss_dssp             -CCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -CCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence             2399999999999877766  9999999999999999988654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.06  E-value=5.1e-10  Score=95.18  Aligned_cols=105  Identities=12%  Similarity=0.102  Sum_probs=78.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC----------------------------------------eEEEeechh-HHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC----------------------------------------NVITTDQIE-VLPLLK   80 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~----------------------------------------~v~~~D~~~-~l~~a~   80 (199)
                      .+..|||.+||+|.+.+.+|..+.                                        +|+++|++. +++.|+
T Consensus       201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar  280 (393)
T 3k0b_A          201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK  280 (393)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence            467999999999999999987643                                        499999954 999999


Q ss_pred             HHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCC----cChHHHHHHHHHhcCC--CcE
Q 029065           81 RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGP--KTT  154 (199)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~~--~g~  154 (199)
                      .|+..++.           ...+++.+.|+.+..    ....||+|++++|+...    .....+...+.+.|++  |+.
T Consensus       281 ~Na~~~gl-----------~~~I~~~~~D~~~~~----~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~  345 (393)
T 3k0b_A          281 QNAVEAGL-----------GDLITFRQLQVADFQ----TEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWS  345 (393)
T ss_dssp             HHHHHTTC-----------TTCSEEEECCGGGCC----CCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred             HHHHHcCC-----------CCceEEEECChHhCC----CCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCE
Confidence            99998874           336888888876432    13589999999886431    3345556666666654  888


Q ss_pred             EEEEEEe
Q 029065          155 ILLGYEI  161 (199)
Q Consensus       155 i~i~~~~  161 (199)
                      +++....
T Consensus       346 ~~iit~~  352 (393)
T 3k0b_A          346 VYVLTSY  352 (393)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            8877654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.06  E-value=5e-10  Score=95.00  Aligned_cols=105  Identities=15%  Similarity=0.099  Sum_probs=79.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC----------------------------------------CeEEEeech-hHHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG----------------------------------------CNVITTDQI-EVLPLLK   80 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g----------------------------------------~~v~~~D~~-~~l~~a~   80 (199)
                      .+..|||.|||+|.+.+.+|..+                                        .+|+|+|++ .+++.|+
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar  274 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR  274 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence            46799999999999999998764                                        359999995 4999999


Q ss_pred             HHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccC----CcChHHHHHHHHHhcCC--CcE
Q 029065           81 RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGP--KTT  154 (199)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l~~--~g~  154 (199)
                      .|+..++.           ...+++.+.|+.+..    ....||+|++++++..    ......+...+.+.|++  ++.
T Consensus       275 ~Na~~~gl-----------~~~i~~~~~D~~~l~----~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~  339 (385)
T 3ldu_A          275 ENAEIAGV-----------DEYIEFNVGDATQFK----SEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS  339 (385)
T ss_dssp             HHHHHHTC-----------GGGEEEEECCGGGCC----CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred             HHHHHcCC-----------CCceEEEECChhhcC----cCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence            99998874           236888888876432    1358999999998643    23455666666666665  788


Q ss_pred             EEEEEEe
Q 029065          155 ILLGYEI  161 (199)
Q Consensus       155 i~i~~~~  161 (199)
                      +++....
T Consensus       340 ~~iit~~  346 (385)
T 3ldu_A          340 YYLITSY  346 (385)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            7776653

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.04  E-value=1e-09  Score=93.07  Aligned_cols=105  Identities=10%  Similarity=0.074  Sum_probs=80.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC----------------------------------------eEEEeechh-HHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC----------------------------------------NVITTDQIE-VLPLLK   80 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~----------------------------------------~v~~~D~~~-~l~~a~   80 (199)
                      .+..|||.+||+|.+.+.+|..+.                                        +|+++|++. +++.|+
T Consensus       194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar  273 (384)
T 3ldg_A          194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR  273 (384)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence            467999999999999999987643                                        499999954 999999


Q ss_pred             HHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccC----CcChHHHHHHHHHhcCC--CcE
Q 029065           81 RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGP--KTT  154 (199)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l~~--~g~  154 (199)
                      .|+..++.           ...+++.+.|+.+..    ....||+|++++|+..    ......+...+-+.|++  |+.
T Consensus       274 ~Na~~~gl-----------~~~I~~~~~D~~~l~----~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~  338 (384)
T 3ldg_A          274 KNAREVGL-----------EDVVKLKQMRLQDFK----TNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWS  338 (384)
T ss_dssp             HHHHHTTC-----------TTTEEEEECCGGGCC----CCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSE
T ss_pred             HHHHHcCC-----------CCceEEEECChHHCC----ccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcE
Confidence            99998874           346888888876432    1348999999988653    13456677777777765  888


Q ss_pred             EEEEEEe
Q 029065          155 ILLGYEI  161 (199)
Q Consensus       155 i~i~~~~  161 (199)
                      +++....
T Consensus       339 ~~iit~~  345 (384)
T 3ldg_A          339 QFILTND  345 (384)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            8887764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.03  E-value=5.8e-10  Score=93.86  Aligned_cols=96  Identities=15%  Similarity=0.112  Sum_probs=75.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+.+|||||||+|..+..+++.  +.+++++|++.+++.++.                  ..++++...|+.+.  .  +
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~~--~--p  260 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA------------------FSGVEHLGGDMFDG--V--P  260 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------------CTTEEEEECCTTTC--C--C
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhh------------------cCCCEEEecCCCCC--C--C
Confidence            4579999999999999999875  457999999667655532                  13688888887631  1  1


Q ss_pred             CCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      . . |+|++..++++..  ....+++.+.++|+|||.++|.+..
T Consensus       261 ~-~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          261 K-G-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             C-C-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             C-C-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            2 3 9999999998654  4568999999999999999998764

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.02  E-value=1.6e-09  Score=93.46  Aligned_cols=106  Identities=13%  Similarity=0.008  Sum_probs=78.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---------------CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEE
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA  105 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---------------g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~  105 (199)
                      .+.+|||.|||+|.+.+.+++.               +.+++|+|++ .+++.|+.|+..++..          ...+.+
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~----------~~~~~i  240 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----------TDRSPI  240 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----------SSCCSE
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC----------cCCCCE
Confidence            4679999999999988887753               3579999995 5999999999887631          013456


Q ss_pred             EEeeeCCCccccccCCCccEEEEeccccCCcC-----------------hHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          106 VELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----------------LEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       106 ~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~-----------------~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .+.|.....    ...+||+|++++|+.....                 ...+++.+.++|+|||.+.+..+.
T Consensus       241 ~~gD~l~~~----~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          241 VCEDSLEKE----PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             EECCTTTSC----CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             eeCCCCCCc----ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            666654322    1248999999999865321                 137899999999999999888774

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.02  E-value=8.2e-10  Score=82.98  Aligned_cols=110  Identities=12%  Similarity=0.071  Sum_probs=78.8

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      -+|.+|||||||.              +.+|+++ |++.|+++...                ++++...|..+.......
T Consensus        11 ~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~----------------~~~~~~~d~~~~~~~~~~   60 (176)
T 2ld4_A           11 SAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN----------------EGRVSVENIKQLLQSAHK   60 (176)
T ss_dssp             CTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT----------------TSEEEEEEGGGGGGGCCC
T ss_pred             CCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc----------------CcEEEEechhcCccccCC
Confidence            3578999999996              2389855 99998876421                357777777643221114


Q ss_pred             CCCccEEEEeccccCC-cChHHHHHHHHHhcCCCcEEEEEEEecCh-------hHHHHHHHHHH-hCCeEE
Q 029065          120 APPFDYIIGTDVVYAE-HLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWK-SNFNVK  181 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~-~~~~~~l~~l~~~l~~~g~i~i~~~~~~~-------~~~~~~~~~~~-~~~~v~  181 (199)
                      .+.||+|+++.++++. .+...+++.+.++|+|||.+++..+....       ...+.+.+.+. .|| +.
T Consensus        61 ~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~  130 (176)
T 2ld4_A           61 ESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE  130 (176)
T ss_dssp             SSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred             CCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence            6789999999999887 88999999999999999999997663221       01345555553 578 54

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.01  E-value=5.8e-10  Score=93.30  Aligned_cols=96  Identities=14%  Similarity=0.024  Sum_probs=75.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+.+|||||||+|..+..+++..  .+++++|++.+++.+++                  ..++++...|+.. .     
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~-~-----  248 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------------------NENLNFVGGDMFK-S-----  248 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------------------CSSEEEEECCTTT-C-----
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------------------CCCcEEEeCccCC-C-----
Confidence            35799999999999999999874  46999998666654432                  1247888877753 1     


Q ss_pred             CCCccEEEEeccccCCcChH--HHHHHHHHhcCC---CcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLLE--PLLQTIFALSGP---KTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~--~~l~~l~~~l~~---~g~i~i~~~~  161 (199)
                      .+.||+|+++.++++..+..  .+++.+.++|+|   ||.++|.+..
T Consensus       249 ~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          249 IPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             CCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred             CCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence            12599999999999877755  999999999999   9999988754

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.01  E-value=1.9e-09  Score=87.24  Aligned_cols=108  Identities=13%  Similarity=0.074  Sum_probs=77.2

Q ss_pred             CcEEEeCCCc---ChHHHHHHh--hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-
Q 029065           44 KRVIELGAGC---GVAGFGMAL--LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  116 (199)
Q Consensus        44 ~~VLdlGcG~---G~~sl~la~--~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-  116 (199)
                      ..|||||||+   |.....+.+  .+++|+++|.+ .|+..++..+....            ..++.+.+.|+.+.... 
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~------------~~~~~~v~aD~~~~~~~l  147 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP------------EGRTAYVEADMLDPASIL  147 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS------------SSEEEEEECCTTCHHHHH
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC------------CCcEEEEEecccChhhhh
Confidence            5899999997   444443333  26789999995 59999988764331            23688999888754210 


Q ss_pred             --cccCCCcc-----EEEEeccccCCcC---hHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          117 --KAVAPPFD-----YIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       117 --~~~~~~fD-----~Ii~~~~~~~~~~---~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                        ......||     .|+++.++++..+   +..+++.+.+.|+|||.++++.....
T Consensus       148 ~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          148 DAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             TCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             cccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence              00012344     5788899998666   56899999999999999999987653

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.01  E-value=3.1e-10  Score=93.45  Aligned_cols=115  Identities=11%  Similarity=-0.069  Sum_probs=70.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeec----hh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe-eeCCCcc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ----IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDH  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~----~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~  115 (199)
                      ++.+|||||||+|.++..++.. .+|+++|+    +. .++.+.    ..        +  .....+.+... |....  
T Consensus        82 ~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~----~~--------~--~~~~~v~~~~~~D~~~l--  144 (305)
T 2p41_A           82 PEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP----MS--------T--YGWNLVRLQSGVDVFFI--  144 (305)
T ss_dssp             CCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC----CC--------S--TTGGGEEEECSCCTTTS--
T ss_pred             CCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH----hh--------h--cCCCCeEEEeccccccC--
Confidence            4789999999999999999988 68999998    22 221100    00        0  00135677665 54322  


Q ss_pred             ccccCCCccEEEEecccc---CCcChH---HHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh
Q 029065          116 IKAVAPPFDYIIGTDVVY---AEHLLE---PLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS  176 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~---~~~~~~---~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~  176 (199)
                         ...+||+|+++..+.   +..+..   .++..+.++|+|||.+++............++..+..
T Consensus       145 ---~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~~~~~~l~~l~~  208 (305)
T 2p41_A          145 ---PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMSSVIEKMEALQR  208 (305)
T ss_dssp             ---CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSHHHHHHHHHHHH
T ss_pred             ---CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHH
Confidence               245899999965432   111111   4678888999999987774433222223445555543

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.00  E-value=1.1e-09  Score=93.07  Aligned_cols=96  Identities=16%  Similarity=0.122  Sum_probs=72.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||+|||+|.+++.++..   +.+|+|+|+++ +++.|                     .++++.+.|+....   
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------------~~~~~~~~D~~~~~---   94 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------------PWAEGILADFLLWE---   94 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------------TTEEEEESCGGGCC---
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------------CCCcEEeCChhhcC---
Confidence            4569999999999999999864   46799999954 66554                     15677777765332   


Q ss_pred             ccCCCccEEEEeccccCCcC-----------------------------hHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          118 AVAPPFDYIIGTDVVYAEHL-----------------------------LEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~-----------------------------~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                       ..++||+|++++|+.....                             ...+++.+.++|+|+|.+.+..+..
T Consensus        95 -~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A           95 -PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             -CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             -ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence             2468999999998865322                             1266888899999999998888763

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.99  E-value=9.3e-10  Score=92.53  Aligned_cols=97  Identities=14%  Similarity=0.119  Sum_probs=76.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+.+|||||||+|..+..+++.  +.+++++|++.+++.++.                  ..++++...|+.. . .  +
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~D~~~-~-~--p  258 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ------------------FPGVTHVGGDMFK-E-V--P  258 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------------CTTEEEEECCTTT-C-C--C
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhh------------------cCCeEEEeCCcCC-C-C--C
Confidence            4579999999999999999875  457999999667655532                  1378998888764 1 1  1


Q ss_pred             CCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      . . |+|++..++++.  .....+++.+.+.|+|||.++|.+...
T Consensus       259 ~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~  301 (364)
T 3p9c_A          259 S-G-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCIL  301 (364)
T ss_dssp             C-C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCB
T ss_pred             C-C-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            2 3 999999999865  456789999999999999999987653

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.99  E-value=1.5e-09  Score=88.84  Aligned_cols=77  Identities=18%  Similarity=0.128  Sum_probs=62.0

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .++.+|||||||+|.++..++..+.+|+++|++ .+++.+++++..              ..++++.+.|+....   ..
T Consensus        49 ~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~--------------~~~v~vi~gD~l~~~---~~  111 (295)
T 3gru_A           49 TKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL--------------YNNIEIIWGDALKVD---LN  111 (295)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH--------------CSSEEEEESCTTTSC---GG
T ss_pred             CCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc--------------CCCeEEEECchhhCC---cc
Confidence            357799999999999999999999999999995 499999998762              347899988876543   22


Q ss_pred             CCCccEEEEeccccC
Q 029065          120 APPFDYIIGTDVVYA  134 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~  134 (199)
                      ...||.|+++.+++.
T Consensus       112 ~~~fD~Iv~NlPy~i  126 (295)
T 3gru_A          112 KLDFNKVVANLPYQI  126 (295)
T ss_dssp             GSCCSEEEEECCGGG
T ss_pred             cCCccEEEEeCcccc
Confidence            347999999977654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.98  E-value=4e-10  Score=95.61  Aligned_cols=102  Identities=16%  Similarity=0.203  Sum_probs=73.6

Q ss_pred             CCCCCCCcEEEeCCC------cChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEE
Q 029065           38 PSKLKGKRVIELGAG------CGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE  107 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG------~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~  107 (199)
                      +...++.+|||||||      +|-.++.+++.   +++|+++|+++ +.        ..             ..++++.+
T Consensus       212 ~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~-------------~~rI~fv~  270 (419)
T 3sso_A          212 DYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD-------------ELRIRTIQ  270 (419)
T ss_dssp             GGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC-------------BTTEEEEE
T ss_pred             hhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc-------------CCCcEEEE
Confidence            334467899999999      66667766653   67899999965 51        11             34789998


Q ss_pred             eeeCCCccc---cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          108 LDWGNEDHI---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       108 ~d~~~~~~~---~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .|..+....   ....++||+|+++.. ++..+...+++.+.++|+|||.+++.+..
T Consensus       271 GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          271 GDQNDAEFLDRIARRYGPFDIVIDDGS-HINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             CCTTCHHHHHHHHHHHCCEEEEEECSC-CCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             ecccccchhhhhhcccCCccEEEECCc-ccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            887643211   011478999998654 44567888999999999999999998654

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.97  E-value=9.6e-10  Score=88.28  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=60.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc-
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-  119 (199)
                      ++.+|||||||+|.++..++..+++|+++|++ .+++.+++++...              .++++.+.|....+..... 
T Consensus        29 ~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~--------------~~v~~i~~D~~~~~~~~~~~   94 (255)
T 3tqs_A           29 KTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQ--------------KNITIYQNDALQFDFSSVKT   94 (255)
T ss_dssp             TTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTC--------------TTEEEEESCTTTCCGGGSCC
T ss_pred             CcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhC--------------CCcEEEEcchHhCCHHHhcc
Confidence            56799999999999999999999999999995 4999998886431              3688888888665422211 


Q ss_pred             CCCccEEEEeccccC
Q 029065          120 APPFDYIIGTDVVYA  134 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~  134 (199)
                      .++|| |++|.+++-
T Consensus        95 ~~~~~-vv~NlPY~i  108 (255)
T 3tqs_A           95 DKPLR-VVGNLPYNI  108 (255)
T ss_dssp             SSCEE-EEEECCHHH
T ss_pred             CCCeE-EEecCCccc
Confidence            35688 888877643

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.94  E-value=1.1e-08  Score=84.21  Aligned_cols=79  Identities=16%  Similarity=0.096  Sum_probs=60.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      +|.+|||+|||+|..++.++..   ..+|+++|++ .+++.+++|+..++.            .++++...|+.......
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~------------~~v~~~~~D~~~~~~~~  169 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------------SCCELAEEDFLAVSPSD  169 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCGGGSCTTC
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCChHhcCccc
Confidence            5789999999999999999864   3579999995 499999999998873            46888888775432111


Q ss_pred             ccCCCccEEEEeccc
Q 029065          118 AVAPPFDYIIGTDVV  132 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~  132 (199)
                      .....||.|++..+.
T Consensus       170 ~~~~~fD~Vl~D~Pc  184 (309)
T 2b9e_A          170 PRYHEVHYILLDPSC  184 (309)
T ss_dssp             GGGTTEEEEEECCCC
T ss_pred             cccCCCCEEEEcCCc
Confidence            111479999987554

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.94  E-value=2.5e-09  Score=85.12  Aligned_cols=75  Identities=12%  Similarity=0.062  Sum_probs=55.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|.++..++..+.+|+++|++. +++.+++++..              ..++++.+.|+......  ..
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~--------------~~~v~~~~~D~~~~~~~--~~   93 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--------------HDNFQVLNKDILQFKFP--KN   93 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--------------CCSEEEECCCGGGCCCC--SS
T ss_pred             CCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc--------------CCCeEEEEChHHhCCcc--cC
Confidence            577999999999999999999999999999954 99998887642              23688888777543211  12


Q ss_pred             CCccEEEEecccc
Q 029065          121 PPFDYIIGTDVVY  133 (199)
Q Consensus       121 ~~fD~Ii~~~~~~  133 (199)
                      ..| .|+++.+++
T Consensus        94 ~~~-~vv~nlPy~  105 (244)
T 1qam_A           94 QSY-KIFGNIPYN  105 (244)
T ss_dssp             CCC-EEEEECCGG
T ss_pred             CCe-EEEEeCCcc
Confidence            345 577776654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.89  E-value=2.2e-11  Score=96.90  Aligned_cols=76  Identities=14%  Similarity=0.145  Sum_probs=56.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||+|||+|.++..++..+.+|+++|+++ +++.+++++..              ..++++.+.|+.+...  ...
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~--------------~~~v~~~~~D~~~~~~--~~~   92 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL--------------NTRVTLIHQDILQFQF--PNK   92 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT--------------CSEEEECCSCCTTTTC--CCS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc--------------CCceEEEECChhhcCc--ccC
Confidence            567999999999999999999998999999955 87777766531              2367888877764431  112


Q ss_pred             CCccEEEEeccccC
Q 029065          121 PPFDYIIGTDVVYA  134 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~  134 (199)
                      ++| .|+++.+++.
T Consensus        93 ~~f-~vv~n~Py~~  105 (245)
T 1yub_A           93 QRY-KIVGNIPYHL  105 (245)
T ss_dssp             SEE-EEEEECCSSS
T ss_pred             CCc-EEEEeCCccc
Confidence            568 7888877654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.89  E-value=3.3e-09  Score=85.88  Aligned_cols=76  Identities=17%  Similarity=0.135  Sum_probs=59.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++ +|||||||+|.++..++..+++|+++|+++ +++.+++++..               .++++.+.|....+..  ..
T Consensus        47 ~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~---------------~~v~vi~~D~l~~~~~--~~  108 (271)
T 3fut_A           47 TG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG---------------LPVRLVFQDALLYPWE--EV  108 (271)
T ss_dssp             CS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT---------------SSEEEEESCGGGSCGG--GS
T ss_pred             CC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC---------------CCEEEEECChhhCChh--hc
Confidence            46 999999999999999999999999999954 99999887642               2688888887644321  11


Q ss_pred             CCccEEEEeccccCC
Q 029065          121 PPFDYIIGTDVVYAE  135 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~  135 (199)
                      ..+|.|++|.+++-.
T Consensus       109 ~~~~~iv~NlPy~is  123 (271)
T 3fut_A          109 PQGSLLVANLPYHIA  123 (271)
T ss_dssp             CTTEEEEEEECSSCC
T ss_pred             cCccEEEecCccccc
Confidence            368999999876553

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.84  E-value=6.1e-09  Score=83.71  Aligned_cols=85  Identities=18%  Similarity=0.221  Sum_probs=57.4

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCC-CCCcEEEEEeeeCCCccccccCC
Q 029065           44 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSD-LLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      .+|||+|||+|..++.+|..|++|+++|.++ +...++.++.......    ..++ ...++++.+.|..+.  +.....
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~----~~~~~l~~~i~~~~~D~~~~--L~~~~~  163 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADA----EIGGWLQERLQLIHASSLTA--LTDITP  163 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCT----TTHHHHHHHEEEEESCHHHH--STTCSS
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhH----hhhhhhhcCEEEEECCHHHH--HHhCcc
Confidence            7999999999999999999999999999954 7777776664322100    0000 013678888776432  111224


Q ss_pred             CccEEEEeccccC
Q 029065          122 PFDYIIGTDVVYA  134 (199)
Q Consensus       122 ~fD~Ii~~~~~~~  134 (199)
                      .||+|++++++.+
T Consensus       164 ~fDvV~lDP~y~~  176 (258)
T 2oyr_A          164 RPQVVYLDPMFPH  176 (258)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             cCCEEEEcCCCCC
Confidence            7999999876644

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.84  E-value=1.1e-08  Score=90.24  Aligned_cols=130  Identities=8%  Similarity=-0.120  Sum_probs=84.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--------------------CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCC
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--------------------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLL  100 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--------------------g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~  100 (199)
                      .+.+|||.+||+|.+.+.++..                    ...++|+|++ .+++.|+.|+..++....   +    .
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~---~----~  241 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN---L----D  241 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB---G----G
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc---c----c
Confidence            4679999999999887777643                    1369999995 499999999887763200   0    0


Q ss_pred             CcEEEEEeeeCCCccccccCCCccEEEEeccccCCcC--------------hHHHHHHHHHhcCCCcEEEEEEEec---C
Q 029065          101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------LEPLLQTIFALSGPKTTILLGYEIR---S  163 (199)
Q Consensus       101 ~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~--------------~~~~l~~l~~~l~~~g~i~i~~~~~---~  163 (199)
                      ..+.+.+.|.....  ....++||+|++++|+.....              ...++..+.++|+|+|.+.+..+..   .
T Consensus       242 ~~~~I~~gDtL~~~--~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L~~  319 (541)
T 2ar0_A          242 HGGAIRLGNTLGSD--GENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE  319 (541)
T ss_dssp             GTBSEEESCTTSHH--HHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHC
T ss_pred             ccCCeEeCCCcccc--cccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcceec
Confidence            01455555533211  112468999999999755322              2368899999999999988887753   1


Q ss_pred             hhHHHHHHHHHHhCCeE
Q 029065          164 TSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       164 ~~~~~~~~~~~~~~~~v  180 (199)
                      ......+.+.+.+.+.+
T Consensus       320 ~~~~~~iR~~L~~~~~l  336 (541)
T 2ar0_A          320 GGKGTDIRRDLMDKCHL  336 (541)
T ss_dssp             CTHHHHHHHHHHHHEEE
T ss_pred             CcHHHHHHHHHhhcCCE
Confidence            11234455555443333

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.80  E-value=6.2e-08  Score=85.49  Aligned_cols=131  Identities=9%  Similarity=-0.027  Sum_probs=89.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-----CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-----GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-----g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..+.+|||.+||+|.+.+.+++.     ...++|+|++ .++..|+.|+..++..          ...+.+.+.|....+
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~----------~~~~~I~~gDtL~~d  289 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP----------IENQFLHNADTLDED  289 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC----------GGGEEEEESCTTTSC
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC----------cCccceEecceeccc
Confidence            35679999999999877776654     4569999995 4999999999888642          135667776654331


Q ss_pred             cccccCCCccEEEEeccccCCc--------C---------------hHHHHHHHHHhcC-CCcEEEEEEEecC---hhHH
Q 029065          115 HIKAVAPPFDYIIGTDVVYAEH--------L---------------LEPLLQTIFALSG-PKTTILLGYEIRS---TSVH  167 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~~~--------~---------------~~~~l~~l~~~l~-~~g~i~i~~~~~~---~~~~  167 (199)
                      .......+||+|++|+|+....        +               --.++..+.++|+ ++|++.+..+..-   ....
T Consensus       290 ~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~  369 (542)
T 3lkd_A          290 WPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAE  369 (542)
T ss_dssp             SCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHH
T ss_pred             ccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchh
Confidence            1112346899999999984311        0               0137889999999 9999888877531   1224


Q ss_pred             HHHHHHHHhCCeEE
Q 029065          168 EQMLQMWKSNFNVK  181 (199)
Q Consensus       168 ~~~~~~~~~~~~v~  181 (199)
                      ..+.+.+...+.+.
T Consensus       370 ~~iRk~Lle~~~l~  383 (542)
T 3lkd_A          370 GTIRKALLEEGAID  383 (542)
T ss_dssp             HHHHHHHHHTTCEE
T ss_pred             HHHHHHHHhCCcee
Confidence            55666665555543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.79  E-value=7e-09  Score=92.70  Aligned_cols=103  Identities=12%  Similarity=-0.010  Sum_probs=75.3

Q ss_pred             CCCCCCCCcEEEeCCCcChHHHHHHh---hCC---eEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeee
Q 029065           37 CPSKLKGKRVIELGAGCGVAGFGMAL---LGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW  110 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~~sl~la~---~g~---~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~  110 (199)
                      +....+++.|||+|||+|.++..+++   .++   +|+++|-+++...+++.+..|+.           .++|++.+.|.
T Consensus       352 ~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~-----------~dkVtVI~gd~  420 (637)
T 4gqb_A          352 EEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEW-----------GSQVTVVSSDM  420 (637)
T ss_dssp             GGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTT-----------GGGEEEEESCT
T ss_pred             ccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccC-----------CCeEEEEeCcc
Confidence            33445667999999999998554444   332   48999987777788888888864           56899999888


Q ss_pred             CCCccccccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcE
Q 029065          111 GNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTT  154 (199)
Q Consensus       111 ~~~~~~~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~  154 (199)
                      ++.+    ..+++|+||+--+-|.  .+....++....++|+|||.
T Consensus       421 eev~----LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGi  462 (637)
T 4gqb_A          421 REWV----APEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGV  462 (637)
T ss_dssp             TTCC----CSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEE
T ss_pred             eecc----CCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcE
Confidence            7553    2368999987533332  23344788899999999885

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.78  E-value=2.2e-08  Score=90.91  Aligned_cols=107  Identities=14%  Similarity=0.052  Sum_probs=77.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--------------------------------------------CeEEEeech-hHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--------------------------------------------CNVITTDQI-EVL   76 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--------------------------------------------~~v~~~D~~-~~l   76 (199)
                      .+..|||.+||+|.+.+.+|..+                                            .+|+|+|++ .++
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av  269 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI  269 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence            46799999999999999888653                                            469999995 599


Q ss_pred             HHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccC----CcChHHHHHHHHHhc---
Q 029065           77 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALS---  149 (199)
Q Consensus        77 ~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~----~~~~~~~l~~l~~~l---  149 (199)
                      +.|+.|+..++.           ...+++.+.|..+... +...+.||+|++|+|+..    ......+.+.+.+.+   
T Consensus       270 ~~A~~N~~~agv-----------~~~i~~~~~D~~~~~~-~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~  337 (703)
T 3v97_A          270 QRARTNARLAGI-----------GELITFEVKDVAQLTN-PLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ  337 (703)
T ss_dssp             HHHHHHHHHTTC-----------GGGEEEEECCGGGCCC-SCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC-----------CCceEEEECChhhCcc-ccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence            999999999875           2358888888764321 111238999999998643    223455555554443   


Q ss_pred             CCCcEEEEEEE
Q 029065          150 GPKTTILLGYE  160 (199)
Q Consensus       150 ~~~g~i~i~~~  160 (199)
                      .|||.+++...
T Consensus       338 ~~g~~~~ilt~  348 (703)
T 3v97_A          338 FGGWNLSLFSA  348 (703)
T ss_dssp             CTTCEEEEEES
T ss_pred             CCCCeEEEEeC
Confidence            47998887754

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.69  E-value=3.7e-08  Score=80.02  Aligned_cols=77  Identities=17%  Similarity=0.116  Sum_probs=56.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCe----EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCN----VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~----v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++.+|||||||+|.++..++..+.+    |+++|+++ +++.++++.  ..              ++++.+.|....+..
T Consensus        42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~~--------------~v~~i~~D~~~~~~~  105 (279)
T 3uzu_A           42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--GE--------------LLELHAGDALTFDFG  105 (279)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--GG--------------GEEEEESCGGGCCGG
T ss_pred             CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--CC--------------CcEEEECChhcCChh
Confidence            5779999999999999999988877    99999954 999998883  21              678888887655422


Q ss_pred             cccC-C--CccEEEEeccccC
Q 029065          117 KAVA-P--PFDYIIGTDVVYA  134 (199)
Q Consensus       117 ~~~~-~--~fD~Ii~~~~~~~  134 (199)
                      .... .  ....|++|.+++-
T Consensus       106 ~~~~~~~~~~~~vv~NlPY~i  126 (279)
T 3uzu_A          106 SIARPGDEPSLRIIGNLPYNI  126 (279)
T ss_dssp             GGSCSSSSCCEEEEEECCHHH
T ss_pred             HhcccccCCceEEEEccCccc
Confidence            2111 1  3456888876543

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.69  E-value=2.5e-07  Score=84.39  Aligned_cols=133  Identities=11%  Similarity=-0.008  Sum_probs=85.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC-----CeEEEeech-hHHHHH--HHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG-----CNVITTDQI-EVLPLL--KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g-----~~v~~~D~~-~~l~~a--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ++.+|||.|||+|.+.+.++...     .+++|+|++ .+++.|  +.|+..|...+        ......+...|+...
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Llh--------Gi~~~~I~~dD~L~~  392 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVS--------SNNAPTITGEDVCSL  392 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCB--------TTBCCEEECCCGGGC
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhc--------CCCcceEEecchhcc
Confidence            57799999999999998888653     359999995 488888  66655543211        011123333333221


Q ss_pred             ccccccCCCccEEEEeccccCCc-----------------------------ChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          114 DHIKAVAPPFDYIIGTDVVYAEH-----------------------------LLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       114 ~~~~~~~~~fD~Ii~~~~~~~~~-----------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      .  ....+.||+||+|+|+....                             ....++..+.++|+++|.+.+..+..--
T Consensus       393 ~--~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~L  470 (878)
T 3s1s_A          393 N--PEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYL  470 (878)
T ss_dssp             C--GGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHH
T ss_pred             c--ccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHh
Confidence            1  12246899999999984311                             1344778888999999999888886321


Q ss_pred             ----hHHHHHHHHHHhCCeEEEec
Q 029065          165 ----SVHEQMLQMWKSNFNVKLVP  184 (199)
Q Consensus       165 ----~~~~~~~~~~~~~~~v~~~~  184 (199)
                          .....+.+.+.+.+.+..+-
T Consensus       471 f~sg~~~kkLRk~LLe~~~I~aII  494 (878)
T 3s1s_A          471 TAQGNESKAFREFLVGNFGLEHIF  494 (878)
T ss_dssp             HCCSHHHHHHHHHHTTTTCEEEEE
T ss_pred             ccCChHHHHHHHHHHhCCCeEEEE
Confidence                12455666666666665443

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.69  E-value=4.1e-08  Score=80.16  Aligned_cols=107  Identities=20%  Similarity=0.181  Sum_probs=68.4

Q ss_pred             CCCCcEEEeCCCc------ChHHHHHH-hh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEE-EEeee
Q 029065           41 LKGKRVIELGAGC------GVAGFGMA-LL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-VELDW  110 (199)
Q Consensus        41 ~~~~~VLdlGcG~------G~~sl~la-~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~d~  110 (199)
                      -++.+|||||||+      |.  ..++ ..  +++|+++|+++.       +  .               ++++ .+.|+
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------v--~---------------~v~~~i~gD~  115 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------V--S---------------DADSTLIGDC  115 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------B--C---------------SSSEEEESCG
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------C--C---------------CCEEEEECcc
Confidence            3578999999944      65  3344 33  367999998654       0  1               3566 77777


Q ss_pred             CCCccccccCCCccEEEEeccccC-----------CcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh-CC
Q 029065          111 GNEDHIKAVAPPFDYIIGTDVVYA-----------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NF  178 (199)
Q Consensus       111 ~~~~~~~~~~~~fD~Ii~~~~~~~-----------~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~-~~  178 (199)
                      ....    ..+.||+|+++.....           ...+..+++.+.++|+|||.+++........  +.+.+.+.. +|
T Consensus       116 ~~~~----~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~--~~l~~~l~~~GF  189 (290)
T 2xyq_A          116 ATVH----TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--ADLYKLMGHFSW  189 (290)
T ss_dssp             GGCC----CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--HHHHHHHTTEEE
T ss_pred             ccCC----ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCH--HHHHHHHHHcCC
Confidence            5332    1368999999743211           1234588999999999999998866433221  345555544 36


Q ss_pred             e
Q 029065          179 N  179 (199)
Q Consensus       179 ~  179 (199)
                      .
T Consensus       190 ~  190 (290)
T 2xyq_A          190 W  190 (290)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.62  E-value=1.1e-07  Score=75.93  Aligned_cols=74  Identities=14%  Similarity=0.122  Sum_probs=53.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC-CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g-~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ++.+|||||||+|.++..++..| .+|+++|++. +++.++++   .             ..++++.+.|....+.... 
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~-------------~~~v~~i~~D~~~~~~~~~-   93 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---G-------------DERLEVINEDASKFPFCSL-   93 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---C-------------CTTEEEECSCTTTCCGGGS-
T ss_pred             CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---c-------------CCCeEEEEcchhhCChhHc-
Confidence            57799999999999999999986 7899999955 88888766   1             2367888888765432211 


Q ss_pred             CCCccEEEEecccc
Q 029065          120 APPFDYIIGTDVVY  133 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~  133 (199)
                      .+.| .|+++.+++
T Consensus        94 ~~~~-~vv~NlPy~  106 (249)
T 3ftd_A           94 GKEL-KVVGNLPYN  106 (249)
T ss_dssp             CSSE-EEEEECCTT
T ss_pred             cCCc-EEEEECchh
Confidence            1233 667766653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.59  E-value=2.3e-08  Score=80.04  Aligned_cols=77  Identities=10%  Similarity=-0.012  Sum_probs=53.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCe--EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCN--VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~--v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||||||+|.++. +++ +.+  |+++|++ .+++.+++++...              .++++.+.|....+....
T Consensus        21 ~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~--------------~~v~~i~~D~~~~~~~~~   84 (252)
T 1qyr_A           21 KGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG--------------PKLTIYQQDAMTFNFGEL   84 (252)
T ss_dssp             TTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG--------------GGEEEECSCGGGCCHHHH
T ss_pred             CcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC--------------CceEEEECchhhCCHHHh
Confidence            46799999999999999 765 677  9999995 5999888765432              267888888765432111


Q ss_pred             c--CCCccEEEEeccccC
Q 029065          119 V--APPFDYIIGTDVVYA  134 (199)
Q Consensus       119 ~--~~~fD~Ii~~~~~~~  134 (199)
                      .  .+..+.|++|.+++-
T Consensus        85 ~~~~~~~~~vvsNlPY~i  102 (252)
T 1qyr_A           85 AEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             HHHHTSCEEEEEECCTTT
T ss_pred             hcccCCceEEEECCCCCc
Confidence            0  124578888877643

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.59  E-value=6.2e-08  Score=79.47  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=58.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~  117 (199)
                      ++.+|||+|||+|..++.++..  +.+|+++|.+ .+++.|++++..++             .++++.+.|+.+... ..
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-------------~~v~~v~~d~~~l~~~l~   92 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-------------DRVSLFKVSYREADFLLK   92 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-------------TTEEEEECCGGGHHHHHH
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEECCHHHHHHHHH
Confidence            5679999999999999999987  4789999995 49999999987653             378898888754321 11


Q ss_pred             c-cCCCccEEEEecc
Q 029065          118 A-VAPPFDYIIGTDV  131 (199)
Q Consensus       118 ~-~~~~fD~Ii~~~~  131 (199)
                      . ...+||.|+++.+
T Consensus        93 ~~g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           93 TLGIEKVDGILMDLG  107 (301)
T ss_dssp             HTTCSCEEEEEEECS
T ss_pred             hcCCCCCCEEEEcCc
Confidence            1 1157999998754

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.59  E-value=1e-06  Score=68.15  Aligned_cols=131  Identities=15%  Similarity=0.025  Sum_probs=83.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-----
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-----  114 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-----  114 (199)
                      ..++|||+|||  .-++.+|+. +.+|+.+|.+ +..+.|++++..++..         ..+++++...|.....     
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~---------~~~~I~~~~gda~~~~~wg~p   98 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPA---------EGTEVNIVWTDIGPTGDWGHP   98 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCC---------TTCEEEEEECCCSSBCGGGCB
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---------CCCceEEEEeCchhhhccccc
Confidence            45799999985  568888876 6889999984 5889999999887530         0246888877754320     


Q ss_pred             -------ccc--------c-cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE-ecC-hhHHHHHHHHHH-
Q 029065          115 -------HIK--------A-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE-IRS-TSVHEQMLQMWK-  175 (199)
Q Consensus       115 -------~~~--------~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~-~~~-~~~~~~~~~~~~-  175 (199)
                             ...        . ..++||+|+...-     .....+..+.++|+|||.+++-.- .|. ......|+.... 
T Consensus        99 ~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~~~~~~~~~  173 (202)
T 3cvo_A           99 VSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFDDYSQRRWQHQVEEFLGAPLM  173 (202)
T ss_dssp             SSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEETTGGGCSSGGGGHHHHCCCEE
T ss_pred             ccchhhhhHHHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEeCCcCCcchHHHHHHHhHHhh
Confidence                   011        1 1368999998763     223556667789999998855432 232 223445555332 


Q ss_pred             -hCCeEEEecCCCc
Q 029065          176 -SNFNVKLVPKAKE  188 (199)
Q Consensus       176 -~~~~v~~~~~~~~  188 (199)
                       ....+..+.+...
T Consensus       174 ~~~~a~f~~~p~~~  187 (202)
T 3cvo_A          174 IGRLAAFQVEPQPI  187 (202)
T ss_dssp             ETTEEEEEECCCCC
T ss_pred             cCceEEEEeCCCCC
Confidence             2345555555443

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.55  E-value=3e-07  Score=81.20  Aligned_cols=124  Identities=11%  Similarity=0.010  Sum_probs=81.4

Q ss_pred             cEEEeCCCcChHHHHHHhh-----------------CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEE
Q 029065           45 RVIELGAGCGVAGFGMALL-----------------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV  106 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la~~-----------------g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~  106 (199)
                      +|||.+||+|.+.+.++..                 ...++|+|++ .++..|+.|+..++..           ..+.+.
T Consensus       247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-----------~~i~i~  315 (544)
T 3khk_A          247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID-----------FNFGKK  315 (544)
T ss_dssp             EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC-----------CBCCSS
T ss_pred             eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC-----------ccccee
Confidence            8999999999776666432                 3469999995 5999999999888642           122223


Q ss_pred             EeeeCCCccccccCCCccEEEEeccccCCc-----------------------C------hHHHHHHHHHhcCCCcEEEE
Q 029065          107 ELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----------------------L------LEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       107 ~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~-----------------------~------~~~~l~~l~~~l~~~g~i~i  157 (199)
                      +.|.....  .....+||+|++|+|+....                       .      --.++..+.++|+|+|.+.+
T Consensus       316 ~gDtL~~~--~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai  393 (544)
T 3khk_A          316 NADSFLDD--QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMAL  393 (544)
T ss_dssp             SCCTTTSC--SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccchhcCc--ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence            33322111  11246899999999985321                       0      01588899999999999888


Q ss_pred             EEEec----ChhHHHHHHHHHHhCCeEE
Q 029065          158 GYEIR----STSVHEQMLQMWKSNFNVK  181 (199)
Q Consensus       158 ~~~~~----~~~~~~~~~~~~~~~~~v~  181 (199)
                      ..+..    .......+.+.+...+.+.
T Consensus       394 VlP~g~L~~~~~~~~~iRk~Lle~~~l~  421 (544)
T 3khk_A          394 LLANGSMSSNTNNEGEIRKTLVEQDLVE  421 (544)
T ss_dssp             EEETHHHHCCGGGHHHHHHHHHHTTCEE
T ss_pred             EecchhhhcCcchHHHHHHHHHhCCcHh
Confidence            87742    2123456666665555443

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.54  E-value=1.2e-07  Score=85.25  Aligned_cols=100  Identities=17%  Similarity=0.100  Sum_probs=67.3

Q ss_pred             CCcEEEeCCCcChHHHHH---Hh-hC---------C--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEE
Q 029065           43 GKRVIELGAGCGVAGFGM---AL-LG---------C--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV  106 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~l---a~-~g---------~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~  106 (199)
                      ++.|||+|||+|.++..+   +. .+         .  +|+++|-+. +...++.... |+.           .++|++.
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~-----------~d~VtVI  477 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW-----------KRRVTII  477 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT-----------TTCSEEE
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC-----------CCeEEEE
Confidence            468999999999987543   32 23         2  699999854 4444444333 543           5679999


Q ss_pred             EeeeCCCccc--cccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcE
Q 029065          107 ELDWGNEDHI--KAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTT  154 (199)
Q Consensus       107 ~~d~~~~~~~--~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~  154 (199)
                      ..|.++....  ....++.|+||+--+-|.  .+.....+....++|+|+|.
T Consensus       478 ~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi  529 (745)
T 3ua3_A          478 ESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTI  529 (745)
T ss_dssp             ESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCE
T ss_pred             eCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcE
Confidence            9887654321  011468999998755443  44566788888899999985

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.44  E-value=1.3e-07  Score=76.49  Aligned_cols=120  Identities=8%  Similarity=-0.025  Sum_probs=90.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC-cccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~~~~~  119 (199)
                      .+..+||+-+|||.+++.+.+.+.+++++|. +..++..++|+...              .++++.+.|.... ......
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~--------------~~~~V~~~D~~~~L~~l~~~  156 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN--------------KKVYVNHTDGVSKLNALLPP  156 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT--------------SCEEEECSCHHHHHHHHCSC
T ss_pred             cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcC--------------CcEEEEeCcHHHHHHHhcCC
Confidence            4678999999999999999997777999998 55888887776432              3677777664221 111122


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHh--cCCCcEEEEEEEecChhHHHHHHHHHH
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILLGYEIRSTSVHEQMLQMWK  175 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~--l~~~g~i~i~~~~~~~~~~~~~~~~~~  175 (199)
                      ..+||+|+..+++-....+..++..+.+.  +.++|++.+=+|.........|.+.+.
T Consensus       157 ~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~  214 (283)
T 2oo3_A          157 PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMR  214 (283)
T ss_dssp             TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHH
Confidence            34799999987765467899999888764  679999999999877766777777764

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.36  E-value=1.4e-06  Score=73.41  Aligned_cols=122  Identities=12%  Similarity=-0.077  Sum_probs=74.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHh--------h---------CCeEEEeechh-HHHHHHHHHHHhhhccc--cCCCCCCCC
Q 029065           41 LKGKRVIELGAGCGVAGFGMAL--------L---------GCNVITTDQIE-VLPLLKRNVEWNTSRIS--QMNPGSDLL  100 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~--------~---------g~~v~~~D~~~-~l~~a~~~~~~~~~~~~--~~~~~~~~~  100 (199)
                      .+..+|+|+|||+|.+++.+..        .         ..+|...|++. -....-+.+........  ...+  ...
T Consensus        51 ~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~--~~~  128 (374)
T 3b5i_A           51 PPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLA--ADG  128 (374)
T ss_dssp             CCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC-----CC
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhcc--ccC
Confidence            3467999999999998888731        1         13588889743 33333232221100000  0000  000


Q ss_pred             CcEEEEEeeeCCCccccccCCCccEEEEeccccCCc--------------------------------------ChHHHH
Q 029065          101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------------------LLEPLL  142 (199)
Q Consensus       101 ~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~--------------------------------------~~~~~l  142 (199)
                      ...-+....-+.+.....+.+.||+|+++-+++|.+                                      ++..++
T Consensus       129 ~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL  208 (374)
T 3b5i_A          129 NRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFL  208 (374)
T ss_dssp             CBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence            011233444455444445678999999999999854                                      344568


Q ss_pred             HHHHHhcCCCcEEEEEEEecCh
Q 029065          143 QTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       143 ~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      +...+.|+|||.++++...+..
T Consensus       209 ~~ra~eL~pGG~mvl~~~gr~~  230 (374)
T 3b5i_A          209 RARAAEVKRGGAMFLVCLGRTS  230 (374)
T ss_dssp             HHHHHHEEEEEEEEEEEEECCC
T ss_pred             HHHHHHhCCCCEEEEEEecCCC
Confidence            8889999999999999988754

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.26  E-value=9.2e-06  Score=68.59  Aligned_cols=112  Identities=15%  Similarity=0.081  Sum_probs=72.0

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--------------C-----CeEEEeech--h---HHHHH---HHHHHH-hhhccccCC
Q 029065           43 GKRVIELGAGCGVAGFGMALL--------------G-----CNVITTDQI--E---VLPLL---KRNVEW-NTSRISQMN   94 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--------------g-----~~v~~~D~~--~---~l~~a---~~~~~~-~~~~~~~~~   94 (199)
                      ..+|+|+||++|..++.+...              +     .+|+..|++  +   +.+..   .+.+.. .+.      
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~------  126 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR------  126 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC------
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC------
Confidence            578999999999988877753              1     248888974  1   22222   222111 110      


Q ss_pred             CCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCCcChH-----------------------------------
Q 029065           95 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE-----------------------------------  139 (199)
Q Consensus        95 ~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~-----------------------------------  139 (199)
                           ....-+....-+.+-....+.+.||+|+++-+++|.+..+                                   
T Consensus       127 -----~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~  201 (384)
T 2efj_A          127 -----KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFT  201 (384)
T ss_dssp             -----CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHH
T ss_pred             -----CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHH
Confidence                 0122444445555544455678999999999998844321                                   


Q ss_pred             ----HHHHHHHHhcCCCcEEEEEEEecChh
Q 029065          140 ----PLLQTIFALSGPKTTILLGYEIRSTS  165 (199)
Q Consensus       140 ----~~l~~l~~~l~~~g~i~i~~~~~~~~  165 (199)
                          .+++...+.|+|||++++....+...
T Consensus       202 ~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~  231 (384)
T 2efj_A          202 KDFTTFLRIHSEELISRGRMLLTFICKEDE  231 (384)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHHHhccCCeEEEEEecCCCc
Confidence                23666789999999999999887554

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.23  E-value=2.3e-05  Score=63.81  Aligned_cols=131  Identities=12%  Similarity=0.028  Sum_probs=87.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeec-hhHHHHHHHHHHH-hhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~-~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      +.++||=||.|.|.....+.+.  ..+|+.+|+ +.+++.+++-+.. +.-..        ...++++...|....-  .
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~--------~dpRv~v~~~Dg~~~l--~  152 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSY--------DDPRFKLVIDDGVNFV--N  152 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG--------GCTTEEEEESCTTTTT--S
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcccccccc--------CCCcEEEEechHHHHH--h
Confidence            4689999999999988888865  356999999 5599999887643 21110        1357888888876443  2


Q ss_pred             ccCCCccEEEEec--cccCCc--ChHHHHHHHHHhcCCCcEEEEEEEe--cChhHHHHHHHHHHhCCeEEE
Q 029065          118 AVAPPFDYIIGTD--VVYAEH--LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFNVKL  182 (199)
Q Consensus       118 ~~~~~fD~Ii~~~--~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~~v~~  182 (199)
                      ...++||+||...  +.....  .-..+++.+++.|+|+|++..-...  -..+......+.+..-|....
T Consensus       153 ~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~  223 (294)
T 3o4f_A          153 QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVG  223 (294)
T ss_dssp             CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEE
T ss_pred             hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCcee
Confidence            3457899999752  222211  3568999999999999987664332  223334455555655554433

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.21  E-value=7.8e-06  Score=65.46  Aligned_cols=135  Identities=11%  Similarity=0.018  Sum_probs=72.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-------C-------CeEEEeec-h---hHHH-----------HHHHHHHHhhhcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-------G-------CNVITTDQ-I---EVLP-----------LLKRNVEWNTSRISQ   92 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-------g-------~~v~~~D~-~---~~l~-----------~a~~~~~~~~~~~~~   92 (199)
                      ++.+|||+|+|+|...+.++..       +       .+|+++|. +   +.+.           .++..+......+..
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            3469999999999988776542       2       25999985 3   2333           344443321000000


Q ss_pred             CC--CCCCCCCcEEEEEeeeCCCccccccC----CCccEEEEecccc---CCcC-hHHHHHHHHHhcCCCcEEEEEEEec
Q 029065           93 MN--PGSDLLGSIQAVELDWGNEDHIKAVA----PPFDYIIGTDVVY---AEHL-LEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus        93 ~~--~~~~~~~~i~~~~~d~~~~~~~~~~~----~~fD~Ii~~~~~~---~~~~-~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..  ...+...++++...|..+.  ++...    ..||+|+... +-   +++. ...+++.+.++|+|||++.. +.. 
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~--l~~~~~~~~~~~D~iflD~-fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t-ysa-  214 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINEL--ISQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLAT-FTS-  214 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHH--GGGSCGGGTTCEEEEEECS-SCTTTCGGGCCHHHHHHHHHHEEEEEEEEE-SCC-
T ss_pred             hhheeccCCceEEEEEECcHHHH--HhhcccccCCeEEEEEECC-CCcccChhhcCHHHHHHHHHHcCCCcEEEE-EeC-
Confidence            00  0000112455555555321  11112    3799999853 22   2222 46799999999999998653 221 


Q ss_pred             ChhHHHHHHHHH-HhCCeEEEecC
Q 029065          163 STSVHEQMLQMW-KSNFNVKLVPK  185 (199)
Q Consensus       163 ~~~~~~~~~~~~-~~~~~v~~~~~  185 (199)
                      ..    .+...+ ..+|+|+++..
T Consensus       215 a~----~vrr~L~~aGF~v~~~~g  234 (257)
T 2qy6_A          215 AG----FVRRGLQEAGFTMQKRKG  234 (257)
T ss_dssp             BH----HHHHHHHHHTEEEEEECC
T ss_pred             CH----HHHHHHHHCCCEEEeCCC
Confidence            22    222222 35899887644

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.09  E-value=3.1e-05  Score=62.27  Aligned_cols=127  Identities=15%  Similarity=0.002  Sum_probs=70.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.+|||||||+|-++..++.. ++. |+++|+.. + . ..   .....         ....++.....+.   +....
T Consensus        74 ~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl-~-~~---pi~~~---------~~g~~ii~~~~~~---dv~~l  136 (277)
T 3evf_A           74 LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDG-H-EK---PMNVQ---------SLGWNIITFKDKT---DIHRL  136 (277)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT-C-CC---CCCCC---------BTTGGGEEEECSC---CTTTS
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccC-c-cc---ccccC---------cCCCCeEEEeccc---eehhc
Confidence            3568999999999999988865 554 88888632 1 0 00   00000         0000222222222   11222


Q ss_pred             cCCCccEEEEeccccCCcC----h---HHHHHHHHHhcCCC-cEEEEEEEecC-hhHHHHHHHHHHhCCe-EEEecCCC
Q 029065          119 VAPPFDYIIGTDVVYAEHL----L---EPLLQTIFALSGPK-TTILLGYEIRS-TSVHEQMLQMWKSNFN-VKLVPKAK  187 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~----~---~~~l~~l~~~l~~~-g~i~i~~~~~~-~~~~~~~~~~~~~~~~-v~~~~~~~  187 (199)
                      ..++||+|++.-... ...    .   -.+++.+.++|+|| |.+++ .-.+. ......+++.+...|. |....+.+
T Consensus       137 ~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~pyg~~~~~l~~~lk~~F~~V~~~KPaS  213 (277)
T 3evf_A          137 EPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLAPYMPDVLEKLELLQRRFGGTVIRNPLS  213 (277)
T ss_dssp             CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESCTTSHHHHHHHHHHHHHHCCEEECCTTS
T ss_pred             CCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecCCCCccHHHHHHHHHHhcCCEEEEeCCC
Confidence            356899999964433 111    1   13467778999999 98777 33341 3345667777776663 45444433

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.02  E-value=5.4e-06  Score=69.43  Aligned_cols=112  Identities=11%  Similarity=-0.006  Sum_probs=75.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh------------C------CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL------------G------CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGS  102 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~------------g------~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~  102 (199)
                      +..+|+|+||++|..++.+...            +      .+|+..|++. ....+-+.+....       +  ..  .
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-------~--~~--~  119 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-------D--VD--G  119 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-------S--CT--T
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-------c--cC--C
Confidence            3468999999999777665532            2      2488999854 5555544432210       0  00  2


Q ss_pred             EEEEEeeeCCCccccccCCCccEEEEeccccCCcC---------------------------------hHHHHHHHHHhc
Q 029065          103 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------------------LEPLLQTIFALS  149 (199)
Q Consensus       103 i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~---------------------------------~~~~l~~l~~~l  149 (199)
                      .-+....-+.+-....+.+.+|+|+++-.++|.+.                                 +..+++...+.|
T Consensus       120 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL  199 (359)
T 1m6e_X          120 VCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEV  199 (359)
T ss_dssp             CEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHB
T ss_pred             CEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            24444555665545566789999999999988332                                 234588889999


Q ss_pred             CCCcEEEEEEEecCh
Q 029065          150 GPKTTILLGYEIRST  164 (199)
Q Consensus       150 ~~~g~i~i~~~~~~~  164 (199)
                      +|||++++....+..
T Consensus       200 ~pGG~mvl~~~gr~~  214 (359)
T 1m6e_X          200 VPGGRMVLTILGRRS  214 (359)
T ss_dssp             CTTCEEEEEEEECSS
T ss_pred             cCCceEEEEEecCCC
Confidence            999999999988754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.92  E-value=1.5e-05  Score=64.97  Aligned_cols=45  Identities=20%  Similarity=0.232  Sum_probs=40.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHh
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWN   86 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~   86 (199)
                      +|..|||+|||+|..++.++..|.+++++|++ .+++.|++++...
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999995 5999999988654

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.90  E-value=1e-05  Score=65.19  Aligned_cols=127  Identities=11%  Similarity=-0.086  Sum_probs=70.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHh-hCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~-~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.+|||||||+|-++..++. .++. |+++|+.. +...+... ...             ..++.....+   .+....
T Consensus        90 ~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~-------------g~~ii~~~~~---~dv~~l  152 (282)
T 3gcz_A           90 PTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTL-------------GWNLIRFKDK---TDVFNM  152 (282)
T ss_dssp             CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBT-------------TGGGEEEECS---CCGGGS
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccC-------------CCceEEeeCC---cchhhc
Confidence            456999999999999998885 4654 89999732 11111000 000             0112211111   111222


Q ss_pred             cCCCccEEEEeccccCCcC-------hHHHHHHHHHhcCCC--cEEEEEEEec-ChhHHHHHHHHHHhCCe-EEEecCCC
Q 029065          119 VAPPFDYIIGTDVVYAEHL-------LEPLLQTIFALSGPK--TTILLGYEIR-STSVHEQMLQMWKSNFN-VKLVPKAK  187 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~-------~~~~l~~l~~~l~~~--g~i~i~~~~~-~~~~~~~~~~~~~~~~~-v~~~~~~~  187 (199)
                      ...++|+|++.-... ...       ...++....++|+||  |.+++-. .+ .......+++.+...|. |....+.+
T Consensus       153 ~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv-F~pyg~~~~~l~~~lk~~F~~V~~~KPaS  230 (282)
T 3gcz_A          153 EVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV-LCPYTPLIMEELSRLQLKHGGGLVRVPLS  230 (282)
T ss_dssp             CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE-SCCCSHHHHHHHHHHHHHHCCEEECCTTS
T ss_pred             CCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE-ecCCCccHHHHHHHHHHhcCCEEEEcCCC
Confidence            357899999974443 211       113567777889999  9866633 33 13335667777776653 44444433

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.89  E-value=3.1e-05  Score=64.89  Aligned_cols=85  Identities=13%  Similarity=0.024  Sum_probs=57.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      +|.+||||||.+|-++..++.+|++|+++|...+-+..    ..              ..++++...|.....   ...+
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l----~~--------------~~~V~~~~~d~~~~~---~~~~  269 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSL----MD--------------TGQVTWLREDGFKFR---PTRS  269 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHH----HT--------------TTCEEEECSCTTTCC---CCSS
T ss_pred             CCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhh----cc--------------CCCeEEEeCcccccc---CCCC
Confidence            58899999999999999999999999999975432211    11              236777766643322   2346


Q ss_pred             CccEEEEeccccCCcChHHHHHHHHHhcCC
Q 029065          122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGP  151 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~  151 (199)
                      +||+|++.-..    .+..+...+.+++..
T Consensus       270 ~~D~vvsDm~~----~p~~~~~l~~~wl~~  295 (375)
T 4auk_A          270 NISWMVCDMVE----KPAKVAALMAQWLVN  295 (375)
T ss_dssp             CEEEEEECCSS----CHHHHHHHHHHHHHT
T ss_pred             CcCEEEEcCCC----ChHHhHHHHHHHHhc
Confidence            89999985443    344455555555443

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.85  E-value=0.00044  Score=60.79  Aligned_cols=128  Identities=13%  Similarity=-0.007  Sum_probs=78.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---------------CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEE
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA  105 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---------------g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~  105 (199)
                      .+.+|+|-.||+|.+-+.+...               ...+.|.|+. .+...|+-|+..++..            ...+
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~------------~~~I  284 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE------------YPRI  284 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS------------CCEE
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc------------cccc
Confidence            4669999999999765555431               2359999994 5889999999888642            2233


Q ss_pred             EEeeeCCCcc-ccccCCCccEEEEeccccCCc----------------ChHHHHHHHHHhcC-------CCcEEEEEEEe
Q 029065          106 VELDWGNEDH-IKAVAPPFDYIIGTDVVYAEH----------------LLEPLLQTIFALSG-------PKTTILLGYEI  161 (199)
Q Consensus       106 ~~~d~~~~~~-~~~~~~~fD~Ii~~~~~~~~~----------------~~~~~l~~l~~~l~-------~~g~i~i~~~~  161 (199)
                      ...|-..... ......+||+|++|+|+-...                .-..+++.+.+.|+       +||++.+..+.
T Consensus       285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~  364 (530)
T 3ufb_A          285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPN  364 (530)
T ss_dssp             ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred             cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence            3333221111 111235799999999983211                12235666777776       69998888775


Q ss_pred             c---ChhHHHHHHHHHHhCCeEE
Q 029065          162 R---STSVHEQMLQMWKSNFNVK  181 (199)
Q Consensus       162 ~---~~~~~~~~~~~~~~~~~v~  181 (199)
                      .   .......+.+.+.+.+.+.
T Consensus       365 g~Lf~~~~~~~iRk~Lle~~~l~  387 (530)
T 3ufb_A          365 GTLFSDGISARIKEELLKNFNLH  387 (530)
T ss_dssp             HHHHCCTHHHHHHHHHHHHSEEE
T ss_pred             hhhhccchHHHHHHHHhhcCEEE
Confidence            2   1222345666665555554

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.84  E-value=0.00011  Score=61.43  Aligned_cols=126  Identities=14%  Similarity=0.151  Sum_probs=83.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC--eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~--~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +|.+|||+.||+|-=+..++..+.  .|+++|++. -++.+++|+...+...      -....++.+...|.....  ..
T Consensus       148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~------~~~~~~v~v~~~D~~~~~--~~  219 (359)
T 4fzv_A          148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEE------IRDGNQVRVTSWDGRKWG--EL  219 (359)
T ss_dssp             TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTT------TTTSSSEEEECCCGGGHH--HH
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhh------hccCCceEEEeCchhhcc--hh
Confidence            578999999999988888887765  499999954 7888888888765310      001235666665543221  12


Q ss_pred             cCCCccEEEEeccccC--------Cc----------------ChHHHHHHHHHhcCCCcEEEEEEEe----cChhHHHHH
Q 029065          119 VAPPFDYIIGTDVVYA--------EH----------------LLEPLLQTIFALSGPKTTILLGYEI----RSTSVHEQM  170 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~--------~~----------------~~~~~l~~l~~~l~~~g~i~i~~~~----~~~~~~~~~  170 (199)
                      ..+.||.|++..+.-.        ..                .-..++....++|+|||.++-++..    .+..+.+.|
T Consensus       220 ~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~  299 (359)
T 4fzv_A          220 EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGA  299 (359)
T ss_dssp             STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHH
T ss_pred             ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHH
Confidence            2468999998755321        00                1245677777889999998777654    234456777


Q ss_pred             HHHHH
Q 029065          171 LQMWK  175 (199)
Q Consensus       171 ~~~~~  175 (199)
                      ++...
T Consensus       300 L~~~~  304 (359)
T 4fzv_A          300 IELLA  304 (359)
T ss_dssp             HHHHH
T ss_pred             HHhCC
Confidence            76654

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.75  E-value=5.5e-05  Score=61.34  Aligned_cols=128  Identities=12%  Similarity=-0.050  Sum_probs=71.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-CCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-GCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .++++||||||++|-++..++.. ++. |+++|+.. ....... ...             ....+.....+   .+...
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~-------------~~~~iv~~~~~---~di~~  142 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT-------------LGWNIVKFKDK---SNVFT  142 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB-------------TTGGGEEEECS---CCTTT
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc-------------cCCceEEeecC---ceeee
Confidence            36789999999999999999964 554 88999732 1000000 000             00011111111   11111


Q ss_pred             ccCCCccEEEEeccccCCcC-------hHHHHHHHHHhcCCC-cEEEEEEEec-ChhHHHHHHHHHHhCCe-EEEecCCC
Q 029065          118 AVAPPFDYIIGTDVVYAEHL-------LEPLLQTIFALSGPK-TTILLGYEIR-STSVHEQMLQMWKSNFN-VKLVPKAK  187 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~-------~~~~l~~l~~~l~~~-g~i~i~~~~~-~~~~~~~~~~~~~~~~~-v~~~~~~~  187 (199)
                      ...+++|+|++.-... ...       ...++....++|+|| |.+++- -.+ .......+++.+...|. |....+.+
T Consensus       143 l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K-vF~~yG~~~~~ll~~lk~~F~~V~~~KPaS  220 (300)
T 3eld_A          143 MPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVK-VLAPYHPDVIEKLERLQLRFGGGIVRVPFS  220 (300)
T ss_dssp             SCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE-ESSTTSHHHHHHHHHHHHHHCCEEECCTTS
T ss_pred             cCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE-eccccCccHHHHHHHHHHhCCcEEEEeCCC
Confidence            2246899999964433 222       134577778899999 986664 333 13335666777766653 44444433

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.73  E-value=8.9e-05  Score=60.05  Aligned_cols=105  Identities=11%  Similarity=0.028  Sum_probs=73.1

Q ss_pred             CCcEEEeCCCcChHHHHHHhh-------CCeEEEeech---------------------------hHHHHHHHHHHHhhh
Q 029065           43 GKRVIELGAGCGVAGFGMALL-------GCNVITTDQI---------------------------EVLPLLKRNVEWNTS   88 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~-------g~~v~~~D~~---------------------------~~l~~a~~~~~~~~~   88 (199)
                      .++|||+|+..|.-++.++..       +.+|+++|..                           ..++.+++|+...+.
T Consensus       107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl  186 (282)
T 2wk1_A          107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL  186 (282)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred             CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence            459999999999888777642       4569999941                           135667888887753


Q ss_pred             ccccCCCCCCCCCcEEEEEeeeCCCcccc-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065           89 RISQMNPGSDLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus        89 ~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .          .+++++...+..+.  ++ ...++||+|....-.|  ......++.+..+|+|||.+++-+..
T Consensus       187 ~----------~~~I~li~Gda~et--L~~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pGGiIv~DD~~  246 (282)
T 2wk1_A          187 L----------DEQVRFLPGWFKDT--LPTAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVGGYVIVDDYM  246 (282)
T ss_dssp             C----------STTEEEEESCHHHH--STTCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEEEEEEESSCT
T ss_pred             C----------cCceEEEEeCHHHH--HhhCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCCEEEEEcCCC
Confidence            1          25799998777422  22 2246899998864222  23456788899999999987776653

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.66  E-value=0.00024  Score=56.48  Aligned_cols=121  Identities=12%  Similarity=-0.061  Sum_probs=63.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe-eeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~~~~  118 (199)
                      ++.+|+||||++|-++..++..  ...|.+.++.--+            +.....|.+....-+.+... |+.+.     
T Consensus        73 pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~------------~~~P~~~~~~Gv~~i~~~~G~Df~~~-----  135 (269)
T 2px2_A           73 PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG------------HEEPMLMQSYGWNIVTMKSGVDVFYK-----  135 (269)
T ss_dssp             CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT------------SCCCCCCCSTTGGGEEEECSCCGGGS-----
T ss_pred             CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc------------ccCCCcccCCCceEEEeeccCCccCC-----
Confidence            4789999999999999999986  2233444321100            00000000000112344444 66432     


Q ss_pred             cCCCccEEEEeccccCC---cChH---HHHHHHHHhcCCCc-EEEEEEEecChhHHHHHHHHHHhCCe
Q 029065          119 VAPPFDYIIGTDVVYAE---HLLE---PLLQTIFALSGPKT-TILLGYEIRSTSVHEQMLQMWKSNFN  179 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~---~~~~---~~l~~l~~~l~~~g-~i~i~~~~~~~~~~~~~~~~~~~~~~  179 (199)
                      ...++|+|+|.-.-...   .+..   .++....++|+||| .+++-.-......+..+++.+...|.
T Consensus       136 ~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~~F~  203 (269)
T 2px2_A          136 PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQRRFG  203 (269)
T ss_dssp             CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHHHHC
T ss_pred             CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHHHcC
Confidence            13589999986332211   1111   15666778899999 66553222111334455666666553

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.60  E-value=5.4e-05  Score=55.31  Aligned_cols=32  Identities=28%  Similarity=0.288  Sum_probs=28.5

Q ss_pred             CCcEEEeCCCcC-hHHHHHHh-hCCeEEEeechh
Q 029065           43 GKRVIELGAGCG-VAGFGMAL-LGCNVITTDQIE   74 (199)
Q Consensus        43 ~~~VLdlGcG~G-~~sl~la~-~g~~v~~~D~~~   74 (199)
                      +.+|||+|||.| ..+..++. .|..|+++|+++
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp   69 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKP   69 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCcEEEEccCCChHHHHHHHHhCCCeEEEEECCc
Confidence            569999999999 59999997 899999999844

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.58  E-value=0.00011  Score=61.72  Aligned_cols=132  Identities=16%  Similarity=0.051  Sum_probs=79.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC-CeEEEeec-hhHHHHHHHHHHH-hhhccccCCCCCCCCCcEEEEEeeeCCCcc-cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDH-IK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g-~~v~~~D~-~~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~  117 (199)
                      +.++||=||.|.|.....+.+.. .+|+.+|+ +.+++.+++-+.. ++..  ...|   ..+++++...|....-. ..
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~--~d~p---r~~rv~vii~Da~~fl~~~~  279 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV--LDNL---KGDCYQVLIEDCIPVLKRYA  279 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----C--CSSS---EETTEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhh--hccc---cccceeeehHHHHHHHHhhh
Confidence            35899999999998888777654 45999999 5599999886422 1100  0001   12356766655432211 01


Q ss_pred             ccCCCccEEEEeccc--cC--------CcChHHHHHHHHHhcCCCcEEEEEEE-ecChhHHHHHHHHHHhCC
Q 029065          118 AVAPPFDYIIGTDVV--YA--------EHLLEPLLQTIFALSGPKTTILLGYE-IRSTSVHEQMLQMWKSNF  178 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~--~~--------~~~~~~~l~~l~~~l~~~g~i~i~~~-~~~~~~~~~~~~~~~~~~  178 (199)
                      ...++||+||..-+-  ..        .-...++++.+++.|+|+|++..-.. ....+....+.+.+.+-|
T Consensus       280 ~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF  351 (381)
T 3c6k_A          280 KEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLY  351 (381)
T ss_dssp             HHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSS
T ss_pred             hccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhC
Confidence            224689999986211  01        01246788999999999998765322 222333455666666654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.52  E-value=0.00012  Score=58.28  Aligned_cols=46  Identities=20%  Similarity=0.125  Sum_probs=40.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhh
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNT   87 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~   87 (199)
                      +|..|||.+||+|..++.+++.|.+++++|++ .+++.+++++..++
T Consensus       212 ~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          212 PNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            57899999999999999999999999999995 49999999987664

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.35  E-value=0.00022  Score=57.55  Aligned_cols=72  Identities=19%  Similarity=0.169  Sum_probs=52.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-cc-
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KA-  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-~~-  118 (199)
                      ++..++|.+||.|-.+..++..+.+|+++|. +.+++.+++ +..               .++.+.+.++.+.... .. 
T Consensus        22 ~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~---------------~rv~lv~~~f~~l~~~L~~~   85 (285)
T 1wg8_A           22 PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL---------------PGLTVVQGNFRHLKRHLAAL   85 (285)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC---------------TTEEEEESCGGGHHHHHHHT
T ss_pred             CCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc---------------CCEEEEECCcchHHHHHHHc
Confidence            4679999999999999999988889999999 459988877 422               2677777776544321 11 


Q ss_pred             cCCCccEEEEe
Q 029065          119 VAPPFDYIIGT  129 (199)
Q Consensus       119 ~~~~fD~Ii~~  129 (199)
                      ..+++|.|++.
T Consensus        86 g~~~vDgIL~D   96 (285)
T 1wg8_A           86 GVERVDGILAD   96 (285)
T ss_dssp             TCSCEEEEEEE
T ss_pred             CCCCcCEEEeC
Confidence            11468887764

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.23  E-value=0.00019  Score=56.49  Aligned_cols=113  Identities=12%  Similarity=-0.035  Sum_probs=62.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHh-hCCe-EEEeechh--H-HHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe-eeCCCcc
Q 029065           42 KGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQIE--V-LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDH  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~-~g~~-v~~~D~~~--~-l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-d~~~~~~  115 (199)
                      .+.+||||||++|-++..++. .|++ |+++|+-.  - .+...+..   +            -..+++... |+...  
T Consensus        78 ~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~---g------------wn~v~fk~gvDv~~~--  140 (267)
T 3p8z_A           78 PEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTY---G------------WNIVKLMSGKDVFYL--  140 (267)
T ss_dssp             CCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCT---T------------TTSEEEECSCCGGGC--
T ss_pred             CCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhc---C------------cCceEEEeccceeec--
Confidence            456999999999999997775 4666 99999622  1 00000000   1            124666665 54211  


Q ss_pred             ccccCCCccEEEEeccccCCcC----h---HHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHh
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHL----L---EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS  176 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~----~---~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~  176 (199)
                         ...++|.|+|.--- ....    .   -.+++.+.++|++ +.+++-.-.-......++++.+..
T Consensus       141 ---~~~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~p~v~e~l~~lq~  203 (267)
T 3p8z_A          141 ---PPEKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYMPTVIEHLERLQR  203 (267)
T ss_dssp             ---CCCCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCSHHHHHHHHHHHH
T ss_pred             ---CCccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCChhHHHHHHHHHH
Confidence               23679999986222 2221    1   1255556677888 666663332222223345555554

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.20  E-value=0.00026  Score=58.79  Aligned_cols=73  Identities=19%  Similarity=0.095  Sum_probs=49.4

Q ss_pred             CCcEEEeCCCcChHHHHHHhhC--Ce-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALLG--CN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g--~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..+|+||.||+|.+++.+...|  .+ |.++|++. +++..+.|...                 ..+...|+........
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----------------~~~~~~Di~~~~~~~~   64 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------------TQLLAKTIEGITLEEF   64 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------------SCEECSCGGGCCHHHH
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----------------cccccCCHHHccHhHc
Confidence            3589999999999999999998  45 99999954 77777776421                 1234455543321111


Q ss_pred             cCCCccEEEEeccc
Q 029065          119 VAPPFDYIIGTDVV  132 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~  132 (199)
                      ....+|+|+++++.
T Consensus        65 ~~~~~D~l~~gpPC   78 (343)
T 1g55_A           65 DRLSFDMILMSPPC   78 (343)
T ss_dssp             HHHCCSEEEECCC-
T ss_pred             CcCCcCEEEEcCCC
Confidence            11269999999874

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.20  E-value=0.00072  Score=56.90  Aligned_cols=72  Identities=22%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc---
Q 029065           44 KRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA---  118 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~---  118 (199)
                      .+|+||.||+|-+++.+...|.+ |.++|+.+ +++..+.|..                 ...+...|+........   
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~-----------------~~~~~~~DI~~~~~~~~~~~   65 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP-----------------RSLHVQEDVSLLNAEIIKGF   65 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT-----------------TSEEECCCGGGCCHHHHHHH
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC-----------------CCceEecChhhcCHHHHHhh
Confidence            47999999999999999999998 77999954 7666666532                 22445556654432111   


Q ss_pred             --cCCCccEEEEeccc
Q 029065          119 --VAPPFDYIIGTDVV  132 (199)
Q Consensus       119 --~~~~fD~Ii~~~~~  132 (199)
                        ..+.+|+|++.++.
T Consensus        66 ~~~~~~~D~i~ggpPC   81 (376)
T 3g7u_A           66 FKNDMPIDGIIGGPPC   81 (376)
T ss_dssp             HCSCCCCCEEEECCCC
T ss_pred             cccCCCeeEEEecCCC
Confidence              23579999998775

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.19  E-value=0.001  Score=54.93  Aligned_cols=75  Identities=20%  Similarity=0.170  Sum_probs=52.5

Q ss_pred             CCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           37 CPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ++....+.+|+||+||+|-+++.+...|.+ |.++|++. +++..+.|....                .   ..|+....
T Consensus         5 ~~~~~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~----------------~---~~Di~~~~   65 (327)
T 2c7p_A            5 KDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK----------------P---EGDITQVN   65 (327)
T ss_dssp             SSCTTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC----------------C---BSCGGGSC
T ss_pred             cccccCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC----------------C---cCCHHHcC
Confidence            344556789999999999999999999998 88899854 777776664211                1   34444332


Q ss_pred             cccccCCCccEEEEeccc
Q 029065          115 HIKAVAPPFDYIIGTDVV  132 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~  132 (199)
                      ..  ....+|+|+++++.
T Consensus        66 ~~--~~~~~D~l~~gpPC   81 (327)
T 2c7p_A           66 EK--TIPDHDILCAGFPC   81 (327)
T ss_dssp             GG--GSCCCSEEEEECCC
T ss_pred             Hh--hCCCCCEEEECCCC
Confidence            11  12469999999776

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.00  E-value=0.00079  Score=54.59  Aligned_cols=31  Identities=29%  Similarity=0.266  Sum_probs=26.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHh-hCCe-EEEeec
Q 029065           42 KGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQ   72 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~-~g~~-v~~~D~   72 (199)
                      .+.+||||||++|-++..++. .|++ |+++|+
T Consensus        94 ~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdv  126 (321)
T 3lkz_A           94 PVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTK  126 (321)
T ss_dssp             CCEEEEEETCTTCHHHHHHTTCTTEEEEEEECC
T ss_pred             CCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEc
Confidence            456999999999999997775 4776 999996

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.96  E-value=0.0083  Score=48.70  Aligned_cols=111  Identities=19%  Similarity=0.110  Sum_probs=65.3

Q ss_pred             CCCcEEEeCCCc--C--hHHHHHHhh---CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           42 KGKRVIELGAGC--G--VAGFGMALL---GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        42 ~~~~VLdlGcG~--G--~~sl~la~~---g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      .|.+|||||||+  |  .=|..+.+.   |+.|+++|+.++..                      ... .+.+.|...  
T Consensus       109 ~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s----------------------da~-~~IqGD~~~--  163 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS----------------------DAD-STLIGDCAT--  163 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC----------------------SSS-EEEESCGGG--
T ss_pred             CCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc----------------------CCC-eEEEccccc--
Confidence            578999999843  2  223344433   45799999755210                      011 335666432  


Q ss_pred             cccccCCCccEEEEecccc---C--------CcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEE
Q 029065          115 HIKAVAPPFDYIIGTDVVY---A--------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL  182 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~---~--------~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~  182 (199)
                        ....++||+|++.-..-   +        ....+.++..+.+.|+|||.+++-.-....   ..++.++.+.|....
T Consensus       164 --~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg---~~~L~~lrk~F~~VK  237 (344)
T 3r24_A          164 --VHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW---NADLYKLMGHFSWWT  237 (344)
T ss_dssp             --EEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC---CHHHHHHHTTEEEEE
T ss_pred             --cccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC---HHHHHHHHhhCCeEE
Confidence              12257899999862211   1        113666788889999999998776543333   234555556776533

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.60  E-value=0.00087  Score=68.45  Aligned_cols=100  Identities=18%  Similarity=0.074  Sum_probs=45.2

Q ss_pred             CCcEEEeCCCcChHHHHH-HhhC------CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           43 GKRVIELGAGCGVAGFGM-ALLG------CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~l-a~~g------~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..+|||||+|+|..+..+ ...+      ..++.+|++. ..+.+++.+...               .+.....|..+. 
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---------------di~~~~~d~~~~- 1304 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---------------HVTQGQWDPANP- 1304 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---------------TEEEECCCSSCC-
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---------------cccccccccccc-
Confidence            458999999998543222 2222      2599999854 666666654332               122211222111 


Q ss_pred             cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          115 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                       .......||+||++.+++...+....+..++++|+|+|.+++..
T Consensus      1305 -~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1305 -APGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             -CC-----CCEEEEECC--------------------CCEEEEEE
T ss_pred             -ccCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence             01123569999999999888888999999999999999887754

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.29  E-value=0.0053  Score=50.71  Aligned_cols=72  Identities=15%  Similarity=0.087  Sum_probs=48.1

Q ss_pred             CcEEEeCCCcChHHHHHHhhCC--e-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           44 KRVIELGAGCGVAGFGMALLGC--N-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~--~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+++||.||.|-+++.+...|.  + |.++|+++ +++.-+.|..                 .......|+.........
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----------------~~~~~~~DI~~~~~~~~~   66 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----------------ETNLLNRNIQQLTPQVIK   66 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------------TSCEECCCGGGCCHHHHH
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----------------CCceeccccccCCHHHhc
Confidence            3799999999999999998885  5 78899855 6665555532                 112344555544322222


Q ss_pred             CCCccEEEEeccc
Q 029065          120 APPFDYIIGTDVV  132 (199)
Q Consensus       120 ~~~fD~Ii~~~~~  132 (199)
                      ...+|+++++++.
T Consensus        67 ~~~~D~l~ggpPC   79 (333)
T 4h0n_A           67 KWNVDTILMSPPC   79 (333)
T ss_dssp             HTTCCEEEECCCC
T ss_pred             cCCCCEEEecCCC
Confidence            2369999988775

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.17  E-value=0.0065  Score=50.64  Aligned_cols=55  Identities=13%  Similarity=0.058  Sum_probs=41.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      ++..|||||.|.|.++..++..  +.+|+++++.. .++..+... .              ..++++.+.|..
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--------------~~~l~ii~~D~l  115 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--------------GSPLQILKRDPY  115 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--------------TSSCEEECSCTT
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--------------CCCEEEEECCcc
Confidence            3578999999999999999976  55799999844 777666654 1              236777777764

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.91  E-value=0.0088  Score=48.56  Aligned_cols=74  Identities=22%  Similarity=0.177  Sum_probs=49.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeE---EEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNV---ITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v---~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ...+|+||.||.|-+++.+...|.++   .++|+++ +++..+.|..                 .......|+.+.....
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----------------~~~~~~~DI~~i~~~~   77 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----------------GKIMYVGDVRSVTQKH   77 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----------------TCEEEECCGGGCCHHH
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----------------CCceeCCChHHccHHH
Confidence            34699999999999999999998764   7889854 6555554421                 1234455665443211


Q ss_pred             cc-CCCccEEEEeccc
Q 029065          118 AV-APPFDYIIGTDVV  132 (199)
Q Consensus       118 ~~-~~~fD~Ii~~~~~  132 (199)
                      .. .+.+|+|+++++.
T Consensus        78 i~~~~~~Dll~ggpPC   93 (295)
T 2qrv_A           78 IQEWGPFDLVIGGSPC   93 (295)
T ss_dssp             HHHTCCCSEEEECCCC
T ss_pred             hcccCCcCEEEecCCC
Confidence            11 2479999998765

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.90  E-value=0.018  Score=46.95  Aligned_cols=69  Identities=19%  Similarity=0.204  Sum_probs=48.2

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           44 KRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      .+||||.||.|-+++.+...|.+ |.++|+.+ +++.-+.|..                  -.....|+.+....  .-+
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~------------------~~~~~~DI~~i~~~--~~~   60 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------------------AKLIKGDISKISSD--EFP   60 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC------------------SEEEESCGGGCCGG--GSC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------------------CCcccCChhhCCHh--hCC
Confidence            36999999999999999999998 77889854 6666555521                  13445566543321  235


Q ss_pred             CccEEEEeccc
Q 029065          122 PFDYIIGTDVV  132 (199)
Q Consensus       122 ~fD~Ii~~~~~  132 (199)
                      ..|++++.+|.
T Consensus        61 ~~D~l~ggpPC   71 (331)
T 3ubt_Y           61 KCDGIIGGPPS   71 (331)
T ss_dssp             CCSEEECCCCG
T ss_pred             cccEEEecCCC
Confidence            79999988765

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.71  E-value=0.014  Score=48.07  Aligned_cols=120  Identities=10%  Similarity=0.025  Sum_probs=69.1

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCC--e-E-EEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           43 GKRVIELGAGCGVAGFGMALLGC--N-V-ITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~--~-v-~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ..+++||.||.|-+++.+...|.  + | .++|+++ +++..+.|....                  ....|+.+.....
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------------------~~~~DI~~~~~~~   71 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------------------VQVKNLDSISIKQ   71 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------------------CBCCCTTTCCHHH
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------------------cccCChhhcCHHH
Confidence            35899999999999999999883  5 6 6999955 766666664211                  2234444333211


Q ss_pred             ccCCCccEEEEeccccCC-----------cCh-HHHHHHHHH-hcCC---CcEEEEEEEecC---hhHHHHHHHHHH-hC
Q 029065          118 AVAPPFDYIIGTDVVYAE-----------HLL-EPLLQTIFA-LSGP---KTTILLGYEIRS---TSVHEQMLQMWK-SN  177 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~-----------~~~-~~~l~~l~~-~l~~---~g~i~i~~~~~~---~~~~~~~~~~~~-~~  177 (199)
                      .....+|+++++++.-..           .+. ..++..+.+ +++.   ...+++...+..   ...+..+.+.+. .+
T Consensus        72 i~~~~~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~~~G  151 (327)
T 3qv2_A           72 IESLNCNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQ  151 (327)
T ss_dssp             HHHTCCCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHHHTT
T ss_pred             hccCCCCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHHhCC
Confidence            122379999998774222           122 245555555 5431   133444444432   234556666664 36


Q ss_pred             CeE
Q 029065          178 FNV  180 (199)
Q Consensus       178 ~~v  180 (199)
                      |.+
T Consensus       152 Y~v  154 (327)
T 3qv2_A          152 YYI  154 (327)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            766

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.62  E-value=0.037  Score=46.86  Aligned_cols=45  Identities=16%  Similarity=0.177  Sum_probs=38.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHH-hhC---CeEEEeec-hhHHHHHHHHHHH
Q 029065           41 LKGKRVIELGAGCGVAGFGMA-LLG---CNVITTDQ-IEVLPLLKRNVEW   85 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la-~~g---~~v~~~D~-~~~l~~a~~~~~~   85 (199)
                      -++..|+|+||+.|..++.++ +.+   ++|+++|. +...+.+++|+..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            367899999999999999887 443   57999998 5689999999987

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.45  E-value=0.014  Score=47.76  Aligned_cols=44  Identities=9%  Similarity=-0.015  Sum_probs=38.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEW   85 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~   85 (199)
                      +|..|||-.||+|..++.+.+.|-+.+++|+++ +++.+++++..
T Consensus       252 ~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          252 PDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            577999999999999999999999999999955 88888777643

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.13  E-value=0.026  Score=46.22  Aligned_cols=45  Identities=27%  Similarity=0.211  Sum_probs=37.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-h---hHHHHHHHHHHHh
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-I---EVLPLLKRNVEWN   86 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~---~~l~~a~~~~~~~   86 (199)
                      +|..|||-.||+|..++++...|-+.+++|+ +   ..++.+++++...
T Consensus       242 ~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          242 PGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHc
Confidence            5779999999999999999999999999998 5   6778887776544

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=94.93  E-value=0.2  Score=41.17  Aligned_cols=119  Identities=13%  Similarity=0.072  Sum_probs=73.6

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhcc-----ccCCCCCC----CCCcEEEEEeeeC
Q 029065           43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRI-----SQMNPGSD----LLGSIQAVELDWG  111 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~-----~~~~~~~~----~~~~i~~~~~d~~  111 (199)
                      .+.|+.||||......-+...  +.+++=+|.+++++.-++.+...+...     ....+..+    ...+...+..|+.
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~  177 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN  177 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence            469999999999877777764  445777788887777666665542100     00000000    1246788888887


Q ss_pred             CCccc----c--ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          112 NEDHI----K--AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       112 ~~~~~----~--~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      +....    .  .......++++-.+++.  .+....+++.+.... |+|.+++.+...
T Consensus       178 d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~  235 (334)
T 1rjd_A          178 DITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIG  235 (334)
T ss_dssp             CHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred             CcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccC
Confidence            64321    1  12245677777777655  557888899998877 677765555443

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.80  E-value=0.23  Score=38.98  Aligned_cols=110  Identities=16%  Similarity=0.139  Sum_probs=66.7

Q ss_pred             CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-h-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      .+..++++++|=-|++.|+   ++..++..|++|++++. + +.++.+...+...             ..++.+..+|..
T Consensus        12 ~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~   78 (270)
T 3is3_A           12 IPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL-------------GSDAIAIKADIR   78 (270)
T ss_dssp             CTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------TCCEEEEECCTT
T ss_pred             CCCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCC
Confidence            4566889999999988764   55566677999998875 3 3444444444333             236778888887


Q ss_pred             CCcccc-------ccCCCccEEEEeccccCCc--------C-----------hHHHHHHHHHhcCCCcEEEEEE
Q 029065          112 NEDHIK-------AVAPPFDYIIGTDVVYAEH--------L-----------LEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       112 ~~~~~~-------~~~~~fD~Ii~~~~~~~~~--------~-----------~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      +.+...       ..-++.|++|.+.-+....        .           .-.+.+.+...++++|.+++..
T Consensus        79 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  152 (270)
T 3is3_A           79 QVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS  152 (270)
T ss_dssp             SHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            654221       1124789998775543211        1           2233445556666777765543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.71  E-value=0.057  Score=44.51  Aligned_cols=97  Identities=13%  Similarity=-0.037  Sum_probs=58.3

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEE-----eeeC
Q 029065           41 LKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-----LDWG  111 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~d~~  111 (199)
                      -+|.+||=+|+|. |..++.+|+. |++ |+++|.+ +-++.+++. ...               .+....     .++.
T Consensus       178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~---------------~~~~~~~~~~~~~~~  241 (363)
T 3m6i_A          178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPE---------------VVTHKVERLSAEESA  241 (363)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTT---------------CEEEECCSCCHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chh---------------cccccccccchHHHH
Confidence            3578999999975 7788888864 887 9999974 466666543 111               122110     0110


Q ss_pred             CCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          112 NEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       112 ~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..-........+|+|+-.-      .-...+....+.|+++|.+++..
T Consensus       242 ~~v~~~t~g~g~Dvvid~~------g~~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          242 KKIVESFGGIEPAVALECT------GVESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             HHHHHHTSSCCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECC
T ss_pred             HHHHHHhCCCCCCEEEECC------CChHHHHHHHHHhcCCCEEEEEc
Confidence            0000001134799988642      23356788888999999877653

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=94.53  E-value=0.17  Score=39.89  Aligned_cols=83  Identities=19%  Similarity=0.326  Sum_probs=55.3

Q ss_pred             CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ||..++||.+|==|++.|+   ++..++..|++|+.+|.+.. +.+.+.+...+             .+......|..+.
T Consensus         3 n~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~-~~~~~~~~~~g-------------~~~~~~~~Dv~d~   68 (247)
T 4hp8_A            3 NPFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP-DETLDIIAKDG-------------GNASALLIDFADP   68 (247)
T ss_dssp             CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC-HHHHHHHHHTT-------------CCEEEEECCTTST
T ss_pred             CCcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH-HHHHHHHHHhC-------------CcEEEEEccCCCH
Confidence            4667899999999998874   66777788999999997432 22222333332             3567777888665


Q ss_pred             cccc--ccCCCccEEEEecccc
Q 029065          114 DHIK--AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       114 ~~~~--~~~~~fD~Ii~~~~~~  133 (199)
                      ....  ...++.|+++-|.-+.
T Consensus        69 ~~v~~~~~~g~iDiLVNNAGi~   90 (247)
T 4hp8_A           69 LAAKDSFTDAGFDILVNNAGII   90 (247)
T ss_dssp             TTTTTSSTTTCCCEEEECCCCC
T ss_pred             HHHHHHHHhCCCCEEEECCCCC
Confidence            4322  1236799999876553

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.35  E-value=0.017  Score=47.96  Aligned_cols=93  Identities=17%  Similarity=0.205  Sum_probs=57.2

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc--
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--  114 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--  114 (199)
                      -+|.+||-+|||. |...+.+|+ .|+ +|+++|.+ +-++.+++    .+..              .+  +|....+  
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--------------~v--i~~~~~~~~  248 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGAT--------------HV--INSKTQDPV  248 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTCS--------------EE--EETTTSCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCC--------------EE--ecCCccCHH
Confidence            3578999999986 877777776 488 59999974 45555543    2211              11  2222111  


Q ss_pred             -cc-cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          115 -HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       115 -~~-~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                       .. ....+.+|+|+-.-      .....+....+.|+++|.+++..
T Consensus       249 ~~~~~~~~gg~D~vid~~------g~~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          249 AAIKEITDGGVNFALEST------GSPEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             HHHHHHTTSCEEEEEECS------CCHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHhcCCCCcEEEECC------CCHHHHHHHHHHHhcCCEEEEeC
Confidence             00 11123799987542      12456788888999999876643

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=94.32  E-value=0.48  Score=37.29  Aligned_cols=83  Identities=20%  Similarity=0.253  Sum_probs=53.1

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-h-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      ...++++++|=-|++.|+   ++..++..|++|+++|. + +.++.+...+...             ..++.+..+|..+
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~d   92 (271)
T 3v2g_A           26 SISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA-------------GGRAVAIRADNRD   92 (271)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------TCCEEEEECCTTC
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc-------------CCcEEEEECCCCC
Confidence            345789999999998764   55666677999999875 3 3444444444333             2357778888876


Q ss_pred             Ccccc-------ccCCCccEEEEecccc
Q 029065          113 EDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       113 ~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      .+...       ..-++.|++|.+.-+.
T Consensus        93 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~  120 (271)
T 3v2g_A           93 AEAIEQAIRETVEALGGLDILVNSAGIW  120 (271)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence            54221       1124789998876543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.13  E-value=0.56  Score=38.14  Aligned_cols=59  Identities=17%  Similarity=0.077  Sum_probs=36.9

Q ss_pred             CCccEEEEeccccCC---cCh-HHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecC
Q 029065          121 PPFDYIIGTDVVYAE---HLL-EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK  185 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~---~~~-~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (199)
                      ..||+|+..+ +-..   +++ ..+++.+.++++|||++. ++.. ... ..+  .....||+|+++..
T Consensus       185 ~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~la-TYta-ag~-VRR--~L~~aGF~V~k~~G  247 (308)
T 3vyw_A          185 FKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWV-SYSS-SLS-VRK--SLLTLGFKVGSSRE  247 (308)
T ss_dssp             CCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEE-ESCC-CHH-HHH--HHHHTTCEEEEEEC
T ss_pred             cceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEE-EEeC-cHH-HHH--HHHHCCCEEEecCC
Confidence            4799998854 3222   222 578999999999999743 3332 222 121  22346899988765

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.08  E-value=0.031  Score=46.06  Aligned_cols=93  Identities=20%  Similarity=0.200  Sum_probs=56.7

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC---C
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN---E  113 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~---~  113 (199)
                      -+|.+||-+|+|. |...+.+|+ .|+ +|+++|.++ -++.+++    .+.            +  .+  +|...   .
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa------------~--~v--i~~~~~~~~  229 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGA------------D--LV--LQISKESPQ  229 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC------------S--EE--EECSSCCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCC------------C--EE--EcCcccccc
Confidence            3578999999975 777777776 588 799999744 5555532    231            1  11  22220   0


Q ss_pred             c---cc-cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          114 D---HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       114 ~---~~-~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      +   .. ....+.+|+|+-.-      .....+....+.|+++|.+++..
T Consensus       230 ~~~~~i~~~~~~g~D~vid~~------g~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          230 EIARKVEGQLGCKPEVTIECT------GAEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHHHHHHHHHTSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECS
T ss_pred             hHHHHHHHHhCCCCCEEEECC------CChHHHHHHHHHhcCCCEEEEEe
Confidence            0   00 01124799998642      22356777888999999876643

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.02  E-value=0.47  Score=37.24  Aligned_cols=82  Identities=18%  Similarity=0.182  Sum_probs=52.3

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech------------h-HHHHHHHHHHHhhhccccCCCCCCCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI------------E-VLPLLKRNVEWNTSRISQMNPGSDLLGS  102 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~------------~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~  102 (199)
                      ..+++++||=-|++.|+   ++..++..|++|+++|.+            . .++.+...+...             ..+
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~   72 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT-------------GRK   72 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT-------------TSC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc-------------CCc
Confidence            35789999999997764   555666779999999853            2 333333333332             236


Q ss_pred             EEEEEeeeCCCcccc-------ccCCCccEEEEecccc
Q 029065          103 IQAVELDWGNEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       103 i~~~~~d~~~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +.+..+|+.+.....       ..-++.|++|.+.-+.
T Consensus        73 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  110 (287)
T 3pxx_A           73 AYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGIC  110 (287)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             eEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            788888887654221       1124789998876553

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.99  E-value=0.067  Score=43.64  Aligned_cols=93  Identities=18%  Similarity=0.175  Sum_probs=57.9

Q ss_pred             CCCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-
Q 029065           40 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-  115 (199)
                      .-+|.+||-.|+|. |...+.+|+ .|++|+++|.+ +-++.+++    .+..            .    .+|..+.+. 
T Consensus       164 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~------------~----~i~~~~~~~~  223 (340)
T 3s2e_A          164 TRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGAE------------V----AVNARDTDPA  223 (340)
T ss_dssp             CCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS------------E----EEETTTSCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCC------------E----EEeCCCcCHH
Confidence            34678999999975 888888886 48999999974 45555433    2311            1    122222111 


Q ss_pred             --ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          116 --IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       116 --~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                        .....+.+|+|+-.-      .-...++...+.|+++|.+.+.
T Consensus       224 ~~~~~~~g~~d~vid~~------g~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          224 AWLQKEIGGAHGVLVTA------VSPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             HHHHHHHSSEEEEEESS------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHhCCCCCEEEEeC------CCHHHHHHHHHHhccCCEEEEe
Confidence              001123788887542      2346778888899999987665

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=93.90  E-value=0.016  Score=47.73  Aligned_cols=92  Identities=14%  Similarity=0.130  Sum_probs=55.6

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHhh-CC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~~-g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      -+|.+||=+|+|. |..++.+|+. |+ +|+++|.++ -++.+++    .+..              .+  +|..+.+..
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~--------------~v--i~~~~~~~~  224 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGAT--------------DI--INYKNGDIV  224 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTCC--------------EE--ECGGGSCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc--------------eE--EcCCCcCHH
Confidence            3578999999976 7778777764 88 699999844 5555543    2211              11  222111100


Q ss_pred             ----c-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          117 ----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       117 ----~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                          . .....+|+|+-.-      .-...+....+.|+++|.+.+.
T Consensus       225 ~~v~~~t~g~g~D~v~d~~------g~~~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          225 EQILKATDGKGVDKVVIAG------GDVHTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             HHHHHHTTTCCEEEEEECS------SCTTHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHcCCCCCCEEEECC------CChHHHHHHHHHHhcCCEEEEe
Confidence                0 1123699998542      2235677788889998886643

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=93.84  E-value=0.47  Score=37.70  Aligned_cols=81  Identities=23%  Similarity=0.226  Sum_probs=51.5

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-h-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ..+++++||=.|++.|+   ++..++..|++|+++|.+ + ..+.+...+...             ..++.+..+|..+.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~  109 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE-------------GVKCVLLPGDLSDE  109 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT-------------TCCEEEEESCTTSH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-------------CCcEEEEECCCCCH
Confidence            45689999999987764   455566679999999863 2 334333333332             23677888888765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      +...       ..-++.|++|.+.-+
T Consensus       110 ~~v~~~~~~~~~~~g~iD~lvnnAg~  135 (291)
T 3ijr_A          110 QHCKDIVQETVRQLGSLNILVNNVAQ  135 (291)
T ss_dssp             HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            4211       112478999877443

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.83  E-value=0.2  Score=41.01  Aligned_cols=93  Identities=19%  Similarity=0.145  Sum_probs=56.7

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC-Ccc-
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-EDH-  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~-  115 (199)
                      -+|.+||-+|+|. |...+.+|+ .|++|+++|.+ +-++.+++    .+.            +  .+  +|..+ .+. 
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~--~~--~~~~~~~~~~  226 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGA------------D--VT--LVVDPAKEEE  226 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC------------S--EE--EECCTTTSCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC------------C--EE--EcCcccccHH
Confidence            3578999999875 777777775 58899999974 35555542    231            1  11  22221 110 


Q ss_pred             --cc--cc---CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 --IK--AV---APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 --~~--~~---~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                        ..  ..   ...+|+|+-+-      .....+....+.|+++|.+++..
T Consensus       227 ~~i~~~~~~~~g~g~D~vid~~------g~~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          227 SSIIERIRSAIGDLPNVTIDCS------GNEKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             HHHHHHHHHHSSSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECS
T ss_pred             HHHHHHhccccCCCCCEEEECC------CCHHHHHHHHHHHhcCCEEEEEe
Confidence              00  11   24699998642      12346777888999999876643

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.80  E-value=0.24  Score=41.28  Aligned_cols=97  Identities=22%  Similarity=0.178  Sum_probs=59.6

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-  115 (199)
                      -+|.+||-+|||. |+.++.+|+ .|+ +|+++|.+ +-++.+++    .+.               +  ..+....+. 
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa---------------~--~i~~~~~~~~  242 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF---------------E--IADLSLDTPL  242 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC---------------E--EEETTSSSCH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC---------------c--EEccCCcchH
Confidence            3678999999976 888888886 488 59999974 45555533    221               2  133322110 


Q ss_pred             ---c-cc-cCCCccEEEEeccc---------cCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          116 ---I-KA-VAPPFDYIIGTDVV---------YAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       116 ---~-~~-~~~~fD~Ii~~~~~---------~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                         . .. ....+|+|+-.-..         ++.......+....+.|+++|.+++.
T Consensus       243 ~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          243 HEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             HHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence               0 01 12469999854221         12233445788888999999987654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=93.80  E-value=0.04  Score=45.76  Aligned_cols=92  Identities=25%  Similarity=0.277  Sum_probs=53.6

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      -+|.+||-+|+|. |...+.+|+ .|++|+++|. ++-++.+++    .+.            ..  +  +|..+.+...
T Consensus       193 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~----lGa------------~~--v--i~~~~~~~~~  252 (369)
T 1uuf_A          193 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGA------------DE--V--VNSRNADEMA  252 (369)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTC------------SE--E--EETTCHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC------------cE--E--eccccHHHHH
Confidence            3578999999975 777777775 5899999997 446666543    221            11  1  2222111111


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      ...+.+|+|+-.-.  .    ...+....+.++++|.+++.
T Consensus       253 ~~~~g~Dvvid~~g--~----~~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          253 AHLKSFDFILNTVA--A----PHNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             TTTTCEEEEEECCS--S----CCCHHHHHTTEEEEEEEEEC
T ss_pred             HhhcCCCEEEECCC--C----HHHHHHHHHHhccCCEEEEe
Confidence            11257898875421  1    12355566778888876553

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=93.71  E-value=0.52  Score=38.26  Aligned_cols=109  Identities=16%  Similarity=0.143  Sum_probs=70.8

Q ss_pred             CcEEEeCCCcChHHHHHHh-hCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc----
Q 029065           44 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA----  118 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~-~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~----  118 (199)
                      ..|++||||.=.-...+.. .+.+|+=+|.+.++...++.+...+..         ...+..++..|+.+ .....    
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~---------~~~~~~~v~~Dl~d-~~~~~l~~~  173 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVT---------PTADRREVPIDLRQ-DWPPALRSA  173 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCC---------CSSEEEEEECCTTS-CHHHHHHHT
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCC---------CCCCeEEEecchHh-hHHHHHHhc
Confidence            4799999997655444442 246788899888888888877654321         13456777788765 21111    


Q ss_pred             --cCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          119 --VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       119 --~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                        .....-++++-.++++  ......+++.+...+.||+.+.+.....
T Consensus       174 g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~  221 (310)
T 2uyo_A          174 GFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL  221 (310)
T ss_dssp             TCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             cCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence              1123445566666655  4467788999998888888877766543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=93.63  E-value=0.056  Score=44.65  Aligned_cols=39  Identities=15%  Similarity=0.112  Sum_probs=32.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C--CeEEEeec-hhHHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLK   80 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~-~~~l~~a~   80 (199)
                      +|..++|..||.|-.+..++.. +  .+|+++|. +.+++.++
T Consensus        57 pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           57 PDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             CCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            4779999999999999988865 3  47999999 45888874

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.61  E-value=0.64  Score=36.25  Aligned_cols=80  Identities=13%  Similarity=0.128  Sum_probs=52.9

Q ss_pred             CCCCCcEEEeCCCc--Ch---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           40 KLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        40 ~~~~~~VLdlGcG~--G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      .++||++|=-|++.  |+   ++..++..|++|+.+|.+ +.++.+.+.+...+            ..++.+..+|..+.
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~   70 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN------------QPEAHLYQIDVQSD   70 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT------------CSSCEEEECCTTCH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------------CCcEEEEEccCCCH
Confidence            47899999999632  53   667777889999999984 36666555444332            23567778888765


Q ss_pred             cccc-------ccCCCccEEEEecc
Q 029065          114 DHIK-------AVAPPFDYIIGTDV  131 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~  131 (199)
                      +...       ..-++.|+++.+.-
T Consensus        71 ~~v~~~~~~~~~~~G~iD~lvnnAg   95 (256)
T 4fs3_A           71 EEVINGFEQIGKDVGNIDGVYHSIA   95 (256)
T ss_dssp             HHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeccc
Confidence            4221       11268999987744

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=93.46  E-value=0.24  Score=39.09  Aligned_cols=82  Identities=23%  Similarity=0.245  Sum_probs=56.7

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..++..|++|+.+|.+ +.++.+.+.+...+             .++....+|..+.+.
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g-------------~~~~~~~~Dv~~~~~   72 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG-------------YDAHGVAFDVTDELA   72 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-------------CCEEECCCCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHH
Confidence            5789999999998874   667777889999999984 46565555554443             256777788776542


Q ss_pred             c-------cccCCCccEEEEeccccC
Q 029065          116 I-------KAVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       116 ~-------~~~~~~fD~Ii~~~~~~~  134 (199)
                      .       ...-++.|++|.+.-+..
T Consensus        73 v~~~~~~~~~~~G~iDiLVNNAG~~~   98 (255)
T 4g81_D           73 IEAAFSKLDAEGIHVDILINNAGIQY   98 (255)
T ss_dssp             HHHHHHHHHHTTCCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHCCCCcEEEECCCCCC
Confidence            2       122367999998865543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=93.45  E-value=0.7  Score=35.89  Aligned_cols=81  Identities=14%  Similarity=0.089  Sum_probs=51.3

Q ss_pred             CCCCCcEEEeCCC--cCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           40 KLKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        40 ~~~~~~VLdlGcG--~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      .+++++||=.|++  .|+   ++..++..|++|++++.++ ..+.+.+.....+            ..++.+..+|..+.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~   71 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD------------RNDSIILPCDVTND   71 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS------------SCCCEEEECCCSSS
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC------------CCCceEEeCCCCCH
Confidence            3678999999986  554   5566667799999998643 4344333332221            12578888888766


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      +...       ...++.|+++.+.-+
T Consensus        72 ~~v~~~~~~~~~~~g~id~li~~Ag~   97 (266)
T 3oig_A           72 AEIETCFASIKEQVGVIHGIAHCIAF   97 (266)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHhCCeeEEEEcccc
Confidence            4321       112478998877544

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.31  E-value=0.18  Score=39.90  Aligned_cols=80  Identities=20%  Similarity=0.277  Sum_probs=56.8

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +++||.+|=-|++.|+   ++..++..|++|+.+|.+ +.++.+.+.+...+             .++.+..+|..+.+.
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g-------------~~~~~~~~Dvt~~~~   70 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG-------------KEVLGVKADVSKKKD   70 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHH
Confidence            4689999999998875   667777889999999984 46666666655443             367778888876643


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|++|.+.-+
T Consensus        71 v~~~~~~~~~~~G~iDiLVNNAGi   94 (254)
T 4fn4_A           71 VEEFVRRTFETYSRIDVLCNNAGI   94 (254)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCcc
Confidence            21       112589999987543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.09  E-value=0.062  Score=43.28  Aligned_cols=59  Identities=10%  Similarity=0.081  Sum_probs=40.0

Q ss_pred             CcEEEEEeeeCCCccccccCCCccEEEEeccccCCcC--------------------hHHHHHHHHHhcCCCcEEEEEEE
Q 029065          101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------LEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       101 ~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~--------------------~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..+.+.+.|+.+... ...+++||+|++++|++....                    +..++..+.++|+|+|.+++...
T Consensus        20 ~~~~i~~gD~~~~l~-~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           20 GVHRLHVGDAREVLA-SFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             -CEEEEESCHHHHHT-TSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCEEEECcHHHHHh-hCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            356777877754211 122468999999999864211                    24567788899999999988754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=93.04  E-value=0.12  Score=42.93  Aligned_cols=93  Identities=20%  Similarity=0.196  Sum_probs=57.3

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-  115 (199)
                      -+|.+||=+|+|. |..++.+|+ .|+ +|+++|.++ -++.+++    .+..              .+  .|....+. 
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--------------~v--i~~~~~~~~  240 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGAT--------------AT--VDPSAGDVV  240 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTCS--------------EE--ECTTSSCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCC--------------EE--ECCCCcCHH
Confidence            3578999999975 777777775 488 799999744 5555543    2311              11  12211110 


Q ss_pred             --c-c---ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 --I-K---AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 --~-~---~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                        . .   ...+.+|+|+-+-      .....+....+.|+++|.+++..
T Consensus       241 ~~i~~~~~~~~gg~Dvvid~~------G~~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          241 EAIAGPVGLVPGGVDVVIECA------GVAETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             HHHHSTTSSSTTCEEEEEECS------CCHHHHHHHHHHEEEEEEEEECS
T ss_pred             HHHHhhhhccCCCCCEEEECC------CCHHHHHHHHHHhccCCEEEEEe
Confidence              0 0   1124799988642      22467788888999999876654

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=92.86  E-value=0.14  Score=42.29  Aligned_cols=91  Identities=18%  Similarity=0.184  Sum_probs=57.3

Q ss_pred             CCCcEEEeC-CCc-ChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc--
Q 029065           42 KGKRVIELG-AGC-GVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--  114 (199)
Q Consensus        42 ~~~~VLdlG-cG~-G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~--  114 (199)
                      +|.+||=.| +|. |..++.+|+.  |++|+++|.+ +-++.+++    .+..            .+    +|.....  
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGad------------~v----i~~~~~~~~  230 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGAH------------HV----IDHSKPLAA  230 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTCS------------EE----ECTTSCHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCCC------------EE----EeCCCCHHH
Confidence            577999999 665 8889899974  7789999984 45555543    2311            11    1221110  


Q ss_pred             cc-cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          115 HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       115 ~~-~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      .. ....+.+|+|+-+      ..-...+....+.|+++|.+++.
T Consensus       231 ~v~~~~~~g~Dvvid~------~g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          231 EVAALGLGAPAFVFST------THTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             HHHTTCSCCEEEEEEC------SCHHHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHhcCCCceEEEEC------CCchhhHHHHHHHhcCCCEEEEE
Confidence            00 1123479988764      23345778888999999997765

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=92.59  E-value=0.44  Score=37.08  Aligned_cols=83  Identities=24%  Similarity=0.286  Sum_probs=54.5

Q ss_pred             CCCCCCcEEEeCC-CcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           39 SKLKGKRVIELGA-GCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        39 ~~~~~~~VLdlGc-G~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ..+++++||=.|+ |.|+   +...++..|++|+++|.+ +.++.+...+....            ..++.+..+|+.+.
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~   85 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG------------LGRVEAVVCDVTST   85 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC------------SSCEEEEECCTTCH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC------------CCceEEEEeCCCCH
Confidence            4568999999998 6765   556666779999999973 34454444443221            24688888888765


Q ss_pred             cccc-------ccCCCccEEEEecccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +...       ..-++.|++|.+.-+.
T Consensus        86 ~~v~~~~~~~~~~~g~id~li~~Ag~~  112 (266)
T 3o38_A           86 EAVDALITQTVEKAGRLDVLVNNAGLG  112 (266)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHhCCCcEEEECCCcC
Confidence            4221       1124789998876553

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=92.56  E-value=1.3  Score=36.79  Aligned_cols=104  Identities=16%  Similarity=0.078  Sum_probs=64.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      .+.+||-|+.+.|.+++.++..+. +...|.--....++.|+..|++.          ...+.+.  +..     .....
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~~~-~~~~ds~~~~~~~~~n~~~~~~~----------~~~~~~~--~~~-----~~~~~   99 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEHKP-YSIGDSYISELATRENLRLNGID----------ESSVKFL--DST-----ADYPQ   99 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGGCC-EEEESCHHHHHHHHHHHHHTTCC----------GGGSEEE--ETT-----SCCCS
T ss_pred             CCCCEEEECCCCCHHHHhhccCCc-eEEEhHHHHHHHHHHHHHHcCCC----------ccceEec--ccc-----ccccc
Confidence            456899999999999998875433 23346322445677899888752          1124432  211     12246


Q ss_pred             CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      .||+|+.--+ -........+..+...|.+++.+++....+..
T Consensus       100 ~~~~v~~~lp-k~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~  141 (375)
T 4dcm_A          100 QPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRIIAGAKARDI  141 (375)
T ss_dssp             SCSEEEEECC-SCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGC
T ss_pred             CCCEEEEEcC-CCHHHHHHHHHHHHhhCCCCCEEEEEecccch
Confidence            7999887422 22233445556666667899999888776543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=92.47  E-value=0.42  Score=37.62  Aligned_cols=85  Identities=18%  Similarity=0.244  Sum_probs=54.4

Q ss_pred             cCCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           36 FCPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        36 ~~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      +.+..++++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+....            ..++.+..+|+.
T Consensus        20 ~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~   87 (277)
T 4fc7_A           20 FCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT------------GRRCLPLSMDVR   87 (277)
T ss_dssp             BCTTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTT
T ss_pred             CCccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCcEEEEEcCCC
Confidence            45677899999999997764   455566679999999973 34443333332211            236778888887


Q ss_pred             CCcccc-------ccCCCccEEEEeccc
Q 029065          112 NEDHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       112 ~~~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      +.....       ..-++.|++|.+.-+
T Consensus        88 ~~~~v~~~~~~~~~~~g~id~lv~nAg~  115 (277)
T 4fc7_A           88 APPAVMAAVDQALKEFGRIDILINCAAG  115 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence            654221       112479999877543

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=92.26  E-value=0.36  Score=38.07  Aligned_cols=83  Identities=20%  Similarity=0.317  Sum_probs=52.6

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      +..++++++|=.|++.|+   ++..++..|++|+++|.++.++.....+...             ..++.+..+|+.+.+
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~~   92 (273)
T 3uf0_A           26 PFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADG-------------GGSAEAVVADLADLE   92 (273)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTT-------------TCEEEEEECCTTCHH
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHH
Confidence            456789999999997764   5556667799999998644333333333222             235777888887654


Q ss_pred             cccc------cCCCccEEEEecccc
Q 029065          115 HIKA------VAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~~~------~~~~fD~Ii~~~~~~  133 (199)
                      ....      ..++.|++|.+.-+.
T Consensus        93 ~v~~~~~~~~~~g~iD~lv~nAg~~  117 (273)
T 3uf0_A           93 GAANVAEELAATRRVDVLVNNAGII  117 (273)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHhcCCCcEEEECCCCC
Confidence            2211      115799999876554

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=92.16  E-value=1.3  Score=34.60  Aligned_cols=83  Identities=16%  Similarity=0.209  Sum_probs=49.9

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..+++++||=.|++.|+   +...++..|++|++++.+ +.++.+...+...+.           ...+.+..+|+.+.+
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~   96 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY-----------PGTLIPYRCDLSNEE   96 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------SSEEEEEECCTTCHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCC-----------CceEEEEEecCCCHH
Confidence            34678999999876553   344455669999999873 344444443333221           135677778876554


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ...       ...+++|++|.+..+
T Consensus        97 ~v~~~~~~~~~~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A           97 DILSMFSAIRSQHSGVDICINNAGL  121 (279)
T ss_dssp             HHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCCC
Confidence            221       011478999877554

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=92.13  E-value=0.047  Score=44.61  Aligned_cols=42  Identities=14%  Similarity=0.103  Sum_probs=30.4

Q ss_pred             CCCCCcEEEeCCCc--ChHHHHHHh-hCCeEEEeech-hHHHHHHH
Q 029065           40 KLKGKRVIELGAGC--GVAGFGMAL-LGCNVITTDQI-EVLPLLKR   81 (199)
Q Consensus        40 ~~~~~~VLdlGcG~--G~~sl~la~-~g~~v~~~D~~-~~l~~a~~   81 (199)
                      .-+|.+||=+|+|.  |...+.+++ .|++|+++|.+ +-++.+++
T Consensus       142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            34678999999974  666666665 59999999974 45565544

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=92.06  E-value=1.2  Score=35.05  Aligned_cols=81  Identities=21%  Similarity=0.295  Sum_probs=49.3

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-h-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      .++++++|=.|++.|+   +...++..|++|++++.+ + ..+.+...+...+             .++.+..+|..+.+
T Consensus        26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~   92 (283)
T 1g0o_A           26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG-------------SDAACVKANVGVVE   92 (283)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC-------------CCeEEEEcCCCCHH
Confidence            4678999988887664   445555679999999863 2 3444433333322             25677777876553


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ...       ..-++.|++|.+.-+.
T Consensus        93 ~~~~~~~~~~~~~g~iD~lv~~Ag~~  118 (283)
T 1g0o_A           93 DIVRMFEEAVKIFGKLDIVCSNSGVV  118 (283)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            221       0124789998875543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=92.00  E-value=1.6  Score=33.98  Aligned_cols=84  Identities=12%  Similarity=0.004  Sum_probs=54.3

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHH-hhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      +..++++++|=-|++.|+   ++..++..|++|+++|.+ +.++.+...+.. .+            ..++.+..+|..+
T Consensus         3 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~------------~~~~~~~~~Dv~~   70 (265)
T 3lf2_A            3 PYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFP------------GARLFASVCDVLD   70 (265)
T ss_dssp             CCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHST------------TCCEEEEECCTTC
T ss_pred             ccCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC------------CceEEEEeCCCCC
Confidence            345789999999998764   555666779999999974 455555444433 21            2247788888876


Q ss_pred             Ccccc-------ccCCCccEEEEecccc
Q 029065          113 EDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       113 ~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      .+...       ..-++.|++|.+.-+.
T Consensus        71 ~~~v~~~~~~~~~~~g~id~lvnnAg~~   98 (265)
T 3lf2_A           71 ALQVRAFAEACERTLGCASILVNNAGQG   98 (265)
T ss_dssp             HHHHHHHHHHHHHHHCSCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            54221       1125789998876543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.97  E-value=1.4  Score=34.96  Aligned_cols=81  Identities=17%  Similarity=0.107  Sum_probs=51.4

Q ss_pred             CCCCCCcEEEeCCC--cCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           39 SKLKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        39 ~~~~~~~VLdlGcG--~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      ..+++++||=.|++  .|+   ++..++..|++|++++.++ ..+.++......+              .+.+..+|+.+
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~Dv~d   92 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG--------------AFVAGHCDVAD   92 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT--------------CEEEEECCTTC
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--------------CceEEECCCCC
Confidence            45789999999986  343   5566667799999998754 3333333322221              46777888876


Q ss_pred             Ccccc-------ccCCCccEEEEecccc
Q 029065          113 EDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       113 ~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      .+...       ..-++.|++|.+.-+.
T Consensus        93 ~~~v~~~~~~~~~~~g~iD~lVnnAG~~  120 (293)
T 3grk_A           93 AASIDAVFETLEKKWGKLDFLVHAIGFS  120 (293)
T ss_dssp             HHHHHHHHHHHHHHTSCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEECCccC
Confidence            54221       1125799998875543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=91.92  E-value=0.37  Score=37.51  Aligned_cols=83  Identities=19%  Similarity=0.173  Sum_probs=54.3

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      +..++++++|=-|++.|+   ++..++..|++|+++|.+ +.++.+...+...             ..++.+..+|..+.
T Consensus         7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~   73 (256)
T 3gaf_A            7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA-------------GGKAIGLECNVTDE   73 (256)
T ss_dssp             TTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT-------------TCCEEEEECCTTCH
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEECCCCCH
Confidence            445789999999987764   555666779999999974 3555554444433             23677788888765


Q ss_pred             cccc-------ccCCCccEEEEecccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ....       ..-++.|+++.+.-+.
T Consensus        74 ~~v~~~~~~~~~~~g~id~lv~nAg~~  100 (256)
T 3gaf_A           74 QHREAVIKAALDQFGKITVLVNNAGGG  100 (256)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            4221       1124789998875543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=91.92  E-value=0.049  Score=44.90  Aligned_cols=39  Identities=26%  Similarity=0.217  Sum_probs=28.7

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeechh-HHHHHH
Q 029065           42 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQIE-VLPLLK   80 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~~-~l~~a~   80 (199)
                      +|.+||=+|+|. |...+.+|+ .|++|+++|.++ -++.++
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~  221 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEAL  221 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence            688999999875 777777775 489999999743 444443

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=91.89  E-value=1.6  Score=34.65  Aligned_cols=80  Identities=24%  Similarity=0.270  Sum_probs=51.6

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-------------hHHHHHHHHHHHhhhccccCCCCCCCCCcE
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGSI  103 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-------------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i  103 (199)
                      .++++++|=-|++.|+   ++..++..|++|+++|.+             +.++.+...+...             ..++
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~   91 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL-------------GRRI   91 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT-------------TCCE
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc-------------CCce
Confidence            4678999999998774   556666779999999853             2333333333332             2367


Q ss_pred             EEEEeeeCCCcccc-------ccCCCccEEEEeccc
Q 029065          104 QAVELDWGNEDHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       104 ~~~~~d~~~~~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      .+..+|..+.....       ..-++.|++|.+.-+
T Consensus        92 ~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A           92 IASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            88888887654221       112579999877554

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=91.88  E-value=0.029  Score=42.02  Aligned_cols=91  Identities=19%  Similarity=0.191  Sum_probs=52.9

Q ss_pred             CCCCcEEEeCCC--cChHHHHHH-hhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAG--CGVAGFGMA-LLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG--~G~~sl~la-~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      -+|++||-.|++  .|.....++ ..|++|+++|.++ .++.+++    .+.             ..   ..|..+.+..
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~-------------~~---~~d~~~~~~~   96 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV-------------EY---VGDSRSVDFA   96 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC-------------SE---EEETTCSTHH
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC-------------CE---EeeCCcHHHH
Confidence            467899999953  455444444 4599999999743 4443322    221             11   1233322110


Q ss_pred             ----c-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          117 ----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       117 ----~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                          . .....+|+++.+..       ...+....+.++++|.+++.
T Consensus        97 ~~~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A           97 DEILELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             HHHHHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEE
Confidence                0 11246999986531       25677888899999987654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=91.85  E-value=0.91  Score=36.12  Aligned_cols=82  Identities=13%  Similarity=0.117  Sum_probs=51.9

Q ss_pred             CCCCCCCcEEEeCCCc--Ch---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           38 PSKLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~--G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      ...+++++||=.|++.  |+   ++..++..|++|+++|.++ ..+.+.......+              .+.+..+|+.
T Consensus        25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~Dv~   90 (296)
T 3k31_A           25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG--------------VKLTVPCDVS   90 (296)
T ss_dssp             CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT--------------CCEEEECCTT
T ss_pred             hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--------------CeEEEEcCCC
Confidence            3457899999999854  53   5666667799999999743 4444443333322              3467778887


Q ss_pred             CCcccc-------ccCCCccEEEEecccc
Q 029065          112 NEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       112 ~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +.+...       ..-++.|++|.+.-+.
T Consensus        91 d~~~v~~~~~~~~~~~g~iD~lVnnAG~~  119 (296)
T 3k31_A           91 DAESVDNMFKVLAEEWGSLDFVVHAVAFS  119 (296)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            654221       1125789999876543

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=91.85  E-value=0.45  Score=37.26  Aligned_cols=84  Identities=20%  Similarity=0.247  Sum_probs=54.2

Q ss_pred             CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      ++..+++++||=.|++.|+   ++..++..|++|++++. +. ..+.....+...+             .++.+..+|..
T Consensus        23 ~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~   89 (271)
T 4iin_A           23 NAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKG-------------YKAAVIKFDAA   89 (271)
T ss_dssp             -CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTT
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-------------CceEEEECCCC
Confidence            4566789999999987764   45556667999999986 33 5454444444332             36778888887


Q ss_pred             CCcccc-------ccCCCccEEEEecccc
Q 029065          112 NEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       112 ~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +.....       ...++.|++|.+.-+.
T Consensus        90 ~~~~v~~~~~~~~~~~g~id~li~nAg~~  118 (271)
T 4iin_A           90 SESDFIEAIQTIVQSDGGLSYLVNNAGVV  118 (271)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence            654221       1124799998876553

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=91.82  E-value=0.91  Score=35.51  Aligned_cols=82  Identities=23%  Similarity=0.226  Sum_probs=52.6

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-------------hHHHHHHHHHHHhhhccccCCCCCCCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS  102 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-------------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  102 (199)
                      ..+++++||=-|++.|+   ++..++..|++|+++|.+             +.++.....+...             ..+
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~   75 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI-------------GSR   75 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH-------------TCC
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc-------------CCe
Confidence            45789999999987664   556666779999999853             2333333333332             236


Q ss_pred             EEEEEeeeCCCccccc-------cCCCccEEEEecccc
Q 029065          103 IQAVELDWGNEDHIKA-------VAPPFDYIIGTDVVY  133 (199)
Q Consensus       103 i~~~~~d~~~~~~~~~-------~~~~fD~Ii~~~~~~  133 (199)
                      +.+..+|+.+.+....       .-++.|++|.+.-+.
T Consensus        76 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  113 (278)
T 3sx2_A           76 IVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIA  113 (278)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            7888888876542211       124799999876554

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=91.82  E-value=0.13  Score=43.15  Aligned_cols=41  Identities=29%  Similarity=0.375  Sum_probs=30.4

Q ss_pred             CCCCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeech-hHHHHHH
Q 029065           40 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQI-EVLPLLK   80 (199)
Q Consensus        40 ~~~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~-~~l~~a~   80 (199)
                      .-+|.+||=+|+|. |..++.+|+ .|+ +|+++|.+ +-++.++
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~  255 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK  255 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            44678999999975 777777775 488 79999974 4555554

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=91.79  E-value=0.77  Score=35.57  Aligned_cols=82  Identities=13%  Similarity=0.009  Sum_probs=50.8

Q ss_pred             CCCCCCCcEEEeCCC--cCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           38 PSKLKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG--~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      +...++++||=.|++  .|+   ++..++..|++|++++.+. ..+.+++.....+              .+.+..+|..
T Consensus         9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~Dv~   74 (271)
T 3ek2_A            9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG--------------SELVFPCDVA   74 (271)
T ss_dssp             CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--------------CCCEEECCTT
T ss_pred             ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC--------------CcEEEECCCC
Confidence            456789999999976  553   4555566799999998743 3333333322221              3567778877


Q ss_pred             CCcccc-------ccCCCccEEEEecccc
Q 029065          112 NEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       112 ~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +.+...       ...++.|++|.+.-+.
T Consensus        75 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~  103 (271)
T 3ek2_A           75 DDAQIDALFASLKTHWDSLDGLVHSIGFA  103 (271)
T ss_dssp             CHHHHHHHHHHHHHHCSCEEEEEECCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence            654221       1125789998775543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.76  E-value=0.76  Score=35.69  Aligned_cols=78  Identities=17%  Similarity=0.224  Sum_probs=50.1

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+   +             .++.+..+|..+...
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~~~~~   68 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G-------------PRVHALRSDIADLNE   68 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G-------------GGEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-------------CcceEEEccCCCHHH
Confidence            4678999999987764   555666779999999974 3444333322   1             156777788765542


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ...++.|+++.+.-+.
T Consensus        69 v~~~~~~~~~~~g~id~lv~nAg~~   93 (255)
T 4eso_A           69 IAVLGAAAGQTLGAIDLLHINAGVS   93 (255)
T ss_dssp             HHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCC
Confidence            21       1124789998775443

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=91.74  E-value=0.058  Score=44.21  Aligned_cols=91  Identities=22%  Similarity=0.199  Sum_probs=54.6

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc--
Q 029065           42 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--  115 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--  115 (199)
                      +|.+||-+|+|. |...+.+++ .|+ +|+++|.+ +-++.+++    .+..              .+  +|....+.  
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga~--------------~~--~~~~~~~~~~  226 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGAD--------------YV--INPFEEDVVK  226 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTCS--------------EE--ECTTTSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC--------------EE--ECCCCcCHHH
Confidence            788999999964 776767665 588 89999974 35555542    2210              11  22221110  


Q ss_pred             -cc-c-cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          116 -IK-A-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       116 -~~-~-~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                       .. . ....+|+|+-+-.      ....+....+.++++|.+++.
T Consensus       227 ~v~~~~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          227 EVMDITDGNGVDVFLEFSG------APKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             HHHHHTTTSCEEEEEECSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHcCCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence             00 0 1236999886522      245677778888888876554

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=91.71  E-value=0.17  Score=41.35  Aligned_cols=90  Identities=23%  Similarity=0.318  Sum_probs=54.8

Q ss_pred             CCCcEEEe-CCCc-ChHHHHHHh-hCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC--cc
Q 029065           42 KGKRVIEL-GAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE--DH  115 (199)
Q Consensus        42 ~~~~VLdl-GcG~-G~~sl~la~-~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~  115 (199)
                      +|.+||=. |+|. |...+.+++ .|++|+++|. ++-++.+++    .+..            .+    ++..+.  ..
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~------------~v----i~~~~~~~~~  209 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK----MGAD------------IV----LNHKESLLNQ  209 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH----HTCS------------EE----ECTTSCHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc------------EE----EECCccHHHH
Confidence            58899999 4654 777777775 4899999998 445555544    2211            11    121111  00


Q ss_pred             c-cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEE
Q 029065          116 I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       116 ~-~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      . ....+.+|+|+-+-      .-...+....+.|+++|.++.
T Consensus       210 ~~~~~~~g~Dvv~d~~------g~~~~~~~~~~~l~~~G~iv~  246 (346)
T 3fbg_A          210 FKTQGIELVDYVFCTF------NTDMYYDDMIQLVKPRGHIAT  246 (346)
T ss_dssp             HHHHTCCCEEEEEESS------CHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHhCCCCccEEEECC------CchHHHHHHHHHhccCCEEEE
Confidence            0 11234699888642      234567888889999998754

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.60  E-value=1.2  Score=35.38  Aligned_cols=81  Identities=17%  Similarity=0.139  Sum_probs=51.1

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-h--HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E--VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      ..++++++|=.|++.|+   ++..++..|++|+++|.+ +  ..+.+...+...             ..++.+..+|+.+
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d  111 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC-------------GRKAVLLPGDLSD  111 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT-------------TCCEEECCCCTTS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc-------------CCcEEEEEecCCC
Confidence            45689999999987764   455566679999999863 2  333333333333             2356777778765


Q ss_pred             Ccccc-------ccCCCccEEEEeccc
Q 029065          113 EDHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       113 ~~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      .+...       ..-++.|+++.+.-+
T Consensus       112 ~~~v~~~~~~~~~~~g~iD~lv~nAg~  138 (294)
T 3r3s_A          112 ESFARSLVHKAREALGGLDILALVAGK  138 (294)
T ss_dssp             HHHHHHHHHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            53211       112578999877654

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=91.58  E-value=0.37  Score=39.67  Aligned_cols=92  Identities=12%  Similarity=0.086  Sum_probs=56.3

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC--Cc
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--ED  114 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~  114 (199)
                      -+|.+||=+|+|. |...+.+|+ .|+ +|+++|. ++-++.+++    .+..              .+  +|..+  .+
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa~--------------~v--i~~~~~~~~  248 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGAT--------------EC--INPQDFSKP  248 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTCS--------------EE--ECGGGCSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc--------------eE--ecccccccc
Confidence            3578999999875 777777775 488 6999997 445566543    2211              11  22221  00


Q ss_pred             ---cc-cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCC-cEEEEE
Q 029065          115 ---HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLG  158 (199)
Q Consensus       115 ---~~-~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~-g~i~i~  158 (199)
                         .. ....+.+|+|+-.-      .....+....++++++ |.+++.
T Consensus       249 ~~~~v~~~~~~g~D~vid~~------g~~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          249 IQEVLIEMTDGGVDYSFECI------GNVKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             HHHHHHHHTTSCBSEEEECS------CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHHHHHhCCCCCEEEECC------CcHHHHHHHHHhhccCCcEEEEE
Confidence               00 11124799988542      2245678888999999 987654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=91.53  E-value=0.38  Score=37.07  Aligned_cols=81  Identities=21%  Similarity=0.309  Sum_probs=52.8

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..+++++||=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...             ..++.+..+|+.+..
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~   71 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD-------------GGTAISVAVDVSDPE   71 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCEEEEEECCTTSHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHH
Confidence            34678999999987664   455556679999999974 4555555544433             235777888887654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ...       ...++.|++|.+.-+
T Consensus        72 ~~~~~~~~~~~~~g~id~li~~Ag~   96 (253)
T 3qiv_A           72 SAKAMADRTLAEFGGIDYLVNNAAI   96 (253)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCc
Confidence            221       112479999987654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=91.51  E-value=0.32  Score=38.52  Aligned_cols=83  Identities=22%  Similarity=0.294  Sum_probs=49.2

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ...++|+++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...+            ...+.+..+|+.+.
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~d~   95 (281)
T 4dry_A           28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT------------GNIVRAVVCDVGDP   95 (281)
T ss_dssp             ------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTTCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------------CCeEEEEEcCCCCH
Confidence            345689999999987664   445555679999999973 45555544443332            22457778888765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      +...       ..-++.|++|.+.-+
T Consensus        96 ~~v~~~~~~~~~~~g~iD~lvnnAG~  121 (281)
T 4dry_A           96 DQVAALFAAVRAEFARLDLLVNNAGS  121 (281)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            4221       112578999887654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=91.47  E-value=0.084  Score=43.78  Aligned_cols=92  Identities=15%  Similarity=0.087  Sum_probs=56.5

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC--Cc
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--ED  114 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--~~  114 (199)
                      -+|.+||=+|+|. |+.++.+|+ .|+ +|+++|.+ +-++.+++    .+..              .  .+|..+  .+
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~--------------~--vi~~~~~~~~  251 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN--------------E--FVNPKDHDKP  251 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC--------------E--EECGGGCSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc--------------E--EEccccCchh
Confidence            3578999999975 777777775 488 69999974 45555532    2211              1  122221  11


Q ss_pred             c----ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCC-cEEEEE
Q 029065          115 H----IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLG  158 (199)
Q Consensus       115 ~----~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~-g~i~i~  158 (199)
                      .    .....+.+|+|+-.-      .-...+....+.++++ |.+++.
T Consensus       252 ~~~~i~~~~~gg~D~vid~~------g~~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          252 IQEVIVDLTDGGVDYSFECI------GNVSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             HHHHHHHHTTSCBSEEEECS------CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHHHHhcCCCCCEEEECC------CCHHHHHHHHHHhhccCCEEEEE
Confidence            0    011134799988642      2346778888899996 887654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=91.47  E-value=0.44  Score=37.67  Aligned_cols=82  Identities=13%  Similarity=0.058  Sum_probs=50.9

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC-c
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  114 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~  114 (199)
                      ..++++||=.|++.|+   ++..++..|++|++++.+ +.++.+...+...+            ..++.+..+|+.+. .
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~~~   76 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN------------HENVVFHQLDVTDPIA   76 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------------CCSEEEEECCTTSCHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------------CCceEEEEccCCCcHH
Confidence            3568899988987664   445555679999999974 34444444443322            24688888998776 3


Q ss_pred             cc-------cccCCCccEEEEecccc
Q 029065          115 HI-------KAVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~-------~~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ....++.|++|.+.-+.
T Consensus        77 ~v~~~~~~~~~~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           77 TMSSLADFIKTHFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCccc
Confidence            21       11125799999886554

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=91.46  E-value=0.79  Score=35.94  Aligned_cols=81  Identities=15%  Similarity=0.149  Sum_probs=50.0

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-h-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..+++++|=-|++.|+   ++..++..|++|++++. + +.++.+...+...+             .++.+..+|+.+.+
T Consensus        24 ~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~   90 (267)
T 3u5t_A           24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG-------------GKALTAQADVSDPA   90 (267)
T ss_dssp             ---CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-------------CeEEEEEcCCCCHH
Confidence            4578999999987764   55666677999988854 3 34444444443332             35777788887654


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ...       ..-++.|++|.+.-+.
T Consensus        91 ~v~~~~~~~~~~~g~iD~lvnnAG~~  116 (267)
T 3u5t_A           91 AVRRLFATAEEAFGGVDVLVNNAGIM  116 (267)
T ss_dssp             HHHHHHHHHHHHHSCEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            221       1124799998876543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=91.44  E-value=1  Score=36.35  Aligned_cols=82  Identities=21%  Similarity=0.241  Sum_probs=53.3

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=.|++.|+   +...++..|++|++++.+ +.++.+...+...+.           ...+.+..+|+.+...
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~~~~~   73 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGS-----------GPEVMGVQLDVASREG   73 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEECCTTCHHH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCeEEEEECCCCCHHH
Confidence            4678899999998775   445555679999999974 455555554443321           1257888888876542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|++|.+..+
T Consensus        74 v~~~~~~~~~~~g~id~lv~nAg~   97 (319)
T 3ioy_A           74 FKMAADEVEARFGPVSILCNNAGV   97 (319)
T ss_dssp             HHHHHHHHHHHTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCc
Confidence            21       112578999887654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=91.44  E-value=0.56  Score=36.58  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=53.9

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...+             .++.+..+|+.+.+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~   74 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG-------------RRALSVGTDITDDAQ   74 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHH
Confidence            4678999999998774   556666779999999974 45555555444332             367888888876542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|++|.+.-.
T Consensus        75 v~~~~~~~~~~~g~id~lv~nAg~   98 (264)
T 3ucx_A           75 VAHLVDETMKAYGRVDVVINNAFR   98 (264)
T ss_dssp             HHHHHHHHHHHTSCCSEEEECCCS
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCC
Confidence            21       112579999987643

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=91.42  E-value=1  Score=35.14  Aligned_cols=82  Identities=20%  Similarity=0.148  Sum_probs=50.9

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-h---hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I---EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~---~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      ..++++++|=-|++.|+   ++..++..|++|++++. .   +.++.+...+...             ..++.+..+|+.
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~   73 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ-------------GAKVALYQSDLS   73 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT-------------TCEEEEEECCCC
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc-------------CCcEEEEECCCC
Confidence            35678999999988764   44555567999999864 2   2333333333222             236788888887


Q ss_pred             CCcccc-------ccCCCccEEEEecccc
Q 029065          112 NEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       112 ~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +.+...       ..-++.|++|.+.-+.
T Consensus        74 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~  102 (262)
T 3ksu_A           74 NEEEVAKLFDFAEKEFGKVDIAINTVGKV  102 (262)
T ss_dssp             SHHHHHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            654221       1125789998876543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=91.41  E-value=0.082  Score=43.75  Aligned_cols=39  Identities=21%  Similarity=0.205  Sum_probs=28.1

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeech-hHHHHHH
Q 029065           42 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI-EVLPLLK   80 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~-~~l~~a~   80 (199)
                      +|.+||=+|+|. |...+.+|+ .|++|+++|.+ +-++.++
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~  228 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEAL  228 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            678999999864 666666665 48999999974 3444443

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=91.34  E-value=0.76  Score=35.90  Aligned_cols=82  Identities=18%  Similarity=0.255  Sum_probs=53.6

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=-|++.|+   ++..++..|++|+++|.+ +.++.+...+....            ..++.+..+|..+.+.
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~~~~~   84 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF------------GTDVHTVAIDLAEPDA   84 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTSTTH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCcEEEEEecCCCHHH
Confidence            4678999999987764   555666779999999973 35555444443311            2367888888876653


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|++|.+.-+.
T Consensus        85 v~~~~~~~~~~~g~id~lv~nAg~~  109 (266)
T 4egf_A           85 PAELARRAAEAFGGLDVLVNNAGIS  109 (266)
T ss_dssp             HHHHHHHHHHHHTSCSEEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcC
Confidence            21       1124799998875543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=91.28  E-value=0.19  Score=40.94  Aligned_cols=94  Identities=16%  Similarity=0.133  Sum_probs=57.7

Q ss_pred             CCCCCcEEEeCCCc-ChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-
Q 029065           40 KLKGKRVIELGAGC-GVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-  114 (199)
Q Consensus        40 ~~~~~~VLdlGcG~-G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-  114 (199)
                      .-+|.+||=+|+|. |..++.+|+.  +++|+++|.++ -++.+++    .+.            +.  +  .+..... 
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa------------~~--~--i~~~~~~~  228 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGA------------DA--A--VKSGAGAA  228 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTC------------SE--E--EECSTTHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC------------CE--E--EcCCCcHH
Confidence            44678999999976 8888888864  67899999744 5555533    231            11  1  1221110 


Q ss_pred             -cc-c-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          115 -HI-K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       115 -~~-~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                       .. . .....+|+|+-+-      --...+....+.|+++|.+.+..
T Consensus       229 ~~v~~~t~g~g~d~v~d~~------G~~~~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          229 DAIRELTGGQGATAVFDFV------GAQSTIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             HHHHHHHGGGCEEEEEESS------CCHHHHHHHHHHEEEEEEEEECS
T ss_pred             HHHHHHhCCCCCeEEEECC------CCHHHHHHHHHHHhcCCEEEEEC
Confidence             00 0 1123799888642      23457888888999999876653

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=91.13  E-value=0.41  Score=37.79  Aligned_cols=82  Identities=18%  Similarity=0.285  Sum_probs=53.6

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..++++++|=.|++.|+   ++..++..|++|+++|. .+.++.+...+...+             .++.+..+|..+.+
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~d~~   94 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG-------------GKALPIRCDVTQPD   94 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT-------------CCCEEEECCTTCHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEEcCCCCHH
Confidence            45789999999987764   55566677999999997 345555544444332             35677778887654


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ...       ..-++.|++|.+.-+.
T Consensus        95 ~v~~~~~~~~~~~g~iD~lvnnAg~~  120 (276)
T 3r1i_A           95 QVRGMLDQMTGELGGIDIAVCNAGIV  120 (276)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            221       1124799999876553

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=91.11  E-value=0.057  Score=43.96  Aligned_cols=92  Identities=18%  Similarity=0.143  Sum_probs=54.9

Q ss_pred             CCCCCcEEEeCC-C-cChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGc-G-~G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .-+|.+||=+|+ | .|...+.+++ .|++|+++|.+ +-++.+++    .+.             . .  ..|....+.
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga-------------~-~--~~~~~~~~~  205 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE----YGA-------------E-Y--LINASKEDI  205 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC-------------S-E--EEETTTSCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC-------------c-E--EEeCCCchH
Confidence            346889999994 3 4777776665 58999999984 45554433    221             1 1  122222211


Q ss_pred             c----c-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          116 I----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       116 ~----~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      .    . .....+|+|+-+-.       ...+....+.|+++|.+++.
T Consensus       206 ~~~~~~~~~~~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          206 LRQVLKFTNGKGVDASFDSVG-------KDTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             HHHHHHHTTTSCEEEEEECCG-------GGGHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHhCCCCceEEEECCC-------hHHHHHHHHHhccCCEEEEE
Confidence            0    0 11346999886532       14567777889999987664

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=91.05  E-value=0.62  Score=37.22  Aligned_cols=81  Identities=14%  Similarity=0.165  Sum_probs=53.6

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...+             ..+.+..+|..+.+.
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~   94 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG-------------FDAHGVVCDVRHLDE   94 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEEccCCCHHH
Confidence            4678999999998764   455566679999999974 45555555444332             367788888876542


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ...++.|++|.+.-+.
T Consensus        95 v~~~~~~~~~~~g~id~lvnnAg~~  119 (301)
T 3tjr_A           95 MVRLADEAFRLLGGVDVVFSNAGIV  119 (301)
T ss_dssp             HHHHHHHHHHHHSSCSEEEECCCCC
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCcC
Confidence            21       1124799998875543

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=90.96  E-value=0.061  Score=43.66  Aligned_cols=92  Identities=17%  Similarity=0.111  Sum_probs=54.9

Q ss_pred             CCCCcEEEeC-CC-cChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELG-AG-CGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlG-cG-~G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      -+|.+||=.| +| .|...+.+++ .|++|+++|.+ +-++.+++    .+.             . .  .+|..+.+..
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga-------------~-~--~~~~~~~~~~  198 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA----LGA-------------W-E--TIDYSHEDVA  198 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTC-------------S-E--EEETTTSCHH
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC-------------C-E--EEeCCCccHH
Confidence            4578999999 44 4777777765 59999999974 45555543    221             1 1  1222222110


Q ss_pred             ----c-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 ----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ----~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                          . .....+|+|+-+-.     .  ..+....+.++++|.+++..
T Consensus       199 ~~~~~~~~~~g~Dvvid~~g-----~--~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          199 KRVLELTDGKKCPVVYDGVG-----Q--DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             HHHHHHTTTCCEEEEEESSC-----G--GGHHHHHTTEEEEEEEEECC
T ss_pred             HHHHHHhCCCCceEEEECCC-----h--HHHHHHHHHhcCCCEEEEEe
Confidence                0 11247999886532     1  45667778889999876653

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=90.86  E-value=0.9  Score=36.17  Aligned_cols=77  Identities=22%  Similarity=0.245  Sum_probs=51.5

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||.+|=-|++.|+   ++..++..|++|+++|.+ +.++.+.+.+   +             .+.....+|..+...
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g-------------~~~~~~~~Dv~~~~~   89 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G-------------GGAVGIQADSANLAE   89 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C-------------TTCEEEECCTTCHHH
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C-------------CCeEEEEecCCCHHH
Confidence            4789999999998874   667777789999999984 4555443332   1             134566778766542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|++|.+.-+
T Consensus        90 v~~~~~~~~~~~G~iDiLVNNAG~  113 (273)
T 4fgs_A           90 LDRLYEKVKAEAGRIDVLFVNAGG  113 (273)
T ss_dssp             HHHHHHHHHHHHSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            21       112578999877544

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=90.85  E-value=0.48  Score=36.77  Aligned_cols=79  Identities=28%  Similarity=0.254  Sum_probs=53.3

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...+             .++.+..+|..+.+..
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~v   71 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG-------------GRIVARSLDARNEDEV   71 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT-------------CEEEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEECcCCCHHHH
Confidence            568899999998774   555666679999999973 45555555544432             3678888888765422


Q ss_pred             c-------ccCCCccEEEEecccc
Q 029065          117 K-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~~  133 (199)
                      .       .. ++.|++|.+.-+.
T Consensus        72 ~~~~~~~~~~-g~id~lv~nAg~~   94 (252)
T 3h7a_A           72 TAFLNAADAH-APLEVTIFNVGAN   94 (252)
T ss_dssp             HHHHHHHHHH-SCEEEEEECCCCC
T ss_pred             HHHHHHHHhh-CCceEEEECCCcC
Confidence            1       12 5789998876553

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=90.75  E-value=0.5  Score=36.87  Aligned_cols=83  Identities=17%  Similarity=0.210  Sum_probs=53.4

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..++++++|=-|++.|+   ++..++..|++|+++|.+ +.++.+...+...+            ..++.+..+|..+..
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~~~~   73 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG------------SGKVIGVQTDVSDRA   73 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS------------SSCEEEEECCTTSHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC------------CCcEEEEEcCCCCHH
Confidence            35678999999987664   455566679999999974 35554444443322            236788888887654


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ...       ..-++.|++|.+.-+.
T Consensus        74 ~v~~~~~~~~~~~g~id~lvnnAg~~   99 (262)
T 3pk0_A           74 QCDALAGRAVEEFGGIDVVCANAGVF   99 (262)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            221       1124799998876543

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=90.57  E-value=1  Score=36.12  Aligned_cols=87  Identities=17%  Similarity=0.119  Sum_probs=53.0

Q ss_pred             cEEEeCC-C-cChHHHHHHh-hCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-cccc
Q 029065           45 RVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV  119 (199)
Q Consensus        45 ~VLdlGc-G-~G~~sl~la~-~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~~~~  119 (199)
                      +||=.|+ | .|...+.+|+ .|++|+++|. ++-++.+++    .+..            . .   +|..+... ....
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~------------~-v---i~~~~~~~~~~~~  208 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS----LGAN------------R-I---LSRDEFAESRPLE  208 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH----HTCS------------E-E---EEGGGSSCCCSSC
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCC------------E-E---EecCCHHHHHhhc
Confidence            4999998 4 3888888885 4899999997 445566644    2211            1 1   11111111 1112


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      .+.+|+|+-+-      . ...+....+.++++|.+++.
T Consensus       209 ~~~~d~v~d~~------g-~~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          209 KQLWAGAIDTV------G-DKVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             CCCEEEEEESS------C-HHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCccEEEECC------C-cHHHHHHHHHHhcCCEEEEE
Confidence            35789877532      1 23788888899999987665

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=90.56  E-value=1.7  Score=34.18  Aligned_cols=79  Identities=25%  Similarity=0.334  Sum_probs=50.2

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..+++++||=.|++.|+   ++..++..|++|+++|.+ +.++.+...+   +             ..+.+..+|..+.+
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~d~~   88 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---G-------------CGAAACRVDVSDEQ   88 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C-------------SSCEEEECCTTCHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C-------------CcceEEEecCCCHH
Confidence            45789999999988774   556666779999999974 3444333322   1             24577778887654


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ...       ..-++.|++|.+.-+.
T Consensus        89 ~v~~~~~~~~~~~g~iD~lvnnAg~~  114 (277)
T 3gvc_A           89 QIIAMVDACVAAFGGVDKLVANAGVV  114 (277)
T ss_dssp             HHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            221       1124789998876553

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=90.44  E-value=0.47  Score=38.21  Aligned_cols=91  Identities=23%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             CCCCcEEEeC-CCc-ChHHHHHHh-hCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELG-AGC-GVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlG-cG~-G~~sl~la~-~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      -+|.+||=+| +|. |...+.+|+ .|++|++++.++-++.+++    .+..              .  .+|....+...
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~----lGa~--------------~--~i~~~~~~~~~  210 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKA----LGAE--------------Q--CINYHEEDFLL  210 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH----HTCS--------------E--EEETTTSCHHH
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHH----cCCC--------------E--EEeCCCcchhh
Confidence            4678999997 664 888888886 4899998875443444432    2321              1  12332222011


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      .....+|+|+-+-      .-.. +....+.++++|.++..
T Consensus       211 ~~~~g~D~v~d~~------g~~~-~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          211 AISTPVDAVIDLV------GGDV-GIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             HCCSCEEEEEESS------CHHH-HHHHGGGEEEEEEEEEC
T ss_pred             hhccCCCEEEECC------CcHH-HHHHHHhccCCCEEEEe
Confidence            1124689887542      1223 36777888999987654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=90.44  E-value=0.42  Score=37.14  Aligned_cols=80  Identities=29%  Similarity=0.316  Sum_probs=51.5

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...             ..++.+..+|+.+.+.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~   69 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF-------------PGQILTVQMDVRNTDD   69 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS-------------TTCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHH
Confidence            4678999999987664   455566679999999974 3555444433222             2367888888876542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|++|.+.-+
T Consensus        70 v~~~~~~~~~~~g~id~lv~nAg~   93 (257)
T 3imf_A           70 IQKMIEQIDEKFGRIDILINNAAG   93 (257)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            21       112478999877544

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=90.37  E-value=0.81  Score=35.57  Aligned_cols=80  Identities=18%  Similarity=0.178  Sum_probs=50.2

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEe-ech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITT-DQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~-D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      .++++++|=-|++.|+   ++..++..|++|+++ +.+ +..+.+...+...             ..++.+..+|..+.+
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~   71 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL-------------GRSALAIKADLTNAA   71 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT-------------TSCCEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHH
Confidence            4678999999988764   555666779999888 443 3444444433332             235677788887654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ...       ..-++.|+++.+.-.
T Consensus        72 ~v~~~~~~~~~~~g~id~lv~nAg~   96 (259)
T 3edm_A           72 EVEAAISAAADKFGEIHGLVHVAGG   96 (259)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCc
Confidence            221       112478999877543

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=90.30  E-value=1.7  Score=34.12  Aligned_cols=81  Identities=11%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-h-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC--
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--  112 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~--  112 (199)
                      .++++++|=.|++.|+   ++..++..|++|++++. . +.++.+...+....            ..++.+..+|+.+  
T Consensus        20 ~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~~~~   87 (288)
T 2x9g_A           20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER------------SNTAVVCQADLTNSN   87 (288)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHS------------TTCEEEEECCCSCST
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhc------------CCceEEEEeecCCcc
Confidence            3578899999987664   44555667999999986 3 44444433332110            2357788888876  


Q ss_pred             --Ccccc-------ccCCCccEEEEeccc
Q 029065          113 --EDHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       113 --~~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                        .....       ..-++.|++|.+.-+
T Consensus        88 ~~~~~v~~~~~~~~~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A           88 VLPASCEEIINSCFRAFGRCDVLVNNASA  116 (288)
T ss_dssp             THHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence              32111       012478999887554

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=90.28  E-value=1.3  Score=33.64  Aligned_cols=80  Identities=13%  Similarity=0.097  Sum_probs=49.4

Q ss_pred             CCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      +++++|=.|++.|+   ++..++..|++|++++.+ +-++.+...+....            ..++.+..+|..+.+...
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~~v~   68 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ------------GVEVFYHHLDVSKAESVE   68 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCeEEEEEeccCCHHHHH
Confidence            36788888886653   445555679999999873 34454444443221            236788888887654321


Q ss_pred             cc-------CCCccEEEEecccc
Q 029065          118 AV-------APPFDYIIGTDVVY  133 (199)
Q Consensus       118 ~~-------~~~fD~Ii~~~~~~  133 (199)
                      ..       -++.|++|.+.-+.
T Consensus        69 ~~~~~~~~~~g~id~li~~Ag~~   91 (235)
T 3l77_A           69 EFSKKVLERFGDVDVVVANAGLG   91 (235)
T ss_dssp             HHCC-HHHHHSSCSEEEECCCCC
T ss_pred             HHHHHHHHhcCCCCEEEECCccc
Confidence            11       14789998876553

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=90.24  E-value=0.59  Score=35.81  Aligned_cols=84  Identities=17%  Similarity=0.236  Sum_probs=51.8

Q ss_pred             CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeee--
Q 029065           37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW--  110 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~--  110 (199)
                      ++..+++++||=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...+            .....+...|.  
T Consensus         8 ~~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~d~d~   75 (247)
T 3i1j_A            8 HPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG------------QPQPLIIALNLEN   75 (247)
T ss_dssp             CTTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------------SCCCEEEECCTTT
T ss_pred             CCccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC------------CCCceEEEecccc
Confidence            4567889999999987664   455556679999999974 35555555544432            12455666665  


Q ss_pred             CCCccc-------cccCCCccEEEEeccc
Q 029065          111 GNEDHI-------KAVAPPFDYIIGTDVV  132 (199)
Q Consensus       111 ~~~~~~-------~~~~~~fD~Ii~~~~~  132 (199)
                      .+....       ...-++.|++|.+.-+
T Consensus        76 ~~~~~~~~~~~~~~~~~g~id~lv~nAg~  104 (247)
T 3i1j_A           76 ATAQQYRELAARVEHEFGRLDGLLHNASI  104 (247)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             CCHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence            322111       0112478999987654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=90.22  E-value=0.71  Score=36.38  Aligned_cols=80  Identities=18%  Similarity=0.238  Sum_probs=52.4

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=-|++.|+   ++..++..|++|+++|.+ +.++.+...+...             ..++.+..+|..+...
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~   96 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS-------------GGTAQELAGDLSEAGA   96 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT-------------TCCEEEEECCTTSTTH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-------------CCeEEEEEecCCCHHH
Confidence            4679999999987764   555566679999999973 3444444444333             2367788888876542


Q ss_pred             cc------ccCCCccEEEEeccc
Q 029065          116 IK------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~------~~~~~fD~Ii~~~~~  132 (199)
                      ..      ...++.|++|.+.-+
T Consensus        97 ~~~~~~~~~~~g~iD~lvnnAg~  119 (275)
T 4imr_A           97 GTDLIERAEAIAPVDILVINASA  119 (275)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCCC
Confidence            21      001579999887654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=90.20  E-value=0.035  Score=45.45  Aligned_cols=90  Identities=16%  Similarity=0.161  Sum_probs=53.5

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc--
Q 029065           42 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--  115 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--  115 (199)
                      +|.+||-+|+|. |...+.+|+ .|+ +|+++|.++ -++.+++.   ..                .  .+|..+.+.  
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l---a~----------------~--v~~~~~~~~~~  222 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY---AD----------------R--LVNPLEEDLLE  222 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT---CS----------------E--EECTTTSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh---HH----------------h--ccCcCccCHHH
Confidence            788999999964 777777775 588 899999743 33333221   00                0  122221110  


Q ss_pred             -c-cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          116 -I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       116 -~-~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                       . ......+|+|+-.-.      ....++...+.++++|.+++.
T Consensus       223 ~~~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          223 VVRRVTGSGVEVLLEFSG------NEAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             HHHHHHSSCEEEEEECSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHhcCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence             0 001346999886421      235677788888999886654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.17  E-value=2.3  Score=30.98  Aligned_cols=39  Identities=21%  Similarity=0.118  Sum_probs=26.1

Q ss_pred             CCCCCcEEEeCCCc-Ch-HHHHHHhh-CCeEEEeechh-HHHH
Q 029065           40 KLKGKRVIELGAGC-GV-AGFGMALL-GCNVITTDQIE-VLPL   78 (199)
Q Consensus        40 ~~~~~~VLdlGcG~-G~-~sl~la~~-g~~v~~~D~~~-~l~~   78 (199)
                      ...+.+|+=+|+|. |. ++..+... |.+|+++|.++ .++.
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~   78 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQ   78 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHH
Confidence            34567899999874 43 44455566 88999999843 4333

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=90.16  E-value=0.76  Score=35.42  Aligned_cols=80  Identities=20%  Similarity=0.308  Sum_probs=50.5

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=.|++.|+   ++..++..|++|++++.+ +.++.+...+...+             .++.+..+|..+.+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~~~~~   70 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG-------------AKVHVLELDVADRQG   70 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEECCCCCHHH
Confidence            4678899999987664   445556679999999873 34444444433322             256777888876542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|++|.+.-+
T Consensus        71 ~~~~~~~~~~~~g~id~lv~nAg~   94 (247)
T 2jah_A           71 VDAAVASTVEALGGLDILVNNAGI   94 (247)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            21       012479999887544

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=90.15  E-value=0.45  Score=37.54  Aligned_cols=81  Identities=22%  Similarity=0.281  Sum_probs=49.5

Q ss_pred             CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      .+..+++++||=.|++.|+   +...++..|++|++++.+ +.++.+...+...+            ...+.+..+|..+
T Consensus        22 ~~~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dl~d   89 (286)
T 1xu9_A           22 RPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG------------AASAHYIAGTMED   89 (286)
T ss_dssp             CGGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT------------CSEEEEEECCTTC
T ss_pred             ChhhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC------------CCceEEEeCCCCC
Confidence            4455778999988876553   344455669999999973 34444444333322            1256777888775


Q ss_pred             Ccccc-------ccCCCccEEEEe
Q 029065          113 EDHIK-------AVAPPFDYIIGT  129 (199)
Q Consensus       113 ~~~~~-------~~~~~fD~Ii~~  129 (199)
                      .+...       ...++.|++|.+
T Consensus        90 ~~~v~~~~~~~~~~~g~iD~li~n  113 (286)
T 1xu9_A           90 MTFAEQFVAQAGKLMGGLDMLILN  113 (286)
T ss_dssp             HHHHHHHHHHHHHHHTSCSEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEC
Confidence            43211       012479999876

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=90.13  E-value=0.71  Score=35.72  Aligned_cols=83  Identities=20%  Similarity=0.209  Sum_probs=51.9

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeee--C
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW--G  111 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~--~  111 (199)
                      +..+++++||=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...+            ...+.+..+|.  .
T Consensus         7 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~   74 (252)
T 3f1l_A            7 QDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET------------GRQPQWFILDLLTC   74 (252)
T ss_dssp             TTTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------SCCCEEEECCTTTC
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCCceEEEEecccC
Confidence            345789999999987764   455566679999999974 35555444443332            22456677777  3


Q ss_pred             CCccc-------cccCCCccEEEEeccc
Q 029065          112 NEDHI-------KAVAPPFDYIIGTDVV  132 (199)
Q Consensus       112 ~~~~~-------~~~~~~fD~Ii~~~~~  132 (199)
                      +....       ...-++.|++|.+.-+
T Consensus        75 ~~~~~~~~~~~~~~~~g~id~lv~nAg~  102 (252)
T 3f1l_A           75 TSENCQQLAQRIAVNYPRLDGVLHNAGL  102 (252)
T ss_dssp             CHHHHHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence            33211       1113579999987654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=90.13  E-value=0.91  Score=35.54  Aligned_cols=80  Identities=18%  Similarity=0.126  Sum_probs=50.6

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...+             ..+.+..+|..+.+.
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~   84 (273)
T 1ae1_A           18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG-------------LNVEGSVCDLLSRTE   84 (273)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEECCCCCHHH
Confidence            3678999999987653   445555679999999974 34444433333222             256777788866542


Q ss_pred             ccc-------c-CCCccEEEEeccc
Q 029065          116 IKA-------V-APPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~~-------~-~~~fD~Ii~~~~~  132 (199)
                      ...       . .++.|++|.+.-+
T Consensus        85 ~~~~~~~~~~~~~g~id~lv~nAg~  109 (273)
T 1ae1_A           85 RDKLMQTVAHVFDGKLNILVNNAGV  109 (273)
T ss_dssp             HHHHHHHHHHHTTSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCcEEEECCCC
Confidence            210       1 1679999887654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=90.09  E-value=0.18  Score=41.08  Aligned_cols=94  Identities=21%  Similarity=0.220  Sum_probs=56.0

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+|.+||=.|+|. |..++.+|+. |++ ++++|.++ -++.+++    .+..              ..  .|..+.+..
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa~--------------~~--i~~~~~~~~  218 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGAM--------------QT--FNSSEMSAP  218 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS--------------EE--EETTTSCHH
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCCe--------------EE--EeCCCCCHH
Confidence            3578999999976 6777777754 776 68889743 5555543    2321              11  222222110


Q ss_pred             -----cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          117 -----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       117 -----~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                           ......+|+|+-.      ......++...++++++|.+.+...
T Consensus       219 ~~~~~~~~~~g~d~v~d~------~G~~~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          219 QMQSVLRELRFNQLILET------AGVPQTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             HHHHHHGGGCSSEEEEEC------SCSHHHHHHHHHHCCTTCEEEECCC
T ss_pred             HHHHhhcccCCccccccc------ccccchhhhhhheecCCeEEEEEec
Confidence                 0113467877654      2335677888889999998776543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=90.05  E-value=1.7  Score=33.23  Aligned_cols=80  Identities=16%  Similarity=0.214  Sum_probs=51.6

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   ++..++..|++|++++.+ +.++.+...+...+             .++.+..+|..+.+..
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~   69 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG-------------FKARGLVLNISDIESI   69 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEecCCCHHHH
Confidence            468899988987664   455566679999999974 35554444443332             3677888888765422


Q ss_pred             c-------ccCCCccEEEEecccc
Q 029065          117 K-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~~  133 (199)
                      .       ...++.|+++.+.-+.
T Consensus        70 ~~~~~~~~~~~~~id~li~~Ag~~   93 (247)
T 3lyl_A           70 QNFFAEIKAENLAIDILVNNAGIT   93 (247)
T ss_dssp             HHHHHHHHHTTCCCSEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCC
Confidence            1       1135789998876554

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=89.98  E-value=0.31  Score=39.47  Aligned_cols=91  Identities=20%  Similarity=0.249  Sum_probs=53.2

Q ss_pred             CCCCcEEEeCCC--cChHHHHHH-hhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC-Ccc
Q 029065           41 LKGKRVIELGAG--CGVAGFGMA-LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-EDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG--~G~~sl~la-~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~-~~~  115 (199)
                      -+|++||-.||+  .|.....++ ..|++|+++|.+ +.++.+++    .+.             .   ...|..+ .+.
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~-------------~---~~~d~~~~~~~  203 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGF-------------D---AAFNYKTVNSL  203 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC-------------S---EEEETTSCSCH
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCC-------------c---EEEecCCHHHH
Confidence            367899999983  465555555 469999999974 35444421    121             1   1134332 110


Q ss_pred             ---c-cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          116 ---I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       116 ---~-~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                         . ....+.+|+++.+-.       ...+....+.++++|.+++.
T Consensus       204 ~~~~~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          204 EEALKKASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             HHHHHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHHhCCCCeEEEECCC-------hHHHHHHHHHHhcCCEEEEE
Confidence               0 011247999886632       13467777889999987654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=89.97  E-value=0.23  Score=40.54  Aligned_cols=60  Identities=3%  Similarity=-0.069  Sum_probs=40.3

Q ss_pred             cEEEEEeeeCCCccccccCCCccEEEEeccccCCc--------------ChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          102 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------LLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       102 ~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~--------------~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ...+.+.|...... ....++||+|++++|+....              ....++..+.++|+|+|.+++.....
T Consensus        14 ~~~ii~gD~~~~l~-~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           14 NGSMYIGDSLELLE-SFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             SEEEEESCHHHHGG-GSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CceEEeCcHHHHHh-hCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            34555555432111 12256899999998875432              46778888899999999998876543

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=89.94  E-value=2.9  Score=32.80  Aligned_cols=82  Identities=17%  Similarity=0.150  Sum_probs=50.9

Q ss_pred             cCCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           36 FCPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        36 ~~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      +....+++++||=-|++.|+   ++..++..|++|+++|.+ +.++.+...   .             ...+.+..+|..
T Consensus        20 ~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~-------------~~~~~~~~~Dv~   83 (277)
T 4dqx_A           20 FQSMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE---I-------------GSKAFGVRVDVS   83 (277)
T ss_dssp             --CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---H-------------CTTEEEEECCTT
T ss_pred             cccCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---h-------------CCceEEEEecCC
Confidence            34456789999999987764   555566679999999974 333333222   1             125677778887


Q ss_pred             CCcccc-------ccCCCccEEEEecccc
Q 029065          112 NEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       112 ~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +.....       ..-++.|++|.+.-+.
T Consensus        84 d~~~v~~~~~~~~~~~g~iD~lv~nAg~~  112 (277)
T 4dqx_A           84 SAKDAESMVEKTTAKWGRVDVLVNNAGFG  112 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence            654221       1124789998876543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=89.93  E-value=0.96  Score=36.98  Aligned_cols=89  Identities=13%  Similarity=0.102  Sum_probs=53.8

Q ss_pred             CcEEEeCCCc-ChHH-HHHH-h-hCCe-EEEeech-h---HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           44 KRVIELGAGC-GVAG-FGMA-L-LGCN-VITTDQI-E---VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        44 ~~VLdlGcG~-G~~s-l~la-~-~g~~-v~~~D~~-~---~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      .+||=+|+|. |+.+ +.+| + .|++ |+++|.+ +   -++.+++    .+.               +..  |..+.+
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa---------------~~v--~~~~~~  232 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA---------------TYV--DSRQTP  232 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC---------------EEE--ETTTSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC---------------ccc--CCCccC
Confidence            8999999965 7777 7777 5 4887 9999973 3   4555532    231               111  222111


Q ss_pred             c--ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          115 H--IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       115 ~--~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .  .....+.+|+|+-.-      .-...+....+.++++|.+++..
T Consensus       233 ~~~i~~~~gg~Dvvid~~------g~~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          233 VEDVPDVYEQMDFIYEAT------GFPKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             GGGHHHHSCCEEEEEECS------CCHHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHhCCCCCEEEECC------CChHHHHHHHHHHhcCCEEEEEe
Confidence            0  000023789887542      22346777888899999876543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=89.89  E-value=0.93  Score=35.11  Aligned_cols=79  Identities=15%  Similarity=0.128  Sum_probs=49.3

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      +++++||=.|++.|+   +...++..|++|+++|.+ +.++.+...+...+             .++.+..+|+.+.+..
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~   73 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-------------FKVEASVCDLSSRSER   73 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CEEEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHHH
Confidence            578899988886653   445555679999999873 34444433333221             2567777888765322


Q ss_pred             cc-------cC-CCccEEEEeccc
Q 029065          117 KA-------VA-PPFDYIIGTDVV  132 (199)
Q Consensus       117 ~~-------~~-~~fD~Ii~~~~~  132 (199)
                      ..       .- ++.|++|.+.-+
T Consensus        74 ~~~~~~~~~~~~g~id~lv~~Ag~   97 (260)
T 2ae2_A           74 QELMNTVANHFHGKLNILVNNAGI   97 (260)
T ss_dssp             HHHHHHHHHHTTTCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCCEEEECCCC
Confidence            10       11 679999877554

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=89.78  E-value=0.78  Score=36.00  Aligned_cols=79  Identities=14%  Similarity=0.203  Sum_probs=51.2

Q ss_pred             CCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...+             ..+.+..+|+.+.+...
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~v~   69 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG-------------GTALAQVLDVTDRHSVA   69 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT-------------CEEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHHHH
Confidence            57889989987764   455566779999999974 45555555444332             35677778887654221


Q ss_pred             -------ccCCCccEEEEecccc
Q 029065          118 -------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       118 -------~~~~~fD~Ii~~~~~~  133 (199)
                             ..-++.|++|.+.-+.
T Consensus        70 ~~~~~~~~~~g~iD~lVnnAG~~   92 (264)
T 3tfo_A           70 AFAQAAVDTWGRIDVLVNNAGVM   92 (264)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCC
Confidence                   1124799998876543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=89.77  E-value=0.36  Score=41.77  Aligned_cols=41  Identities=29%  Similarity=0.317  Sum_probs=32.8

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHH
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNV   83 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~   83 (199)
                      ..+++||.||.|-+++.+...|.+ |.++|+.+ +++.-+.|.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~  130 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH  130 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc
Confidence            358999999999999999998988 88889854 655555553

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=89.77  E-value=1.2  Score=35.13  Aligned_cols=81  Identities=12%  Similarity=0.078  Sum_probs=52.5

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-h-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ..++++++|=-|++.|+   ++..++..|++|+++|. + +.++.+...+...             ..++.+..+|..+.
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~   91 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL-------------GARVIFLRADLADL   91 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT-------------TCCEEEEECCTTSG
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCH
Confidence            34678999999987764   55566677999999985 3 3444444444333             23678888888766


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      +...       ..-++.|++|.+.-+
T Consensus        92 ~~v~~~~~~~~~~~g~iD~lvnnAg~  117 (280)
T 4da9_A           92 SSHQATVDAVVAEFGRIDCLVNNAGI  117 (280)
T ss_dssp             GGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            4321       112478999877654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=89.61  E-value=2.2  Score=33.87  Aligned_cols=82  Identities=22%  Similarity=0.183  Sum_probs=49.6

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   ++..++..|++|++++.+ +.++.+...+...+.          ...++.+..+|+.+.+..
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----------~~~~~~~~~~Dv~d~~~v   93 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV----------PAEKINAVVADVTEASGQ   93 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----------CGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC----------CCceEEEEecCCCCHHHH
Confidence            578899988886653   445555679999999974 344444443333210          011567778888765422


Q ss_pred             cc-------cCCCccEEEEeccc
Q 029065          117 KA-------VAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~~-------~~~~fD~Ii~~~~~  132 (199)
                      ..       .-++.|++|.+.-+
T Consensus        94 ~~~~~~~~~~~g~iD~lvnnAG~  116 (297)
T 1xhl_A           94 DDIINTTLAKFGKIDILVNNAGA  116 (297)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCc
Confidence            10       12478999887554

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=89.57  E-value=0.96  Score=35.34  Aligned_cols=83  Identities=18%  Similarity=0.223  Sum_probs=51.5

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      +..+++++||=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...+             .++.+..+|+.+.
T Consensus        26 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dl~~~   92 (272)
T 1yb1_A           26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG-------------AKVHTFVVDCSNR   92 (272)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCH
T ss_pred             ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC-------------CeEEEEEeeCCCH
Confidence            345778999999976553   344445569999999973 34444444333322             3577888888765


Q ss_pred             cccc-------ccCCCccEEEEecccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +...       ...+++|++|.+..+.
T Consensus        93 ~~v~~~~~~~~~~~g~iD~li~~Ag~~  119 (272)
T 1yb1_A           93 EDIYSSAKKVKAEIGDVSILVNNAGVV  119 (272)
T ss_dssp             HHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHHCCCCcEEEECCCcC
Confidence            4221       1124789998876543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=89.51  E-value=0.95  Score=35.52  Aligned_cols=82  Identities=22%  Similarity=0.220  Sum_probs=52.3

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-------------h-hHHHHHHHHHHHhhhccccCCCCCCCCC
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-------------I-EVLPLLKRNVEWNTSRISQMNPGSDLLG  101 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-------------~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~  101 (199)
                      ..++++++|=.|++.|+   ++..++..|++|+++|.             + +.++.+...+...             ..
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~   77 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ-------------GR   77 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT-------------TC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc-------------CC
Confidence            45789999999998764   55666677999999985             2 2334333333322             23


Q ss_pred             cEEEEEeeeCCCcccc-------ccCCCccEEEEecccc
Q 029065          102 SIQAVELDWGNEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       102 ~i~~~~~d~~~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ++.+..+|..+.+...       ..-++.|++|.+.-+.
T Consensus        78 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~  116 (280)
T 3pgx_A           78 KALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVL  116 (280)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            6777888887654221       1124799998875543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=89.28  E-value=0.63  Score=36.59  Aligned_cols=81  Identities=14%  Similarity=0.109  Sum_probs=51.8

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=-|++.|+   ++..++..|++|+++|.+ +.++.+...+...+             ..+.+..+|..+...
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~d~~~   91 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAG-------------LEGRGAVLNVNDATA   91 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT-------------CCCEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEEeCCCHHH
Confidence            4678999988987664   555666779999999974 35555544444332             245677778765532


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|++|.+.-+.
T Consensus        92 v~~~~~~~~~~~g~iD~lvnnAg~~  116 (270)
T 3ftp_A           92 VDALVESTLKEFGALNVLVNNAGIT  116 (270)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            21       1124789998876543

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=89.28  E-value=0.079  Score=43.08  Aligned_cols=93  Identities=23%  Similarity=0.272  Sum_probs=55.1

Q ss_pred             CCCCCcEEEeCC-C-cChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGc-G-~G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .-+|++||=.|+ | .|...+.+++ .|++|+++|.++ -++.+.+.   .+.             . .  ..|..+.+.
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~-------------~-~--~~~~~~~~~  207 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---LGF-------------D-G--AIDYKNEDL  207 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---TCC-------------S-E--EEETTTSCH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCC-------------C-E--EEECCCHHH
Confidence            346889999998 3 4766666664 589999999743 44444221   121             1 1  123222211


Q ss_pred             c----cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          116 I----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       116 ~----~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      .    ....+.+|+++-+-.       ...+....+.++++|.+++.
T Consensus       208 ~~~~~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          208 AAGLKRECPKGIDVFFDNVG-------GEILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             HHHHHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHHhcCCCceEEEECCC-------cchHHHHHHHHhhCCEEEEE
Confidence            0    011347999886532       14677888889999987664

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=89.22  E-value=0.94  Score=35.19  Aligned_cols=82  Identities=24%  Similarity=0.310  Sum_probs=52.5

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ...+++++||=.|++.|+   +...++..|++|++++.+ +.++.+...+...+             ..+.+..+|..+.
T Consensus        24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~   90 (262)
T 3rkr_A           24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG-------------GEAESHACDLSHS   90 (262)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CEEEEEECCTTCH
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-------------CceeEEEecCCCH
Confidence            355788999999987653   444555679999999974 35555544444332             3577888888765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      +...       ...++.|++|.+..+
T Consensus        91 ~~v~~~~~~~~~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A           91 DAIAAFATGVLAAHGRCDVLVNNAGV  116 (262)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            4221       112478999887654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=89.03  E-value=0.25  Score=38.87  Aligned_cols=40  Identities=0%  Similarity=-0.066  Sum_probs=31.5

Q ss_pred             CCCccEEEEeccccCC-c-------------ChHHHHHHHHHhcCCCcEEEEEE
Q 029065          120 APPFDYIIGTDVVYAE-H-------------LLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~-~-------------~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .++||+|++.+|+... .             ....++..+.++|+|+|.+++..
T Consensus        21 ~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A           21 NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (260)
T ss_dssp             TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            4689999998886543 1             45677788889999999998875

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=88.97  E-value=0.67  Score=36.43  Aligned_cols=81  Identities=16%  Similarity=0.234  Sum_probs=52.6

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++|+++|=-|++.|+   ++..++..|++|+++|.+ +.++.+.+.+...+             .++.+..+|+.+.+.
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~   89 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVG-------------HDAEAVAFDVTSESE   89 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-------------CCEEECCCCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEcCCCCHHH
Confidence            4679999999987664   555666779999999973 45555544443332             356777778765542


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ...++.|+++.+.-+.
T Consensus        90 v~~~~~~~~~~~g~iD~lv~nAg~~  114 (271)
T 4ibo_A           90 IIEAFARLDEQGIDVDILVNNAGIQ  114 (271)
T ss_dssp             HHHHHHHHHHHTCCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCC
Confidence            21       1134799999876553

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=88.92  E-value=2.1  Score=32.97  Aligned_cols=77  Identities=22%  Similarity=0.282  Sum_probs=46.4

Q ss_pred             CCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-
Q 029065           43 GKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-  117 (199)
Q Consensus        43 ~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-  117 (199)
                      ++++|=.|++.|+   +...++..|++|++++.+ +.++.+...+...+             .++.+..+|+.+.+... 
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~v~~   68 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-------------GHAVAVKVDVSDRDQVFA   68 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEecCCCHHHHHH
Confidence            4678888876653   445555679999999973 34444433333221             25677778887654221 


Q ss_pred             ------ccCCCccEEEEeccc
Q 029065          118 ------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       118 ------~~~~~fD~Ii~~~~~  132 (199)
                            ..-++.|++|.+.-+
T Consensus        69 ~~~~~~~~~g~id~lv~nAg~   89 (256)
T 1geg_A           69 AVEQARKTLGGFDVIVNNAGV   89 (256)
T ss_dssp             HHHHHHHHTTCCCEEEECCCC
T ss_pred             HHHHHHHHhCCCCEEEECCCC
Confidence                  112479999887543

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=88.91  E-value=0.27  Score=39.95  Aligned_cols=93  Identities=20%  Similarity=0.217  Sum_probs=51.4

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-h-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-L-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-  115 (199)
                      -+|.+||=+|+|. |...+.+++ . |++|+++|.++ -++.+++    .+.             ...   +|..+.+. 
T Consensus       162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga-------------~~~---i~~~~~~~~  221 (348)
T 4eez_A          162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGA-------------DVT---INSGDVNPV  221 (348)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTC-------------SEE---EEC-CCCHH
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCC-------------eEE---EeCCCCCHH
Confidence            3578999999986 455555554 4 67899999744 4444332    221             111   22222211 


Q ss_pred             --cc--ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 --IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 --~~--~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                        ..  .....+|+++..      ..-...+....+.++++|.+.+..
T Consensus       222 ~~v~~~t~g~g~d~~~~~------~~~~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          222 DEIKKITGGLGVQSAIVC------AVARIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             HHHHHHTTSSCEEEEEEC------CSCHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHhhhhcCCCCceEEEEe------ccCcchhheeheeecCCceEEEEe
Confidence              00  112346665543      233566777788899988866543

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=88.79  E-value=0.88  Score=35.82  Aligned_cols=80  Identities=24%  Similarity=0.270  Sum_probs=51.0

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-----------------hHHHHHHHHHHHhhhccccCCCCCCC
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-----------------EVLPLLKRNVEWNTSRISQMNPGSDL   99 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-----------------~~l~~a~~~~~~~~~~~~~~~~~~~~   99 (199)
                      .++++++|=-|++.|+   ++..++..|++|+++|.+                 +.++.+...+...             
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------   74 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH-------------   74 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT-------------
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc-------------
Confidence            4678999999998764   556666779999999863                 2333332222222             


Q ss_pred             CCcEEEEEeeeCCCcccc-------ccCCCccEEEEeccc
Q 029065          100 LGSIQAVELDWGNEDHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       100 ~~~i~~~~~d~~~~~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..++.+..+|..+.+...       ..-++.|++|.+.-+
T Consensus        75 ~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           75 NRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            236788888887654221       112479999887554

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=88.69  E-value=2.9  Score=34.13  Aligned_cols=84  Identities=18%  Similarity=0.207  Sum_probs=53.7

Q ss_pred             CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-H-------HHHHHHHHHHhhhccccCCCCCCCCCcEEE
Q 029065           37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-V-------LPLLKRNVEWNTSRISQMNPGSDLLGSIQA  105 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~-------l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~  105 (199)
                      +...++|++||=.|++.|+   ++..++..|++|++++.+. -       ++.+...+...             ..++.+
T Consensus        39 ~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~-------------g~~~~~  105 (346)
T 3kvo_A           39 NTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV-------------GGKALP  105 (346)
T ss_dssp             CCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHT-------------TCEEEE
T ss_pred             cCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhc-------------CCeEEE
Confidence            4567789999999997764   5566667799999998532 1       33333333333             235677


Q ss_pred             EEeeeCCCcccc-------ccCCCccEEEEecccc
Q 029065          106 VELDWGNEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       106 ~~~d~~~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..+|+.+.+...       ..-++.|++|.+.-+.
T Consensus       106 ~~~Dv~d~~~v~~~~~~~~~~~g~iDilVnnAG~~  140 (346)
T 3kvo_A          106 CIVDVRDEQQISAAVEKAIKKFGGIDILVNNASAI  140 (346)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            788887654221       1124799999876543

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=88.67  E-value=1.7  Score=33.48  Aligned_cols=80  Identities=16%  Similarity=0.212  Sum_probs=46.8

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      .+++++||=.|++.|+   +...++..|++|++++. +. .++.....+...             ..++.+..+|+.+.+
T Consensus        18 ~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~   84 (274)
T 1ja9_A           18 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL-------------GAQGVAIQADISKPS   84 (274)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------TCCEEEEECCTTSHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc-------------CCcEEEEEecCCCHH
Confidence            4578899988875442   33444456999999886 43 444443333322             225677778876553


Q ss_pred             cccc-------cCCCccEEEEeccc
Q 029065          115 HIKA-------VAPPFDYIIGTDVV  132 (199)
Q Consensus       115 ~~~~-------~~~~fD~Ii~~~~~  132 (199)
                      ....       .-+..|+++.+..+
T Consensus        85 ~~~~~~~~~~~~~~~~d~vi~~Ag~  109 (274)
T 1ja9_A           85 EVVALFDKAVSHFGGLDFVMSNSGM  109 (274)
T ss_dssp             HHHHHHHHHHHHHSCEEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            2211       01378998876543

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=88.29  E-value=2.8  Score=32.67  Aligned_cols=81  Identities=21%  Similarity=0.256  Sum_probs=51.4

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh--------HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE--------VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL  108 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~--------~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  108 (199)
                      .++++++|=.|++.|+   ++..++..|++|++++.+.        .++.+...+...+             .++.+..+
T Consensus         3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~   69 (274)
T 3e03_A            3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAG-------------GQGLALKC   69 (274)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHT-------------SEEEEEEC
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcC-------------CeEEEEeC
Confidence            3678999999998764   5556667799999998632        1333333333332             36778888


Q ss_pred             eeCCCcccc-------ccCCCccEEEEecccc
Q 029065          109 DWGNEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       109 d~~~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      |..+.....       ...++.|++|.+.-+.
T Consensus        70 Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~  101 (274)
T 3e03_A           70 DIREEDQVRAAVAATVDTFGGIDILVNNASAI  101 (274)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence            887654221       1125799998876543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=88.27  E-value=3.1  Score=28.93  Aligned_cols=92  Identities=14%  Similarity=0.135  Sum_probs=49.6

Q ss_pred             CcEEEeCCCc-C-hHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc-
Q 029065           44 KRVIELGAGC-G-VAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-  119 (199)
Q Consensus        44 ~~VLdlGcG~-G-~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-  119 (199)
                      .+|+=+|||. | .++..|...|.+|+++|.+ +.++.++.    .+               +.+...|..+.+.+... 
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~g---------------~~~i~gd~~~~~~l~~a~   68 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----RG---------------VRAVLGNAANEEIMQLAH   68 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT---------------CEEEESCTTSHHHHHHTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----cC---------------CCEEECCCCCHHHHHhcC
Confidence            3788888875 4 2444555568899999984 45554432    22               34555555443322211 


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEE
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      -..+|++++.-.   .......+-...+.+.|+..++.
T Consensus        69 i~~ad~vi~~~~---~~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           69 LECAKWLILTIP---NGYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             GGGCSEEEECCS---CHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             cccCCEEEEECC---ChHHHHHHHHHHHHHCCCCeEEE
Confidence            246898886522   11122223334455677776444

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=88.09  E-value=1  Score=35.40  Aligned_cols=80  Identities=14%  Similarity=0.136  Sum_probs=52.1

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||.+|=-|++.|+   ++..++..|++|+.+|.+ +..+.+.. +...             ..+..+..+|..+...
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~-~~~~-------------~~~~~~~~~Dv~~~~~   69 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDA-LAQR-------------QPRATYLPVELQDDAQ   69 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHH-HHHH-------------CTTCEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHH-HHhc-------------CCCEEEEEeecCCHHH
Confidence            4789999999998875   567777889999999863 23333322 2222             2256777788876542


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|+++.+.-+.
T Consensus        70 v~~~v~~~~~~~G~iDiLVNnAGi~   94 (258)
T 4gkb_A           70 CRDAVAQTIATFGRLDGLVNNAGVN   94 (258)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCCC
Confidence            21       1126899999886553

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=88.05  E-value=1.8  Score=33.41  Aligned_cols=77  Identities=17%  Similarity=0.303  Sum_probs=48.2

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...+             .++.+..+|+.+....
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~v   69 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG-------------GQCVPVVCDSSQESEV   69 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS-------------SEEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC-------------CceEEEECCCCCHHHH
Confidence            467889988876653   445555679999999873 34444444333222             2567777888765421


Q ss_pred             c----c----cCCCccEEEEec
Q 029065          117 K----A----VAPPFDYIIGTD  130 (199)
Q Consensus       117 ~----~----~~~~fD~Ii~~~  130 (199)
                      .    .    ..++.|++|.+.
T Consensus        70 ~~~~~~~~~~~~g~id~lvnnA   91 (260)
T 2qq5_A           70 RSLFEQVDREQQGRLDVLVNNA   91 (260)
T ss_dssp             HHHHHHHHHHHTTCCCEEEECC
T ss_pred             HHHHHHHHHhcCCCceEEEECC
Confidence            1    0    135789998876

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=88.01  E-value=2.1  Score=33.47  Aligned_cols=81  Identities=28%  Similarity=0.270  Sum_probs=51.5

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-------------hh-HHHHHHHHHHHhhhccccCCCCCCCCCc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-------------IE-VLPLLKRNVEWNTSRISQMNPGSDLLGS  102 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-------------~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~  102 (199)
                      .++++++|=-|++.|+   ++..++..|++|+++|.             +. .++.+...+...             ..+
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~   74 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA-------------NRR   74 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT-------------TCC
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc-------------CCe
Confidence            4678999999988764   55666677999999985             22 333333333322             236


Q ss_pred             EEEEEeeeCCCcccc-------ccCCCccEEEEecccc
Q 029065          103 IQAVELDWGNEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       103 i~~~~~d~~~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +.+..+|..+.+...       ..-++.|++|.+.-+.
T Consensus        75 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~  112 (277)
T 3tsc_A           75 IVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVA  112 (277)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            778888887654221       1125799999876554

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=88.00  E-value=4.4  Score=27.90  Aligned_cols=70  Identities=21%  Similarity=0.224  Sum_probs=40.4

Q ss_pred             CCcEEEeCCCc-Ch-HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc-
Q 029065           43 GKRVIELGAGC-GV-AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-  118 (199)
Q Consensus        43 ~~~VLdlGcG~-G~-~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~-  118 (199)
                      .++|+=+|||. |. ++..+...|.+|+++|.+ +.++.++.    .+               +.+...|..+.+.... 
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~~---------------~~~~~gd~~~~~~l~~~   66 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLED----EG---------------FDAVIADPTDESFYRSL   66 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----TT---------------CEEEECCTTCHHHHHHS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----CC---------------CcEEECCCCCHHHHHhC
Confidence            56899999865 32 334444568999999984 34443332    22               3455566554432221 


Q ss_pred             cCCCccEEEEecc
Q 029065          119 VAPPFDYIIGTDV  131 (199)
Q Consensus       119 ~~~~fD~Ii~~~~  131 (199)
                      ....+|+|+..-.
T Consensus        67 ~~~~~d~vi~~~~   79 (141)
T 3llv_A           67 DLEGVSAVLITGS   79 (141)
T ss_dssp             CCTTCSEEEECCS
T ss_pred             CcccCCEEEEecC
Confidence            1247899887643

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=87.97  E-value=1.2  Score=34.29  Aligned_cols=80  Identities=15%  Similarity=0.214  Sum_probs=48.5

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=.|++.|+   +...++..|++|+++|.+ +.++...+.+...             ..++.+..+|+.+...
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~   76 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRME-------------GHDVSSVVMDVTNTES   76 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEecCCCHHH
Confidence            3568899988876553   344445569999999973 3444333333322             2257788888876542


Q ss_pred             cccc-------CCCccEEEEeccc
Q 029065          116 IKAV-------APPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~~~-------~~~fD~Ii~~~~~  132 (199)
                      ....       .++.|+++.+..+
T Consensus        77 ~~~~~~~~~~~~~~id~vi~~Ag~  100 (260)
T 3awd_A           77 VQNAVRSVHEQEGRVDILVACAGI  100 (260)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            2110       1478999877543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=87.76  E-value=1.4  Score=34.57  Aligned_cols=82  Identities=16%  Similarity=0.186  Sum_probs=51.6

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-------------hHHHHHHHHHHHhhhccccCCCCCCCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS  102 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-------------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  102 (199)
                      ..++++++|=-|++.|+   ++..++..|++|+++|.+             +.++.....+...             ..+
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~   72 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT-------------GRR   72 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT-------------TCC
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhc-------------CCe
Confidence            45788999999987764   455566679999999863             2333333333222             236


Q ss_pred             EEEEEeeeCCCcccc-------ccCCCccEEEEecccc
Q 029065          103 IQAVELDWGNEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       103 i~~~~~d~~~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +.+..+|..+.+...       ..-++.|++|.+.-+.
T Consensus        73 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  110 (281)
T 3s55_A           73 CISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGIS  110 (281)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            778888887654221       1124799998876553

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=87.73  E-value=3.5  Score=31.09  Aligned_cols=78  Identities=15%  Similarity=0.107  Sum_probs=42.9

Q ss_pred             CCCCCCCCcEEEeCCCcChHHHH----HHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcE-EEEEeee
Q 029065           37 CPSKLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSI-QAVELDW  110 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~~sl~----la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~d~  110 (199)
                      +...+++++||=.|+. |.+|..    ++..|.+|++++.+ +.++...    ..               .+ .+...|+
T Consensus        15 ~~~~l~~~~ilVtGat-G~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~----~~---------------~~~~~~~~Dl   74 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGAN-GKVARYLLSELKNKGHEPVAMVRNEEQGPELR----ER---------------GASDIVVANL   74 (236)
T ss_dssp             ------CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH----HT---------------TCSEEEECCT
T ss_pred             cccCcCCCeEEEECCC-ChHHHHHHHHHHhCCCeEEEEECChHHHHHHH----hC---------------CCceEEEccc
Confidence            3456789999988864 333444    44569999999863 3322211    11               35 6677777


Q ss_pred             CCCccccccCCCccEEEEeccccCCc
Q 029065          111 GNEDHIKAVAPPFDYIIGTDVVYAEH  136 (199)
Q Consensus       111 ~~~~~~~~~~~~fD~Ii~~~~~~~~~  136 (199)
                      .  +.....-+..|+|+.+.......
T Consensus        75 ~--~~~~~~~~~~D~vi~~ag~~~~~   98 (236)
T 3e8x_A           75 E--EDFSHAFASIDAVVFAAGSGPHT   98 (236)
T ss_dssp             T--SCCGGGGTTCSEEEECCCCCTTS
T ss_pred             H--HHHHHHHcCCCEEEECCCCCCCC
Confidence            6  22222235799998776654433

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=87.71  E-value=1.4  Score=34.46  Aligned_cols=81  Identities=16%  Similarity=0.179  Sum_probs=52.3

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      .+++++||=-|++.|+   ++..++..|++|++++. +. .++.+...+...             ...+.+..+|+.+.+
T Consensus        25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~d~~   91 (269)
T 4dmm_A           25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA-------------GGEAFAVKADVSQES   91 (269)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------TCCEEEEECCTTSHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc-------------CCcEEEEECCCCCHH
Confidence            4678999999987764   55566677999999886 33 445444444333             236777888887654


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ...       ..-++.|++|.+.-+.
T Consensus        92 ~v~~~~~~~~~~~g~id~lv~nAg~~  117 (269)
T 4dmm_A           92 EVEALFAAVIERWGRLDVLVNNAGIT  117 (269)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            221       1124789998876554

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=87.64  E-value=1.3  Score=34.24  Aligned_cols=81  Identities=14%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..+++++||=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...+             ..+.+..+|+.+.+
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~D~~~~~   76 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEG-------------LSVTGTVCHVGKAE   76 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEccCCCHH
Confidence            34678899988876653   444555679999999873 34444433333322             25677777876553


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ...       ..-++.|++|.+.-+
T Consensus        77 ~~~~~~~~~~~~~g~iD~lv~~Ag~  101 (260)
T 2zat_A           77 DRERLVAMAVNLHGGVDILVSNAAV  101 (260)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            211       012478999877543

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=87.56  E-value=0.16  Score=41.65  Aligned_cols=91  Identities=15%  Similarity=0.200  Sum_probs=53.4

Q ss_pred             CCCCcEEEeC-CC-cChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELG-AG-CGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlG-cG-~G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      -+|.+||=.| +| .|...+.+++ .|++|+++|.+ +-++.+++    .+..              .  .+|....+..
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~--------------~--~~~~~~~~~~  225 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER----LGAK--------------R--GINYRSEDFA  225 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTCS--------------E--EEETTTSCHH
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCC--------------E--EEeCCchHHH
Confidence            3578999995 34 4777766665 59999999974 45555543    2211              1  1222222110


Q ss_pred             ----cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          117 ----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       117 ----~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                          ....+.+|+|+-+-.-       ..+....+.|+++|.+++.
T Consensus       226 ~~~~~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~  264 (353)
T 4dup_A          226 AVIKAETGQGVDIILDMIGA-------AYFERNIASLAKDGCLSII  264 (353)
T ss_dssp             HHHHHHHSSCEEEEEESCCG-------GGHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHhCCCceEEEECCCH-------HHHHHHHHHhccCCEEEEE
Confidence                0113579998865321       2566777888998886654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=87.53  E-value=1.3  Score=34.78  Aligned_cols=80  Identities=14%  Similarity=0.087  Sum_probs=50.2

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=.|++.|+   +...++..|++|+++|.+ +.++.+...+...+             .++.+..+|+.+.+.
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~~~~~   85 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG-------------VEADGRTCDVRSVPE   85 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEECCCCCHHH
Confidence            4678999999987653   445555679999999974 34444444333222             256777788876542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|++|.+.-+
T Consensus        86 v~~~~~~~~~~~g~iD~lv~~Ag~  109 (277)
T 2rhc_B           86 IEALVAAVVERYGPVDVLVNNAGR  109 (277)
T ss_dssp             HHHHHHHHHHHTCSCSEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence            21       112478999877544

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=87.47  E-value=1.1  Score=34.34  Aligned_cols=80  Identities=23%  Similarity=0.302  Sum_probs=47.3

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=.|++.|+   +...++..|++|+++|.+ +.++.....+...             ..++.+..+|+.+.+.
T Consensus         8 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~   74 (255)
T 1fmc_A            8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-------------GGQAFACRCDITSEQE   74 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh-------------CCceEEEEcCCCCHHH
Confidence            3578889988865443   333444569999999973 3444443333322             2256777788765542


Q ss_pred             cccc-------CCCccEEEEeccc
Q 029065          116 IKAV-------APPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~~~-------~~~fD~Ii~~~~~  132 (199)
                      ....       .+++|+||.+...
T Consensus        75 ~~~~~~~~~~~~~~~d~vi~~Ag~   98 (255)
T 1fmc_A           75 LSALADFAISKLGKVDILVNNAGG   98 (255)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCC
Confidence            2111       1378999877544

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=87.43  E-value=1.5  Score=34.13  Aligned_cols=82  Identities=20%  Similarity=0.273  Sum_probs=50.0

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHH-HHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNV-EWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      ...++++++|=.|++.|+   ++..++..|++|++++.+ +.++.+...+ ...+             .++.+..+|+.+
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-------------~~~~~~~~Dl~~   82 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG-------------VETMAFRCDVSN   82 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-------------CCEEEEECCTTC
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-------------CeEEEEEcCCCC
Confidence            345678999999987653   445555679999999873 3444443333 2221             256777788875


Q ss_pred             Ccccc-------ccCCCccEEEEeccc
Q 029065          113 EDHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       113 ~~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      .+...       ..-++.|++|.+.-+
T Consensus        83 ~~~v~~~~~~~~~~~g~iD~lvnnAg~  109 (267)
T 1vl8_A           83 YEEVKKLLEAVKEKFGKLDTVVNAAGI  109 (267)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence            53221       112478999877554

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=87.40  E-value=2.6  Score=32.59  Aligned_cols=90  Identities=18%  Similarity=0.149  Sum_probs=52.0

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++++||=.|++.|+   +...++..|++|+++|.+ +.++.+...+....           ....+.+..+|+.+.+..
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~D~~~~~~v   73 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF-----------EPQKTLFIQCDVADQQQL   73 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS-----------CGGGEEEEECCTTSHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhc-----------CCCceEEEecCCCCHHHH
Confidence            457889999986653   445555679999999873 33333333222110           012567777887755322


Q ss_pred             c-------ccCCCccEEEEeccccCCcChHHH
Q 029065          117 K-------AVAPPFDYIIGTDVVYAEHLLEPL  141 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~~~~~~~~~~  141 (199)
                      .       ..-++.|+++.+.-+.....+...
T Consensus        74 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~  105 (267)
T 2gdz_A           74 RDTFRKVVDHFGRLDILVNNAGVNNEKNWEKT  105 (267)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCSSSHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCChhhHHHH
Confidence            1       012468999988665544444433

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=87.28  E-value=1.3  Score=34.89  Aligned_cols=81  Identities=10%  Similarity=0.090  Sum_probs=49.9

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      -.+++++|=-|++.|+   ++..++..|++|++++.+ +.++.+...+...             ...+.+..+|+.+.+.
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~d~~~   87 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA-------------GHDVDGSSCDVTSTDE   87 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-------------TCCEEEEECCTTCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEECCCCCHHH
Confidence            3468899999987764   455666779999999974 3444444444332             2367888888876542


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|++|.+.-+.
T Consensus        88 v~~~~~~~~~~~g~id~lv~nAg~~  112 (279)
T 3sju_A           88 VHAAVAAAVERFGPIGILVNSAGRN  112 (279)
T ss_dssp             HHHHHHHHHHHHCSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCCC
Confidence            21       1124789998876543

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=87.28  E-value=1.3  Score=34.41  Aligned_cols=82  Identities=17%  Similarity=0.191  Sum_probs=50.2

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=.|++.|+   +...++..|++|+++|.+ +.++.+...+.....           ..++.+..+|..+.+.
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~   78 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP-----------DAEVLTTVADVSDEAQ   78 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT-----------TCCEEEEECCTTSHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-----------CceEEEEEccCCCHHH
Confidence            3678999999987664   445556679999999973 344444443332200           1256777788876542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|++|.+.-+
T Consensus        79 v~~~~~~~~~~~g~id~lv~nAg~  102 (267)
T 1iy8_A           79 VEAYVTATTERFGRIDGFFNNAGI  102 (267)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCc
Confidence            21       012478999887544

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=87.28  E-value=1.3  Score=34.28  Aligned_cols=79  Identities=18%  Similarity=0.180  Sum_probs=49.4

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   +...++..|++|+++|.+ +.++.+...+...             ..++.+..+|+.+.+..
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~   71 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK-------------GVEARSYVCDVTSEEAV   71 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-------------TSCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHHH
Confidence            578899999987664   445555679999999874 3444443333222             12567777888655321


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ..-++.|++|.+.-+
T Consensus        72 ~~~~~~~~~~~g~id~lv~nAg~   94 (262)
T 1zem_A           72 IGTVDSVVRDFGKIDFLFNNAGY   94 (262)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCCC
Confidence            1       112478999887544

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=87.25  E-value=1.4  Score=34.27  Aligned_cols=83  Identities=22%  Similarity=0.314  Sum_probs=51.0

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=-|++.|+   ++..++..|++|+++|.+ +.++.+...+.....           ...+.....|..+...
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~D~~~~~~   75 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYP-----------DAILQPVVADLGTEQG   75 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCT-----------TCEEEEEECCTTSHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC-----------CceEEEEecCCCCHHH
Confidence            3578999999987664   455566679999999974 344444444433211           1246667777765432


Q ss_pred             cc---ccCCCccEEEEecccc
Q 029065          116 IK---AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~---~~~~~fD~Ii~~~~~~  133 (199)
                      ..   ..-++.|+++.+.-+.
T Consensus        76 ~~~~~~~~g~id~lv~nAg~~   96 (267)
T 3t4x_A           76 CQDVIEKYPKVDILINNLGIF   96 (267)
T ss_dssp             HHHHHHHCCCCSEEEECCCCC
T ss_pred             HHHHHHhcCCCCEEEECCCCC
Confidence            11   1135789998876543

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=87.24  E-value=0.72  Score=36.10  Aligned_cols=78  Identities=19%  Similarity=0.314  Sum_probs=53.6

Q ss_pred             cCCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           36 FCPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        36 ~~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      |.+..|+||++|=-|++.|+   ++..++..|++|+.+|.+. .++.                   ....++....+|..
T Consensus         4 f~~dlf~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~-------------------~~~~~~~~~~~Dv~   64 (242)
T 4b79_A            4 FQHDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA-------------------PRHPRIRREELDIT   64 (242)
T ss_dssp             BCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS-------------------CCCTTEEEEECCTT
T ss_pred             CCCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh-------------------hhcCCeEEEEecCC
Confidence            56778999999999998875   6677778899999999732 2211                   01236777778876


Q ss_pred             CCcccc---ccCCCccEEEEeccc
Q 029065          112 NEDHIK---AVAPPFDYIIGTDVV  132 (199)
Q Consensus       112 ~~~~~~---~~~~~fD~Ii~~~~~  132 (199)
                      +.+...   ..-++.|+++-+.-+
T Consensus        65 ~~~~v~~~~~~~g~iDiLVNNAGi   88 (242)
T 4b79_A           65 DSQRLQRLFEALPRLDVLVNNAGI   88 (242)
T ss_dssp             CHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CHHHHHHHHHhcCCCCEEEECCCC
Confidence            654221   123679999877544

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=87.23  E-value=0.89  Score=35.96  Aligned_cols=82  Identities=16%  Similarity=0.181  Sum_probs=50.7

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ...++++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...             ...+.+..+|..+.
T Consensus        23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~d~   89 (283)
T 3v8b_A           23 MMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA-------------GGQAIALEADVSDE   89 (283)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT-------------TCCEEEEECCTTCH
T ss_pred             hcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCH
Confidence            345678999999987764   455566779999999974 3444444433222             23677888888765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      +...       ..-++.|++|.+.-+
T Consensus        90 ~~v~~~~~~~~~~~g~iD~lVnnAg~  115 (283)
T 3v8b_A           90 LQMRNAVRDLVLKFGHLDIVVANAGI  115 (283)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence            4221       112479999887554

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=87.18  E-value=1.8  Score=33.34  Aligned_cols=80  Identities=16%  Similarity=0.050  Sum_probs=47.9

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=.|++.|+   +...++..|++|++++.+ +.++.+...+...+             .++.+...|..+.+.
T Consensus        11 ~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~   77 (266)
T 1xq1_A           11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG-------------FQVTGSVCDASLRPE   77 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeeEEEECCCCCHHH
Confidence            3578899988876553   344445569999999873 34444433333221             256777778765432


Q ss_pred             cccc--------CCCccEEEEeccc
Q 029065          116 IKAV--------APPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~~~--------~~~fD~Ii~~~~~  132 (199)
                      ....        .++.|++|.+.-+
T Consensus        78 ~~~~~~~~~~~~~~~id~li~~Ag~  102 (266)
T 1xq1_A           78 REKLMQTVSSMFGGKLDILINNLGA  102 (266)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred             HHHHHHHHHHHhCCCCcEEEECCCC
Confidence            2110        1578999877544

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=87.17  E-value=0.49  Score=37.47  Aligned_cols=81  Identities=25%  Similarity=0.264  Sum_probs=51.6

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...             ..++.+..+|..+...
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~   71 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG-------------GGEAAALAGDVGDEAL   71 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT-------------TCCEEECCCCTTCHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEECCCCCHHH
Confidence            4678999999987764   555666779999999974 3444444433222             2356777778765532


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|++|.+.-+.
T Consensus        72 v~~~~~~~~~~~g~iD~lvnnAg~~   96 (280)
T 3tox_A           72 HEALVELAVRRFGGLDTAFNNAGAL   96 (280)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            21       1124799998876543

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=87.14  E-value=1.2  Score=35.78  Aligned_cols=82  Identities=23%  Similarity=0.208  Sum_probs=51.7

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-------------hHHHHHHHHHHHhhhccccCCCCCCCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS  102 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-------------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  102 (199)
                      ..+++++||=-|++.|+   ++..++..|++|+++|.+             +.++.+...+...             ..+
T Consensus        42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~  108 (317)
T 3oec_A           42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ-------------GRR  108 (317)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT-------------TCC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc-------------CCe
Confidence            45688999999987764   556666779999998753             2333333333222             236


Q ss_pred             EEEEEeeeCCCcccc-------ccCCCccEEEEecccc
Q 029065          103 IQAVELDWGNEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       103 i~~~~~d~~~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +.+..+|+.+.....       ..-++.|++|.+.-+.
T Consensus       109 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~  146 (317)
T 3oec_A          109 IIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGIS  146 (317)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            788888887654221       1124799998875543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=86.94  E-value=0.61  Score=38.81  Aligned_cols=97  Identities=27%  Similarity=0.261  Sum_probs=57.8

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-  115 (199)
                      -+|.+||-+|||. |..++.+|+ .|+ +|+++|.+ +-++.+++    .+.               +  .+|....+. 
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa---------------~--~i~~~~~~~~  242 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF---------------E--TIDLRNSAPL  242 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC---------------E--EEETTSSSCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---------------c--EEcCCCcchH
Confidence            3678999999986 888888886 588 79999974 35555432    221               2  133322211 


Q ss_pred             ---c-ccc-CCCccEEEEeccccC--------CcChHHHHHHHHHhcCCCcEEEEE
Q 029065          116 ---I-KAV-APPFDYIIGTDVVYA--------EHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       116 ---~-~~~-~~~fD~Ii~~~~~~~--------~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                         . ... ...+|+|+-.-.-..        .......+....+.|+++|++.+.
T Consensus       243 ~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          243 RDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             HHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             HHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence               0 011 236999986432110        001234678888899999987654

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=86.89  E-value=1.8  Score=33.45  Aligned_cols=83  Identities=14%  Similarity=0.180  Sum_probs=52.9

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+++++|=-|++.|+   ++..++..|++|++++.+ +.++.+...+.....          ....+.+..+|..+.+..
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v   74 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNK----------HVQEPIVLPLDITDCTKA   74 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCT----------TSCCCEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcc----------ccCcceEEeccCCCHHHH
Confidence            568899999987764   555666779999999974 455555554433310          023667788888765422


Q ss_pred             c-------ccCCCccEEEEecccc
Q 029065          117 K-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~~  133 (199)
                      .       ..-++.|++|.+.-+.
T Consensus        75 ~~~~~~~~~~~g~iD~lvnnAg~~   98 (250)
T 3nyw_A           75 DTEIKDIHQKYGAVDILVNAAAMF   98 (250)
T ss_dssp             HHHHHHHHHHHCCEEEEEECCCCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCcC
Confidence            1       1125799998876553

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=86.84  E-value=0.16  Score=41.01  Aligned_cols=91  Identities=11%  Similarity=0.076  Sum_probs=53.8

Q ss_pred             CCCCcEEEeCC--CcChHHHHHH-hhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGA--GCGVAGFGMA-LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGc--G~G~~sl~la-~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      -++++||-.|+  |.|...+.++ ..|++|+++|.+ +-++.+++    .+.             ..   ..|..+.+..
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~----~g~-------------~~---~~~~~~~~~~  198 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGA-------------WQ---VINYREEDLV  198 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTC-------------SE---EEETTTSCHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC-------------CE---EEECCCccHH
Confidence            35789999994  3466555555 459999999974 35555543    221             11   1233222110


Q ss_pred             ----c-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          117 ----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       117 ----~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                          . .....+|+++-+-.       ...++...+.++++|.+++.
T Consensus       199 ~~~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          199 ERLKEITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             HHHHHHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEE
Confidence                0 11236999886532       34567778888999987654

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=86.65  E-value=1.7  Score=33.64  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=48.9

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      +++++||=.|++.|+   +...++..|++|+++|.+ +.++.+...+....            ..++.+..+|+.+.+..
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~D~~~~~~~   72 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF------------GVRVLEVAVDVATPEGV   72 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTSHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc------------CCceEEEEcCCCCHHHH
Confidence            568899988887653   445555679999999873 34444433332220            12567777888765422


Q ss_pred             cc-------cCCCccEEEEecccc
Q 029065          117 KA-------VAPPFDYIIGTDVVY  133 (199)
Q Consensus       117 ~~-------~~~~fD~Ii~~~~~~  133 (199)
                      ..       .-++.|++|.+.-+.
T Consensus        73 ~~~~~~~~~~~g~id~lv~~Ag~~   96 (263)
T 3ai3_A           73 DAVVESVRSSFGGADILVNNAGTG   96 (263)
T ss_dssp             HHHHHHHHHHHSSCSEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCC
Confidence            10       114789998776543

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=86.52  E-value=1.2  Score=34.01  Aligned_cols=79  Identities=19%  Similarity=0.233  Sum_probs=49.2

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      +...++++||=.|++.|+   ++..++..|++|++++.+ +.++.+...+                ...+.+...|..+.
T Consensus         9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~D~~~~   72 (249)
T 3f9i_A            9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL----------------KDNYTIEVCNLANK   72 (249)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------------CSSEEEEECCTTSH
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----------------ccCccEEEcCCCCH
Confidence            456789999999987664   445556679999999974 3444333222                12567777777654


Q ss_pred             cccc---ccCCCccEEEEeccc
Q 029065          114 DHIK---AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~---~~~~~fD~Ii~~~~~  132 (199)
                      ....   ..-++.|+++.+.-+
T Consensus        73 ~~~~~~~~~~~~id~li~~Ag~   94 (249)
T 3f9i_A           73 EECSNLISKTSNLDILVCNAGI   94 (249)
T ss_dssp             HHHHHHHHTCSCCSEEEECCC-
T ss_pred             HHHHHHHHhcCCCCEEEECCCC
Confidence            3211   112478999877554

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=86.48  E-value=1.4  Score=34.52  Aligned_cols=83  Identities=18%  Similarity=0.204  Sum_probs=52.4

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=-|++.|+   ++..++..|++|+++|.+ +.++.+...+...+.          ....+.+..+|..+.+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----------~~~~~~~~~~Dv~~~~~   77 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGA----------NGGAIRYEPTDITNEDE   77 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCC----------SSCEEEEEECCTTSHHH
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----------CCceEEEEeCCCCCHHH
Confidence            4678999999987664   455566679999999974 355554444433221          12267788888876542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|+++.+.-+
T Consensus        78 v~~~~~~~~~~~g~id~lv~nAg~  101 (281)
T 3svt_A           78 TARAVDAVTAWHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCc
Confidence            21       112478999877554

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=86.46  E-value=0.58  Score=38.10  Aligned_cols=89  Identities=20%  Similarity=0.294  Sum_probs=52.9

Q ss_pred             CCCCcEEEeCC-C-cChHHHHHHh-hCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-
Q 029065           41 LKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  116 (199)
Q Consensus        41 ~~~~~VLdlGc-G-~G~~sl~la~-~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-  116 (199)
                      -+|.+||=+|+ | .|...+.+++ .|++|+++..++-++.+++    .+.               ..  .| ...+.. 
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~----lGa---------------~~--i~-~~~~~~~  206 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFATARGSDLEYVRD----LGA---------------TP--ID-ASREPED  206 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH----HTS---------------EE--EE-TTSCHHH
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHH----cCC---------------CE--ec-cCCCHHH
Confidence            35789999994 4 3777777775 4899999832444444432    231               11  22 211110 


Q ss_pred             ----cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          117 ----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       117 ----~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                          ......+|+|+-+-.       ...+....+.|+++|.+++.
T Consensus       207 ~~~~~~~~~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          207 YAAEHTAGQGFDLVYDTLG-------GPVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             HHHHHHTTSCEEEEEESSC-------THHHHHHHHHEEEEEEEEES
T ss_pred             HHHHHhcCCCceEEEECCC-------cHHHHHHHHHHhcCCeEEEE
Confidence                011247999886422       24677778889999987654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=86.36  E-value=1.4  Score=34.70  Aligned_cols=83  Identities=14%  Similarity=0.165  Sum_probs=52.2

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-h-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ..+.++++|=-|++.|+   ++..++..|++|+++|. + +.++.....+....            ...+.+..+|+.+.
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~d~   88 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS------------SGTVLHHPADMTKP   88 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC------------SSCEEEECCCTTCH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc------------CCcEEEEeCCCCCH
Confidence            34678999999987764   55566677999999986 3 34444444333221            23677778888765


Q ss_pred             cccc-------ccCCCccEEEEecccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +...       ..-++.|++|.+.-+.
T Consensus        89 ~~v~~~~~~~~~~~g~iD~lv~nAg~~  115 (281)
T 3v2h_A           89 SEIADMMAMVADRFGGADILVNNAGVQ  115 (281)
T ss_dssp             HHHHHHHHHHHHHTSSCSEEEECCCCC
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCC
Confidence            4221       1125789998876553

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=86.23  E-value=1.3  Score=34.02  Aligned_cols=78  Identities=22%  Similarity=0.312  Sum_probs=49.6

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+   +             .++.+..+|..+.+.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~~~~~   66 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---G-------------KKARAIAADISDPGS   66 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C-------------TTEEECCCCTTCHHH
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-------------CceEEEEcCCCCHHH
Confidence            4678999999987764   555666779999999974 3433333222   1             256677777765542


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|++|.+.-+.
T Consensus        67 v~~~~~~~~~~~g~id~lv~nAg~~   91 (247)
T 3rwb_A           67 VKALFAEIQALTGGIDILVNNASIV   91 (247)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCC
Confidence            21       1124799998876553

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=86.12  E-value=2  Score=33.77  Aligned_cols=81  Identities=14%  Similarity=0.053  Sum_probs=47.9

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=.|++.|+   +...++..|++|++++. .+.++.+...+...             ..++.+..+|+.+.+.
T Consensus        41 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~d~~~  107 (285)
T 2c07_A           41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF-------------GYESSGYAGDVSKKEE  107 (285)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT-------------TCCEEEEECCTTCHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc-------------CCceeEEECCCCCHHH
Confidence            3567899988876553   33444456889988885 33444433333222             2256777788765542


Q ss_pred             ccc-------cCCCccEEEEecccc
Q 029065          116 IKA-------VAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~~-------~~~~fD~Ii~~~~~~  133 (199)
                      ...       ..++.|++|.+..+.
T Consensus       108 v~~~~~~~~~~~~~id~li~~Ag~~  132 (285)
T 2c07_A          108 ISEVINKILTEHKNVDILVNNAGIT  132 (285)
T ss_dssp             HHHHHHHHHHHCSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCC
Confidence            211       125789998875543

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=86.07  E-value=1.2  Score=35.38  Aligned_cols=83  Identities=17%  Similarity=0.212  Sum_probs=52.8

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..+++++||=-|++.|+   ++..++..|++|+++|.+ +.++.+...+...+            ..++.+..+|+.+.+
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~d~~  104 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG------------AGNVIGVRLDVSDPG  104 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS------------SSCEEEEECCTTCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC------------CCcEEEEEEeCCCHH
Confidence            34678999999987664   555566779999999973 34444444332221            136788888887654


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ...       ..-++.|++|.+.-+.
T Consensus       105 ~v~~~~~~~~~~~g~iD~lvnnAg~~  130 (293)
T 3rih_A          105 SCADAARTVVDAFGALDVVCANAGIF  130 (293)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            211       1125789998876553

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=86.02  E-value=1.3  Score=34.06  Aligned_cols=78  Identities=21%  Similarity=0.197  Sum_probs=49.0

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=-|++.|+   ++..++..|++|+++|.+. .++.+...+..                ......+|..+.+.
T Consensus         6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~~~~~~Dv~d~~~   69 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD----------------NGKGMALNVTNPES   69 (248)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG----------------GEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc----------------cceEEEEeCCCHHH
Confidence            4678999999987764   5556667799999999743 44433332211                34666777765542


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|+++.+.-+.
T Consensus        70 v~~~~~~~~~~~g~iD~lv~nAg~~   94 (248)
T 3op4_A           70 IEAVLKAITDEFGGVDILVNNAGIT   94 (248)
T ss_dssp             HHHHHHHHHHHHCCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            21       1124799998876543

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=86.01  E-value=1.4  Score=35.45  Aligned_cols=90  Identities=14%  Similarity=0.109  Sum_probs=51.2

Q ss_pred             cEEEeCC-C-cChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           45 RVIELGA-G-CGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        45 ~VLdlGc-G-~G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      +||=+|+ | .|...+.+++ .|++|++++.+ +-++.+++    .+.            +.+ +..-+...........
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa------------~~v-~~~~~~~~~~~~~~~~  215 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGA------------SEV-ISREDVYDGTLKALSK  215 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTC------------SEE-EEHHHHCSSCCCSSCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC------------cEE-EECCCchHHHHHHhhc
Confidence            8999998 4 3777777775 59999999974 45555543    221            111 1110110000001112


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      +.+|+|+-+-.     .  ..+....+.++++|.+.+.
T Consensus       216 ~~~d~vid~~g-----~--~~~~~~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          216 QQWQGAVDPVG-----G--KQLASLLSKIQYGGSVAVS  246 (330)
T ss_dssp             CCEEEEEESCC-----T--HHHHHHHTTEEEEEEEEEC
T ss_pred             CCccEEEECCc-----H--HHHHHHHHhhcCCCEEEEE
Confidence            46898875421     1  3577777888999987654

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=85.96  E-value=2  Score=33.20  Aligned_cols=78  Identities=21%  Similarity=0.268  Sum_probs=49.0

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+                ...+.+..+|..+.+.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~D~~~~~~   68 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI----------------GPAAYAVQMDVTRQDS   68 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------------CTTEEEEECCTTCHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------------CCCceEEEeeCCCHHH
Confidence            3578999999987664   455566679999999973 3333332222                1246777788876542


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|+++.+.-+.
T Consensus        69 v~~~~~~~~~~~g~id~lv~~Ag~~   93 (259)
T 4e6p_A           69 IDAAIAATVEHAGGLDILVNNAALF   93 (259)
T ss_dssp             HHHHHHHHHHHSSSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcC
Confidence            21       1124799998876543

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=85.92  E-value=2.6  Score=32.03  Aligned_cols=78  Identities=22%  Similarity=0.234  Sum_probs=46.3

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      +++++||=.|++.|+   +...++..|++|++++.+ +.++.....+..              ...+.+..+|..+.+..
T Consensus         4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~D~~~~~~~   69 (251)
T 1zk4_A            4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--------------PDQIQFFQHDSSDEDGW   69 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--------------TTTEEEEECCTTCHHHH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc--------------cCceEEEECCCCCHHHH
Confidence            568889988876553   344455569999999873 333333222211              13577888888655322


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ...+++|++|.+..+
T Consensus        70 ~~~~~~~~~~~~~id~li~~Ag~   92 (251)
T 1zk4_A           70 TKLFDATEKAFGPVSTLVNNAGI   92 (251)
T ss_dssp             HHHHHHHHHHHSSCCEEEECCCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCCC
Confidence            1       011468999877544

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=85.90  E-value=1.5  Score=33.53  Aligned_cols=79  Identities=24%  Similarity=0.280  Sum_probs=47.7

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +++++||=.|++.|+   +...++..|++|++++. +. .++.+...+...+             .++.+..+|+.+.+.
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~   68 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLG-------------SDAIAVRADVANAED   68 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHH
Confidence            457888888876553   44555567999999886 43 4444433333221             256777788776542


Q ss_pred             ccc-------cCCCccEEEEeccc
Q 029065          116 IKA-------VAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~~-------~~~~fD~Ii~~~~~  132 (199)
                      ...       .-++.|++|.+.-+
T Consensus        69 ~~~~~~~~~~~~g~id~lv~nAg~   92 (246)
T 2uvd_A           69 VTNMVKQTVDVFGQVDILVNNAGV   92 (246)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            210       11478999877554

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=85.86  E-value=1.2  Score=35.85  Aligned_cols=82  Identities=18%  Similarity=0.227  Sum_probs=51.6

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-----------hHHHHHHHHHHHhhhccccCCCCCCCCCcEE
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-----------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ  104 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-----------~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~  104 (199)
                      ..+++++||=.|++.|+   ++..++..|++|+++|.+           +.++.+...+...+             .++.
T Consensus        23 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~   89 (322)
T 3qlj_A           23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG-------------GEAV   89 (322)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT-------------CEEE
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcC-------------CcEE
Confidence            45688999999987664   455566779999999853           24444444443332             3567


Q ss_pred             EEEeeeCCCcccc-------ccCCCccEEEEecccc
Q 029065          105 AVELDWGNEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       105 ~~~~d~~~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +..+|..+.+...       ..-++.|++|.+.-+.
T Consensus        90 ~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~  125 (322)
T 3qlj_A           90 ADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIV  125 (322)
T ss_dssp             EECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCCCC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            7777876553221       1124789998776553

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=85.70  E-value=1.2  Score=35.87  Aligned_cols=87  Identities=14%  Similarity=0.105  Sum_probs=50.3

Q ss_pred             cEEEeCC-C-cChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC--cc-cc
Q 029065           45 RVIELGA-G-CGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE--DH-IK  117 (199)
Q Consensus        45 ~VLdlGc-G-~G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~-~~  117 (199)
                      +||=+|+ | .|...+.+++ .|++|++++.+ +-++.+++    .+..            .+    +|..+.  .. ..
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~------------~~----i~~~~~~~~~~~~  211 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAK------------EV----LAREDVMAERIRP  211 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCS------------EE----EECC---------
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCc------------EE----EecCCcHHHHHHH
Confidence            7999997 4 4777777775 58899999974 45555543    2211            11    111111  00 01


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      ...+.+|+|+-+-.     .  ..+....+.++++|.+.+.
T Consensus       212 ~~~~~~d~vid~~g-----~--~~~~~~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          212 LDKQRWAAAVDPVG-----G--RTLATVLSRMRYGGAVAVS  245 (328)
T ss_dssp             CCSCCEEEEEECST-----T--TTHHHHHHTEEEEEEEEEC
T ss_pred             hcCCcccEEEECCc-----H--HHHHHHHHhhccCCEEEEE
Confidence            11246998875421     1  2466777888999987664

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=85.65  E-value=0.23  Score=40.79  Aligned_cols=91  Identities=21%  Similarity=0.243  Sum_probs=52.7

Q ss_pred             CCCCcEEEeCC-C-cChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGc-G-~G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      -+|++||-.|+ | .|...+.+++ .|++|+++|.+ +-++.+++    .+.             . .  .+|..+.+..
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga-------------~-~--~~d~~~~~~~  228 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGA-------------H-E--VFNHREVNYI  228 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC-------------S-E--EEETTSTTHH
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH----cCC-------------C-E--EEeCCCchHH
Confidence            35789999997 3 4666655554 58999999974 34444322    221             1 1  1233222110


Q ss_pred             ----c-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          117 ----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       117 ----~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                          . .....+|+++-+-.       ...+....+.++++|.+++.
T Consensus       229 ~~~~~~~~~~~~D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          229 DKIKKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             HHHHHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHcCCCCcEEEEECCC-------hHHHHHHHHhccCCCEEEEE
Confidence                0 11237999986532       13466677888999887654

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=85.54  E-value=2.1  Score=33.85  Aligned_cols=62  Identities=16%  Similarity=0.061  Sum_probs=39.4

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEee-ch-hHHHHHHHHHH-HhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTD-QI-EVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D-~~-~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      .++++++|=.|++.|+   ++..++..|++|++++ .+ +.++.+...+. ..             ..++.+..+|+.+.
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~Dl~~~   72 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-------------PNSAITVQADLSNV   72 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-------------TTCEEEEECCCSSS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhc-------------CCeeEEEEeecCCc
Confidence            3568899988887664   4455556799999999 64 34444444443 22             12567778888765


Q ss_pred             c
Q 029065          114 D  114 (199)
Q Consensus       114 ~  114 (199)
                      .
T Consensus        73 ~   73 (291)
T 1e7w_A           73 A   73 (291)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=85.43  E-value=1.5  Score=34.34  Aligned_cols=82  Identities=21%  Similarity=0.179  Sum_probs=49.4

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+...+.          ...++.+..+|+.+.+..
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v   73 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV----------SEKQVNSVVADVTTEDGQ   73 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC----------CGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC----------CCcceEEEEecCCCHHHH
Confidence            568889988887653   445555679999999973 344444433332210          011567788888765422


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ..-++.|++|.+.-+
T Consensus        74 ~~~~~~~~~~~g~iD~lv~nAg~   96 (280)
T 1xkq_A           74 DQIINSTLKQFGKIDVLVNNAGA   96 (280)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCC
Confidence            1       012478999887544

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=85.34  E-value=3.4  Score=31.69  Aligned_cols=78  Identities=17%  Similarity=0.165  Sum_probs=45.2

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      +++++||=.|++.|+   +...++..|++|+++|.+.. +.....+...             ..++.+..+|+.+.+...
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~l~~~-------------~~~~~~~~~D~~~~~~v~   67 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP-APALAEIARH-------------GVKAVHHPADLSDVAQIE   67 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHHHHHTT-------------SCCEEEECCCTTSHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch-HHHHHHHHhc-------------CCceEEEeCCCCCHHHHH
Confidence            467889988876553   44455567999999986322 2222222211             125667777776553221


Q ss_pred             c-------cCCCccEEEEeccc
Q 029065          118 A-------VAPPFDYIIGTDVV  132 (199)
Q Consensus       118 ~-------~~~~fD~Ii~~~~~  132 (199)
                      .       .-++.|+++.+.-+
T Consensus        68 ~~~~~~~~~~g~id~lv~~Ag~   89 (255)
T 2q2v_A           68 ALFALAEREFGGVDILVNNAGI   89 (255)
T ss_dssp             HHHHHHHHHHSSCSEEEECCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCC
Confidence            1       01478999877544

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=85.30  E-value=1.7  Score=33.23  Aligned_cols=80  Identities=23%  Similarity=0.194  Sum_probs=47.8

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec--hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +++++||=.|++.|+   ++..++..|++|+.++.  .+.++.....+...+             ..+.+...|..+...
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~   71 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNG-------------GSAFSIGANLESLHG   71 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTT-------------CEEEEEECCTTSHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcC-------------CceEEEecCcCCHHH
Confidence            578899999987764   45555667999888753  334444444343332             256677777765432


Q ss_pred             ccc-------------cCCCccEEEEecccc
Q 029065          116 IKA-------------VAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~~-------------~~~~fD~Ii~~~~~~  133 (199)
                      ...             ..++.|++|.+.-+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~id~lv~nAg~~  102 (255)
T 3icc_A           72 VEALYSSLDNELQNRTGSTKFDILINNAGIG  102 (255)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCEEEEEECCCCC
T ss_pred             HHHHHHHHHHHhcccccCCcccEEEECCCCC
Confidence            110             013589998876543

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=84.87  E-value=3  Score=31.95  Aligned_cols=87  Identities=18%  Similarity=0.144  Sum_probs=47.6

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCe-EEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC-cc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~-v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~  115 (199)
                      +++++||=.|++.|+   +...++..|++ |++++.+...+.+. .+....           ....+.+..+|..+. +.
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~-~l~~~~-----------~~~~~~~~~~D~~~~~~~   70 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA-ELKAIN-----------PKVNITFHTYDVTVPVAE   70 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH-HHHHHC-----------TTSEEEEEECCTTSCHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHH-HHHHhC-----------CCceEEEEEEecCCChHH
Confidence            468899999875443   33444456986 88888632111111 111110           012567778888765 32


Q ss_pred             cc-------ccCCCccEEEEeccccCCcChH
Q 029065          116 IK-------AVAPPFDYIIGTDVVYAEHLLE  139 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~~~~~~~  139 (199)
                      ..       ..-++.|++|.+.-+.....+.
T Consensus        71 ~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~  101 (254)
T 1sby_A           71 SKKLLKKIFDQLKTVDILINGAGILDDHQIE  101 (254)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCTTCHH
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccCCHHHHh
Confidence            11       0114789999876654444433

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=84.85  E-value=1.8  Score=34.09  Aligned_cols=83  Identities=20%  Similarity=0.321  Sum_probs=50.7

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      +..+++++||=.|++.|+   +...++..|++|+++|.+ +.++.+...+....            ..++.+..+|+.+.
T Consensus        21 ~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~   88 (302)
T 1w6u_A           21 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT------------GNKVHAIQCDVRDP   88 (302)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTTCH
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCceEEEEeCCCCH
Confidence            445788999999986553   444455669999999973 34444333332221            12577888888765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      +...       ...+++|++|.+..+
T Consensus        89 ~~~~~~~~~~~~~~g~id~li~~Ag~  114 (302)
T 1w6u_A           89 DMVQNTVSELIKVAGHPNIVINNAAG  114 (302)
T ss_dssp             HHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            3221       113478999877554

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=84.82  E-value=0.69  Score=37.65  Aligned_cols=43  Identities=12%  Similarity=0.014  Sum_probs=32.5

Q ss_pred             CCCccEEEEeccccCC-------c----ChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAE-------H----LLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~-------~----~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      .++||+|++.+|+...       .    ....++..+.++|+|+|.+++....+
T Consensus        56 ~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~  109 (319)
T 1eg2_A           56 DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ  109 (319)
T ss_dssp             TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred             cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence            4689999999886532       1    34566777889999999998876543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=84.74  E-value=0.95  Score=37.44  Aligned_cols=40  Identities=25%  Similarity=0.258  Sum_probs=26.3

Q ss_pred             CCCCCcEEEeCCCc-ChHH-HHHHhhCCeEEEeech-hHHHHH
Q 029065           40 KLKGKRVIELGAGC-GVAG-FGMALLGCNVITTDQI-EVLPLL   79 (199)
Q Consensus        40 ~~~~~~VLdlGcG~-G~~s-l~la~~g~~v~~~D~~-~~l~~a   79 (199)
                      .+++++|+=+|+|. |... ..+...|++|+++|.+ +.++.+
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~  205 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYL  205 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            46789999999953 4322 2233459999999974 344444

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=84.69  E-value=1.4  Score=35.90  Aligned_cols=43  Identities=21%  Similarity=0.127  Sum_probs=32.8

Q ss_pred             CCcEEEeCCCc-Ch-HHHHHHhhCCeEEEeec-hhHHHHHHHHHHH
Q 029065           43 GKRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEW   85 (199)
Q Consensus        43 ~~~VLdlGcG~-G~-~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~   85 (199)
                      -.+|.=||+|+ |. ++..+|..|.+|+..|. ++.++.+..++..
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~   51 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRK   51 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHH
Confidence            35788999997 53 67788888999999998 4477777666643

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=84.58  E-value=1.2  Score=34.03  Aligned_cols=79  Identities=19%  Similarity=0.183  Sum_probs=47.1

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-h-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +++++||=.|++.|+   +...++..|++|++++.+ . .++.+...+...+             .++.+..+|+.+.+.
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~   71 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADG-------------GDAAFFAADLATSEA   71 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTT-------------CEEEEEECCTTSHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcC-------------CceEEEECCCCCHHH
Confidence            467889977775443   334444569999999864 3 4444444333322             257778888876542


Q ss_pred             cccc-------CCCccEEEEeccc
Q 029065          116 IKAV-------APPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~~~-------~~~fD~Ii~~~~~  132 (199)
                      ....       -++.|++|.+..+
T Consensus        72 ~~~~~~~~~~~~g~id~vi~~Ag~   95 (258)
T 3afn_B           72 CQQLVDEFVAKFGGIDVLINNAGG   95 (258)
T ss_dssp             HHHHHHHHHHHHSSCSEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            2111       1378999877554

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=84.55  E-value=1.7  Score=38.96  Aligned_cols=59  Identities=15%  Similarity=0.167  Sum_probs=34.9

Q ss_pred             CCCccEEEEeccc--cCCcC-hHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH-HhCCeEEEec
Q 029065          120 APPFDYIIGTDVV--YAEHL-LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP  184 (199)
Q Consensus       120 ~~~fD~Ii~~~~~--~~~~~-~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~-~~~~~v~~~~  184 (199)
                      ...+|.++..+.-  .++++ -..++..+.+++++|+.+. ++.. ..    ...+.+ ..+|.+..+.
T Consensus       169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~-t~~~-~~----~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFS-TFTA-AG----FVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEE-ESCC-CH----HHHHHHHHTTCEEEEEE
T ss_pred             CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEE-eccC-cH----HHHHHHHhCCeEEEecc
Confidence            3679999885411  12233 3678899999999988743 2222 12    122222 4688887765

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=84.49  E-value=11  Score=29.56  Aligned_cols=82  Identities=17%  Similarity=0.105  Sum_probs=46.6

Q ss_pred             CCCCCCCcEEEeCCCcChHHHHHH----hhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEE-EeeeC
Q 029065           38 PSKLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-ELDWG  111 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~~sl~la----~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~d~~  111 (199)
                      +...++++||=.|+. |.+|..++    ..|.+|++++.+ ...+.....+....            ...+.+. ..|+.
T Consensus         6 ~~~~~~~~vlVTGat-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~~   72 (342)
T 1y1p_A            6 AVLPEGSLVLVTGAN-GFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY------------PGRFETAVVEDML   72 (342)
T ss_dssp             CSSCTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS------------TTTEEEEECSCTT
T ss_pred             ccCCCCCEEEEECCc-cHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC------------CCceEEEEecCCc
Confidence            344578899988763 44454444    458999999863 33333322221110            1256666 67876


Q ss_pred             CCccccccCCCccEEEEeccc
Q 029065          112 NEDHIKAVAPPFDYIIGTDVV  132 (199)
Q Consensus       112 ~~~~~~~~~~~fD~Ii~~~~~  132 (199)
                      +.......-..+|+|+-+...
T Consensus        73 d~~~~~~~~~~~d~vih~A~~   93 (342)
T 1y1p_A           73 KQGAYDEVIKGAAGVAHIASV   93 (342)
T ss_dssp             STTTTTTTTTTCSEEEECCCC
T ss_pred             ChHHHHHHHcCCCEEEEeCCC
Confidence            654433223478999876544

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=84.36  E-value=2.1  Score=33.78  Aligned_cols=88  Identities=17%  Similarity=0.267  Sum_probs=51.8

Q ss_pred             CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      .+..+++++||=.|++.|+   +...++..|++|++++.+ +.++.+...+......        ....++.+..+|+.+
T Consensus        12 ~~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~D~~~   83 (303)
T 1yxm_A           12 APGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP--------TKQARVIPIQCNIRN   83 (303)
T ss_dssp             CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT--------TCCCCEEEEECCTTC
T ss_pred             CcCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccc--------cCCccEEEEecCCCC
Confidence            4556788999999976553   344445569999999873 3444444444321000        002367888888876


Q ss_pred             Cccccc-------cCCCccEEEEeccc
Q 029065          113 EDHIKA-------VAPPFDYIIGTDVV  132 (199)
Q Consensus       113 ~~~~~~-------~~~~fD~Ii~~~~~  132 (199)
                      ......       .-++.|++|.+.-+
T Consensus        84 ~~~v~~~~~~~~~~~g~id~li~~Ag~  110 (303)
T 1yxm_A           84 EEEVNNLVKSTLDTFGKINFLVNNGGG  110 (303)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            542211       11468999877543

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=84.36  E-value=2.7  Score=32.39  Aligned_cols=78  Identities=15%  Similarity=0.133  Sum_probs=47.4

Q ss_pred             CCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-H--HHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           43 GKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-V--LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        43 ~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~--l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++++|=.|++.|+   +...++..|++|+++|.+. .  ++.+...+...             ..++.+..+|+.+.+..
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~v   68 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA-------------DQKAVFVGLDVTDKANF   68 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT-------------TCCEEEEECCTTCHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHH
Confidence            5778888887653   4455566799999998743 3  44433333222             23577778888765422


Q ss_pred             cc-------cCCCccEEEEecccc
Q 029065          117 KA-------VAPPFDYIIGTDVVY  133 (199)
Q Consensus       117 ~~-------~~~~fD~Ii~~~~~~  133 (199)
                      ..       .-++.|++|.+.-+.
T Consensus        69 ~~~~~~~~~~~g~iD~lv~nAg~~   92 (258)
T 3a28_C           69 DSAIDEAAEKLGGFDVLVNNAGIA   92 (258)
T ss_dssp             HHHHHHHHHHHTCCCEEEECCCCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCC
Confidence            10       124789998875543

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=84.29  E-value=2.5  Score=32.73  Aligned_cols=80  Identities=15%  Similarity=0.099  Sum_probs=48.2

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-h-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ..+++||=.|++.|+   ++..++..|++|+.++. + +..+.+...+...             ..++.+..+|+.+.+.
T Consensus        24 l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~   90 (267)
T 4iiu_A           24 AMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVAN-------------GGNGRLLSFDVANREQ   90 (267)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-------------CCceEEEEecCCCHHH
Confidence            567899999987664   45555667999866653 3 3344443333333             2367888888876542


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ...++.|++|.+.-+.
T Consensus        91 ~~~~~~~~~~~~g~id~li~nAg~~  115 (267)
T 4iiu_A           91 CREVLEHEIAQHGAWYGVVSNAGIA  115 (267)
T ss_dssp             HHHHHHHHHHHHCCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCccEEEECCCCC
Confidence            21       1124789998775543

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=84.20  E-value=3.1  Score=32.87  Aligned_cols=79  Identities=10%  Similarity=0.132  Sum_probs=44.6

Q ss_pred             CCCCCcEEEeCCCcC---hHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCG---VAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G---~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=+|+..|   .+...++..|++|+.++.+ +-.+...+.+....              .+.+...|+.+.+.
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~--------------~~~~~~~D~~~~~~  181 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--------------KVNVTAAETADDAS  181 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--------------TCCCEEEECCSHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEecCCCHHH
Confidence            367899999995433   2455566779999999873 33332322222211              22344566654432


Q ss_pred             ccccCCCccEEEEeccc
Q 029065          116 IKAVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~  132 (199)
                      ....-..+|+||.+...
T Consensus       182 ~~~~~~~~DvlVn~ag~  198 (287)
T 1lu9_A          182 RAEAVKGAHFVFTAGAI  198 (287)
T ss_dssp             HHHHTTTCSEEEECCCT
T ss_pred             HHHHHHhCCEEEECCCc
Confidence            22223458999887653

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=84.11  E-value=2.4  Score=32.08  Aligned_cols=80  Identities=20%  Similarity=0.251  Sum_probs=47.2

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      +++++||=.|++.|+   +...++..|++|++++.+ +.++.....+....            ...+.+..+|+.+.+..
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~~~   72 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY------------GVKAHGVEMNLLSEESI   72 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH------------CCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc------------CCceEEEEccCCCHHHH
Confidence            567889988876543   334444569999999873 34444433332211            12567777787655322


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ...++.|+++.+..+
T Consensus        73 ~~~~~~~~~~~~~~d~vi~~Ag~   95 (248)
T 2pnf_A           73 NKAFEEIYNLVDGIDILVNNAGI   95 (248)
T ss_dssp             HHHHHHHHHHSSCCSEEEECCCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCC
Confidence            1       112478999877544

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=84.07  E-value=3.8  Score=31.78  Aligned_cols=81  Identities=15%  Similarity=0.068  Sum_probs=49.2

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++++||=.|++.|+   +...++..|++|+++|.+ +.++.+...+...+             .++.+..+|+.+.+.
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~   97 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYG-------------VHSKAYKCNISDPKS   97 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHC-------------SCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcceEEEeecCCHHH
Confidence            3678999999987664   445555679999999863 33333333332221             256777788765532


Q ss_pred             ccc-------cCCCccEEEEecccc
Q 029065          116 IKA-------VAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~~-------~~~~fD~Ii~~~~~~  133 (199)
                      ...       .-+++|++|.+..+.
T Consensus        98 ~~~~~~~~~~~~g~id~li~~Ag~~  122 (279)
T 3ctm_A           98 VEETISQQEKDFGTIDVFVANAGVT  122 (279)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECGGGS
T ss_pred             HHHHHHHHHHHhCCCCEEEECCccc
Confidence            210       114689998875543

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=84.04  E-value=2.8  Score=34.82  Aligned_cols=108  Identities=13%  Similarity=0.132  Sum_probs=65.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      .+.+||.++-+.|.+++.++. +.+|+.+..+..-..+   ++.|+..            . .. ...|      .....
T Consensus        45 ~~~~~l~~n~~~g~~~~~~~~-~~~~~~~~~~~~~~~~---l~~~~~~------------~-~~-~~~~------~~~~~  100 (381)
T 3dmg_A           45 FGERALDLNPGVGWGSLPLEG-RMAVERLETSRAAFRC---LTASGLQ------------A-RL-ALPW------EAAAG  100 (381)
T ss_dssp             CSSEEEESSCTTSTTTGGGBT-TBEEEEEECBHHHHHH---HHHTTCC------------C-EE-CCGG------GSCTT
T ss_pred             hCCcEEEecCCCCccccccCC-CCceEEEeCcHHHHHH---HHHcCCC------------c-cc-cCCc------cCCcC
Confidence            346899999999987777643 3667666433211111   5666642            1 11 1111      12356


Q ss_pred             CccEEEEeccccC-CcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH
Q 029065          122 PFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  175 (199)
Q Consensus       122 ~fD~Ii~~~~~~~-~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~  175 (199)
                      .||+|+.--+-.- .......+..+...|++||.++++...+..  .+++.+.+.
T Consensus       101 ~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g--~~~~~~~~~  153 (381)
T 3dmg_A          101 AYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNKG--FERYFKEAR  153 (381)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGGT--HHHHHHHHH
T ss_pred             CCCEEEEECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEccHHH--HHHHHHHHH
Confidence            8999887533211 123567788888889999999999887654  355555543

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=83.96  E-value=2.1  Score=32.91  Aligned_cols=79  Identities=20%  Similarity=0.217  Sum_probs=50.4

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..+++++||=.|++.|+   ++..++..|++|+++|.+ +.++.+...+                ...+.+..+|+.+.+
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~D~~~~~   68 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI----------------GDAALAVAADISKEA   68 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------------CTTEEEEECCTTSHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----------------CCceEEEEecCCCHH
Confidence            34678999999998764   556666779999999974 3444333321                125677788886654


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ...       ...++.|++|.+.-+.
T Consensus        69 ~~~~~~~~~~~~~g~id~li~~Ag~~   94 (261)
T 3n74_A           69 DVDAAVEAALSKFGKVDILVNNAGIG   94 (261)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCccC
Confidence            221       1124789998875543

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=83.86  E-value=2.7  Score=32.51  Aligned_cols=80  Identities=23%  Similarity=0.214  Sum_probs=44.2

Q ss_pred             CCCCcEEEeCCC--cCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG--~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +++++||=.|++  .|+   ++..++..|++|+++|.+...+...+.+....             ....+..+|+.+.+.
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~-------------~~~~~~~~D~~~~~~   73 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL-------------GSDIVLQCDVAEDAS   73 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT-------------TCCCEEECCTTCHHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhc-------------CCcEEEEccCCCHHH
Confidence            568899999986  443   44445566999999986431111112221111             122556677765532


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|++|.+.-+.
T Consensus        74 v~~~~~~~~~~~g~iD~lv~~Ag~~   98 (265)
T 1qsg_A           74 IDTMFAELGKVWPKFDGFVHSIGFA   98 (265)
T ss_dssp             HHHHHHHHHTTCSSEEEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            11       1124789998876543

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=83.84  E-value=2.7  Score=33.96  Aligned_cols=61  Identities=16%  Similarity=0.064  Sum_probs=39.2

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEee-ch-hHHHHHHHHHH-HhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTD-QI-EVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D-~~-~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      +++++||=.|++.|+   ++..++..|++|++++ .+ +.++.+...+. ..             ..++.+..+|+.+..
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~Dl~d~~  110 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-------------PNSAITVQADLSNVA  110 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-------------TTCEEEEECCCSSSC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-------------CCeEEEEEeeCCCch
Confidence            678899988887654   4455556799999999 64 34444444433 21             125777788887654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=83.76  E-value=1.5  Score=34.43  Aligned_cols=79  Identities=22%  Similarity=0.218  Sum_probs=47.1

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      .....++++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+   +             .++.+..+|+.+.
T Consensus        23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~d~   86 (272)
T 4dyv_A           23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI---G-------------DDALCVPTDVTDP   86 (272)
T ss_dssp             -----CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---T-------------SCCEEEECCTTSH
T ss_pred             hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C-------------CCeEEEEecCCCH
Confidence            345678899988887664   455566779999999973 3444333322   1             2567777888765


Q ss_pred             cccc-------ccCCCccEEEEeccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      +...       ..-++.|++|.+.-+
T Consensus        87 ~~v~~~~~~~~~~~g~iD~lVnnAg~  112 (272)
T 4dyv_A           87 DSVRALFTATVEKFGRVDVLFNNAGT  112 (272)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            4221       112479999887554

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=83.67  E-value=1.6  Score=33.77  Aligned_cols=80  Identities=19%  Similarity=0.268  Sum_probs=47.2

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..+++++||=.|++.|+   +...++..|++|+++|.+. ..+.....+  ..            ...+.+..+|..+..
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~------------~~~~~~~~~D~~~~~   77 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI--GS------------PDVISFVHCDVTKDE   77 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CC------------TTTEEEEECCTTCHH
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHh--CC------------CCceEEEECCCCCHH
Confidence            34578999988886553   3444556699999998733 333222221  10            125778888887654


Q ss_pred             ccccc-------CCCccEEEEeccc
Q 029065          115 HIKAV-------APPFDYIIGTDVV  132 (199)
Q Consensus       115 ~~~~~-------~~~fD~Ii~~~~~  132 (199)
                      .....       .++.|++|.+.-+
T Consensus        78 ~~~~~~~~~~~~~~~id~li~~Ag~  102 (278)
T 2bgk_A           78 DVRNLVDTTIAKHGKLDIMFGNVGV  102 (278)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcc
Confidence            22111       1478999876543

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=83.57  E-value=1.7  Score=33.32  Aligned_cols=79  Identities=20%  Similarity=0.184  Sum_probs=46.8

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +++++||=.|+..|+   +...++..|++|++++. +. .++.+...+...             ...+.+..+|+.+.+.
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~   71 (261)
T 1gee_A            5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV-------------GGEAIAVKGDVTVESD   71 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------TCEEEEEECCTTSHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc-------------CCceEEEECCCCCHHH
Confidence            567889988876543   33444556999999986 43 344333333322             1256777788765532


Q ss_pred             ccc-------cCCCccEEEEeccc
Q 029065          116 IKA-------VAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~~-------~~~~fD~Ii~~~~~  132 (199)
                      ...       ..++.|++|.+.-+
T Consensus        72 ~~~~~~~~~~~~g~id~li~~Ag~   95 (261)
T 1gee_A           72 VINLVQSAIKEFGKLDVMINNAGL   95 (261)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            210       11378999877544

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=83.42  E-value=0.31  Score=39.99  Aligned_cols=92  Identities=14%  Similarity=0.131  Sum_probs=52.6

Q ss_pred             CCCCcEEEeCC--CcChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-
Q 029065           41 LKGKRVIELGA--GCGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  115 (199)
Q Consensus        41 ~~~~~VLdlGc--G~G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-  115 (199)
                      -+|++||-.|+  |.|...+.+++ .|++|+++|.+ +-++.+++    .+.             ..   .+|..+.+. 
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~g~-------------~~---~~~~~~~~~~  220 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEK----LGA-------------AA---GFNYKKEDFS  220 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HTC-------------SE---EEETTTSCHH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC-------------cE---EEecCChHHH
Confidence            35789999995  34666655554 58999999974 45555522    121             11   123322211 


Q ss_pred             --c-c-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 --I-K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 --~-~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                        . . .....+|+++-+-.-       ..+....+.|+++|.+++..
T Consensus       221 ~~~~~~~~~~~~d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          221 EATLKFTKGAGVNLILDCIGG-------SYWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             HHHHHHTTTSCEEEEEESSCG-------GGHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHhcCCCceEEEECCCc-------hHHHHHHHhccCCCEEEEEe
Confidence              0 0 112469998865321       24566678889999876643

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=83.40  E-value=2.2  Score=32.70  Aligned_cols=79  Identities=16%  Similarity=0.192  Sum_probs=48.9

Q ss_pred             CCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-h-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           42 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++++|=-|++.|+   ++..++..|++|+.+|. + +.++.+.+.+...+             .++.+..+|..+.+..
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~d~~~v   69 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKG-------------VDSFAIQANVADADEV   69 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------SCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHHH
Confidence            46788888877654   44555667999988875 3 34444444443332             3567778888765422


Q ss_pred             c-------ccCCCccEEEEecccc
Q 029065          117 K-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~~  133 (199)
                      .       ..-++.|+++.+.-+.
T Consensus        70 ~~~~~~~~~~~g~id~lv~nAg~~   93 (246)
T 3osu_A           70 KAMIKEVVSQFGSLDVLVNNAGIT   93 (246)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCC
Confidence            1       1124789998876553

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=83.26  E-value=2.6  Score=32.78  Aligned_cols=80  Identities=13%  Similarity=0.085  Sum_probs=47.3

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC--
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE--  113 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~--  113 (199)
                      .+++++|=.|++.|+   +...++..|++|+++|. +. .++.+...+....            ..++.+..+|+.+.  
T Consensus         9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------------~~~~~~~~~Dl~~~~~   76 (276)
T 1mxh_A            9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAAR------------AGSAVLCKGDLSLSSS   76 (276)
T ss_dssp             --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS------------TTCEEEEECCCSSSTT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhc------------CCceEEEeccCCCccc
Confidence            467889988876653   44455566999999987 54 4444443333220            12567778888766  


Q ss_pred             --cccc-------ccCCCccEEEEeccc
Q 029065          114 --DHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 --~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                        ....       ..-++.|++|.+.-+
T Consensus        77 ~~~~~~~~~~~~~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           77 LLDCCEDIIDCSFRAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             cHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence              3221       011478999887554

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=83.20  E-value=1.5  Score=36.11  Aligned_cols=41  Identities=37%  Similarity=0.440  Sum_probs=28.1

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHH-hhCCeEEEeech-hHHHHHHH
Q 029065           41 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQI-EVLPLLKR   81 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la-~~g~~v~~~D~~-~~l~~a~~   81 (199)
                      +++++||=+|+|. |.....++ ..|++|+++|.+ +-++.++.
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~  208 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLET  208 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH
Confidence            5678999999964 55444444 458999999984 45555443

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=82.88  E-value=1.5  Score=34.19  Aligned_cols=78  Identities=22%  Similarity=0.167  Sum_probs=49.6

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++++++|=-|++.|+   ++..++..|++|+++|.+. .++.+...+   +             ..+.+..+|..+...
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~~~~~   71 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV---G-------------RGAVHHVVDLTNEVS   71 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH---C-------------TTCEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---C-------------CCeEEEECCCCCHHH
Confidence            4678999999987764   5556667799999999743 444333322   1             145667778765532


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|+++.+.-+.
T Consensus        72 v~~~~~~~~~~~g~id~lv~nAg~~   96 (271)
T 3tzq_B           72 VRALIDFTIDTFGRLDIVDNNAAHS   96 (271)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            21       1124789998876554

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=82.88  E-value=2  Score=33.87  Aligned_cols=81  Identities=19%  Similarity=0.209  Sum_probs=51.5

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-h-------HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEe
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E-------VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL  108 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~-------~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  108 (199)
                      .++++++|=.|++.|+   ++..++..|++|++++.+ +       .++.+...+...+             .++.+..+
T Consensus         6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~   72 (285)
T 3sc4_A            6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG-------------GQALPIVG   72 (285)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT-------------SEEEEEEC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC-------------CcEEEEEC
Confidence            4678999999988764   555566679999999863 2       2344444343332             35778888


Q ss_pred             eeCCCcccc-------ccCCCccEEEEecccc
Q 029065          109 DWGNEDHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       109 d~~~~~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      |+.+.+...       ..-++.|++|.+.-+.
T Consensus        73 Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~  104 (285)
T 3sc4_A           73 DIRDGDAVAAAVAKTVEQFGGIDICVNNASAI  104 (285)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            887654221       1124799998876553

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=82.87  E-value=1.1  Score=40.83  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=31.0

Q ss_pred             CcEEEeCCCcChHHHHHHhhC------Ce-EEEeechh-HHHHHHHH
Q 029065           44 KRVIELGAGCGVAGFGMALLG------CN-VITTDQIE-VLPLLKRN   82 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g------~~-v~~~D~~~-~l~~a~~~   82 (199)
                      .+|+||.||+|-+++.+...|      .+ +.++|.++ +++.-+.|
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~N  259 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYN  259 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHH
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHH
Confidence            489999999998888887766      34 78889854 77777766

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=82.78  E-value=1.7  Score=33.86  Aligned_cols=82  Identities=16%  Similarity=0.126  Sum_probs=48.0

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      +++++||=.|++.|+   +...++..|++|++++.+ +.++.+...+.....          ...++.+..+|+.+.+..
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~~   73 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV----------SEQNVNSVVADVTTDAGQ   73 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----------CGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccc----------CCCceeEEecccCCHHHH
Confidence            567889988887653   445555679999999873 344444333311110          012567778888755422


Q ss_pred             cc-------cCCCccEEEEeccc
Q 029065          117 KA-------VAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~~-------~~~~fD~Ii~~~~~  132 (199)
                      ..       .-++.|++|.+.-+
T Consensus        74 ~~~~~~~~~~~g~id~lv~~Ag~   96 (278)
T 1spx_A           74 DEILSTTLGKFGKLDILVNNAGA   96 (278)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC-
T ss_pred             HHHHHHHHHHcCCCCEEEECCCC
Confidence            11       11478999877544

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=82.76  E-value=1.2  Score=36.24  Aligned_cols=88  Identities=18%  Similarity=0.123  Sum_probs=52.9

Q ss_pred             CCCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           40 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .-+|.+||=+|+|. |...+.+|+ .|++|+++|.+ +-++.+++    .+.            +.+.      .+.+. 
T Consensus       174 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~~v~------~~~~~-  230 (348)
T 3two_A          174 VTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGV------------KHFY------TDPKQ-  230 (348)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTC------------SEEE------SSGGG-
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCC------------Ceec------CCHHH-
Confidence            34688999999975 777777775 48999999974 35555543    231            1111      11111 


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                        ....+|+|+-.-.  ..    ..+....+.|+++|.+.+.
T Consensus       231 --~~~~~D~vid~~g--~~----~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          231 --CKEELDFIISTIP--TH----YDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             --CCSCEEEEEECCC--SC----CCHHHHHTTEEEEEEEEEC
T ss_pred             --HhcCCCEEEECCC--cH----HHHHHHHHHHhcCCEEEEE
Confidence              1227888875321  11    2455666778888876654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=82.68  E-value=4.9  Score=31.71  Aligned_cols=82  Identities=20%  Similarity=0.274  Sum_probs=51.9

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCC---eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCC
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGC---NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  112 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~---~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~  112 (199)
                      .++++++|=.|++.|+   ++..++..|+   +|++++.+ +.++.+...+.....           ..++.+..+|+.+
T Consensus        30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dv~d   98 (287)
T 3rku_A           30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFP-----------NAKVHVAQLDITQ   98 (287)
T ss_dssp             HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCT-----------TCEEEEEECCTTC
T ss_pred             hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCC-----------CCeEEEEECCCCC
Confidence            4578999999987764   3444555677   89999873 455555554443210           2357788888876


Q ss_pred             Ccccc-------ccCCCccEEEEeccc
Q 029065          113 EDHIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       113 ~~~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      .+...       ..-++.|++|.+.-+
T Consensus        99 ~~~v~~~~~~~~~~~g~iD~lVnnAG~  125 (287)
T 3rku_A           99 AEKIKPFIENLPQEFKDIDILVNNAGK  125 (287)
T ss_dssp             GGGHHHHHHTSCGGGCSCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence            64321       112479999987554

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=82.63  E-value=2.4  Score=33.03  Aligned_cols=79  Identities=15%  Similarity=0.158  Sum_probs=49.9

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..+++++||=.|++.|+   ++..++..|++|+++|.+ +.++.+...   .             ...+.+..+|..+..
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~---~-------------~~~~~~~~~Dv~d~~   86 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAAD---L-------------GKDVFVFSANLSDRK   86 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---H-------------CSSEEEEECCTTSHH
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---h-------------CCceEEEEeecCCHH
Confidence            45679999999987764   455566679999999873 343333221   1             125677788887654


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ...       ..-++.|++|.+.-+.
T Consensus        87 ~v~~~~~~~~~~~g~iD~lvnnAg~~  112 (266)
T 3grp_A           87 SIKQLAEVAEREMEGIDILVNNAGIT  112 (266)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence            221       1124789998776543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=82.59  E-value=2.7  Score=34.14  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=24.8

Q ss_pred             CCCCCCcEEEeCCCc-C-hHHHHHHhhCC-eEEEeech
Q 029065           39 SKLKGKRVIELGAGC-G-VAGFGMALLGC-NVITTDQI   73 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~-G-~~sl~la~~g~-~v~~~D~~   73 (199)
                      ..+++++||=+|+|- | .....++..|+ +|+.++.+
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            456899999999972 2 24455667798 68888754

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=82.58  E-value=4.2  Score=31.76  Aligned_cols=79  Identities=16%  Similarity=0.183  Sum_probs=47.1

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ...+ +++|=.|++.|+   ++..++..|++|+++|.+ +.++.+...+..              ...+.+..+|+.+.+
T Consensus        18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~d~~   82 (272)
T 2nwq_A           18 SHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSA--------------KTRVLPLTLDVRDRA   82 (272)
T ss_dssp             ---C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTT--------------TSCEEEEECCTTCHH
T ss_pred             CCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhc--------------CCcEEEEEcCCCCHH
Confidence            3445 789988987664   556666779999999974 344433332211              125677788887654


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ...       ..-++.|++|.+.-+
T Consensus        83 ~v~~~~~~~~~~~g~iD~lvnnAG~  107 (272)
T 2nwq_A           83 AMSAAVDNLPEEFATLRGLINNAGL  107 (272)
T ss_dssp             HHHHHHHTCCGGGSSCCEEEECCCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCCC
Confidence            211       112468999887654

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=82.41  E-value=0.97  Score=36.87  Aligned_cols=91  Identities=18%  Similarity=0.285  Sum_probs=53.2

Q ss_pred             CC--CcEEEeCCC--cChHHHHHHh-hCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           42 KG--KRVIELGAG--CGVAGFGMAL-LGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        42 ~~--~~VLdlGcG--~G~~sl~la~-~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      +|  ++||=.|++  .|...+.+++ .|+ +|+++|.++ -++.+++.   .+.             .   ..+|..+.+
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~-------------~---~~~d~~~~~  218 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGF-------------D---AAINYKKDN  218 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCC-------------S---EEEETTTSC
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCC-------------c---eEEecCchH
Confidence            57  899999983  3665555554 588 899999743 44444321   121             1   113333221


Q ss_pred             cc----cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          115 HI----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       115 ~~----~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      ..    ....+.+|+++-+-.       ...+....+.++++|.+++.
T Consensus       219 ~~~~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          219 VAEQLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILC  259 (357)
T ss_dssp             HHHHHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEE
Confidence            10    011236899886532       25677788889999987654

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=82.30  E-value=2.1  Score=33.10  Aligned_cols=79  Identities=13%  Similarity=0.218  Sum_probs=47.9

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hH-HHHHHHHHHHh-hhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EV-LPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~-l~~a~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      +++++||=.|++.|+   ++..++..|++|+++|.+ +. ++.+...+... +             ..+.+..+|+.+.+
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~   68 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG-------------VKVLYDGADLSKGE   68 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT-------------SCEEEECCCTTSHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccC-------------CcEEEEECCCCCHH
Confidence            457889988886653   445555679999999873 33 44444433322 2             24667777876553


Q ss_pred             ccc-------ccCCCccEEEEeccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ...       ..-++.|++|.+.-+
T Consensus        69 ~v~~~~~~~~~~~g~iD~lv~~Ag~   93 (260)
T 1x1t_A           69 AVRGLVDNAVRQMGRIDILVNNAGI   93 (260)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCC
Confidence            221       011479999887554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.79
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.79
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.76
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.73
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.73
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.73
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.71
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.71
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.68
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.68
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.67
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.66
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.66
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.66
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.64
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.62
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.62
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.62
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.61
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.6
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.6
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.6
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.6
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.59
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.59
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.58
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.58
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.58
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.57
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.56
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.55
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.55
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.54
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.54
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.53
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.53
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.52
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.51
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.5
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.5
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.49
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.48
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.47
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.47
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.46
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.44
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.42
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.42
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.4
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.4
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.4
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.39
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.38
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.37
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.37
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.35
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.34
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.32
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.29
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.27
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.26
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.18
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.16
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.15
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.12
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.06
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.05
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.03
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.94
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.92
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.87
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.82
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.79
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.73
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.69
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.59
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.57
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.49
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.48
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.48
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.46
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.37
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.36
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.34
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.26
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.24
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.24
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.19
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.18
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.14
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.07
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.05
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.03
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.01
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.94
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.83
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.7
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.59
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.56
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.28
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.76
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.67
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.65
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.58
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.36
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.19
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.14
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.1
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.08
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.0
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.98
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.98
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.87
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.78
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.78
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.69
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.4
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.4
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	95.32
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	95.24
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.23
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.22
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.2
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.19
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	95.1
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.99
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	94.87
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.81
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.79
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.5
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.36
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.32
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	94.3
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.26
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.23
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.07
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.07
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.04
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.97
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.94
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.93
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	93.81
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.75
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.74
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.72
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	93.54
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.53
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.34
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.94
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	92.78
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	92.76
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	92.67
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.52
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.48
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	92.35
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.31
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	92.13
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	92.05
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	91.73
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	91.67
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.46
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	91.3
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	91.22
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	91.19
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	90.78
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	90.7
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.61
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	90.55
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	90.53
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	90.48
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	90.33
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	90.04
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.87
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	89.78
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.7
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.41
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	89.4
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	89.11
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	89.01
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.9
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	87.63
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.34
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	87.25
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	87.03
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	86.69
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	86.3
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.28
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	85.89
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	83.59
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	83.45
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	83.13
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	81.25
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	81.22
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	80.96
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	80.85
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	80.63
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	80.54
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	80.05

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.79  E-value=8.5e-19  Score=137.08  Aligned_cols=106  Identities=12%  Similarity=0.119  Sum_probs=92.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      +|.+|||||||+|.++..+++.+++|+++|+++ +++.|++++..++            .+++.+.+.|..+   .+..+
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~------------~~~~~~~~~d~~~---~~~~~   80 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKG------------VENVRFQQGTAES---LPFPD   80 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHT------------CCSEEEEECBTTB---CCSCT
T ss_pred             CCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhcccc------------ccccccccccccc---ccccc
Confidence            578999999999999999999999999999965 9999999988776            3478888887753   33456


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ++||+|++..++++..++..+++.+.++|+|||.++++....
T Consensus        81 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~  122 (234)
T d1xxla_          81 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  122 (234)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             cccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence            899999999999999999999999999999999999987654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.79  E-value=1e-18  Score=135.74  Aligned_cols=106  Identities=14%  Similarity=0.106  Sum_probs=92.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||||||+|..+..+++.|++|+++|+++ +++.|++++...+            ..++++.+.|+.+.   +...
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~------------~~~i~~~~~d~~~l---~~~~   79 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG------------HQQVEYVQGDAEQM---PFTD   79 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT------------CCSEEEEECCC-CC---CSCT
T ss_pred             CcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccc------------cccccccccccccc---cccc
Confidence            468999999999999999999999999999955 9999999988776            45789999888654   3346


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ++||+|++..+++|..++..+++.+.++|+|||.+++.+...
T Consensus        80 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          80 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             cccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            799999999999999999999999999999999999887654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.76  E-value=6.2e-18  Score=128.89  Aligned_cols=147  Identities=18%  Similarity=0.181  Sum_probs=111.9

Q ss_pred             CcccCCCCCCceEEEeecCcceeeccccccc---c-------CccCCCCCCCCcEEEeCCCcChHHHHHHhhCCeEEEee
Q 029065            2 EADRLNSPSTSVINLEVLGHQLQFSQEKNCR---K-------GRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTD   71 (199)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D   71 (199)
                      ++.|......+.+...+.|..+.+.+...+-   .       ..-.-...++++|||+|||+|.+++.++..+.+|+++|
T Consensus         2 ~~~p~~~~~~~~~~~~~~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD   81 (194)
T d1dusa_           2 SEKPTTKSDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMAD   81 (194)
T ss_dssp             CCCCCSCCCEEEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEE
T ss_pred             CCCCCCccceEEEEEEECCeeEEEEcCCCccCCCCcCHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceee
Confidence            4556677777778888888888876653320   0       00011234678999999999999999999999999999


Q ss_pred             chh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCCccEEEEeccccCCcC-hHHHHHHHHHhc
Q 029065           72 QIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-LEPLLQTIFALS  149 (199)
Q Consensus        72 ~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~~-~~~~l~~l~~~l  149 (199)
                      +++ +++.+++|+..++..          ..++++...|+...    ..++.||+|++++++++... ...+++.+.++|
T Consensus        82 ~s~~~i~~a~~n~~~~~l~----------~~~i~~~~~d~~~~----~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~L  147 (194)
T d1dusa_          82 INRRAIKLAKENIKLNNLD----------NYDIRVVHSDLYEN----VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELL  147 (194)
T ss_dssp             SCHHHHHHHHHHHHHTTCT----------TSCEEEEECSTTTT----CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHE
T ss_pred             eccccchhHHHHHHHhCCc----------cceEEEEEcchhhh----hccCCceEEEEcccEEecchhhhhHHHHHHHhc
Confidence            955 999999999988642          33578888776532    23578999999999877554 578999999999


Q ss_pred             CCCcEEEEEEEec
Q 029065          150 GPKTTILLGYEIR  162 (199)
Q Consensus       150 ~~~g~i~i~~~~~  162 (199)
                      +|||.+++.....
T Consensus       148 kpgG~l~i~~~~~  160 (194)
T d1dusa_         148 KDNGEIWVVIQTK  160 (194)
T ss_dssp             EEEEEEEEEEEST
T ss_pred             CcCcEEEEEEeCc
Confidence            9999998876654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.73  E-value=1.4e-17  Score=133.62  Aligned_cols=111  Identities=12%  Similarity=0.057  Sum_probs=94.7

Q ss_pred             CCCCCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           38 PSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ....++.+|||||||+|..+..+++. |++|+++|+++ +++.|+++....++           ..++++...|+.+.  
T Consensus        63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl-----------~~~v~~~~~d~~~l--  129 (282)
T d2o57a1          63 GVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----------ADNITVKYGSFLEI--  129 (282)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----------TTTEEEEECCTTSC--
T ss_pred             cCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccc-----------cccccccccccccc--
Confidence            34457889999999999999999875 88999999955 99999998887764           45789999887644  


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                       +...++||+|++..+++|..++..+++.+.++|+|||.+++.....
T Consensus       130 -~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~  175 (282)
T d2o57a1         130 -PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  175 (282)
T ss_dssp             -SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             -cccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence             3446789999999999999999999999999999999999987653

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.1e-17  Score=131.62  Aligned_cols=107  Identities=16%  Similarity=0.100  Sum_probs=92.7

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ..+|++|||||||+|..+..+++. |++|+|+|+++ +++.|++++...++           .+++++...|+.+.    
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl-----------~~~v~~~~~d~~~~----   95 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----------SERVHFIHNDAAGY----   95 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCCTTC----
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhc-----------cccchhhhhHHhhc----
Confidence            345899999999999999988865 78999999955 99999999888864           45789999888653    


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..+++||+|++..++++..++..+++.+.++|+|||.+++..+.
T Consensus        96 ~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_          96 VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence            23578999999999999999999999999999999999998764

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=1.2e-17  Score=128.65  Aligned_cols=104  Identities=18%  Similarity=0.267  Sum_probs=86.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||||||+|..+..+++.|.+|+|+|+++ +++.|++++...+.             .+.....|..+   ++..+
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~-------------~~~~~~~d~~~---l~~~~  100 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES-------------NVEFIVGDARK---LSFED  100 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEECCTTS---CCSCT
T ss_pred             CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccc-------------ccccccccccc---ccccC
Confidence            567999999999999999999999999999955 99999988766542             45666655543   33446


Q ss_pred             CCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +.||+|++..++.+.+  ++..+++.+.++|+|||.++|....
T Consensus       101 ~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         101 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            7899999999998854  7888999999999999999888764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=2e-17  Score=131.17  Aligned_cols=121  Identities=21%  Similarity=0.224  Sum_probs=92.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+|++|||+|||+|.+++.+++.|++|+++|+++ +++.|++|+..|+.             ..++...|+..    ...
T Consensus       119 ~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~-------------~~~~~~~d~~~----~~~  181 (254)
T d2nxca1         119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGV-------------RPRFLEGSLEA----ALP  181 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTC-------------CCEEEESCHHH----HGG
T ss_pred             CccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCC-------------ceeEEeccccc----ccc
Confidence            4689999999999999999999999999999955 99999999999874             34566655532    123


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  183 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~  183 (199)
                      .++||+|+++-.   ...+..++..+.++|+|||.++++......  ...+.+.+. .+|.+...
T Consensus       182 ~~~fD~V~ani~---~~~l~~l~~~~~~~LkpGG~lilSgil~~~--~~~v~~~~~~~Gf~~~~~  241 (254)
T d2nxca1         182 FGPFDLLVANLY---AELHAALAPRYREALVPGGRALLTGILKDR--APLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             GCCEEEEEEECC---HHHHHHHHHHHHHHEEEEEEEEEEEEEGGG--HHHHHHHHHHTTCEEEEE
T ss_pred             ccccchhhhccc---cccHHHHHHHHHHhcCCCcEEEEEecchhh--HHHHHHHHHHCCCEEEEE
Confidence            578999999732   345678899999999999999998765433  234444543 47877543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.71  E-value=4.6e-17  Score=124.11  Aligned_cols=105  Identities=20%  Similarity=0.253  Sum_probs=87.5

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +++.+|||||||+|..++.+++.|.+|+++|+++ +++.+++++...+            .+++.+...|+....    .
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~------------~~~~~~~~~d~~~~~----~   92 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEG------------LDNLQTDLVDLNTLT----F   92 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------------CTTEEEEECCTTTCC----C
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhcc------------ccchhhhheeccccc----c
Confidence            4556999999999999999999999999999965 9999999887765            346787777765332    2


Q ss_pred             CCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +++||+|++..++++.  .....+++.+.++|+|+|.+++....
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          93 DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            5789999999999884  45778999999999999998887644

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=6.7e-17  Score=126.80  Aligned_cols=103  Identities=18%  Similarity=0.244  Sum_probs=84.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++++|||||||+|..++.+++.|++|+|+|+++ |++.|++++..++.             ++++.+.|+.+..    ..
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~-------------~i~~~~~d~~~l~----~~  103 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-------------KIEFLQGDVLEIA----FK  103 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEESCGGGCC----CC
T ss_pred             CCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc-------------cchheehhhhhcc----cc
Confidence            457899999999999999999999999999965 99999999877642             5788888875442    24


Q ss_pred             CCccEEEEe-ccccCC--cChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGT-DVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~-~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +.||+|++. .++++.  .+...+++.+.++|+|||.+++..+.
T Consensus       104 ~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence            589999986 455553  46778999999999999999886653

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=4.7e-17  Score=126.88  Aligned_cols=101  Identities=17%  Similarity=0.183  Sum_probs=81.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      ..+.+|||+|||+|..+..++..|++|+|+|+++ +++.|+++...                  .....+..   .++..
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~------------------~~~~~~~~---~l~~~   99 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK------------------NVVEAKAE---DLPFP   99 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS------------------CEEECCTT---SCCSC
T ss_pred             CCCCEEEEECCCCchhcccccccceEEEEeeccccccccccccccc------------------cccccccc---ccccc
Confidence            3578999999999999999999999999999965 99998875211                  12334433   33444


Q ss_pred             CCCccEEEEe-ccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGT-DVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~-~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ++.||+|++. .+++|..++..+++.+.++|+|||.++++.+..
T Consensus       100 ~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         100 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             TTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             cccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence            6899999985 678888999999999999999999999988753

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.67  E-value=1.1e-16  Score=124.26  Aligned_cols=102  Identities=14%  Similarity=0.117  Sum_probs=85.4

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +++++|||||||+|..+..++..|.+|+++|+++ +++.|+++..                .++.+...++.+..    .
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~----------------~~~~~~~~~~~~~~----~   78 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK----------------DGITYIHSRFEDAQ----L   78 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC----------------SCEEEEESCGGGCC----C
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc----------------cccccccccccccc----c
Confidence            4678999999999999999999999999999955 9998876531                25677776664332    2


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHH-HhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIF-ALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~-~~l~~~g~i~i~~~~~  162 (199)
                      ++.||+|++.+++.|..++..++..+. ++|+|||.+++..+..
T Consensus        79 ~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~  122 (225)
T d2p7ia1          79 PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA  122 (225)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence            578999999999999999999999997 7899999999998753

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.66  E-value=5.8e-17  Score=122.10  Aligned_cols=146  Identities=15%  Similarity=-0.010  Sum_probs=97.3

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..+|.+|||+|||+|..++.+|+.|.+|+|+|+++ +++.|++.+...........-.......+.+...|+....  ..
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~   95 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT--AR   95 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST--HH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc--cc
Confidence            44789999999999999999999999999999965 9999988874432110000000000123455555554332  12


Q ss_pred             cCCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEecChh--------H-HHHHHHHHHhCCeEEEecCCC
Q 029065          119 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRSTS--------V-HEQMLQMWKSNFNVKLVPKAK  187 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~~~~~--------~-~~~~~~~~~~~~~v~~~~~~~  187 (199)
                      ....||+|++..++++..  ....+++.+.++|+|||.+++........        . .+.+.+.+..+|+++.+....
T Consensus        96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~~~~~i~~~~~~~  175 (201)
T d1pjza_          96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQD  175 (201)
T ss_dssp             HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEEEEEEEESS
T ss_pred             cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhCCCcEEEEEEEec
Confidence            245899999998888754  57889999999999999988776543221        1 223333345677776665443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.66  E-value=9.1e-17  Score=126.16  Aligned_cols=104  Identities=13%  Similarity=0.083  Sum_probs=84.2

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..++++|||||||+|..+..+++.|.+|+|+|.++ |++.|++++..++.             ++++.+.|+.+..    
T Consensus        35 ~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~-------------~v~~~~~d~~~~~----   97 (246)
T d1y8ca_          35 NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-------------KPRLACQDISNLN----   97 (246)
T ss_dssp             TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-------------CCEEECCCGGGCC----
T ss_pred             CCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc-------------cceeeccchhhhc----
Confidence            35578999999999999999999999999999965 99999998876643             5788888876442    


Q ss_pred             cCCCccEEEEe-ccccC---CcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          119 VAPPFDYIIGT-DVVYA---EHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       119 ~~~~fD~Ii~~-~~~~~---~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ..++||+|++. .++++   ..+...+++.+.++|+|||.+++...
T Consensus        98 ~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~  143 (246)
T d1y8ca_          98 INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN  143 (246)
T ss_dssp             CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence            24689999975 45544   34677899999999999999887543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.5e-16  Score=120.51  Aligned_cols=131  Identities=14%  Similarity=0.026  Sum_probs=98.6

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ...+.+|||||||+|..+..++.. +.+|+++|+++ +++.|++++...+.            .++++.+.|+.+.   .
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~------------~~~~f~~~d~~~~---~  122 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------------RVRNYFCCGLQDF---T  122 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG------------GEEEEEECCGGGC---C
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc------------ccccccccccccc---c
Confidence            345679999999999999887654 55799999955 99999998876652            3678888777543   2


Q ss_pred             ccCCCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEecChh------------HHHHHHHHHH-hCCeEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRSTS------------VHEQMLQMWK-SNFNVKL  182 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~~~~~------------~~~~~~~~~~-~~~~v~~  182 (199)
                      ...+.||+|++..++++..+  ...+++.+.++|+|+|.+++........            ..+.+.+.+. .||++..
T Consensus       123 ~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~  202 (222)
T d2ex4a1         123 PEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA  202 (222)
T ss_dssp             CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred             cccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence            34679999999999998654  4689999999999999999987643321            1345555554 4898755


Q ss_pred             ecC
Q 029065          183 VPK  185 (199)
Q Consensus       183 ~~~  185 (199)
                      ...
T Consensus       203 ~~~  205 (222)
T d2ex4a1         203 EER  205 (222)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.64  E-value=8.7e-16  Score=116.08  Aligned_cols=104  Identities=17%  Similarity=0.145  Sum_probs=85.8

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+|.+|||+|||+|..++.+|+.+++|+++|++ ++++.|++|+..+++           ..++++.+.|..+.   ...
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl-----------~~~v~~~~gda~~~---~~~   97 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGL-----------GDNVTLMEGDAPEA---LCK   97 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-----------CTTEEEEESCHHHH---HTT
T ss_pred             CCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCC-----------CcceEEEECchhhc---ccc
Confidence            368899999999999999999998899999995 599999999999874           35888888776322   233


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .+.||+|+++...   .....+++.+.++|+|+|.+++....
T Consensus        98 ~~~~D~v~~~~~~---~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          98 IPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             SCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             cCCcCEEEEeCcc---ccchHHHHHHHHHhCcCCEEEEEeec
Confidence            5689999998654   45678999999999999998876643

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.62  E-value=7.6e-16  Score=123.57  Aligned_cols=104  Identities=17%  Similarity=0.159  Sum_probs=87.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++.+|||+|||+|..+..++..   +++|+++|+++ +++.|++++...+.             ++++...|+.+..  
T Consensus        26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-------------~~~f~~~d~~~~~--   90 (281)
T d2gh1a1          26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-------------DSEFLEGDATEIE--   90 (281)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-------------EEEEEESCTTTCC--
T ss_pred             CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-------------ccccccccccccc--
Confidence            35689999999999999999974   57899999955 99999998876642             5677777765432  


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                        ..++||+|+++.++++..++..+++.+.+.|+|||.+++..+.
T Consensus        91 --~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          91 --LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             --CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             --ccCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence              2457999999999999999999999999999999999888754

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.62  E-value=1.2e-15  Score=118.15  Aligned_cols=106  Identities=15%  Similarity=0.133  Sum_probs=83.9

Q ss_pred             CCCCcEEEeCCCcChHHHHHHh----hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGVAGFGMAL----LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~----~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++.+|||||||+|..+..+++    .+++|+|+|+++ |++.|++++...+.           ...+.+...|..+   
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~-----------~~~~~~~~~d~~~---  103 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRH---  103 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC-----------SSCEEEECSCTTT---
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc-----------cchhhhccchhhc---
Confidence            3578999999999999999986    377899999955 99999998876532           2345555544432   


Q ss_pred             ccccCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          116 IKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                        .....+|+|+++.++++.  .++..+++.+.+.|+|||.+++.+...
T Consensus       104 --~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~  150 (225)
T d1im8a_         104 --VEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  150 (225)
T ss_dssp             --CCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             --cccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence              234679999999888774  578899999999999999999987654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=1.7e-15  Score=121.60  Aligned_cols=106  Identities=14%  Similarity=0.174  Sum_probs=85.8

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ..-+|.+|||||||+|.++..+++. |++|+++|+++ .++.|++.+...++           ...+.+...|+..    
T Consensus        49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l-----------~~~~~~~~~d~~~----  113 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----------NRSRQVLLQGWED----  113 (280)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----------SSCEEEEESCGGG----
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhcc-----------ccchhhhhhhhhh----
Confidence            3446889999999999999998865 89999999955 99999998877754           3356666555432    


Q ss_pred             cccCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                        ..++||.|++.+++.|.  .+++.+++.+.++|+|||.+++....
T Consensus       114 --~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         114 --FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             --CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             --hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence              25789999999999886  46689999999999999999886543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.61  E-value=5.3e-16  Score=113.77  Aligned_cols=108  Identities=15%  Similarity=0.265  Sum_probs=86.2

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .++|++|||+|||+|.+|+.++.+|++ |+++|. +++++.+++|++.++.           ..++++.+.|+...  ..
T Consensus        12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~-----------~~~~~ii~~D~~~~--l~   78 (152)
T d2esra1          12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----------ENRFTLLKMEAERA--ID   78 (152)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----------GGGEEEECSCHHHH--HH
T ss_pred             hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhccc-----------ccchhhhccccccc--cc
Confidence            478999999999999999999999985 999999 5599999999998864           34688888777532  22


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHH--hcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~--~l~~~g~i~i~~~~  161 (199)
                      ...++||+|++.+| |........+..+..  +|+|+|.+++....
T Consensus        79 ~~~~~fDiIf~DPP-y~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          79 CLTGRFDLVFLDPP-YAKETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             HBCSCEEEEEECCS-SHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             ccccccceeEechh-hccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            34678999999755 666677777887764  58999998886543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=2.7e-15  Score=119.84  Aligned_cols=114  Identities=18%  Similarity=0.314  Sum_probs=88.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|.+++.++..  .++|+++|+++ +++.|++|+..++.            +++++.+.||...    .
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~------------~~v~~~~~d~~~~----~  171 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------------KNIHILQSDWFSA----L  171 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------------CSEEEECCSTTGG----G
T ss_pred             cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc------------ccceeeecccccc----c
Confidence            4568999999999999999976  45799999955 99999999998873            4789999888633    2


Q ss_pred             cCCCccEEEEeccccCCc-------------------------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHH
Q 029065          119 VAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQML  171 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~-------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~  171 (199)
                      ...+||+|++|+|+....                         .+..++....++|+|+|.+++............++
T Consensus       172 ~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l  249 (274)
T d2b3ta1         172 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAF  249 (274)
T ss_dssp             TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHH
T ss_pred             CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHH
Confidence            246899999999986432                         25568888889999999999976655444333333

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.7e-15  Score=116.69  Aligned_cols=143  Identities=19%  Similarity=0.102  Sum_probs=99.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccC-CC----CCCCCCcEEEEEeeeCCCc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQM-NP----GSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~-~~----~~~~~~~i~~~~~d~~~~~  114 (199)
                      .++.+|||+|||+|..++.+|..|.+|+|+|+++ +++.|++............ .+    ......++++.+.|+....
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~  123 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP  123 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc
Confidence            3678999999999999999999999999999965 9998887654322100000 00    0011346777777765332


Q ss_pred             cccccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEecChh---------HHHHHHHHHHhCCeEEEe
Q 029065          115 HIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIRSTS---------VHEQMLQMWKSNFNVKLV  183 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~---------~~~~~~~~~~~~~~v~~~  183 (199)
                        ....+.||+|+...++++  .+....+++.+.++|+|||.+++........         ....+.+.+...|+++.+
T Consensus       124 --~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el~~lf~~~~~i~~l  201 (229)
T d2bzga1         124 --RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEIERLFGKICNIRCL  201 (229)
T ss_dssp             --GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHHHHHHTTTEEEEEE
T ss_pred             --ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHHHHHhcCCCEEEEE
Confidence              233578999999998877  4678899999999999999987776553211         123344455667887665


Q ss_pred             cC
Q 029065          184 PK  185 (199)
Q Consensus       184 ~~  185 (199)
                      ..
T Consensus       202 e~  203 (229)
T d2bzga1         202 EK  203 (229)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=1.3e-15  Score=124.11  Aligned_cols=106  Identities=20%  Similarity=0.196  Sum_probs=85.6

Q ss_pred             CCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           37 CPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +...++|++|||||||+|.+++.+|+.|++ |+++|.+++...+++++..|+.           ..++.+.+.+..+.. 
T Consensus        28 ~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~-----------~~~v~~~~~~~~~~~-   95 (316)
T d1oria_          28 NRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL-----------DHVVTIIKGKVEEVE-   95 (316)
T ss_dssp             CHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC-
T ss_pred             ccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCC-----------ccccceEeccHHHcc-
Confidence            445678999999999999999999999975 9999997766778888877754           457898887765443 


Q ss_pred             ccccCCCccEEEEecccc---CCcChHHHHHHHHHhcCCCcEEE
Q 029065          116 IKAVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTIL  156 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~---~~~~~~~~l~~l~~~l~~~g~i~  156 (199)
                        ...++||+|++..+.+   +...++.++..+.++|+|||.++
T Consensus        96 --~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          96 --LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             --CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             --cccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence              3357899999865543   45678999999999999999765

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.60  E-value=1.4e-15  Score=119.91  Aligned_cols=108  Identities=15%  Similarity=0.063  Sum_probs=85.0

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .++++|||||||+|..+..+++.|. +|+|+|+++ +++.|++.....+.           ..++.+.+.|.....  ..
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~-----------~~~v~f~~~D~~~~~--~~   89 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----------RFKVFFRAQDSYGRH--MD   89 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----------SSEEEEEESCTTTSC--CC
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC-----------CcceEEEEcchhhhc--cc
Confidence            3678999999999988888888876 699999965 99999988765532           346788887764332  12


Q ss_pred             cCCCccEEEEeccccCC----cChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          119 VAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..+.||+|++...+++.    .....+++.+.++|+|||.+++..+.
T Consensus        90 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_          90 LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             ccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            35689999999888763    35678999999999999999988764

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=2.9e-15  Score=122.65  Aligned_cols=106  Identities=23%  Similarity=0.240  Sum_probs=86.4

Q ss_pred             CCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           37 CPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +...++|++|||||||+|.+++.+|+.|++ |+++|.++++..|++++..++.           ..++.+...+..+.  
T Consensus        33 ~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~-----------~~~i~~i~~~~~~l--   99 (328)
T d1g6q1_          33 NKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGF-----------SDKITLLRGKLEDV--   99 (328)
T ss_dssp             HHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTS--
T ss_pred             ccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCc-----------cccceEEEeehhhc--
Confidence            344568999999999999999999999985 9999998888889988888764           56788888776543  


Q ss_pred             ccccCCCccEEEEecccc---CCcChHHHHHHHHHhcCCCcEEE
Q 029065          116 IKAVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTIL  156 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~---~~~~~~~~l~~l~~~l~~~g~i~  156 (199)
                       ..+.++||+|++..+.+   +......++..+.++|+|||.++
T Consensus       100 -~~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         100 -HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             -CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             -cCcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence             33467899999975554   46778999999999999999763

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=3.3e-15  Score=120.43  Aligned_cols=106  Identities=16%  Similarity=0.155  Sum_probs=85.8

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHH-hhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la-~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ..-+|.+|||||||.|.+++.+| +.|++|+++++++ .++.+++.+...++           ...+.+...|+.     
T Consensus        58 ~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l-----------~~~v~~~~~d~~-----  121 (291)
T d1kpia_          58 NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----------PRRKEVRIQGWE-----  121 (291)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCC-----------SSCEEEEECCGG-----
T ss_pred             CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhcc-----------chhhhhhhhccc-----
Confidence            34468999999999999999887 5699999999965 88889888877654           346676665542     


Q ss_pred             cccCCCccEEEEeccccCCc---------ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~---------~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                       ..+++||.|++.+++.|..         +++.+++.+.++|+|||.+++..-.
T Consensus       122 -~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         122 -EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             -GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             -ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence             2357899999999998854         4789999999999999999886643

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=1.8e-15  Score=121.74  Aligned_cols=112  Identities=16%  Similarity=0.180  Sum_probs=81.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .+++|||||||+|..++.+++.|.+|+|+|+++ |++.|+++....+....        .....+...+|...+......
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  127 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPA--------FDKWVIEEANWLTLDKDVPAG  127 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHH--------HHTCEEEECCGGGHHHHSCCT
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccc--------cceeeeeeccccccccccCCC
Confidence            357999999999999999999999999999965 99999998876542110        113345555654332222235


Q ss_pred             CCccEEEEe-ccccCC-------cChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGT-DVVYAE-------HLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~-~~~~~~-------~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +.||+|++. .++.+.       .+...+++.+.++|+|||.++|....
T Consensus       128 ~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         128 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             TCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence            689999875 455543       24677999999999999999887653

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=4.6e-15  Score=119.26  Aligned_cols=105  Identities=15%  Similarity=0.183  Sum_probs=87.1

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ..-+|.+|||||||.|.+++.+|+ .|++|++++++. .++.|++.+...+.           ..++++...|+...   
T Consensus        59 ~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~---  124 (285)
T d1kpga_          59 GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----------LRSKRVLLAGWEQF---  124 (285)
T ss_dssp             TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----------CSCEEEEESCGGGC---
T ss_pred             CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhh-----------hhhhHHHHhhhhcc---
Confidence            345789999999999999998774 599999999955 88899888877653           56888888777432   


Q ss_pred             cccCCCccEEEEeccccCC--cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          117 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                         +++||.|++..++.|.  .....+++.+.++|+|||.+++.+-
T Consensus       125 ---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         125 ---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             ---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence               4689999999999886  5678999999999999999887654

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.58  E-value=2.2e-15  Score=122.99  Aligned_cols=140  Identities=13%  Similarity=0.112  Sum_probs=99.6

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~  118 (199)
                      .+|++|||+|||+|..++.+|..+++|+++|.++ +++.|++|+..|++            +++++...|..+.. ....
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl------------~~~~~i~~d~~~~~~~~~~  211 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL------------GNVRVLEANAFDLLRRLEK  211 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC------------TTEEEEESCHHHHHHHHHH
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCC------------CCcceeeccHHHHhhhhHh
Confidence            4789999999999999999998777899999965 99999999999984            46788887764321 1223


Q ss_pred             cCCCccEEEEeccccCCc---------ChHHHHHHHHHhcCCCcEEEEEEEecCh--hHHHH-HHHHH-HhCCeEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRST--SVHEQ-MLQMW-KSNFNVKLVPK  185 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~---------~~~~~l~~l~~~l~~~g~i~i~~~~~~~--~~~~~-~~~~~-~~~~~v~~~~~  185 (199)
                      ..++||+|++++|.+...         .+..++....++|+|||.++++.....-  ..+.. ..+.. ..+-+++.+..
T Consensus       212 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a~~~~~~~~~  291 (318)
T d1wxxa2         212 EGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEK  291 (318)
T ss_dssp             TTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             hhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence            356899999998876532         2456788888999999998887765332  21222 22222 23556666665


Q ss_pred             CCcCccc
Q 029065          186 AKESTMW  192 (199)
Q Consensus       186 ~~~~~~~  192 (199)
                      ...+.++
T Consensus       292 ~~~~~Dh  298 (318)
T d1wxxa2         292 RGQPFDH  298 (318)
T ss_dssp             ECCCTTS
T ss_pred             cCCCCCC
Confidence            5555554

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.8e-15  Score=119.88  Aligned_cols=106  Identities=22%  Similarity=0.251  Sum_probs=82.6

Q ss_pred             CCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           37 CPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +...++|++|||||||+|.+++.+|+.|++ |+++|.++....+++++..++.           ..++.+.+.+..+.  
T Consensus        30 ~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~-----------~~~i~~~~~~~~~l--   96 (311)
T d2fyta1          30 NPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKL-----------EDTITLIKGKIEEV--   96 (311)
T ss_dssp             CGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTS--
T ss_pred             ccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCC-----------CccceEEEeeHHHh--
Confidence            456678999999999999999999999984 9999997744556666666643           56788888776543  


Q ss_pred             ccccCCCccEEEEeccccC---CcChHHHHHHHHHhcCCCcEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTIL  156 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~---~~~~~~~l~~l~~~l~~~g~i~  156 (199)
                       .....+||+|++..+.+.   ...+..++....++|+|||.++
T Consensus        97 -~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          97 -HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             -CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             -cCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence             334578999998655443   4567888999999999999765

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.56  E-value=3e-15  Score=118.44  Aligned_cols=103  Identities=12%  Similarity=0.042  Sum_probs=81.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+.+|||+|||+|..+..++.. +.+|+++|+++ +++.|+++....              ..+++.+.+..+.   ...
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~--------------~~~~~~~~d~~~~---~~~  155 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--------------PVGKFILASMETA---TLP  155 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--------------SEEEEEESCGGGC---CCC
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc--------------ccceeEEcccccc---ccC
Confidence            4579999999999999887754 56799999955 999998775322              3567777666433   334


Q ss_pred             CCCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .+.||+|++..+++|..+  ...+++.+.++|+|||.++|....
T Consensus       156 ~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~  199 (254)
T d1xtpa_         156 PNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC  199 (254)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             CCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecC
Confidence            678999999999999755  468899999999999999998764

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=7.9e-15  Score=119.94  Aligned_cols=146  Identities=14%  Similarity=0.103  Sum_probs=101.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~  118 (199)
                      +|++|||+|||+|..++.+++.|+ +|+++|+++ +++.+++|+..|++           ..++++.+.|..+.. ....
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl-----------~~~~~~~~~d~~~~~~~~~~  213 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----------EDRMKFIVGSAFEEMEKLQK  213 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHHHH
T ss_pred             CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCC-----------CccceeeechhhhhhHHHHh
Confidence            489999999999999999999987 599999955 99999999999985           246777776654221 1122


Q ss_pred             cCCCccEEEEeccccCCc---------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH----H-hCCeEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW----K-SNFNVKLVP  184 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~---------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~----~-~~~~v~~~~  184 (199)
                      ...+||+|++++|.+...         .+.+++....++|+|||.++++.....-. .+.|.+..    . .+-.+..+.
T Consensus       214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~-~~~f~~~v~~a~~~~gr~~~~~~  292 (324)
T d2as0a2         214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD-LQMFKDMIIAAGAKAGKFLKMLE  292 (324)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC-HHHHHHHHHHHHHHTTEEEEESS
T ss_pred             ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCC-HHHHHHHHHHHHHHcCCeEEEee
Confidence            356899999988866532         35667888888999999988887654332 23443332    2 344555554


Q ss_pred             CC-CcCccc----CCCCCCC
Q 029065          185 KA-KESTMW----GNPLGLY  199 (199)
Q Consensus       185 ~~-~~~~~~----~~~~~~~  199 (199)
                      +. ..+.+|    .-++|.|
T Consensus       293 ~~~~~~~DhP~~~~~pe~~Y  312 (324)
T d2as0a2         293 PYRTQAPDHPILMASKDTEY  312 (324)
T ss_dssp             CBBCSCTTSCCBTTCGGGCC
T ss_pred             ecCCCCCCCCCCCCCCCCCC
Confidence            42 334343    3445555

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.55  E-value=8.8e-15  Score=119.25  Aligned_cols=113  Identities=17%  Similarity=0.105  Sum_probs=88.0

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-ccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~  117 (199)
                      .+|++|||++||+|..|+.++..|+. |+++|.+. +++.+++|++.|++.          ..++++...|..... ...
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~----------~~~~~~i~~d~~~~l~~~~  212 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD----------MANHQLVVMDVFDYFKYAR  212 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----------CTTEEEEESCHHHHHHHHH
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc----------CcceEEEEccHHHHHHHHH
Confidence            36899999999999999999998885 99999965 999999999999853          346788887764221 111


Q ss_pred             ccCCCccEEEEeccccCCc---------ChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          118 AVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~---------~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      ....+||+|++.+|-+...         ++.+++....++|+|||.++++.....
T Consensus       213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~  267 (317)
T d2b78a2         213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN  267 (317)
T ss_dssp             HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence            2246899999998866422         467789999999999999999887543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=1.7e-14  Score=110.09  Aligned_cols=95  Identities=15%  Similarity=0.201  Sum_probs=76.8

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           43 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      +.+|||||||+|..+..+    ++++++|+++ +++.++++                   .+.+.+.|..+   .+..++
T Consensus        37 ~~~vLDiGcG~G~~~~~~----~~~~giD~s~~~~~~a~~~-------------------~~~~~~~d~~~---l~~~~~   90 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIARKR-------------------GVFVLKGTAEN---LPLKDE   90 (208)
T ss_dssp             SSCEEEETCTTSTTHHHH----TCCEEEESCHHHHHHHHHT-------------------TCEEEECBTTB---CCSCTT
T ss_pred             CCeEEEECCCCccccccc----ceEEEEeCChhhccccccc-------------------ccccccccccc---cccccc
Confidence            458999999999877666    3579999955 88887653                   34666666543   334467


Q ss_pred             CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      .||+|++..++++.+++..+++.+.++|+|||.+++..+...
T Consensus        91 ~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~  132 (208)
T d1vlma_          91 SFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE  132 (208)
T ss_dssp             CEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             cccccccccccccccccccchhhhhhcCCCCceEEEEecCCc
Confidence            899999999999999999999999999999999999987543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.54  E-value=1.8e-14  Score=109.74  Aligned_cols=98  Identities=19%  Similarity=0.211  Sum_probs=68.0

Q ss_pred             CCCCCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           37 CPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ....++|++|||+|||+|.+++.++..|+. |+++|++ .+++.|++|+.                 ++++...|+.+  
T Consensus        43 ~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~-----------------~~~~~~~D~~~--  103 (197)
T d1ne2a_          43 NDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------------GVNFMVADVSE--  103 (197)
T ss_dssp             HHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCGGG--
T ss_pred             HcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc-----------------cccEEEEehhh--
Confidence            446788999999999999999999999875 9999995 49899888742                 45677777642  


Q ss_pred             cccccCCCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          115 HIKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                          ..++||+|++|+|+-...  .-..+++..   +..+..+|....
T Consensus       104 ----l~~~fD~Vi~NPPfg~~~~~~D~~fl~~a---~~~~~~iy~ih~  144 (197)
T d1ne2a_         104 ----ISGKYDTWIMNPPFGSVVKHSDRAFIDKA---FETSMWIYSIGN  144 (197)
T ss_dssp             ----CCCCEEEEEECCCC-------CHHHHHHH---HHHEEEEEEEEE
T ss_pred             ----cCCcceEEEeCcccchhhhhchHHHHHHH---HhcCCeEEEehh
Confidence                257899999998863211  112344433   344455554433

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.4e-14  Score=115.64  Aligned_cols=106  Identities=18%  Similarity=0.265  Sum_probs=79.0

Q ss_pred             CcEEEeCCCcChHHHHHHhh------C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           44 KRVIELGAGCGVAGFGMALL------G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~------g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      .+|||||||+|..+..++..      +  ..++++|+++ +++.+++++....           ....+.   ++|...+
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~-----------~~~~~~---~~~~~~~  107 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKIS-----------NLENVK---FAWHKET  107 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCC-----------SCTTEE---EEEECSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcc-----------cccccc---ccchhhh
Confidence            37999999999988777643      2  3589999965 9999998875432           122333   3443222


Q ss_pred             c--------ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          115 H--------IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       115 ~--------~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      .        .....++||+|++..++++..++..+++.+.++|+|||.+++......
T Consensus       108 ~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~  164 (280)
T d1jqea_         108 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS  164 (280)
T ss_dssp             HHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             hhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence            1        123357899999999999999999999999999999999888876543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.53  E-value=1.8e-14  Score=116.52  Aligned_cols=111  Identities=18%  Similarity=0.121  Sum_probs=86.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-ccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~  119 (199)
                      ++++|||++||+|..++.++..|++|+++|.+. +++.|++|+..|+..          ..++++.+.|..... .....
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~----------~~~~~~i~~D~~~~l~~~~~~  201 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLE----------QAPIRWICEDAMKFIQREERR  201 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCT----------TSCEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhccc----------CCcEEEEeCCHHHhHHHHhhc
Confidence            578999999999999999999999999999965 999999999999753          236888887764331 11123


Q ss_pred             CCCccEEEEeccccCC----------cChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          120 APPFDYIIGTDVVYAE----------HLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~----------~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ..+||+||+.+|-|..          .++..++..+.++|+|+|.++++....
T Consensus       202 ~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s  254 (309)
T d2igta1         202 GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  254 (309)
T ss_dssp             TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             CCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence            5689999999887642          235677888899999999876666543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.52  E-value=4.2e-14  Score=111.50  Aligned_cols=103  Identities=16%  Similarity=0.078  Sum_probs=84.7

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .++|||||||+|..++.+++.  +.+++++|++++++.+++++...+.           ..++++...|+.+.     ..
T Consensus        81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~rv~~~~~D~~~~-----~~  144 (253)
T d1tw3a2          81 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL-----------SDRVDVVEGDFFEP-----LP  144 (253)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC-----CS
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhc-----------ccchhhccccchhh-----cc
Confidence            479999999999999999987  4568899998899999999887754           45789988886432     13


Q ss_pred             CCccEEEEeccccCCcC--hHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~--~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..||+|+++.++++.++  ...+++.+.+.|+|||.++|.+..
T Consensus       145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            57999999999987544  468899999999999999998753

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.51  E-value=1.1e-13  Score=106.26  Aligned_cols=127  Identities=17%  Similarity=0.148  Sum_probs=89.3

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-C-CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .-+|.+|||||||+|..+..++.. + .+|+++|++ .+++.+++++...+              ++.+...|.......
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~--------------ni~~i~~d~~~~~~~  119 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--------------NIIPLLFDASKPWKY  119 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--------------SEEEECSCTTCGGGT
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC--------------CceEEEeeccCcccc
Confidence            446889999999999999999975 2 469999995 49999988876543              677777666544332


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh-------hHHHHHHHHHHhCCeEEE
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWKSNFNVKL  182 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~-------~~~~~~~~~~~~~~~v~~  182 (199)
                      ......+|+|+.  .+.+......++..+.+.|+|||.++++...+..       ..+......+..+|++.+
T Consensus       120 ~~~~~~vd~v~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l~~gf~i~E  190 (209)
T d1nt2a_         120 SGIVEKVDLIYQ--DIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEMEGDFKIVK  190 (209)
T ss_dssp             TTTCCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred             ccccceEEEEEe--cccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            222234444443  3566778889999999999999999998764322       123333444556898854

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=3.3e-14  Score=107.12  Aligned_cols=107  Identities=14%  Similarity=0.132  Sum_probs=84.7

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .+.+++|||++||+|.+|+.++.+|+. |+++|.+ .+++.+++|+...+            ..+..+...|....  +.
T Consensus        41 ~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~------------~~~~~ii~~d~~~~--l~  106 (183)
T d2fpoa1          41 VIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLK------------AGNARVVNSNAMSF--LA  106 (183)
T ss_dssp             HHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT------------CCSEEEECSCHHHH--HS
T ss_pred             ccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcc------------ccceeeeeeccccc--cc
Confidence            367899999999999999999999996 9999995 59999999998765            34567766665422  22


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHH--hcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~--~l~~~g~i~i~~~~  161 (199)
                      ....+||+|++.|| |.......++..+.+  +|+++|.+++....
T Consensus       107 ~~~~~fDlIf~DPP-Y~~~~~~~~l~~l~~~~~L~~~~iIiiE~~~  151 (183)
T d2fpoa1         107 QKGTPHNIVFVDPP-FRRGLLEETINLLEDNGWLADEALIYVESEV  151 (183)
T ss_dssp             SCCCCEEEEEECCS-SSTTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             ccccccCEEEEcCc-cccchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            23568999999877 666778888888876  48999998886543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1e-14  Score=114.49  Aligned_cols=148  Identities=14%  Similarity=0.156  Sum_probs=94.4

Q ss_pred             CCCCCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCC-------CCCC---------
Q 029065           37 CPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMN-------PGSD---------   98 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~-------~~~~---------   98 (199)
                      .+...+|++|||||||+|..++.++..+. +|+|+|+++ +++.|++++...........       ..+.         
T Consensus        46 ~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (257)
T d2a14a1          46 GPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE  125 (257)
T ss_dssp             STTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             cccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHH
Confidence            45667889999999999999988887776 499999965 99999998765432100000       0000         


Q ss_pred             -CCCcEE-EEEeeeCCC-ccccccCCCccEEEEeccccCC----cChHHHHHHHHHhcCCCcEEEEEEEecCh-------
Q 029065           99 -LLGSIQ-AVELDWGNE-DHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEIRST-------  164 (199)
Q Consensus        99 -~~~~i~-~~~~d~~~~-~~~~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~~~g~i~i~~~~~~~-------  164 (199)
                       ....+. ....+.... .......+.||+|++..++.+.    .++..+++.+.++|+|||.++++......       
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~  205 (257)
T d2a14a1         126 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR  205 (257)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred             HHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccc
Confidence             000011 111111111 1122345789999999998764    36778999999999999999998754321       


Q ss_pred             ------hHHHHHHHHH-HhCCeEEEec
Q 029065          165 ------SVHEQMLQMW-KSNFNVKLVP  184 (199)
Q Consensus       165 ------~~~~~~~~~~-~~~~~v~~~~  184 (199)
                            -..+.+.+.+ ..||++..+.
T Consensus       206 ~~~~~~~~~~~~~~~l~~aGf~v~~~~  232 (257)
T d2a14a1         206 EFSCVALEKGEVEQAVLDAGFDIEQLL  232 (257)
T ss_dssp             EEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             cccccCCCHHHHHHHHHHCCCEEEEEE
Confidence                  0134555555 3589886663

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.49  E-value=1.9e-13  Score=106.49  Aligned_cols=127  Identities=12%  Similarity=0.050  Sum_probs=93.1

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .-+|.+|||||||+|..+..+|..+  ..|+++|+++ +++.++.++...              .++.....|...... 
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--------------~ni~~i~~d~~~~~~-  136 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--------------ENIIPILGDANKPQE-  136 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--------------TTEEEEECCTTCGGG-
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--------------cccceEEEeeccCcc-
Confidence            3468899999999999999999875  4699999955 999988875443              256666666554432 


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChh-------HHHHHHHHH-HhCCeEEE
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS-------VHEQMLQMW-KSNFNVKL  182 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~-------~~~~~~~~~-~~~~~v~~  182 (199)
                       .....+|++++...+++......++..+.+.|+|||.++++...+..+       .++...+.+ ..+|++.+
T Consensus       137 -~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aGF~ive  209 (230)
T d1g8sa_         137 -YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVD  209 (230)
T ss_dssp             -GTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEE
T ss_pred             -cccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcCCEEEE
Confidence             334567887777777888889999999999999999999987765421       233334444 35787743

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.48  E-value=2.3e-14  Score=106.95  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=75.1

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      .+|++|||+|||+|.+++.++..|++|+++|.++ +++.+++|+..++..           .++.....|... ......
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~-----------~~v~~~~~d~~~-~~~~~~  107 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLG-----------ARVVALPVEVFL-PEAKAQ  107 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCC-----------CEEECSCHHHHH-HHHHHT
T ss_pred             cCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccc-----------cceeeeehhccc-cccccc
Confidence            4688999999999999999999999999999954 999999999988642           233322222100 011233


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHH-HhcCCCcEEEEEEEe
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIF-ALSGPKTTILLGYEI  161 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~-~~l~~~g~i~i~~~~  161 (199)
                      ..+||+|++++| |.......+...+. .+|+|+|.+++..+.
T Consensus       108 ~~~fD~If~DPP-Y~~~~~~~l~~l~~~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         108 GERFTVAFMAPP-YAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             TCCEEEEEECCC-TTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             CCccceeEEccc-cccCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence            468999999777 55444444443432 468999988876543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.47  E-value=2.3e-13  Score=103.91  Aligned_cols=100  Identities=22%  Similarity=0.260  Sum_probs=71.8

Q ss_pred             CCCCCCCcEEEeCCCcChHHHHHHhhCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           38 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ..+++|++|||+|||+|.+++.++..|+ +|+++|+++ +++.+++|+..++.             ..++...|...   
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-------------~~~~~~~d~~~---  105 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-------------KFKVFIGDVSE---  105 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------------SEEEEESCGGG---
T ss_pred             cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-------------CceEEECchhh---
Confidence            4567899999999999999999999987 599999954 99999999877653             45666655432   


Q ss_pred             ccccCCCccEEEEeccccCCcCh--HHHHHHHHHhcCCCcEEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~--~~~l~~l~~~l~~~g~i~i~~  159 (199)
                         ...+||+|++++|+......  ..++..   .+.+++.++...
T Consensus       106 ---~~~~fD~Vi~nPP~~~~~~~~d~~~l~~---~~~~~~~v~~ih  145 (201)
T d1wy7a1         106 ---FNSRVDIVIMNPPFGSQRKHADRPFLLK---AFEISDVVYSIH  145 (201)
T ss_dssp             ---CCCCCSEEEECCCCSSSSTTTTHHHHHH---HHHHCSEEEEEE
T ss_pred             ---hCCcCcEEEEcCccccccccccHHHHHH---HHhhcccchhcc
Confidence               25689999999987543222  233333   333445555543

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.47  E-value=6.3e-14  Score=105.50  Aligned_cols=109  Identities=16%  Similarity=0.231  Sum_probs=85.2

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~  116 (199)
                      .++|++||||+||+|.+|+.++.+|++ |+++|.+ .+++.+++|+...+.           ..++++.+.|...... .
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~-----------~~~~~i~~~D~~~~l~~~  107 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----------PEKFEVRKMDANRALEQF  107 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc-----------ccccccccccchhhhhhh
Confidence            467999999999999999999999997 9999995 499999999987754           3467888877643211 1


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHH--hcCCCcEEEEEEE
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYE  160 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~--~l~~~g~i~i~~~  160 (199)
                      .....+||+|++.|| |.......++..+..  +|+++|.+++...
T Consensus       108 ~~~~~~fDlIflDPP-Y~~~~~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         108 YEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             HHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             cccCCCcceEEechh-hhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            123458999999777 666777888888765  5899998877544

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5.9e-14  Score=111.33  Aligned_cols=155  Identities=17%  Similarity=0.188  Sum_probs=96.0

Q ss_pred             cCCCCCCCCcEEEeCCCcChHHHHHH-hhCCeEEEeechh-HHHHHHHHHHHhhhcccc-----C----CCCCC------
Q 029065           36 FCPSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQIE-VLPLLKRNVEWNTSRISQ-----M----NPGSD------   98 (199)
Q Consensus        36 ~~~~~~~~~~VLdlGcG~G~~sl~la-~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~-----~----~~~~~------   98 (199)
                      +++..++|++|||||||+|..++..+ +.+.+|+++|+++ +++.+++.+.........     .    .....      
T Consensus        48 f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  127 (263)
T d2g72a1          48 FATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKE  127 (263)
T ss_dssp             HHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHH
T ss_pred             cCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhH
Confidence            56778899999999999998876555 5566799999965 999998766432110000     0    00000      


Q ss_pred             --C-CCcEEEEEeeeCCCccc---cccCCCccEEEEeccccCC----cChHHHHHHHHHhcCCCcEEEEEEEecCh----
Q 029065           99 --L-LGSIQAVELDWGNEDHI---KAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEIRST----  164 (199)
Q Consensus        99 --~-~~~i~~~~~d~~~~~~~---~~~~~~fD~Ii~~~~~~~~----~~~~~~l~~l~~~l~~~g~i~i~~~~~~~----  164 (199)
                        . .........|.......   ....+.||+|++.-++.+.    ..+..+++.+.++|||||.+++....+..    
T Consensus       128 ~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~  207 (263)
T d2g72a1         128 RQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA  207 (263)
T ss_dssp             HHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE
T ss_pred             HHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccccc
Confidence              0 00112333444333211   1224579999999888663    25788899999999999999888764331    


Q ss_pred             ---------hHHHHHHHHH-HhCCeEEEecCCCcCc
Q 029065          165 ---------SVHEQMLQMW-KSNFNVKLVPKAKEST  190 (199)
Q Consensus       165 ---------~~~~~~~~~~-~~~~~v~~~~~~~~~~  190 (199)
                               -..+.+.+.+ ..||++..+.....+.
T Consensus       208 ~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~~~~~~~  243 (263)
T d2g72a1         208 GEARLTVVPVSEEEVREALVRSGYKVRDLRTYIMPA  243 (263)
T ss_dssp             TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEECCG
T ss_pred             CCcccccCCCCHHHHHHHHHHCCCeEEEEEEeeccC
Confidence                     0134455555 3589887655444433

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.2e-14  Score=109.98  Aligned_cols=105  Identities=18%  Similarity=0.192  Sum_probs=77.3

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhC-CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLG-CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g-~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+|.+|||||||+|..+..+++.+ ++|+++|+++ +++.|+++.....             ..+.....++.... ...
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~-~~~  117 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVA-PTL  117 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHG-GGS
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc-------------cccccccccccccc-ccc
Confidence            357899999999999999999875 5699999955 9999998865542             24555555543221 123


Q ss_pred             cCCCccEEEEe-----ccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          119 VAPPFDYIIGT-----DVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       119 ~~~~fD~Ii~~-----~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..++||.|+..     ..+.+..+...+++.+.++|+|||.+.+..
T Consensus       118 ~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~  163 (229)
T d1zx0a1         118 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  163 (229)
T ss_dssp             CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence            35789998743     334455678889999999999999887643

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.42  E-value=2.1e-13  Score=102.69  Aligned_cols=111  Identities=16%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCe-EEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +.+.+||||.||||.+|+.++.+||. |+++|.+ .+++.+++|++..+..          .....+...|.........
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~----------~~~~~~~~~d~~~~l~~~~  111 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----------SEQAEVINQSSLDFLKQPQ  111 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----------TTTEEEECSCHHHHTTSCC
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc----------ccccccccccccccccccc
Confidence            57899999999999999999999996 9999995 4999999999876531          2234555444322211222


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHH--hcCCCcEEEEEEEec
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEIR  162 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~--~l~~~g~i~i~~~~~  162 (199)
                      ...+||+|++.|| |.......++..+..  +|+++|.+++.....
T Consensus       112 ~~~~fDlIFlDPP-Y~~~~~~~~l~~l~~~~~L~~~~liiiE~~~~  156 (183)
T d2ifta1         112 NQPHFDVVFLDPP-FHFNLAEQAISLLCENNWLKPNALIYVETEKD  156 (183)
T ss_dssp             SSCCEEEEEECCC-SSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             cCCcccEEEechh-HhhhhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence            2457999999766 666778888888875  589999988876544

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=1.4e-12  Score=101.27  Aligned_cols=128  Identities=20%  Similarity=0.172  Sum_probs=91.0

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..-+|.+|||||||+|..+.++|.. |  .+|+++|+++ +++.++.++...+              ++.....|.....
T Consensus        70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--------------~~~~i~~d~~~~~  135 (227)
T d1g8aa_          70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--------------NIVPILGDATKPE  135 (227)
T ss_dssp             CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--------------TEEEEECCTTCGG
T ss_pred             ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--------------CceEEEEECCCcc
Confidence            3446899999999999999999975 4  5799999955 9999988765432              5566666655544


Q ss_pred             cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecCh-------hHHHHHHHHHHhCCeEEE
Q 029065          115 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWKSNFNVKL  182 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~-------~~~~~~~~~~~~~~~v~~  182 (199)
                      ........+|+|+..  +.+......++..+.+.|+|||.++++...+..       .+.....+....+|++.+
T Consensus       136 ~~~~~~~~vD~i~~d--~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie  208 (227)
T d1g8aa_         136 EYRALVPKVDVIFED--VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIE  208 (227)
T ss_dssp             GGTTTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred             cccccccceEEEEEE--ccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            443344678888763  455677888999999999999999998765432       122223333456888743

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.40  E-value=7.3e-13  Score=104.58  Aligned_cols=103  Identities=14%  Similarity=0.050  Sum_probs=83.9

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      .++|||||||+|..+..+++.  ..+++++|++++++.+++++...+.           ..++.+...|....     ..
T Consensus        82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~-----------~~ri~~~~~d~~~~-----~p  145 (256)
T d1qzza2          82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL-----------ADRVTVAEGDFFKP-----LP  145 (256)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC-----CS
T ss_pred             CCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCC-----------cceeeeeeeecccc-----cc
Confidence            368999999999999999987  5679999998899999999887654           45788887665421     13


Q ss_pred             CCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..||+|++..++++.+  ....+++.+.+.|+|||.++|.+..
T Consensus       146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            4699999999998754  4568899999999999999988753

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=5.7e-13  Score=105.86  Aligned_cols=95  Identities=12%  Similarity=0.077  Sum_probs=74.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||+|||+|..+..++..+  .+++++|+++ +++.|+++                 ..++.+...|..+   ++.
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~-----------------~~~~~~~~~d~~~---l~~  143 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-----------------YPQVTFCVASSHR---LPF  143 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-----------------CTTSEEEECCTTS---CSB
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc-----------------cccccceeeehhh---ccC
Confidence            57799999999999999999874  5799999955 88888654                 2256777766643   345


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecC
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                      .++.||+|++...+.+       ++.+.++|||||.++++.+...
T Consensus       144 ~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         144 SDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             CTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCc
Confidence            5789999998765533       4678999999999999998653

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.40  E-value=9.2e-13  Score=103.65  Aligned_cols=120  Identities=14%  Similarity=0.106  Sum_probs=89.1

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..-+|.+|||+|||+|.+++.+|+.   ..+|+++|.++ +++.|++|+...+.           ..++++...|+.+. 
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~-----------~~nv~~~~~Di~~~-  149 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----------IGNVRTSRSDIADF-  149 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----------CTTEEEECSCTTTC-
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC-----------CCceEEEEeeeecc-
Confidence            4457899999999999999999975   34799999954 99999999987632           45788888877543 


Q ss_pred             cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeE
Q 029065          115 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV  180 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v  180 (199)
                         ..+..||.|+.+     ..++..++..+.+.|+|||.+.+..+.- .+ .++..+.+. .+|..
T Consensus       150 ---~~~~~fD~V~ld-----~p~p~~~l~~~~~~LKpGG~lv~~~P~i-~Q-v~~~~~~l~~~gf~~  206 (250)
T d1yb2a1         150 ---ISDQMYDAVIAD-----IPDPWNHVQKIASMMKPGSVATFYLPNF-DQ-SEKTVLSLSASGMHH  206 (250)
T ss_dssp             ---CCSCCEEEEEEC-----CSCGGGSHHHHHHTEEEEEEEEEEESSH-HH-HHHHHHHSGGGTEEE
T ss_pred             ---cccceeeeeeec-----CCchHHHHHHHHHhcCCCceEEEEeCCc-Ch-HHHHHHHHHHCCCce
Confidence               235689999874     3567788999999999999987655532 11 344455553 46643

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.39  E-value=2.1e-12  Score=102.20  Aligned_cols=99  Identities=18%  Similarity=0.197  Sum_probs=79.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +|.+|||+|||+|..++.+|+.|+ +|+++|++ .+++.+++|+..|++           ..++++.+.|.....    .
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l-----------~~~v~~~~~D~~~~~----~  171 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFP----G  171 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCC----C
T ss_pred             CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCC-----------CceEEEEEcchHHhc----c
Confidence            588999999999999999998885 79999995 599999999999975           356888888775432    2


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .+.||.|+++++.+.    ..++....++|++||.+.+-.
T Consensus       172 ~~~~D~Ii~~~p~~~----~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         172 ENIADRILMGYVVRT----HEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             CSCEEEEEECCCSSG----GGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEECCCCch----HHHHHHHHhhcCCCCEEEEEe
Confidence            467999999876443    456667778899999875543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=2e-12  Score=99.39  Aligned_cols=99  Identities=25%  Similarity=0.221  Sum_probs=74.8

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .-+|.+|||||||+|..+..+|+. |  .+|+++|+ +++++.|++++...+            ..++.+...|..   .
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~------------~~n~~~~~~d~~---~  137 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG------------IENVIFVCGDGY---Y  137 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT------------CCSEEEEESCGG---G
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc------------ccccccccCchH---H
Confidence            346889999999999999999875 3  46999998 559999999998776            346777665543   2


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .....++||+|++...+.+..      +.+.+.|+|||++++..
T Consensus       138 ~~~~~~~fD~I~~~~~~~~~p------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         138 GVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CCGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEB
T ss_pred             ccccccchhhhhhhccHHHhH------HHHHHhcCCCcEEEEEE
Confidence            223356899999987765432      34567799999987744

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.37  E-value=1.9e-12  Score=99.00  Aligned_cols=103  Identities=16%  Similarity=0.051  Sum_probs=80.4

Q ss_pred             CcEEEeCCCcChHHHHHHhhC--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           44 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      -.|||||||+|...+.+|...  ..++|+|+ ..++..+.+++...+            .+++.+...|...... ....
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~------------l~Nv~~~~~Da~~l~~-~~~~   97 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE------------AQNVKLLNIDADTLTD-VFEP   97 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC------------CSSEEEECCCGGGHHH-HCCT
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHh------------ccCchhcccchhhhhc-ccCc
Confidence            479999999999999999874  56999999 459999999888776            4589999888653321 2346


Q ss_pred             CCccEEEEeccccCCcC--------hHHHHHHHHHhcCCCcEEEEEE
Q 029065          121 PPFDYIIGTDVVYAEHL--------LEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~--------~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      +.+|.|+..-+.-+...        ...+++.+.++|+|||.++|++
T Consensus        98 ~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1          98 GEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             TSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             hhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            78999887755544332        2589999999999999999875

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.9e-12  Score=100.80  Aligned_cols=82  Identities=18%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc---
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~---  115 (199)
                      +..+|||||||+|.+++.++..  +.+|+++|++ ++++.|++|++.|++           ..++.+.+.++.....   
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l-----------~~~~~~~~~~~~~~~~~~~  129 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----------SDLIKVVKVPQKTLLMDAL  129 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTCSSTTTS
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC-----------CcceeeeeeccHHhhhhhh
Confidence            4568999999999999998865  7889999995 499999999999965           4578887776644321   


Q ss_pred             ccccCCCccEEEEeccccC
Q 029065          116 IKAVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~  134 (199)
                      .....+.||+|++|+|+|.
T Consensus       130 ~~~~~~~fD~ivsNPPY~~  148 (250)
T d2h00a1         130 KEESEIIYDFCMCNPPFFA  148 (250)
T ss_dssp             TTCCSCCBSEEEECCCCC-
T ss_pred             hhcccCceeEEEecCcccc
Confidence            1122467999999999985

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=3.4e-12  Score=101.39  Aligned_cols=109  Identities=15%  Similarity=0.145  Sum_probs=80.7

Q ss_pred             CCcEEEeCCCcChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ..+|||+|||+|.+++.++.. .++|+++|++. ++..|++|+..++.           ..++.+...+|.+..  ....
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~-----------~~~~~i~~~~~~~~~--~~~~  177 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-----------SDRFFVRKGEFLEPF--KEKF  177 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-----------TTSEEEEESSTTGGG--GGGT
T ss_pred             ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCC-----------CceeEEeeccccccc--cccc
Confidence            458999999999999998865 45799999955 99999999999875           446788888876432  2234


Q ss_pred             CCccEEEEeccccCCc--------------------ChHHHHHHHHHhcCCCcEEEEEEEecCh
Q 029065          121 PPFDYIIGTDVVYAEH--------------------LLEPLLQTIFALSGPKTTILLGYEIRST  164 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~--------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~~  164 (199)
                      ++||+|++|+|+....                    -+.-+.+.+.++|+|+|.+++.......
T Consensus       178 ~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~Q~  241 (271)
T d1nv8a_         178 ASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGEDQV  241 (271)
T ss_dssp             TTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTTCH
T ss_pred             CcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHHHH
Confidence            6899999999974311                    1222334456889999998887754433

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.34  E-value=3.7e-12  Score=100.82  Aligned_cols=116  Identities=17%  Similarity=0.165  Sum_probs=86.7

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .-+|.+|||+|||+|.+++.+|+. |  .+|+++|. +++++.|++|+.....         ....++.+.+.|..+.  
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~---------~~~~nv~~~~~d~~~~--  162 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG---------QPPDNWRLVVSDLADS--  162 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT---------SCCTTEEEECSCGGGC--
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhcc---------CCCceEEEEecccccc--
Confidence            346899999999999999999976 4  47999999 5599999999876431         1245788888766432  


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHH
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW  174 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~  174 (199)
                       ...++.||.|+..     ..++..++..+.+.|+|||.+.+-.+.-..  .++..+.+
T Consensus       163 -~~~~~~fDaV~ld-----lp~P~~~l~~~~~~LkpGG~lv~~~P~i~Q--v~~~~~~l  213 (264)
T d1i9ga_         163 -ELPDGSVDRAVLD-----MLAPWEVLDAVSRLLVAGGVLMVYVATVTQ--LSRIVEAL  213 (264)
T ss_dssp             -CCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESSHHH--HHHHHHHH
T ss_pred             -cccCCCcceEEEe-----cCCHHHHHHHHHhccCCCCEEEEEeCccCh--HHHHHHHH
Confidence             3346789999863     467889999999999999997665554322  24444555

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.32  E-value=1.5e-11  Score=93.78  Aligned_cols=103  Identities=18%  Similarity=0.054  Sum_probs=80.3

Q ss_pred             CcEEEeCCCcChHHHHHHhhC--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           44 KRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      -.|||||||+|...+.+|+..  ..++|+|++ .++..|..++..++            .+++.+...|...... ....
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~------------l~Ni~~~~~da~~l~~-~~~~   99 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG------------VPNIKLLWVDGSDLTD-YFED   99 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC------------CSSEEEEECCSSCGGG-TSCT
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc------------cccceeeecCHHHHhh-hccC
Confidence            369999999999999999874  459999995 48899988887776            4589999988765432 2346


Q ss_pred             CCccEEEEeccccCCc--------ChHHHHHHHHHhcCCCcEEEEEE
Q 029065          121 PPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~--------~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..+|.|+..-+--+..        ....+++.+.++|+|||.++|++
T Consensus       100 ~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         100 GEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             TCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            7899998774443322        23789999999999999999876

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.29  E-value=7.6e-12  Score=96.80  Aligned_cols=97  Identities=16%  Similarity=0.190  Sum_probs=72.5

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .-+|.+|||||||+|..+..+|+.+.+|+++|. +++.+.|+++...              ..++.+...|....   ..
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~--------------~~nv~~~~~d~~~g---~~  130 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY--------------YNNIKLILGDGTLG---YE  130 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT--------------CSSEEEEESCGGGC---CG
T ss_pred             hcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhc--------------ccccccccCchhhc---ch
Confidence            346789999999999999999999999999998 5588888877543              23778887665322   22


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ..++||.|++...+.+      +...+.+.|+|||++++..
T Consensus       131 ~~~pfD~Iiv~~a~~~------ip~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         131 EEKPYDRVVVWATAPT------LLCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             GGCCEEEEEESSBBSS------CCHHHHHTEEEEEEEEEEE
T ss_pred             hhhhHHHHHhhcchhh------hhHHHHHhcCCCCEEEEEE
Confidence            3578999998766432      2244567899999987743

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=7.2e-12  Score=99.38  Aligned_cols=122  Identities=12%  Similarity=0.033  Sum_probs=87.8

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..-+|.+|||+|||+|.+++.+|+.   +++|+++|.+ ++++.|++|+...+.           ..++.+...|...  
T Consensus       100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~-----------~~~v~~~~~d~~~--  166 (266)
T d1o54a_         100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----------IERVTIKVRDISE--  166 (266)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----------GGGEEEECCCGGG--
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc-----------ccCcEEEeccccc--
Confidence            3457899999999999999999976   3579999995 599999999988764           2356665544321  


Q ss_pred             cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEE
Q 029065          115 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKL  182 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~  182 (199)
                        ......||.|+.     +..++..++..+.++|+|||.+.+-.+.-. . .+...+.+. .+|...+
T Consensus       167 --~~~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~-Q-v~~~~~~l~~~gF~~i~  226 (266)
T d1o54a_         167 --GFDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTTN-Q-VQETLKKLQELPFIRIE  226 (266)
T ss_dssp             --CCSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSHH-H-HHHHHHHHHHSSEEEEE
T ss_pred             --cccccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCccc-H-HHHHHHHHHHCCceeEE
Confidence              123457888765     446888999999999999999876555321 1 344555554 4675433

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.6e-11  Score=94.91  Aligned_cols=106  Identities=21%  Similarity=0.198  Sum_probs=75.6

Q ss_pred             CCCCCCCcEEEeCCCcChHHHHHHhh---CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      +..-+|.+|||+|||+|..+..+|+.   ..+|+++|. +++++.|++++...+...       -...++.+...|..  
T Consensus        72 ~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~-------~~~~~~~~~~gD~~--  142 (224)
T d1i1na_          72 DQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL-------LSSGRVQLVVGDGR--  142 (224)
T ss_dssp             TTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHH-------HHTSSEEEEESCGG--
T ss_pred             hccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccc-------ccccceEEEEeecc--
Confidence            34456889999999999999888875   347999998 559999999987654210       00345677765543  


Q ss_pred             ccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          114 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       114 ~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                       .......+||+|++...+.+.      ...+.+.|+|||.+++..
T Consensus       143 -~~~~~~~~fD~I~~~~~~~~i------p~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         143 -MGYAEEAPYDAIHVGAAAPVV------PQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             -GCCGGGCCEEEEEECSBBSSC------CHHHHHTEEEEEEEEEEE
T ss_pred             -cccchhhhhhhhhhhcchhhc------CHHHHhhcCCCcEEEEEE
Confidence             222345689999998766542      234678899999988754

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.18  E-value=7.7e-11  Score=90.47  Aligned_cols=99  Identities=20%  Similarity=0.277  Sum_probs=76.6

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .-+|.+|||||||+|..+..+|+. |.+|+++|. .++.+.+++++...+            ..++.+.+.|....   .
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g------------~~nv~~~~gd~~~g---~  140 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG------------VKNVHVILGDGSKG---F  140 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT------------CCSEEEEESCGGGC---C
T ss_pred             cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcC------------CceeEEEECccccC---C
Confidence            446789999999999999999976 778999998 559999999998876            45889888776432   2


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ....+||.|++...+..  .+..    +.+.|++||++++..
T Consensus       141 ~~~~pfD~Iiv~~a~~~--ip~~----l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         141 PPKAPYDVIIVTAGAPK--IPEP----LIEQLKIGGKLIIPV  176 (215)
T ss_dssp             GGGCCEEEEEECSBBSS--CCHH----HHHTEEEEEEEEEEE
T ss_pred             cccCcceeEEeeccccc--CCHH----HHHhcCCCCEEEEEE
Confidence            34678999999876643  2333    456789999887654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.5e-11  Score=95.49  Aligned_cols=114  Identities=14%  Similarity=0.088  Sum_probs=79.1

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhh-C--CeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .-+|.+|||+|||+|.+++.+|+. |  .+|+++|++ ++++.|++|+...+..... .-..+...++.+.+.|+.+...
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~-~~~~~~~~nv~~~~~di~~~~~  174 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKL-SHVEEWPDNVDFIHKDISGATE  174 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTT-TCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhh-hhhhccccceeEEecchhhccc
Confidence            446899999999999999999975 4  479999994 5999999999865432110 0112345678888877654321


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                       ......||.|+..     ..++..++..+.++|+|||.+.+-.|
T Consensus       175 -~~~~~~fD~V~LD-----~p~P~~~l~~~~~~LKpGG~lv~~~P  213 (324)
T d2b25a1         175 -DIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVV  213 (324)
T ss_dssp             -------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             -ccCCCCcceEeec-----CcCHHHHHHHHHHhccCCCEEEEEeC
Confidence             1224579999872     24556789999999999998766444

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2e-11  Score=99.53  Aligned_cols=112  Identities=12%  Similarity=0.057  Sum_probs=78.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++.+|||||||+|...+.+|+. ++ +++|+|+++ +++.|++++.......+..   +....++++.+.|+.+..   .
T Consensus       151 ~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~---g~~~~~i~~~~gd~~~~~---~  224 (328)
T d1nw3a_         151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWY---GKKHAEYTLERGDFLSEE---W  224 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHH---TCCCCCEEEEECCTTSHH---H
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhc---cccCCceEEEECcccccc---c
Confidence            4789999999999999988865 55 599999954 9999988765432100000   011347888888875432   1


Q ss_pred             cCC--CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          119 VAP--PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       119 ~~~--~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      .+.  ..|+|+++. +++..++...+..+.+.|||||.++....
T Consensus       225 ~~~~~~advi~~~~-~~f~~~~~~~l~e~~r~LKpGg~iv~~~~  267 (328)
T d1nw3a_         225 RERIANTSVIFVNN-FAFGPEVDHQLKERFANMKEGGRIVSSKP  267 (328)
T ss_dssp             HHHHHHCSEEEECC-TTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             ccccCcceEEEEcc-eecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence            122  357777764 45667778889999999999999877543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=2.6e-11  Score=101.20  Aligned_cols=115  Identities=17%  Similarity=0.237  Sum_probs=74.9

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh-CC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEE-EEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-VELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~-g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~d~~~~~~~  116 (199)
                      -+|.+|||||||+|...+.+|.. |+ +|+|+|+++ +++.|++++...+...+...   ........ ...++...+..
T Consensus       215 kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g---~~~~~~~~~~~~~f~~~~~~  291 (406)
T d1u2za_         215 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG---MRLNNVEFSLKKSFVDNNRV  291 (406)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTT---BCCCCEEEEESSCSTTCHHH
T ss_pred             CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhc---cccccceeeeeechhhcccc
Confidence            35789999999999999988865 54 799999955 99999988765432110000   00112222 12222211111


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ...-..+|+|+++. +.+...+...+..+.+.|+|||.++...
T Consensus       292 d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         292 AELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             HHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            11124578888764 4567788899999999999999987754

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.06  E-value=3.9e-10  Score=86.97  Aligned_cols=105  Identities=14%  Similarity=0.182  Sum_probs=73.8

Q ss_pred             CCCCCCcEEEeCCCcChHHHHHHhh----C----CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEee
Q 029065           39 SKLKGKRVIELGAGCGVAGFGMALL----G----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD  109 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~~sl~la~~----g----~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d  109 (199)
                      ..-++.+|||||||+|..+..+++.    |    .+|+++|. .++++.+++|+...+...       ....++.+...|
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~-------~~~~nv~~~~~d  149 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM-------LDSGQLLIVEGD  149 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH-------HHHTSEEEEESC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhh-------cCccEEEEEecc
Confidence            4456889999999999988888865    2    47999998 559999998876543210       003467888866


Q ss_pred             eCCCccccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          110 WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       110 ~~~~~~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      ....   ....++||.|++...+....      ..+.+.|++||.+++..
T Consensus       150 ~~~~---~~~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         150 GRKG---YPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPV  190 (223)
T ss_dssp             GGGC---CGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred             cccc---cccccceeeEEEEeechhch------HHHHHhcCCCcEEEEEE
Confidence            5422   23356899999987654322      34678899999987644

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.7e-09  Score=88.50  Aligned_cols=126  Identities=13%  Similarity=0.195  Sum_probs=91.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-ccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~  119 (199)
                      ++.+||||.||+|.+|+.+|+.+.+|+++|.+ ++++.|++|+..|+            ..++.+...+..... .....
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~------------i~n~~~~~~~~~~~~~~~~~~  279 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG------------LQNVTFYHENLEEDVTKQPWA  279 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTT------------CCSEEEEECCTTSCCSSSGGG
T ss_pred             CCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcc------------cccceeeecchhhhhhhhhhh
Confidence            46789999999999999999999999999994 59999999999998            457888887765432 22233


Q ss_pred             CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecC
Q 029065          120 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK  185 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~  185 (199)
                      ...||+||..+|=-.   ...++..+.+. +|.-++|++-....  .-.++......+|+++.+..
T Consensus       280 ~~~~d~vilDPPR~G---~~~~~~~l~~~-~~~~ivYVSCnp~T--laRDl~~l~~~gy~l~~i~~  339 (358)
T d1uwva2         280 KNGFDKVLLDPARAG---AAGVMQQIIKL-EPIRIVYVSCNPAT--LARDSEALLKAGYTIARLAM  339 (358)
T ss_dssp             TTCCSEEEECCCTTC---CHHHHHHHHHH-CCSEEEEEESCHHH--HHHHHHHHHHTTCEEEEEEE
T ss_pred             hccCceEEeCCCCcc---HHHHHHHHHHc-CCCEEEEEeCCHHH--HHHHHHHHHHCCCeEeEEEE
Confidence            567999999877433   23577777665 67788899754321  12233233356898887754

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.5e-09  Score=83.37  Aligned_cols=107  Identities=14%  Similarity=0.078  Sum_probs=83.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~  116 (199)
                      +.++|||||||+|.-++.+|..   +.+|+.+|.+ +..+.|++++...+.           ..++++...|..+... .
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~-----------~~~i~~~~Gda~e~l~~~  127 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----------EHKIDLRLKPALETLDEL  127 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc-----------cceEEEEEeehhhcchhh
Confidence            4689999999999999999964   5689999994 599999999998875           4578888766543211 1


Q ss_pred             --cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 --KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 --~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                        ....++||+|+..   ...+.....++.+.++|+|||.+++-....
T Consensus       128 ~~~~~~~~fD~ifiD---~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~  172 (219)
T d2avda1         128 LAAGEAGTFDVAVVD---ADKENCSAYYERCLQLLRPGGILAVLRVLW  172 (219)
T ss_dssp             HHTTCTTCEEEEEEC---SCSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             hhhcccCCccEEEEe---CCHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence              1224689999986   345678888999999999999988866544

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.94  E-value=3.5e-09  Score=82.12  Aligned_cols=129  Identities=12%  Similarity=0.098  Sum_probs=84.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+.+|+|+|+|.|++|+.+|..  ..+|+.+|.. .-+...+..+...+            ..++.+.+...++......
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~------------L~n~~i~~~R~E~~~~~~~  137 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ------------LENTTFCHDRAETFGQRKD  137 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT------------CSSEEEEESCHHHHTTCTT
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhC------------CCCcEEEeehhhhcccccc
Confidence            4578999999999999999975  4569999973 33344444343333            2366766654432222222


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHH-hCCeEEEecCC
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKA  186 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~  186 (199)
                      ..++||+|++..+    ..+..++..+..+++++|.+++-......+..+.....+. .++++..+...
T Consensus       138 ~~~~~D~v~sRAv----a~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~~~v~~~  202 (239)
T d1xdza_         138 VRESYDIVTARAV----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENIHSF  202 (239)
T ss_dssp             TTTCEEEEEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ccccceEEEEhhh----hCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEEEEEEEE
Confidence            3568999999765    7899999999999999998766555444443444444443 35555544433

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=2.4e-09  Score=81.45  Aligned_cols=121  Identities=19%  Similarity=0.292  Sum_probs=84.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      .+++|+|+|||.|++|+.+|...  .+|+.+|. ..-+...+..+...+            ..++++.+...++..    
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~------------L~nv~v~~~R~E~~~----  128 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK------------LENIEPVQSRVEEFP----  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT------------CSSEEEEECCTTTSC----
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcC------------Ccceeeeccchhhhc----
Confidence            45799999999999999999764  46999997 335555555555544            347888876655432    


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCeEEEecCC
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA  186 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  186 (199)
                      ...+||+|++..+    ..+..++..+..+++++|.+++-......    .-.+.+..+|+++.+...
T Consensus       129 ~~~~fD~V~sRA~----~~~~~ll~~~~~~l~~~g~~~~~KG~~~~----eEl~~~~~~~~~~~~~~~  188 (207)
T d1jsxa_         129 SEPPFDGVISRAF----ASLNDMVSWCHHLPGEQGRFYALKGQMPE----DEIALLPEEYQVESVVKL  188 (207)
T ss_dssp             CCSCEEEEECSCS----SSHHHHHHHHTTSEEEEEEEEEEESSCCH----HHHHTSCTTEEEEEEEEE
T ss_pred             cccccceehhhhh----cCHHHHHHHHHHhcCCCcEEEEECCCCHH----HHHHhhhcCCEEEEEEEe
Confidence            2458999998665    68899999999999999996665543322    222444556766544433

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.87  E-value=5.6e-09  Score=80.48  Aligned_cols=105  Identities=14%  Similarity=0.043  Sum_probs=81.6

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-c
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-~  116 (199)
                      ..++|||||+++|.-++.+|..   +++|+.+|. ++..+.|++++...+.           .+++++...+..+.-. +
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~-----------~~~i~~~~g~a~~~L~~l  127 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----------DHKIDFREGPALPVLDEM  127 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc-----------ccceeeeehHHHHHHHHH
Confidence            4689999999999999999864   568999998 4588999999998875           3478888866643211 1


Q ss_pred             ---cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          117 ---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       117 ---~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                         ....++||+|+...   +...+...++.+.++|+|||.+++-.-
T Consensus       128 ~~~~~~~~~fD~iFiDa---~k~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         128 IKDEKNHGSYDFIFVDA---DKDNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             HHCGGGTTCBSEEEECS---CSTTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             HhccccCCceeEEEecc---chhhhHHHHHHHHhhcCCCcEEEEccC
Confidence               11246899999963   557788999999999999999777543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=3.6e-09  Score=80.86  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=75.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~  116 (199)
                      +.++|||+|||+|..++.+|..   +.+|+++|. +++.+.|+.++...+.           ..++++...|..+.. .+
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl-----------~~~i~l~~Gd~~e~l~~l  124 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL-----------QDKVTILNGASQDLIPQL  124 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHGGGH
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC-----------Cccceeeeccccccccch
Confidence            4679999999999999999964   678999999 4599999999988865           347888887764321 11


Q ss_pred             --cccCCCccEEEEeccccCCcChHH--HHHHHHHhcCCCcEEEEEEEecC
Q 029065          117 --KAVAPPFDYIIGTDVVYAEHLLEP--LLQTIFALSGPKTTILLGYEIRS  163 (199)
Q Consensus       117 --~~~~~~fD~Ii~~~~~~~~~~~~~--~l~~l~~~l~~~g~i~i~~~~~~  163 (199)
                        ......||+|+...   +.+....  .+....++|+|||.+++-+-.+.
T Consensus       125 ~~~~~~~~~D~ifiD~---~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~  172 (214)
T d2cl5a1         125 KKKYDVDTLDMVFLDH---WKDRYLPDTLLLEKCGLLRKGTVLLADNVIVP  172 (214)
T ss_dssp             HHHSCCCCEEEEEECS---CGGGHHHHHHHHHHTTCEEEEEEEEESCCCCC
T ss_pred             hhcccccccceeeecc---cccccccHHHHHHHhCccCCCcEEEEeCcCCC
Confidence              12245799998862   2233222  24445567999997665443343

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.79  E-value=7.7e-09  Score=80.54  Aligned_cols=95  Identities=18%  Similarity=0.064  Sum_probs=74.5

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ..+|||||||+|..++.+++.  +.+++..|++++++.+                  ...+++++...|+.+.      .
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~------------------~~~~ri~~~~gd~~~~------~  137 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENA------------------PPLSGIEHVGGDMFAS------V  137 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTC------------------CCCTTEEEEECCTTTC------C
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhcc------------------CCCCCeEEecCCcccc------c
Confidence            369999999999999999977  4568999988764321                  1145889888887522      2


Q ss_pred             CCccEEEEeccccCCc--ChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +..|+++...++++.+  ....+++.+.+.|+|||.++|.+..
T Consensus       138 p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v  180 (244)
T d1fp1d2         138 PQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI  180 (244)
T ss_dssp             CCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             ccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence            3569999999998854  4778899999999999999998864

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.73  E-value=3.4e-08  Score=79.67  Aligned_cols=125  Identities=12%  Similarity=0.062  Sum_probs=84.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh----C---CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           42 KGKRVIELGAGCGVAGFGMALL----G---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~----g---~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ++.+|||.+||+|.+.+.+...    +   .+++|+|+++ ++..|+.++..++.             .....+.|... 
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~-  182 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------------KMTLLHQDGLA-  182 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------------CCEEEESCTTS-
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-------------hhhhhcccccc-
Confidence            3568999999999887777632    1   2599999954 99999988877753             33444444321 


Q ss_pred             ccccccCCCccEEEEeccccCCc------------------ChHHHHHHHHHhcCCCcEEEEEEEec--ChhHHHHHHHH
Q 029065          114 DHIKAVAPPFDYIIGTDVVYAEH------------------LLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQM  173 (199)
Q Consensus       114 ~~~~~~~~~fD~Ii~~~~~~~~~------------------~~~~~l~~l~~~l~~~g~i~i~~~~~--~~~~~~~~~~~  173 (199)
                         .....+||+|++++|+....                  ....++..+.++|+|+|.+.+..+..  .......+++.
T Consensus       183 ---~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~  259 (328)
T d2f8la1         183 ---NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKF  259 (328)
T ss_dssp             ---CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHH
T ss_pred             ---ccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHH
Confidence               12356899999999973211                  13347888999999999988877753  11224456666


Q ss_pred             HHhCCeEEEe
Q 029065          174 WKSNFNVKLV  183 (199)
Q Consensus       174 ~~~~~~v~~~  183 (199)
                      +...+.+..+
T Consensus       260 L~~~~~i~~i  269 (328)
T d2f8la1         260 IKKNGHIEGI  269 (328)
T ss_dssp             HHHHEEEEEE
T ss_pred             HHhCCcEEEE
Confidence            6665655433

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.69  E-value=3.5e-08  Score=76.69  Aligned_cols=94  Identities=13%  Similarity=0.069  Sum_probs=73.4

Q ss_pred             CcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           44 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      ++|||||||+|..++.+++.  ..+++..|.+++++.+.                  ..+++++...|+...      ..
T Consensus        82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~------------------~~~rv~~~~gD~f~~------~p  137 (244)
T d1fp2a2          82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS------------------GSNNLTYVGGDMFTS------IP  137 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC------------------CBTTEEEEECCTTTC------CC
T ss_pred             eEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCc------------------ccCceEEEecCcccC------CC
Confidence            68999999999999999877  56799999987644321                  145899988887532      24


Q ss_pred             CccEEEEeccccCCc--ChHHHHHHHHHhcCCC---cEEEEEEEe
Q 029065          122 PFDYIIGTDVVYAEH--LLEPLLQTIFALSGPK---TTILLGYEI  161 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~--~~~~~l~~l~~~l~~~---g~i~i~~~~  161 (199)
                      .+|+++...++++.+  ....+++.+.+.|+||   |.++|.+..
T Consensus       138 ~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~  182 (244)
T d1fp2a2         138 NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV  182 (244)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred             CCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence            689999999998754  4578899999999998   677777653

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.59  E-value=2.1e-07  Score=74.70  Aligned_cols=129  Identities=16%  Similarity=0.073  Sum_probs=84.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..++||.||.|.|.....+.+.  ..+|+++|+ +++++.|++.+...... .      -..+++++...|....  ...
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~-~------~~d~rv~i~~~Da~~~--l~~  147 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQG-A------FDDPRAVLVIDDARAY--LER  147 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTT-G------GGCTTEEEEESCHHHH--HHH
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccC-c------cCCCceEEEEchHHHH--hhh
Confidence            4689999999999888877765  347999999 55999999876432110 0      0135788888887643  223


Q ss_pred             cCCCccEEEEec--cccCCc-----ChHHHHHHHHHhcCCCcEEEEEEEe---cChhHHHHHHHHHHhCCe
Q 029065          119 VAPPFDYIIGTD--VVYAEH-----LLEPLLQTIFALSGPKTTILLGYEI---RSTSVHEQMLQMWKSNFN  179 (199)
Q Consensus       119 ~~~~fD~Ii~~~--~~~~~~-----~~~~~l~~l~~~l~~~g~i~i~~~~---~~~~~~~~~~~~~~~~~~  179 (199)
                      ...+||+|+...  +.....     .-.++++.+++.|+|+|++.+-...   ....+.....+.+...|.
T Consensus       148 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~  218 (312)
T d1uira_         148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFR  218 (312)
T ss_dssp             CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCS
T ss_pred             cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCc
Confidence            356899999642  332211     2367999999999999987664322   223344555566666563

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.57  E-value=6.8e-08  Score=72.38  Aligned_cols=114  Identities=18%  Similarity=0.189  Sum_probs=67.5

Q ss_pred             CCcEEEeCCCcCh----HHHHHHhh----C--CeEEEeechh-HHHHHHHHHHHhhhc--------cccCCCCCCCC---
Q 029065           43 GKRVIELGAGCGV----AGFGMALL----G--CNVITTDQIE-VLPLLKRNVEWNTSR--------ISQMNPGSDLL---  100 (199)
Q Consensus        43 ~~~VLdlGcG~G~----~sl~la~~----g--~~v~~~D~~~-~l~~a~~~~~~~~~~--------~~~~~~~~~~~---  100 (199)
                      ..+||+.|||+|-    +++.+...    +  .+++++|++. +++.|+.-.-.....        .+.+.+..+..   
T Consensus        25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~  104 (193)
T d1af7a2          25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  104 (193)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccce
Confidence            4599999999995    33333322    2  2599999955 988887533111000        00011111111   


Q ss_pred             --------CcEEEEEeeeCCCccccccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEE
Q 029065          101 --------GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       101 --------~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                              ..+.+...+....  .....++||+|+|.+++..  .+....+++.+.+.|+|||.+++.
T Consensus       105 ~~~~~~~~~~v~~~~~~~~~~--~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         105 VRVRQELANYVEFSSVNLLEK--QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EEECHHHHTTEEEEECCTTCS--SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eehHHHHHHHHHHhhhhcccc--ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                    1223333222211  1223578999999998854  455689999999999999988875

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.49  E-value=1.2e-07  Score=73.42  Aligned_cols=95  Identities=14%  Similarity=0.083  Sum_probs=71.0

Q ss_pred             CCcEEEeCCCcChHHHHHHhh--CCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           43 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ..+|||||||+|..++.+++.  +.+++..|++++++.++                  ...++++...|+...      .
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~------------------~~~r~~~~~~d~~~~------~  137 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAP------------------SYPGVEHVGGDMFVS------I  137 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCC------------------CCTTEEEEECCTTTC------C
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcc------------------cCCceEEeccccccc------C
Confidence            468999999999999999987  45799999977532211                  134788888777432      1


Q ss_pred             CCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          121 PPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      +..|+++...+++.  .+....+++.+.+.|+|+|.++|.+..
T Consensus       138 P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~  180 (243)
T d1kyza2         138 PKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI  180 (243)
T ss_dssp             CCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred             CCcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence            23566777777765  346888999999999999999888654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.48  E-value=2.3e-07  Score=76.28  Aligned_cols=113  Identities=19%  Similarity=0.106  Sum_probs=77.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHh-hCC-eEEEeechh-HHHHHHHHHHHhhhccccCC---CCCCCCCcEEEEEeeeCCCcc
Q 029065           42 KGKRVIELGAGCGVAGFGMAL-LGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMN---PGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~-~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ++++|||..||+|.-|+..|+ .|+ .|++.|+++ +++.+++|+..|+.......   ........+.+.+.|...  .
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~--~  122 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANR--L  122 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHH--H
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhh--h
Confidence            688999999999999997776 455 599999955 99999999999974210000   000011234444444321  1


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      .......||+|...+  |  .....+++...+.++.+|.+.++-.
T Consensus       123 ~~~~~~~fDvIDiDP--f--Gs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         123 MAERHRYFHFIDLDP--F--GSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HHHSTTCEEEEEECC--S--SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hHhhcCcCCcccCCC--C--CCcHHHHHHHHHHhccCCEEEEEec
Confidence            112245799998865  3  3456799999999999999988864

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=1.3e-07  Score=70.88  Aligned_cols=107  Identities=18%  Similarity=0.180  Sum_probs=77.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc--
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI--  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--  116 (199)
                      ++..+||++||+|-.+..++..  +.+|+++|. +++++.+++++...+             .++.+.+.++.+....  
T Consensus        23 ~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-------------~r~~~~~~~f~~~~~~~~   89 (192)
T d1m6ya2          23 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-------------DRVSLFKVSYREADFLLK   89 (192)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-------------TTEEEEECCGGGHHHHHH
T ss_pred             CCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-------------ccccchhHHHhhHHHHHH
Confidence            5789999999999888888765  567999999 559999999876542             3688888776544321  


Q ss_pred             cccCCCccEEEEeccc---------cCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVV---------YAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~---------~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ....++||.|+..-.+         ...+.....+....++|+|||.+.+..-.
T Consensus        90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~  143 (192)
T d1m6ya2          90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH  143 (192)
T ss_dssp             HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred             HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence            1224689999875222         11235677888888999999988665543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.46  E-value=1.8e-07  Score=72.22  Aligned_cols=75  Identities=12%  Similarity=0.012  Sum_probs=54.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      -++.+|||||||+|.++..++..+++|+++|++. +.+.++++...              ..++++.+.|....+.   .
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~--------------~~n~~i~~~D~l~~~~---~   82 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--------------HDNFQVLNKDILQFKF---P   82 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--------------CCSEEEECCCGGGCCC---C
T ss_pred             CCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhc--------------ccchhhhhhhhhhccc---c
Confidence            3678999999999999999999999999999955 77777665422              3478888888765432   1


Q ss_pred             CCCccEEEEeccc
Q 029065          120 APPFDYIIGTDVV  132 (199)
Q Consensus       120 ~~~fD~Ii~~~~~  132 (199)
                      ......|++|=|+
T Consensus        83 ~~~~~~vv~NLPY   95 (235)
T d1qama_          83 KNQSYKIFGNIPY   95 (235)
T ss_dssp             SSCCCEEEEECCG
T ss_pred             ccccceeeeeehh
Confidence            2233456666554

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.37  E-value=2.1e-06  Score=68.19  Aligned_cols=128  Identities=13%  Similarity=0.045  Sum_probs=84.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..++||-||.|.|.....+.+.  ..+|+++|+ +++++.+++.+..+....        ..+++++...|....  ...
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~--------~d~rv~v~~~Da~~~--l~~  158 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF--------DDPRAEIVIANGAEY--VRK  158 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHH--GGG
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccc--------cCCCcEEEhhhHHHH--Hhc
Confidence            3689999999999888888765  356999999 559999988765543211        135788888776533  233


Q ss_pred             cCCCccEEEEecc--ccCC---cChHHHHHHHHHhcCCCcEEEEEEEe--cChhHHHHHHHHHHhCCe
Q 029065          119 VAPPFDYIIGTDV--VYAE---HLLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN  179 (199)
Q Consensus       119 ~~~~fD~Ii~~~~--~~~~---~~~~~~l~~l~~~l~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~~  179 (199)
                      ..++||+|++..+  ....   -.-.++++.+++.|+|+|++.+-...  ..........+.+..-|.
T Consensus       159 ~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~  226 (295)
T d1inla_         159 FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFP  226 (295)
T ss_dssp             CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcc
Confidence            4568999997522  1111   13578999999999999987664433  223334445555554453

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.36  E-value=1.9e-06  Score=67.78  Aligned_cols=129  Identities=11%  Similarity=-0.015  Sum_probs=87.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C-CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..++||-||.|.|.....+.+. + .+|+++|+ +++++.|++....+...        -...++++...|....  ...
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~--------~~d~r~~i~~~D~~~~--l~~  144 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK--------LDDPRVDVQVDDGFMH--IAK  144 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT--------TTSTTEEEEESCSHHH--HHT
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccc--------ccCCCeEEEechHHHH--Hhh
Confidence            3579999999999988888875 3 46999999 55999998876554311        1134788887665432  222


Q ss_pred             cCCCccEEEEeccc--cCCc--ChHHHHHHHHHhcCCCcEEEEEEEe--cChhHHHHHHHHHHhCCeE
Q 029065          119 VAPPFDYIIGTDVV--YAEH--LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~--~~~~--~~~~~l~~l~~~l~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~~v  180 (199)
                      .+.+||+|+...+-  ....  .-.++.+.+++.|+|+|++..-...  ........+.+.+..-|..
T Consensus       145 ~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~  212 (274)
T d1iy9a_         145 SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPI  212 (274)
T ss_dssp             CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             cCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCc
Confidence            35689999986321  1111  3678999999999999987664332  2334455666666665643

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.34  E-value=1.4e-06  Score=68.54  Aligned_cols=131  Identities=17%  Similarity=0.069  Sum_probs=82.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCC-eEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~-~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +.++||-||+|.|.....+.+... +|+++|+ +++++.|++-...+.......  .....+++++...|....-  . .
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~--~~~~d~rv~i~~~Da~~~l--~-~  146 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAM--LNGKHEKAKLTIGDGFEFI--K-N  146 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHH--HTTCCSSEEEEESCHHHHH--H-H
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhh--hccCCCCceEEEChHHHHH--h-c
Confidence            468999999999988877776644 5999999 559999987553321100000  0012457888887764221  1 2


Q ss_pred             CCCccEEEEeccccCCc-----ChHHHHHHHHHhcCCCcEEEEEEEe--cChhHHHHHHHHHHhCC
Q 029065          120 APPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF  178 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~~-----~~~~~l~~l~~~l~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~  178 (199)
                      .++||+|+... .....     .-.++++.+++.|+|+|++.+-...  ..........+.+..-|
T Consensus       147 ~~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F  211 (276)
T d1mjfa_         147 NRGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVF  211 (276)
T ss_dssp             CCCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHC
T ss_pred             cCCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhC
Confidence            46899999753 22211     1368899999999999987664432  22333444555555545

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.2e-06  Score=69.00  Aligned_cols=76  Identities=18%  Similarity=0.183  Sum_probs=58.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++..|||||+|+|.++..++..+++|++++++. +++..++.......           ..++++...|+...+     .
T Consensus        21 ~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~-----------~~~~~~i~~D~l~~~-----~   84 (278)
T d1zq9a1          21 PTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPV-----------ASKLQVLVGDVLKTD-----L   84 (278)
T ss_dssp             TTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTT-----------GGGEEEEESCTTTSC-----C
T ss_pred             CCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhcc-----------ccchhhhHHHHhhhh-----h
Confidence            567999999999999999999999999999955 88888777654321           347888888886443     2


Q ss_pred             CCccEEEEecccc
Q 029065          121 PPFDYIIGTDVVY  133 (199)
Q Consensus       121 ~~fD~Ii~~~~~~  133 (199)
                      ..++.||+|-|++
T Consensus        85 ~~~~~vV~NLPY~   97 (278)
T d1zq9a1          85 PFFDTCVANLPYQ   97 (278)
T ss_dssp             CCCSEEEEECCGG
T ss_pred             hhhhhhhcchHHH
Confidence            3567888886653

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.24  E-value=3.1e-08  Score=77.03  Aligned_cols=76  Identities=14%  Similarity=0.099  Sum_probs=54.7

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++.+|||||||+|.++..++..+.+|+++|++. +++.++++...              ..++++.+.|+...+.   ..
T Consensus        29 ~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~--------------~~n~~ii~~D~l~~~~---~~   91 (245)
T d1yuba_          29 ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL--------------NTRVTLIHQDILQFQF---PN   91 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT--------------CSEEEECCSCCTTTTC---CC
T ss_pred             CCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh--------------ccchhhhhhhhhcccc---cc
Confidence            467999999999999999999999999999855 65555443321              2478888888765542   23


Q ss_pred             CCccEEEEeccccC
Q 029065          121 PPFDYIIGTDVVYA  134 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~  134 (199)
                      ..++.|+++=|++-
T Consensus        92 ~~~~~vv~NLPY~I  105 (245)
T d1yuba_          92 KQRYKIVGNIPYHL  105 (245)
T ss_dssp             SSEEEEEEECCSSS
T ss_pred             ceeeeEeeeeehhh
Confidence            45667777766433

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=5.5e-06  Score=65.40  Aligned_cols=129  Identities=16%  Similarity=0.079  Sum_probs=84.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..++||-||.|.|.....+.+.  ..+|+++|+ +++++.|++-...+....        ...++++...|....  +..
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~--------~d~rv~i~~~Da~~~--l~~  147 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY--------SSSKLTLHVGDGFEF--MKQ  147 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHH--HHT
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcccc--------CCCCceEEEccHHHH--Hhc
Confidence            4579999999999988888875  346999999 559999998765442211        135788888775432  222


Q ss_pred             cCCCccEEEEecc--ccC--CcChHHHHHHHHHhcCCCcEEEEEEEec--ChhHHHHHHHHHHhCCeE
Q 029065          119 VAPPFDYIIGTDV--VYA--EHLLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNV  180 (199)
Q Consensus       119 ~~~~fD~Ii~~~~--~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~~--~~~~~~~~~~~~~~~~~v  180 (199)
                      ..++||+|++..+  ...  .-.-..+++.+++.|+|+|++.+-....  .........+.+...|..
T Consensus       148 ~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~  215 (285)
T d2o07a1         148 NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPV  215 (285)
T ss_dssp             CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSE
T ss_pred             CCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCe
Confidence            3568999998521  111  1124567999999999999977655432  233344555555554533

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=8.9e-06  Score=59.88  Aligned_cols=120  Identities=18%  Similarity=0.214  Sum_probs=78.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C--CeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc--
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI--  116 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g--~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--  116 (199)
                      ++.+||||||++|-++..+... +  ..|+++|+..+                      +......+.+.|+.+....  
T Consensus        22 ~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----------------------~~i~~~~~~~~d~~~~~~~~~   79 (180)
T d1ej0a_          22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----------------------DPIVGVDFLQGDFRDELVMKA   79 (180)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----------------------CCCTTEEEEESCTTSHHHHHH
T ss_pred             CCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----------------------cccCCceEeecccccchhhhh
Confidence            4679999999999999988864 3  45999996432                      0134567777777554321  


Q ss_pred             ---cccCCCccEEEEeccccCCc-----------ChHHHHHHHHHhcCCCcEEEEEEEecChhHHHHHHHHHHhCCe-EE
Q 029065          117 ---KAVAPPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN-VK  181 (199)
Q Consensus       117 ---~~~~~~fD~Ii~~~~~~~~~-----------~~~~~l~~l~~~l~~~g~i~i~~~~~~~~~~~~~~~~~~~~~~-v~  181 (199)
                         .....++|+|++........           .....+....+.|++||.+++-.-. ... ...++..+...|+ |.
T Consensus        80 ~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~-g~~-~~~l~~~l~~~F~~V~  157 (180)
T d1ej0a_          80 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ-GEG-FDEYLREIRSLFTKVK  157 (180)
T ss_dssp             HHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES-STT-HHHHHHHHHHHEEEEE
T ss_pred             hhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec-Ccc-HHHHHHHHHhhcCEEE
Confidence               12246899999986543321           2445566677889999997776643 222 4567777776664 44


Q ss_pred             EecC
Q 029065          182 LVPK  185 (199)
Q Consensus       182 ~~~~  185 (199)
                      .+.+
T Consensus       158 ~~KP  161 (180)
T d1ej0a_         158 VRKP  161 (180)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            4443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.18  E-value=2.5e-06  Score=68.14  Aligned_cols=128  Identities=14%  Similarity=0.024  Sum_probs=80.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..++||-||.|.|.....+.+..  .+|+++|+ +++++.+++-+..+....        ..+++++...|....  ...
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~--------~dprv~i~i~Da~~~--l~~  175 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF--------SHPKLDLFCGDGFEF--LKN  175 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG--------GCTTEEEECSCHHHH--HHH
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcccc--------CCCCeEEEEchHHHH--HHh
Confidence            36799999999999888888753  57999999 559999988764432111        134778777665432  223


Q ss_pred             cCCCccEEEEecc--ccCC--cChHHHHHHHHHhcCCCcEEEEEEEe--cChhHHHHHHHHHHhCCe
Q 029065          119 VAPPFDYIIGTDV--VYAE--HLLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN  179 (199)
Q Consensus       119 ~~~~fD~Ii~~~~--~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~--~~~~~~~~~~~~~~~~~~  179 (199)
                      ...+||+|+...+  ....  -.-.++++.+++.|+|+|++..-...  ...+......+.+...|.
T Consensus       176 ~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~  242 (312)
T d2b2ca1         176 HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFP  242 (312)
T ss_dssp             CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccc
Confidence            3568999997522  1111  13567899999999999987664332  223334455555555453

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.14  E-value=1.9e-06  Score=64.68  Aligned_cols=115  Identities=14%  Similarity=0.085  Sum_probs=71.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++.+|||.|||+|.+...+...   ...++++|+.+ ++..                     .......+.|+...    
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------------------~~~~~~~~~~~~~~----   73 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------------------PPWAEGILADFLLW----   73 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------------------CTTEEEEESCGGGC----
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------------------cccceeeeeehhcc----
Confidence            5679999999999876666533   34599999854 3221                     12334445554322    


Q ss_pred             ccCCCccEEEEeccccCCc-----------------------------ChHHHHHHHHHhcCCCcEEEEEEEecC--hhH
Q 029065          118 AVAPPFDYIIGTDVVYAEH-----------------------------LLEPLLQTIFALSGPKTTILLGYEIRS--TSV  166 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~-----------------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~--~~~  166 (199)
                      .....||+|++++++....                             ....++....++|+++|.+.+..+..-  ...
T Consensus        74 ~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~  153 (223)
T d2ih2a1          74 EPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLED  153 (223)
T ss_dssp             CCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGG
T ss_pred             ccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcc
Confidence            2246899999998863211                             134567778889999999877776531  122


Q ss_pred             HHHHHHHHHhCCeEE
Q 029065          167 HEQMLQMWKSNFNVK  181 (199)
Q Consensus       167 ~~~~~~~~~~~~~v~  181 (199)
                      .+.+.+.+.+.+.+.
T Consensus       154 ~~~lR~~l~~~~~i~  168 (223)
T d2ih2a1         154 FALLREFLAREGKTS  168 (223)
T ss_dssp             GHHHHHHHHHHSEEE
T ss_pred             hHHHHHHHHhcCCEE
Confidence            344555555545443

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.07  E-value=1.1e-05  Score=66.93  Aligned_cols=128  Identities=13%  Similarity=0.043  Sum_probs=85.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---------------CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEE
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA  105 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---------------g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~  105 (199)
                      .+.+|+|-.||+|.+-+.+...               ...+.|.|++ .+...|+-|+..++..          ......
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~----------~~~~~i  231 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----------TDRSPI  231 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----------SSCCSE
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc----------ccccee
Confidence            4679999999999777666542               1248999995 4888999898887642          223334


Q ss_pred             EEeeeCCCccccccCCCccEEEEeccccCCc-----------------ChHHHHHHHHHhcCCCcEEEEEEEec---Chh
Q 029065          106 VELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----------------LLEPLLQTIFALSGPKTTILLGYEIR---STS  165 (199)
Q Consensus       106 ~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~-----------------~~~~~l~~l~~~l~~~g~i~i~~~~~---~~~  165 (199)
                      ...|....    .....||+|++++|+....                 ....++..+.++|++||.+.+..+..   ...
T Consensus       232 ~~~d~l~~----~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~  307 (425)
T d2okca1         232 VCEDSLEK----EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAG  307 (425)
T ss_dssp             EECCTTTS----CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCST
T ss_pred             ecCchhhh----hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhh
Confidence            44443221    2346899999999983211                 12358999999999999988877752   222


Q ss_pred             HHHHHHHHHHhCCeEEEe
Q 029065          166 VHEQMLQMWKSNFNVKLV  183 (199)
Q Consensus       166 ~~~~~~~~~~~~~~v~~~  183 (199)
                      ....+.+.+...+.++.+
T Consensus       308 ~~~~iR~~Ll~~~~i~aI  325 (425)
T d2okca1         308 AGETIRKRLLQDFNLHTI  325 (425)
T ss_dssp             HHHHHHHHHHHHEEEEEE
T ss_pred             hHHHHHHHHHHhcchhHh
Confidence            345566666665555433

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3.5e-05  Score=60.85  Aligned_cols=80  Identities=16%  Similarity=0.097  Sum_probs=58.7

Q ss_pred             CCCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+|.+|||+.||+|-=+..+|..   ...|+++|.+ .-++.++.++...+            ..++.+...|.......
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g------------~~~~~~~~~d~~~~~~~  160 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG------------VSCCELAEEDFLAVSPS  160 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT------------CCSEEEEECCGGGSCTT
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC------------ccceeeeehhhhhhccc
Confidence            35889999999999877777743   4569999995 47888999998887            34677777666543322


Q ss_pred             cccCCCccEEEEeccc
Q 029065          117 KAVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~  132 (199)
                      ....+.||.|++..+.
T Consensus       161 ~~~~~~fD~VL~DaPC  176 (293)
T d2b9ea1         161 DPRYHEVHYILLDPSC  176 (293)
T ss_dssp             CGGGTTEEEEEECCCC
T ss_pred             ccccceeeEEeecCcc
Confidence            2223679999987664

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.03  E-value=2e-05  Score=62.26  Aligned_cols=128  Identities=15%  Similarity=0.065  Sum_probs=83.1

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-C-CeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g-~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +.++||-||.|.|.....+.+. + .+|+++|+ +++++.+++-...+....        ..++++....|....-. ..
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~--------~~~r~~i~~~Da~~~l~-~~  150 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY--------EDPRVNLVIGDGVAFLK-NA  150 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--------GSTTEEEEESCHHHHHH-TS
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccc--------cCCCcEEEEccHHHHHh-hc
Confidence            4579999999999988888876 3 46999999 559999988765432211        13578887766532211 12


Q ss_pred             cCCCccEEEEecc--ccCC--cChHHHHHHHHHhcCCCcEEEEEEEec--ChhHHHHHHHHHHhCC
Q 029065          119 VAPPFDYIIGTDV--VYAE--HLLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNF  178 (199)
Q Consensus       119 ~~~~fD~Ii~~~~--~~~~--~~~~~~l~~l~~~l~~~g~i~i~~~~~--~~~~~~~~~~~~~~~~  178 (199)
                      .+++||+|+...+  ....  -.-.++++.+++.|+|+|++.+-....  .........+.+..-|
T Consensus       151 ~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF  216 (290)
T d1xj5a_         151 AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIF  216 (290)
T ss_dssp             CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC
T ss_pred             cccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhc
Confidence            2458999997422  1111  125678999999999999877754432  2333444555555433

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.01  E-value=6.6e-05  Score=59.76  Aligned_cols=116  Identities=17%  Similarity=0.062  Sum_probs=76.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      .|.+|||+.||+|-=+..++..   ...+++.|.+ .-+..++.++...+.            .++.....|-   ....
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~------------~~i~~~~~d~---~~~~  180 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------------LNVILFHSSS---LHIG  180 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------------CSEEEESSCG---GGGG
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh------------hccccccccc---cccc
Confidence            6789999999999877777643   3469999984 477888888887763            3455444332   2223


Q ss_pred             ccCCCccEEEEeccccCCc----------------------ChHHHHHHHHHhcCCCcEEEEEEEecC----hhHHHHHH
Q 029065          118 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRS----TSVHEQML  171 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~----~~~~~~~~  171 (199)
                      .....||.|+...+.-...                      ...+++....++++|||.++-++..-.    ..+.+.|+
T Consensus       181 ~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L  260 (313)
T d1ixka_         181 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWAL  260 (313)
T ss_dssp             GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             cccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHH
Confidence            3467899998876542211                      244566667777899998777765433    33445555


Q ss_pred             H
Q 029065          172 Q  172 (199)
Q Consensus       172 ~  172 (199)
                      +
T Consensus       261 ~  261 (313)
T d1ixka_         261 D  261 (313)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=2.5e-06  Score=66.25  Aligned_cols=79  Identities=10%  Similarity=-0.016  Sum_probs=53.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc-
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-  119 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-  119 (199)
                      ++..|||||||+|.++..++..+.+|+++|++. +++..+.....+              .++++.+.|....+..... 
T Consensus        21 ~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~--------------~~~~ii~~D~l~~~~~~~~~   86 (252)
T d1qyra_          21 KGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLG--------------PKLTIYQQDAMTFNFGELAE   86 (252)
T ss_dssp             TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTG--------------GGEEEECSCGGGCCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhc--------------cchhHHhhhhhhhccccccc
Confidence            478999999999999999999999999999955 777776533222              3678888777654321111 


Q ss_pred             -CCCccEEEEeccccC
Q 029065          120 -APPFDYIIGTDVVYA  134 (199)
Q Consensus       120 -~~~fD~Ii~~~~~~~  134 (199)
                       .+.--.|++|=|++-
T Consensus        87 ~~~~~~~vvgNlPY~I  102 (252)
T d1qyra_          87 KMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             HHTSCEEEEEECCTTT
T ss_pred             ccCCCeEEEecchHHH
Confidence             122235667655433

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.83  E-value=5.7e-05  Score=58.17  Aligned_cols=101  Identities=19%  Similarity=0.291  Sum_probs=61.7

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCCC
Q 029065           44 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  122 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~  122 (199)
                      .+|||+-||.|..++.+|..|++|++++.+. +...++.++.......   ........++++.+.|-.+.  +....+.
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~---~~~~~~~~ri~li~~Ds~~~--L~~~~~~  164 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADA---EIGGWLQERLQLIHASSLTA--LTDITPR  164 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCT---TTHHHHHHHEEEEESCHHHH--STTCSSC
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCc---hhHHHHhhhheeecCcHHHH--HhccCCC
Confidence            3899999999999999999999999999854 5555555554432100   00000123678877664322  2223467


Q ss_pred             ccEEEEeccccCCc----ChHHHHHHHHHhcC
Q 029065          123 FDYIIGTDVVYAEH----LLEPLLQTIFALSG  150 (199)
Q Consensus       123 fD~Ii~~~~~~~~~----~~~~~l~~l~~~l~  150 (199)
                      ||+|...++ |...    ....-++.++.++.
T Consensus       165 ~DvIYlDPM-Fp~~~Ksa~~kk~m~~l~~l~~  195 (250)
T d2oyra1         165 PQVVYLDPM-FPHKQKSALVKKEMRVFQSLVG  195 (250)
T ss_dssp             CSEEEECCC-CCCCCC-----HHHHHHHHHSC
T ss_pred             CCEEEECCC-CccccccccchhHHHHHHhhcc
Confidence            999998554 5422    34445555666554

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=0.00011  Score=57.59  Aligned_cols=118  Identities=16%  Similarity=0.074  Sum_probs=76.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhC--CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      +|.+|||+.||+|-=+..++..+  .+|+++|.+. -+..+++++...+.            ..+.....+..  .....
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~------------~~~~~~~~~~~--~~~~~  167 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM------------KATVKQGDGRY--PSQWC  167 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC------------CCEEEECCTTC--THHHH
T ss_pred             ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc------------cceeeeccccc--cchhc
Confidence            57899999999998777777654  4699999854 78888888888864            23333332211  11112


Q ss_pred             cCCCccEEEEeccccCCc----------------------ChHHHHHHHHHhcCCCcEEEEEEEecC----hhHHHHHHH
Q 029065          119 VAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQ  172 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~----------------------~~~~~l~~l~~~l~~~g~i~i~~~~~~----~~~~~~~~~  172 (199)
                      ..+.||.|+...+.-...                      .-..++....++|+|||.++-++..-.    ..+.+.|++
T Consensus       168 ~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~  247 (284)
T d1sqga2         168 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQ  247 (284)
T ss_dssp             TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred             ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHH
Confidence            346799999876652211                      144566666777899998877765433    334555555


Q ss_pred             H
Q 029065          173 M  173 (199)
Q Consensus       173 ~  173 (199)
                      .
T Consensus       248 ~  248 (284)
T d1sqga2         248 R  248 (284)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=9.5e-05  Score=62.77  Aligned_cols=133  Identities=8%  Similarity=-0.112  Sum_probs=80.8

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh--------------------CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCC
Q 029065           42 KGKRVIELGAGCGVAGFGMALL--------------------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLL  100 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~--------------------g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~  100 (199)
                      .+.+|+|-.||+|.+-+.+...                    ...+.|.|+. .+...|+-|+..++....       ..
T Consensus       164 ~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~-------i~  236 (524)
T d2ar0a1         164 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN-------LD  236 (524)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB-------GG
T ss_pred             cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccccc-------cc
Confidence            4669999999999766655432                    1248999994 588889888877753100       00


Q ss_pred             CcEEEEEeeeCCCccccccCCCccEEEEeccccCCc--------------ChHHHHHHHHHhcCCCcEEEEEEEec---C
Q 029065          101 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------LLEPLLQTIFALSGPKTTILLGYEIR---S  163 (199)
Q Consensus       101 ~~i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~--------------~~~~~l~~l~~~l~~~g~i~i~~~~~---~  163 (199)
                      ..-.....+...  .......+||+|++|+|+....              .--.++..+.+.|++||.+.+..|..   .
T Consensus       237 ~~~~~~~~~~l~--~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~Lf~  314 (524)
T d2ar0a1         237 HGGAIRLGNTLG--SDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFE  314 (524)
T ss_dssp             GTBSEEESCTTS--HHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHC
T ss_pred             ccchhhhhhhhh--hcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHhhh
Confidence            001111111110  0011245799999999984321              12348999999999999988887742   2


Q ss_pred             hhHHHHHHHHHHhCCeEEEe
Q 029065          164 TSVHEQMLQMWKSNFNVKLV  183 (199)
Q Consensus       164 ~~~~~~~~~~~~~~~~v~~~  183 (199)
                      ......+++.+.+.+.+..+
T Consensus       315 ~~~~~~iR~~Ll~~~~i~aI  334 (524)
T d2ar0a1         315 GGKGTDIRRDLMDKCHLHTI  334 (524)
T ss_dssp             CTHHHHHHHHHHHHEEEEEE
T ss_pred             hhhhHHHHHHHHHcCCceEE
Confidence            22234566666655555433

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.56  E-value=0.00013  Score=55.49  Aligned_cols=101  Identities=14%  Similarity=0.072  Sum_probs=62.2

Q ss_pred             CCCcEEEeCCCcChHHHHHHh----h--CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           42 KGKRVIELGAGCGVAGFGMAL----L--GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~----~--g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      +.++|||||++.|.-++.++.    .  .++|+++|+.. ....     ..            ....++++...|..+..
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-----~~------------~~~~~I~~i~gDs~~~~  142 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-----PA------------SDMENITLHQGDCSDLT  142 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-----CG------------GGCTTEEEEECCSSCSG
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-----hh------------ccccceeeeecccccHH
Confidence            578999999999965555553    1  45799999732 1110     01            11357888888876554


Q ss_pred             ccccc-CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          115 HIKAV-APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       115 ~~~~~-~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..... ...+|+|+..+. +.......-+ .+..+|++||.+++.+..
T Consensus       143 ~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         143 TFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             GGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred             HHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcCC
Confidence            43322 346888877553 3222111112 345789999999887764

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.28  E-value=0.00037  Score=50.97  Aligned_cols=104  Identities=17%  Similarity=0.111  Sum_probs=72.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc--cc
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI--KA  118 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--~~  118 (199)
                      +|..++|..+|.|-.+..+...+.+|+++|. ++++..++..   .             ..++.+.+.++.+....  ..
T Consensus        18 ~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~---~-------------~~~~~~~~~~f~~~~~~l~~~   81 (182)
T d1wg8a2          18 PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL---H-------------LPGLTVVQGNFRHLKRHLAAL   81 (182)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT---C-------------CTTEEEEESCGGGHHHHHHHT
T ss_pred             CCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc---c-------------ccceeEeehHHHHHHHHHHHc
Confidence            6789999999999888888877889999998 5588777642   1             33678887766544322  11


Q ss_pred             cCCCccEEEEeccccC---------CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          119 VAPPFDYIIGTDVVYA---------EHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~---------~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ..+.+|.|+..=-+-.         .+.....+.....+++++|.+.+..-+
T Consensus        82 ~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh  133 (182)
T d1wg8a2          82 GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH  133 (182)
T ss_dssp             TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence            2357999987522211         123555788888889999987766554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.76  E-value=0.0028  Score=44.89  Aligned_cols=97  Identities=21%  Similarity=0.180  Sum_probs=59.2

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc--
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--  115 (199)
                      -+|.+||=+|||. |+..+.+++ .|++|+++|.++ -++.+++.    +.             ...+ ..+-...+.  
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga-------------~~~~-~~~~~~~~~~~   86 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA-------------DVTL-VVDPAKEEESS   86 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC-------------SEEE-ECCTTTSCHHH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC-------------cEEE-eccccccccch
Confidence            3567899999985 777777775 488999999844 55666542    21             1111 111000000  


Q ss_pred             ----c-cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          116 ----I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       116 ----~-~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                          . ......+|+|+-.-      .-...+....++++++|.+.+....
T Consensus        87 ~~~~~~~~~g~g~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          87 IIERIRSAIGDLPNVTIDCS------GNEKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             HHHHHHHHSSSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             hhhhhhcccccCCceeeecC------CChHHHHHHHHHHhcCCceEEEecC
Confidence                0 01135689887542      3456788888999999998776543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.67  E-value=0.0012  Score=50.31  Aligned_cols=96  Identities=14%  Similarity=0.030  Sum_probs=53.1

Q ss_pred             CCcEEEeCCCcChHHHHHHhhC--CeEEEeec-hh--HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           43 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IE--VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g--~~v~~~D~-~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      +.+|+|||||.|-.+..++...  ..|.+.|+ -.  ..+....   ..+            -.-+++..   . .+...
T Consensus        67 ~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~---~~~------------~ni~~~~~---~-~dv~~  127 (257)
T d2p41a1          67 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMS---TYG------------WNLVRLQS---G-VDVFF  127 (257)
T ss_dssp             CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCC---STT------------GGGEEEEC---S-CCTTT
T ss_pred             CCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCcccc---ccc------------cccccchh---h-hhHHh
Confidence            4589999999999999999663  45888875 11  0000000   000            00122211   1 11112


Q ss_pred             ccCCCccEEEEeccccCC------cChHHHHHHHHHhcCCCcEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAE------HLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~------~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      ....+.|+|+|.-.-...      ...-.+++.+.+.|+|||.+.+
T Consensus       128 l~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv  173 (257)
T d2p41a1         128 IPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV  173 (257)
T ss_dssp             SCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             cCCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence            235689999986322111      0133567777788999997555

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.0011  Score=47.27  Aligned_cols=96  Identities=15%  Similarity=0.045  Sum_probs=57.3

Q ss_pred             CCCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC-cc
Q 029065           40 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~~  115 (199)
                      .-+|.+||-+|+|. |+.++.+++ .|++|+++|.+ +-++.+++.    +..              .+  .+..+. +.
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga~--------------~~--i~~~~~~~~   84 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GAD--------------HY--IATLEEGDW   84 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TCS--------------EE--EEGGGTSCH
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CCc--------------EE--eeccchHHH
Confidence            34688999999985 888877775 59999999984 466666542    311              11  122111 11


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .....+.||+|+....--...    .+....+.++++|.+.+..
T Consensus        85 ~~~~~~~~d~vi~~~~~~~~~----~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          85 GEKYFDTFDLIVVCASSLTDI----DFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             HHHSCSCEEEEEECCSCSTTC----CTTTGGGGEEEEEEEEECC
T ss_pred             HHhhhcccceEEEEecCCccc----hHHHHHHHhhccceEEEec
Confidence            222346799887642211111    1345667789999876654

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.58  E-value=0.0014  Score=47.11  Aligned_cols=96  Identities=23%  Similarity=0.297  Sum_probs=64.7

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ++..+|+=||+|. |+.++..|+ +|++|+..|. .+.++..+.....+                ++...   .+...+.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~----------------~~~~~---~~~~~l~   90 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR----------------VELLY---SNSAEIE   90 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG----------------SEEEE---CCHHHHH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc----------------ceeeh---hhhhhHH
Confidence            5678999999997 888888774 5999999998 44766665543222                23222   1111122


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI  155 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i  155 (199)
                      ..-...|+||..-.+-....+.-+-+...+.+|||..+
T Consensus        91 ~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVI  128 (168)
T d1pjca1          91 TAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVI  128 (168)
T ss_dssp             HHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEE
T ss_pred             HhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEE
Confidence            22347999999877666666666667777888888754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.015  Score=44.07  Aligned_cols=84  Identities=15%  Similarity=0.198  Sum_probs=58.6

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..++||.||=-|++.|+   ++..+++.|++|+++|.+ +.++.+.+.+...+.           ..++.+..+|..+.+
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-----------~~~~~~~~~Dls~~~   74 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY-----------PGTLIPYRCDLSNEE   74 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------SSEEEEEECCTTCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CceEEEEEccCCCHH
Confidence            45899999999999875   566666789999999984 466666665554431           236777888987664


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ...       ..-++.|++|.+....
T Consensus        75 ~v~~~v~~~~~~~g~iD~lVnnAg~~  100 (257)
T d1xg5a_          75 DILSMFSAIRSQHSGVDICINNAGLA  100 (257)
T ss_dssp             HHHHHHHHHHHHHCCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEeccccc
Confidence            221       1136799998876554

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0021  Score=45.68  Aligned_cols=94  Identities=23%  Similarity=0.244  Sum_probs=57.4

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      -+|.+||=+|||. |+.++.+++ .|++++++|. ++-++.+++    .+..              .+  .+..+.....
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~----lGad--------------~~--i~~~~~~~~~   88 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGAD--------------EV--VNSRNADEMA   88 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTCS--------------EE--EETTCHHHHH
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc----cCCc--------------EE--EECchhhHHH
Confidence            4678999999986 888887776 4889888886 445555543    2311              11  2333222222


Q ss_pred             ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          118 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ...+.+|+++-.-      .-...+....+.++++|.+.+...
T Consensus        89 ~~~~~~D~vid~~------g~~~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          89 AHLKSFDFILNTV------AAPHNLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             TTTTCEEEEEECC------SSCCCHHHHHTTEEEEEEEEECCC
T ss_pred             HhcCCCceeeeee------ecchhHHHHHHHHhcCCEEEEecc
Confidence            2345799887542      112335566788999998776543

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.14  E-value=0.0071  Score=47.11  Aligned_cols=72  Identities=21%  Similarity=0.193  Sum_probs=49.7

Q ss_pred             CCCCCcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           40 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      ...+.+||||.||.|-+++.+...|.+ |.++|+.+ +++..+.|...                .   .+.|+.+.... 
T Consensus         8 ~~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~----------------~---~~~Di~~~~~~-   67 (327)
T d2c7pa1           8 QLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE----------------K---PEGDITQVNEK-   67 (327)
T ss_dssp             TTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC----------------C---CBSCGGGSCGG-
T ss_pred             cCCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC----------------C---CcCchhcCchh-
Confidence            345789999999999999999999998 66689854 77766666411                1   12444433221 


Q ss_pred             ccCCCccEEEEeccc
Q 029065          118 AVAPPFDYIIGTDVV  132 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~  132 (199)
                       ....+|+++++++.
T Consensus        68 -~~~~~Dll~ggpPC   81 (327)
T d2c7pa1          68 -TIPDHDILCAGFPC   81 (327)
T ss_dssp             -GSCCCSEEEEECCC
T ss_pred             -hcceeeeeeccccc
Confidence             23579999998775

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.10  E-value=0.0087  Score=43.32  Aligned_cols=81  Identities=11%  Similarity=0.146  Sum_probs=54.9

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      ..+++||+||=.|++.|.   ++..+++.|++|+.++.+ +-++.+.+.+..+.              .+.+..+|..+.
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~d~~~~   83 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--------------KVNVTAAETADD   83 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--------------TCCCEEEECCSH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc--------------chhhhhhhcccH
Confidence            567899999999987763   667777889999999984 46666666555443              234455665544


Q ss_pred             ccccccCCCccEEEEeccc
Q 029065          114 DHIKAVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~~~~~~~fD~Ii~~~~~  132 (199)
                      ......-+..|+++.+..+
T Consensus        84 ~~~~~~~~~iDilin~Ag~  102 (191)
T d1luaa1          84 ASRAEAVKGAHFVFTAGAI  102 (191)
T ss_dssp             HHHHHHTTTCSEEEECCCT
T ss_pred             HHHHHHhcCcCeeeecCcc
Confidence            4333334678999877543

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.08  E-value=0.013  Score=44.61  Aligned_cols=108  Identities=9%  Similarity=-0.016  Sum_probs=67.7

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCC------------------------------------------eEEEeech-hHHHHH
Q 029065           43 GKRVIELGAGCGVAGFGMALLGC------------------------------------------NVITTDQI-EVLPLL   79 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~------------------------------------------~v~~~D~~-~~l~~a   79 (199)
                      +..++|--||+|.+.+.+|....                                          ++.+.|+. .+++.|
T Consensus        51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A  130 (249)
T d1o9ga_          51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  130 (249)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence            45799999999999988886421                                          23455653 356655


Q ss_pred             H---HHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc--ccCCCccEEEEeccccC-----C----cChHHHHHHH
Q 029065           80 K---RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--AVAPPFDYIIGTDVVYA-----E----HLLEPLLQTI  145 (199)
Q Consensus        80 ~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--~~~~~fD~Ii~~~~~~~-----~----~~~~~~l~~l  145 (199)
                      +   .|+...++           ...+.+...|+.......  ......++||+|+|+-.     .    ..+..+...+
T Consensus       131 ~~~r~n~~~Agl-----------~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l  199 (249)
T d1o9ga_         131 RRLRERLTAEGG-----------ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL  199 (249)
T ss_dssp             HHHHHHHHHTTS-----------SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC-----------CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHH
Confidence            3   45555543           457888888875443221  12356899999998743     1    1256666677


Q ss_pred             HHhcCCCcEEEEEEEe
Q 029065          146 FALSGPKTTILLGYEI  161 (199)
Q Consensus       146 ~~~l~~~g~i~i~~~~  161 (199)
                      .+.+.....++++...
T Consensus       200 ~~~~p~~s~~~it~~~  215 (249)
T d1o9ga_         200 ASALPAHAVIAVTDRS  215 (249)
T ss_dssp             HHHSCTTCEEEEEESS
T ss_pred             HccCCCCcEEEEeCch
Confidence            7778655555555443

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0028  Score=50.15  Aligned_cols=41  Identities=12%  Similarity=0.120  Sum_probs=33.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh-CC-eEEEeechh-HHHHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALL-GC-NVITTDQIE-VLPLLKRN   82 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~-g~-~v~~~D~~~-~l~~a~~~   82 (199)
                      ++.+|||||.|.|.++..+... ++ +|+++|... ..+..++.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~   86 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAK   86 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh
Confidence            5678999999999999999876 44 699999854 76766554

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.023  Score=40.02  Aligned_cols=96  Identities=20%  Similarity=0.158  Sum_probs=59.1

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc-
Q 029065           42 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  116 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~-  116 (199)
                      +|.+||=+|||+ |+..+.+++ .|+ +|+++|.++ -++.+++.    +..              .+...+-.+.... 
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga~--------------~~~~~~~~~~~~~~   87 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GAD--------------LVLQISKESPQEIA   87 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCS--------------EEEECSSCCHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CCc--------------cccccccccccccc
Confidence            567899999987 777777775 488 599999844 65655432    311              1111111111000 


Q ss_pred             ----cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 ----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ----~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                          ......+|+|+-.-      --...++...++++++|.+++....
T Consensus        88 ~~~~~~~g~g~Dvvid~~------G~~~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2          88 RKVEGQLGCKPEVTIECT------GAEASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             HHHHHHHTSCCSEEEECS------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred             ccccccCCCCceEEEecc------CCchhHHHHHHHhcCCCEEEEEecC
Confidence                01235789887652      3456788899999999988776543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.98  E-value=0.00088  Score=48.31  Aligned_cols=93  Identities=20%  Similarity=0.194  Sum_probs=57.7

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHhh-CC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~~-g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      -+|.+||=+|||. |+.++.+++. |+ +|+++|.++ -++.+++    .+..              .+  ++..+....
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa~--------------~~--i~~~~~~~~   85 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGAT--------------DI--LNYKNGHIE   85 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTCS--------------EE--ECGGGSCHH
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCcc--------------cc--ccccchhHH
Confidence            3577899999986 8888888865 76 599999854 5555543    2211              11  222221100


Q ss_pred             ----c-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 ----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ----~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                          . .....+|+|+-.-      .-...++...++++|+|.+.+..
T Consensus        86 ~~v~~~t~g~G~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          86 DQVMKLTNGKGVDRVIMAG------GGSETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             HHHHHHTTTSCEEEEEECS------SCTTHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHhhccCcceEEEcc------CCHHHHHHHHHHHhcCCEEEEEe
Confidence                1 1124599887642      22356777788999999887754

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.87  E-value=0.008  Score=44.88  Aligned_cols=43  Identities=21%  Similarity=0.179  Sum_probs=38.3

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVE   84 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~   84 (199)
                      +|..|||-.||+|..++++...|-+.+|+|++ +.++.|++.+.
T Consensus       212 ~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         212 PNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            57899999999999999999999999999994 59999988764

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.78  E-value=0.008  Score=45.51  Aligned_cols=45  Identities=24%  Similarity=0.291  Sum_probs=39.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHHHh
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWN   86 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~   86 (199)
                      +|..|||-.||+|..++++..+|-+.+|+|++ +.++.|++++...
T Consensus       207 ~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         207 PGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             CCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999995 4999998887543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.78  E-value=0.015  Score=44.71  Aligned_cols=69  Identities=19%  Similarity=0.209  Sum_probs=47.6

Q ss_pred             CcEEEeCCCcChHHHHHHhhCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           44 KRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      .+||||.||.|-+++.+...|.+ |.++|+.+ +++..+.|..                  -.....|+.+....  ..+
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~------------------~~~~~~Di~~~~~~--~~~   60 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------------------AKLIKGDISKISSD--EFP   60 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC------------------SEEEESCTTTSCGG--GSC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------------------CCCccCChhhCCHh--Hcc
Confidence            36999999999989888888998 66889854 5555554421                  13345666544322  235


Q ss_pred             CccEEEEeccc
Q 029065          122 PFDYIIGTDVV  132 (199)
Q Consensus       122 ~fD~Ii~~~~~  132 (199)
                      ..|++++++|.
T Consensus        61 ~~dll~~g~PC   71 (324)
T d1dcta_          61 KCDGIIGGPPC   71 (324)
T ss_dssp             CCSEEEECCCC
T ss_pred             cccEEeecccc
Confidence            79999998766

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0017  Score=46.49  Aligned_cols=91  Identities=20%  Similarity=0.219  Sum_probs=56.9

Q ss_pred             CCCCcEEEeCC-C-cChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGA-G-CGVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGc-G-~G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      -+|.+||=.|+ | .|..++.+|+. |++|++++.++ -++.+++    .+..            .  +  +|..+.+..
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga~------------~--v--i~~~~~~~~   86 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGAH------------E--V--FNHREVNYI   86 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS------------E--E--EETTSTTHH
T ss_pred             CCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCcc------------c--c--cccccccHH
Confidence            36789999997 4 47888887854 89999988643 4455433    2321            1  1  233222211


Q ss_pred             -----cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          117 -----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       117 -----~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                           ......+|+|+.+-       -...++...+.++|+|+++..
T Consensus        87 ~~i~~~t~~~g~d~v~d~~-------g~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          87 DKIKKYVGEKGIDIIIEML-------ANVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHHHHHHCTTCEEEEEESC-------HHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHhhhhhccCCceEEeecc-------cHHHHHHHHhccCCCCEEEEE
Confidence                 11245699988642       235678888899999987765

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.40  E-value=0.0021  Score=47.09  Aligned_cols=100  Identities=20%  Similarity=0.078  Sum_probs=60.5

Q ss_pred             CCCCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .-+|.+||-+|||. |+.++.+++ .|+ +|+++|.+ +-++.|++.    +..              .+  .+....+.
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~--------------~~--~~~~~~~~   82 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE--------------IA--DLSLDTPL   82 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE--------------EE--ETTSSSCH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc--------------EE--EeCCCcCH
Confidence            34678999999997 877777775 466 59999984 466666543    211              11  11111110


Q ss_pred             ----c-cccCCCccEEEEeccc---------cCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 ----I-KAVAPPFDYIIGTDVV---------YAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 ----~-~~~~~~fD~Ii~~~~~---------~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                          . ......+|+++-+--.         .........++...+.++|+|.+.+..
T Consensus        83 ~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          83 HEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             HHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             HHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence                0 0113468988743211         112235678999999999999887664

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.40  E-value=0.065  Score=40.54  Aligned_cols=84  Identities=21%  Similarity=0.305  Sum_probs=58.3

Q ss_pred             CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec--hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      -|..++||++|=-|++.|+   ++..++..|++|+++|.  .+.++.+...+...+             ..+.+...|..
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~D~~   78 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG-------------SDAACVKANVG   78 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTT
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC-------------CceeeEeCCCC
Confidence            4566889999999998874   66777788999999986  346666666555553             35777788887


Q ss_pred             CCccc-------cccCCCccEEEEecccc
Q 029065          112 NEDHI-------KAVAPPFDYIIGTDVVY  133 (199)
Q Consensus       112 ~~~~~-------~~~~~~fD~Ii~~~~~~  133 (199)
                      +.+..       ....+..|+++.+....
T Consensus        79 ~~~~v~~~~~~~~~~~g~idilV~nag~~  107 (272)
T d1g0oa_          79 VVEDIVRMFEEAVKIFGKLDIVCSNSGVV  107 (272)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCccccccccc
Confidence            65422       11125789998776543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.32  E-value=0.01  Score=42.94  Aligned_cols=109  Identities=15%  Similarity=0.164  Sum_probs=61.7

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEE-------EEeee
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-------VELDW  110 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~~d~  110 (199)
                      ++..+||=||+|. |+.++..|. +|++|+..|.+ +.++..+......- ......+     ...+.       ..-+|
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i-~~~~~~~-----~~~~~~~gyA~~~s~~~  100 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFI-TVDDEAM-----KTAETAGGYAKEMGEEF  100 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEEC-CC---------------------------
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceE-EEecccc-----ccccccccchhhcCHHH
Confidence            4567999999997 888888774 69999999984 46666654321110 0000000     00000       00011


Q ss_pred             CCCc--cccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEE
Q 029065          111 GNED--HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI  155 (199)
Q Consensus       111 ~~~~--~~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i  155 (199)
                      ....  .+...-...|+||..-.+-....+.-+-+.+.+.++||..+
T Consensus       101 ~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVI  147 (183)
T d1l7da1         101 RKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVI  147 (183)
T ss_dssp             -CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEE
T ss_pred             HHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEE
Confidence            0000  00111246899999877776666666677788888998764

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.009  Score=46.56  Aligned_cols=73  Identities=19%  Similarity=0.090  Sum_probs=45.1

Q ss_pred             CCcEEEeCCCcChHHHHHHhhCC--e-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           43 GKRVIELGAGCGVAGFGMALLGC--N-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        43 ~~~VLdlGcG~G~~sl~la~~g~--~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ..+|+||.||.|-.++.+...|.  + |.++|+.. +++..+.|..                 .......|+.+......
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~-----------------~~~~~~~di~~~~~~~~   64 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----------------HTQLLAKTIEGITLEEF   64 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------------TSCEECSCGGGCCHHHH
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC-----------------CCCcccCchhhCCHhHc
Confidence            35799999999988888877775  4 67889854 6665555421                 11233334433322112


Q ss_pred             cCCCccEEEEeccc
Q 029065          119 VAPPFDYIIGTDVV  132 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~  132 (199)
                      ....+|+++++++.
T Consensus        65 ~~~~~Dll~ggpPC   78 (343)
T d1g55a_          65 DRLSFDMILMSPPC   78 (343)
T ss_dssp             HHHCCSEEEECCC-
T ss_pred             CCCCccEEEeeccc
Confidence            22468999988775

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.23  E-value=0.024  Score=40.40  Aligned_cols=95  Identities=17%  Similarity=0.169  Sum_probs=60.3

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-
Q 029065           41 LKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-  115 (199)
                      -+|.+||=+|||. |+.++.+++. |++ |+.+|.++ -++.+++.    +..              .+  .+....+. 
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga~--------------~~--i~~~~~~~~   86 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GAT--------------DC--LNPRELDKP   86 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS--------------EE--ECGGGCSSC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CCC--------------cc--cCCccchhh
Confidence            4678999999987 9999888865 775 88899854 55555442    211              11  11111110 


Q ss_pred             -----ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCC-cEEEEEEEe
Q 029065          116 -----IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLGYEI  161 (199)
Q Consensus       116 -----~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~-g~i~i~~~~  161 (199)
                           .....+.+|+++-.      .-....+....+.++++ |.+.+....
T Consensus        87 ~~~~~~~~~~~G~d~vie~------~G~~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2          87 VQDVITELTAGGVDYSLDC------AGTAQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             HHHHHHHHHTSCBSEEEES------SCCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             hhhhHhhhhcCCCcEEEEe------cccchHHHHHHHHhhcCCeEEEecCCC
Confidence                 01124578988754      34567788888899886 887776543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.027  Score=42.47  Aligned_cols=91  Identities=19%  Similarity=0.162  Sum_probs=60.2

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      +.||.+|=-|++.|+   ++..+++.|++|+++|.+ +.++.+...+....           ...++.+..+|..+.+..
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~-----------~~~~~~~~~~Dv~~~~~v   69 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQF-----------EPQKTLFIQCDVADQQQL   69 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTS-----------CGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc-----------CCCcEEEEEeecCCHHHH
Confidence            468999999998774   566667789999999984 45555555443221           023677888888766422


Q ss_pred             c-------ccCCCccEEEEeccccCCcChHHHH
Q 029065          117 K-------AVAPPFDYIIGTDVVYAEHLLEPLL  142 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~~~~~~~~~~l  142 (199)
                      .       ..-++.|++|.+..+.....+++.+
T Consensus        70 ~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~  102 (254)
T d2gdza1          70 RDTFRKVVDHFGRLDILVNNAGVNNEKNWEKTL  102 (254)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCSSSHHHHH
T ss_pred             HHHHHHHHHHcCCcCeecccccccccccchhee
Confidence            1       1125899999887776666544433

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.20  E-value=0.0092  Score=45.92  Aligned_cols=43  Identities=12%  Similarity=0.057  Sum_probs=37.5

Q ss_pred             CCCcEEEeCCCcChHHHHHHhhCCeEEEeech-hHHHHHHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVE   84 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~   84 (199)
                      +|..|||..||+|..++++...|-+.+|+|++ +.++.|+..+.
T Consensus       250 ~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~  293 (320)
T d1booa_         250 PDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFL  293 (320)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGS
T ss_pred             CCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHH
Confidence            57899999999999999999999999999995 58888876653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.19  E-value=0.019  Score=40.75  Aligned_cols=93  Identities=17%  Similarity=0.237  Sum_probs=58.0

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHhh-CCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGC-GVAGFGMALL-GCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~~-g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      -+|.+||=+|||. |..++.+++. |++ |+.+|.++ -++.+++.    +..              ++  +|..+.+..
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~--------------~~--i~~~~~~~~   86 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT--------------HV--INSKTQDPV   86 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS--------------EE--EETTTSCHH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe--------------EE--EeCCCcCHH
Confidence            3578899999986 7777777754 776 66778744 55555442    211              11  222222111


Q ss_pred             ----cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 ----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ----~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                          ...++.||+|+-.      .--...++...++++++|.+.+..
T Consensus        87 ~~i~~~t~gg~D~vid~------~G~~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          87 AAIKEITDGGVNFALES------TGSPEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HHHHHHTTSCEEEEEEC------SCCHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHcCCCCcEEEEc------CCcHHHHHHHHhcccCceEEEEEe
Confidence                1124579988764      234577888899999999987654

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=95.10  E-value=0.034  Score=44.35  Aligned_cols=111  Identities=13%  Similarity=0.040  Sum_probs=67.0

Q ss_pred             CCCcEEEeCCCcChHHHHHHh------------hC------CeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCc
Q 029065           42 KGKRVIELGAGCGVAGFGMAL------------LG------CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGS  102 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~------------~g------~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~  102 (199)
                      +..+|.|+||.+|..++.+..            .+      -+|...|++. =....-+++....          +....
T Consensus        51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~----------~~~~~  120 (359)
T d1m6ex_          51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN----------DVDGV  120 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC----------SCTTC
T ss_pred             CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc----------cCCCC
Confidence            346899999999977743331            11      1488889732 2222222221110          11112


Q ss_pred             EEEEEeeeCCCccccccCCCccEEEEeccccCCc---------------------------------ChHHHHHHHHHhc
Q 029065          103 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------------------------------LLEPLLQTIFALS  149 (199)
Q Consensus       103 i~~~~~d~~~~~~~~~~~~~fD~Ii~~~~~~~~~---------------------------------~~~~~l~~l~~~l  149 (199)
                      + +...--+.+-..-.+.++.++++++-.++|-+                                 ++..+|+...+=|
T Consensus       121 ~-f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL  199 (359)
T d1m6ex_         121 C-FINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEV  199 (359)
T ss_dssp             E-EEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHB
T ss_pred             e-EEEecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2 23333344444445677899999888887622                                 3566888888889


Q ss_pred             CCCcEEEEEEEecC
Q 029065          150 GPKTTILLGYEIRS  163 (199)
Q Consensus       150 ~~~g~i~i~~~~~~  163 (199)
                      .|||.+++....|.
T Consensus       200 v~GG~mvl~~~gr~  213 (359)
T d1m6ex_         200 VPGGRMVLTILGRR  213 (359)
T ss_dssp             CTTCEEEEEEEECS
T ss_pred             cCCcEEEEEEeccC
Confidence            99999999887764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.99  E-value=0.013  Score=41.12  Aligned_cols=91  Identities=18%  Similarity=0.208  Sum_probs=54.3

Q ss_pred             CCCcEEEeCCCc-ChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc--
Q 029065           42 KGKRVIELGAGC-GVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI--  116 (199)
Q Consensus        42 ~~~~VLdlGcG~-G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~--  116 (199)
                      +|.+||=+|||. |+..+.+++. |++|+++|.++ -++.+++    .+..              .+  .+..+.+..  
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~----~Ga~--------------~~--i~~~~~~~~~~   86 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK----LGAS--------------LT--VNARQEDPVEA   86 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS--------------EE--EETTTSCHHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc----cCcc--------------cc--ccccchhHHHH
Confidence            577899999986 8877777754 88999999844 5555543    2311              11  222222111  


Q ss_pred             --cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 --KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 --~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                        ....+.+++|+..       .-...+....+.|+++|.+.+..
T Consensus        87 ~~~~~~g~~~~i~~~-------~~~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          87 IQRDIGGAHGVLVTA-------VSNSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             HHHHHSSEEEEEECC-------SCHHHHHHHHTTEEEEEEEEECC
T ss_pred             HHHhhcCCccccccc-------ccchHHHHHHHHhcCCcEEEEEE
Confidence              1112334444432       22456778889999999977653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=94.87  E-value=0.048  Score=41.17  Aligned_cols=82  Identities=16%  Similarity=0.104  Sum_probs=56.5

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +++||+||=.|+..|+   ++..+++.|++|+++|.+ +-++.+.+.+...+             ..+.+..+|..+.+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~-------------~~~~~~~~D~s~~~~   69 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG-------------LNVEGSVCDLLSRTE   69 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CCceEEEeecCCHHH
Confidence            4689999999998774   566777789999999984 46666655554443             356777888876642


Q ss_pred             c--------cccCCCccEEEEeccccC
Q 029065          116 I--------KAVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       116 ~--------~~~~~~fD~Ii~~~~~~~  134 (199)
                      .        ....+..|+++.+..+..
T Consensus        70 ~~~~~~~~~~~~~g~idilinnag~~~   96 (258)
T d1ae1a_          70 RDKLMQTVAHVFDGKLNILVNNAGVVI   96 (258)
T ss_dssp             HHHHHHHHHHHTTSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHhCCCcEEEeccccccc
Confidence            2        122357889887655543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.067  Score=40.07  Aligned_cols=83  Identities=18%  Similarity=0.204  Sum_probs=59.7

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..++|+.+|=-|++.|+   ++..++..|++|+.+|.+ +-++.+...+...             ..++....+|..+.+
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~-------------~~~~~~~~~Dvs~~~   69 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL-------------GAKVHTFVVDCSNRE   69 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEeeCCCHH
Confidence            35789999999999885   677777889999999984 4666666665444             236788888887765


Q ss_pred             ccc-------ccCCCccEEEEeccccC
Q 029065          115 HIK-------AVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~~~  134 (199)
                      ...       ...+..|+++.+..+..
T Consensus        70 ~v~~~~~~i~~~~g~idilinnag~~~   96 (244)
T d1yb1a_          70 DIYSSAKKVKAEIGDVSILVNNAGVVY   96 (244)
T ss_dssp             HHHHHHHHHHHHTCCCSEEEECCCCCC
T ss_pred             HHHHHHHHHHHHcCCCceeEeeccccc
Confidence            321       22467999988766543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.79  E-value=0.071  Score=40.64  Aligned_cols=82  Identities=20%  Similarity=0.279  Sum_probs=54.9

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..++||++|=-|+..|+   ++..++..|++|+++|.+ +.++.+.+.+....            ...+.+..+|..+.+
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~------------g~~~~~~~~D~~~~~   88 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT------------GNKVHAIQCDVRDPD   88 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTTCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc------------CCceEEEEecccChH
Confidence            57899999999998773   566666789999999984 45555444443221            235677778876554


Q ss_pred             cc-------cccCCCccEEEEeccc
Q 029065          115 HI-------KAVAPPFDYIIGTDVV  132 (199)
Q Consensus       115 ~~-------~~~~~~fD~Ii~~~~~  132 (199)
                      ..       ....++.|+++.+.-.
T Consensus        89 ~v~~~~~~~~~~~g~iDilvnnAg~  113 (294)
T d1w6ua_          89 MVQNTVSELIKVAGHPNIVINNAAG  113 (294)
T ss_dssp             HHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred             HHHHHhhhhhhhccccchhhhhhhh
Confidence            22       1224689999877554

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.50  E-value=0.054  Score=40.70  Aligned_cols=82  Identities=18%  Similarity=0.255  Sum_probs=54.5

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..+++.|++|+++|.+ +.++.+.+.+....            ..++....+|..+.+.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~------------g~~~~~~~~Dv~~~~~   69 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY------------GVETMAFRCDVSNYEE   69 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh------------CCcEEEEEccCCCHHH
Confidence            4689999999998874   667777889999999983 44444444433221            2356777888876542


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|++|.+.-+.
T Consensus        70 v~~~~~~~~~~~g~iDiLVnnAG~~   94 (251)
T d1vl8a_          70 VKKLLEAVKEKFGKLDTVVNAAGIN   94 (251)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            21       1125799999875543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.048  Score=41.31  Aligned_cols=87  Identities=22%  Similarity=0.290  Sum_probs=56.0

Q ss_pred             cCCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeC
Q 029065           36 FCPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  111 (199)
Q Consensus        36 ~~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~  111 (199)
                      |.|..++||++|=-|++.|+   ++..+++.|++|++++.+ +.++.+...+....            .........|..
T Consensus         7 f~~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~------------~~~~~~~~~d~~   74 (269)
T d1xu9a_           7 FRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG------------AASAHYIAGTME   74 (269)
T ss_dssp             CCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT------------CSEEEEEECCTT
T ss_pred             CCccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh------------cccchhhhhhhh
Confidence            45677899999999998884   666777789999999984 46666655443332            224555555554


Q ss_pred             CCccc-------cccCCCccEEEEeccccC
Q 029065          112 NEDHI-------KAVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       112 ~~~~~-------~~~~~~fD~Ii~~~~~~~  134 (199)
                      .....       ....+..|+++.+...+.
T Consensus        75 ~~~~~~~~~~~~~~~~g~~~~li~nag~~~  104 (269)
T d1xu9a_          75 DMTFAEQFVAQAGKLMGGLDMLILNHITNT  104 (269)
T ss_dssp             CHHHHHHHHHHHHHHHTSCSEEEECCCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCcccccccccccc
Confidence            33211       111357888887755543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.32  E-value=0.036  Score=42.25  Aligned_cols=81  Identities=23%  Similarity=0.202  Sum_probs=57.3

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++||++|=-|++.|+   ++..++..|++|+++|.+ +.++.+.+.+...+..          ..++....+|+.+....
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~----------~~~~~~~~~Dv~~~~~v   71 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVP----------AEKINAVVADVTEASGQ   71 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC----------GGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCC----------CcceEEEEeeCCCHHHH
Confidence            679999999998874   566777789999999984 4677777766655421          34678888888766422


Q ss_pred             c-------ccCCCccEEEEecc
Q 029065          117 K-------AVAPPFDYIIGTDV  131 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~  131 (199)
                      .       ..-++.|+++.+.-
T Consensus        72 ~~~~~~~~~~~G~iDilVnnAG   93 (274)
T d1xhla_          72 DDIINTTLAKFGKIDILVNNAG   93 (274)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHcCCceEEEeecc
Confidence            1       11257899998743

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.30  E-value=0.085  Score=40.64  Aligned_cols=88  Identities=17%  Similarity=0.259  Sum_probs=58.7

Q ss_pred             CCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           38 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      |..++||++|=-|++.|+   ++..+++.|++|+++|.+ +-++.+.+.+..+...        ....++....+|..+.
T Consensus         7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~--------~~~~~~~~~~~Dvs~~   78 (297)
T d1yxma1           7 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP--------TKQARVIPIQCNIRNE   78 (297)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT--------TCCCCEEEEECCTTCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc--------ccCceEEEEeccCCCH
Confidence            577899999999998874   556667789999999984 4666555555433110        1134677888888766


Q ss_pred             cccc-------ccCCCccEEEEecccc
Q 029065          114 DHIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      +...       ..-++.|++|.+....
T Consensus        79 ~~v~~~~~~~~~~~G~iDiLVnnAg~~  105 (297)
T d1yxma1          79 EEVNNLVKSTLDTFGKINFLVNNGGGQ  105 (297)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHhCCeEEEEeecccc
Confidence            4321       1135799999876543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.26  E-value=0.053  Score=40.83  Aligned_cols=81  Identities=21%  Similarity=0.156  Sum_probs=54.2

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHH-HHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNV-EWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      .++||++|=-|++.|+   ++..++..|++|+.+|.+ +-+..+.+.+ ...+             .++....+|..+.+
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g-------------~~~~~~~~Dv~~~~   72 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-------------VKTKAYQCDVSNTD   72 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT-------------CCEEEEECCTTCHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC-------------CceEEEEccCCCHH
Confidence            4789999999998774   666777789999999973 3343333333 3332             35677888887664


Q ss_pred             cc-------cccCCCccEEEEecccc
Q 029065          115 HI-------KAVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~-------~~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ...-++.|++|.+..+.
T Consensus        73 ~v~~~~~~~~~~~g~iDilVnnAg~~   98 (260)
T d1h5qa_          73 IVTKTIQQIDADLGPISGLIANAGVS   98 (260)
T ss_dssp             HHHHHHHHHHHHSCSEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCcEeccccccc
Confidence            22       11236899998876553

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.23  E-value=0.12  Score=38.90  Aligned_cols=81  Identities=15%  Similarity=0.133  Sum_probs=55.5

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..+++.|++|+++|.+ +.++.+...+...+             .++.+..+|..+.+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~~~~~   71 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-------------FKVEASVCDLSSRSE   71 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CEEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CCceEEEeeCCCHHH
Confidence            4689999999998874   566777789999999984 46666655554443             356777788866542


Q ss_pred             c--------cccCCCccEEEEecccc
Q 029065          116 I--------KAVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~--------~~~~~~fD~Ii~~~~~~  133 (199)
                      .        ....++.|+++.+.-+.
T Consensus        72 v~~~~~~~~~~~~~~idilvnnAG~~   97 (259)
T d2ae2a_          72 RQELMNTVANHFHGKLNILVNNAGIV   97 (259)
T ss_dssp             HHHHHHHHHHHTTTCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCceEEEECCcee
Confidence            1        11134799998875543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.07  E-value=0.05  Score=41.08  Aligned_cols=79  Identities=19%  Similarity=0.212  Sum_probs=55.7

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..++..|++|+.+|.+ +.++.+.+.+...+             .++....+|+.+.+.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~~~~~   68 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG-------------VEARSYVCDVTSEEA   68 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-------------SCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHH
Confidence            3689999999998874   667777889999999984 47776666665443             357778888876542


Q ss_pred             cc-------ccCCCccEEEEecc
Q 029065          116 IK-------AVAPPFDYIIGTDV  131 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~  131 (199)
                      ..       ..-++.|++|.+.-
T Consensus        69 v~~~~~~~~~~~g~iDilVnnaG   91 (260)
T d1zema1          69 VIGTVDSVVRDFGKIDFLFNNAG   91 (260)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHhCCCCeehhhhc
Confidence            21       11257999987643

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.07  E-value=0.07  Score=40.20  Aligned_cols=81  Identities=17%  Similarity=0.182  Sum_probs=56.3

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++||++|=-|++.|+   ++..+++.|++|+.+|. .+.++.+...+...+.           ..++....+|+.+.+..
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~-----------~~~~~~~~~Dvt~~~~v   70 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP-----------DAEVLTTVADVSDEAQV   70 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT-----------TCCEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-----------CCeEEEEeccCCCHHHH
Confidence            679999999998874   67777888999999998 4466666555544321           23677788888766432


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ..-++.|++|.+.-+
T Consensus        71 ~~~~~~~~~~~G~iDiLVnnAG~   93 (258)
T d1iy8a_          71 EAYVTATTERFGRIDGFFNNAGI   93 (258)
T ss_dssp             HHHHHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCcc
Confidence            1       112579999877543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.04  E-value=0.039  Score=41.92  Aligned_cols=83  Identities=20%  Similarity=0.195  Sum_probs=57.7

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..+++.|++|+++|.+ +.++.+.+.+...+..          ..++....+|+.+.+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~----------~~~~~~~~~Dvs~~~~   71 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVS----------EKQVNSVVADVTTEDG   71 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCC----------GGGEEEEECCTTSHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC----------CCceEEEEccCCCHHH
Confidence            3789999999998874   667777889999999984 4777776666554311          2367888888876542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|+++.+.-.
T Consensus        72 v~~~~~~~~~~~g~iDilvnnAG~   95 (272)
T d1xkqa_          72 QDQIINSTLKQFGKIDVLVNNAGA   95 (272)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHhCCceEEEeCCcc
Confidence            21       112579999877443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.97  E-value=0.081  Score=39.64  Aligned_cols=82  Identities=13%  Similarity=0.071  Sum_probs=56.4

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .+++|.+|=-|++.|+   ++..++..|++|+++|.+ +.++.+...+...+             .++....+|..+.+.
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-------------~~~~~~~~Dvt~~~~   73 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-------------YESSGYAGDVSKKEE   73 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-------------CCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHH
Confidence            3579999999998774   556666779999999984 46666666554442             357778888876542


Q ss_pred             cc-------ccCCCccEEEEeccccC
Q 029065          116 IK-------AVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~~  134 (199)
                      ..       ..-++.|++|.+..+..
T Consensus        74 v~~~~~~~~~~~g~iDilvnnag~~~   99 (251)
T d2c07a1          74 ISEVINKILTEHKNVDILVNNAGITR   99 (251)
T ss_dssp             HHHHHHHHHHHCSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHhcCCceeeeecccccc
Confidence            21       22368999998765543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.94  E-value=0.03  Score=38.99  Aligned_cols=94  Identities=21%  Similarity=0.168  Sum_probs=54.9

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHhh-CCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc--
Q 029065           41 LKGKRVIELGAGC-GVAGFGMALL-GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~~-g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~--  115 (199)
                      -+|.+||=.|||+ |+..+.+++. |++|+++|.++ -++.+++    .+..                ...+..+.+.  
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga~----------------~~~~~~~~~~~~   85 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD----------------LVVNPLKEDAAK   85 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS----------------EEECTTTSCHHH
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCcc----------------eecccccchhhh
Confidence            3578899999987 7777777754 78999999744 5555543    3321                1122222211  


Q ss_pred             -ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          116 -IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       116 -~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                       .....+.+|.++...      .-...+....+.++++|.+++...
T Consensus        86 ~~~~~~~~~~~~v~~~------~~~~~~~~a~~~l~~~G~i~~~g~  125 (168)
T d1rjwa2          86 FMKEKVGGVHAAVVTA------VSKPAFQSAYNSIRRGGACVLVGL  125 (168)
T ss_dssp             HHHHHHSSEEEEEESS------CCHHHHHHHHHHEEEEEEEEECCC
T ss_pred             hcccccCCCceEEeec------CCHHHHHHHHHHhccCCceEeccc
Confidence             011112344433321      235678888999999999877643

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.93  E-value=0.051  Score=41.16  Aligned_cols=79  Identities=20%  Similarity=0.239  Sum_probs=53.2

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||.+|=-|++.|+   ++..++..|++|+++|.++ .++.+...+..              ...+.+..+|+.+.+.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~--------------~~~~~~~~~Dv~~~~~   68 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS--------------PDVISFVHCDVTKDED   68 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--------------TTTEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC--------------CCceEEEEccCCCHHH
Confidence            4789999999998874   5566667799999999843 55555444322              2356777888876542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|++|.+.-+
T Consensus        69 v~~~~~~~~~~~g~iD~lVnnAG~   92 (268)
T d2bgka1          69 VRNLVDTTIAKHGKLDIMFGNVGV   92 (268)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCcceecccccc
Confidence            21       112589999876543

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.81  E-value=0.05  Score=41.10  Aligned_cols=82  Identities=16%  Similarity=0.146  Sum_probs=57.1

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||.+|=-|++.|+   ++..+++.|++|+++|.+ +.++.+...+...+..          ..++.+..+|+.+...
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~----------~~~~~~~~~Dvt~~~~   71 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVS----------EQNVNSVVADVTTDAG   71 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC----------GGGEEEEECCTTSHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC----------cCceEEEEccCCCHHH
Confidence            3689999999998774   667777889999999984 4677776666554321          2357888888876642


Q ss_pred             cc-------ccCCCccEEEEecc
Q 029065          116 IK-------AVAPPFDYIIGTDV  131 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~  131 (199)
                      ..       ..-++.|++|.+.-
T Consensus        72 v~~~~~~~~~~~g~iDilvnnAG   94 (264)
T d1spxa_          72 QDEILSTTLGKFGKLDILVNNAG   94 (264)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHhCCCCEeecccc
Confidence            21       11257999987743

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.75  E-value=0.12  Score=38.89  Aligned_cols=81  Identities=16%  Similarity=0.034  Sum_probs=56.0

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..++..|++|+++|.+ +-++.+...+...+             .++....+|..+.+.
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~   71 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG-------------FQVTGSVCDASLRPE   71 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEeccCCCHHH
Confidence            4689999999998875   666777789999999984 46666655554442             367788888865542


Q ss_pred             c--------cccCCCccEEEEecccc
Q 029065          116 I--------KAVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~--------~~~~~~fD~Ii~~~~~~  133 (199)
                      .        ....++.|+++.+.-+.
T Consensus        72 v~~~~~~~~~~~~g~idilvnnAG~~   97 (259)
T d1xq1a_          72 REKLMQTVSSMFGGKLDILINNLGAI   97 (259)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECCC-
T ss_pred             HHHHHHHHHHHhCCCccccccccccc
Confidence            1        11136799998875553

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.74  E-value=0.023  Score=40.07  Aligned_cols=93  Identities=16%  Similarity=0.126  Sum_probs=57.0

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-
Q 029065           41 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-  115 (199)
                      -+|.+||=+|||. |..++.+++ .|+ .|+++|.++ -++.+++.    +.            .  .+  .+..+... 
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga------------~--~~--i~~~~~~~~   90 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA------------D--HV--VDARRDPVK   90 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC------------S--EE--EETTSCHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc------------c--ee--ecCcccHHH
Confidence            4578999999986 777777775 476 488889844 55555532    21            0  11  22221110 


Q ss_pred             --cc-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 --IK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 --~~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                        .. .....+|+|+-.      ..-...++...+.++++|++.+..
T Consensus        91 ~~~~~~~~~g~d~vid~------~g~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2          91 QVMELTRGRGVNVAMDF------VGSQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             HHHHHTTTCCEEEEEES------SCCHHHHHHGGGGEEEEEEEEECC
T ss_pred             HHHHhhCCCCceEEEEe------cCcchHHHHHHHHHhCCCEEEEEe
Confidence              01 113468888754      234456788888999999987754

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.72  E-value=0.12  Score=38.75  Aligned_cols=81  Identities=15%  Similarity=0.188  Sum_probs=55.1

Q ss_pred             CCCCcEEEeCCCcC---hHHHHHHhhCCeEEEeec-h-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCG---VAGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G---~~sl~la~~g~~v~~~D~-~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ++||+||=.|++.|   .++..+++.|++|+.++. + +.++.+...+...+             .++....+|..+.+.
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~D~~~~~~   70 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG-------------AQGVAIQADISKPSE   70 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC-------------CCceEecCCCCCHHH
Confidence            57999998888776   366677778999888754 3 36677766666553             367788888876542


Q ss_pred             c-------cccCCCccEEEEeccccC
Q 029065          116 I-------KAVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       116 ~-------~~~~~~fD~Ii~~~~~~~  134 (199)
                      .       ....+..|++|.+.-+..
T Consensus        71 v~~~~~~~~~~~g~idilinnag~~~   96 (259)
T d1ja9a_          71 VVALFDKAVSHFGGLDFVMSNSGMEV   96 (259)
T ss_dssp             HHHHHHHHHHHHSCEEEEECCCCCCC
T ss_pred             HHHHHHHHHHHcCCCcEEEecccccc
Confidence            2       112357999987765544

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=93.54  E-value=0.09  Score=39.51  Aligned_cols=81  Identities=12%  Similarity=0.183  Sum_probs=55.1

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech--hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI--EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~--~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ++||.+|=-|++.|+   ++..+++.|++|+.+|.+  +.++.+...+....            ..++.+..+|..+.+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~------------g~~~~~~~~Dv~~~~~   69 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH------------GVKVLYDGADLSKGEA   69 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH------------TSCEEEECCCTTSHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc------------CCcEEEEECCCCCHHH
Confidence            578999988998774   666777889999999973  35666655554332            2367788888876642


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|++|.+.-+.
T Consensus        70 v~~~~~~~~~~~G~iDiLVnnAG~~   94 (260)
T d1x1ta1          70 VRGLVDNAVRQMGRIDILVNNAGIQ   94 (260)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCCcEEEeecccc
Confidence            21       1125799998775543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.53  E-value=0.098  Score=39.28  Aligned_cols=82  Identities=21%  Similarity=0.274  Sum_probs=56.3

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..++..|++|+++|.+ +.++.+.+.+...+             .++.+..+|..+.+.
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-------------~~~~~~~~Dvs~~~~   74 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-------------GQAFACRCDITSEQE   74 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------------CcEEEEEccCCCHHH
Confidence            4689999999998774   556677789999999984 46666666555443             356777888876542


Q ss_pred             cc-------ccCCCccEEEEeccccC
Q 029065          116 IK-------AVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~~  134 (199)
                      ..       ..-++.|+++.+.-+..
T Consensus        75 ~~~~~~~~~~~~g~iDilvnnAG~~~  100 (255)
T d1fmca_          75 LSALADFAISKLGKVDILVNNAGGGG  100 (255)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEeeeCCcCCC
Confidence            21       11257999988755533

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.34  E-value=0.047  Score=41.02  Aligned_cols=80  Identities=21%  Similarity=0.230  Sum_probs=55.2

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..+++.|++|+++|.+ +.++.+.+.+..              ..++.+..+|..+.+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~~~~~   68 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--------------PDQIQFFQHDSSDEDG   68 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--------------TTTEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC--------------CCcEEEEEccCCCHHH
Confidence            3789999999998774   566777789999999984 466655554421              2367788888876642


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|++|.+..+.
T Consensus        69 v~~~~~~~~~~~G~iDiLVnnAg~~   93 (251)
T d1zk4a1          69 WTKLFDATEKAFGPVSTLVNNAGIA   93 (251)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred             HHHHHHHHHHHhCCceEEEeccccc
Confidence            21       1125799998776553

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.94  E-value=0.052  Score=38.50  Aligned_cols=93  Identities=22%  Similarity=0.160  Sum_probs=57.4

Q ss_pred             CCCCcEEEeCCCc-ChHHHHHHhh-CC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-
Q 029065           41 LKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~-G~~sl~la~~-g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-  115 (199)
                      -+|.+||=+|||. |...+.+|+. |+ +|+++|.++ -++.+++.    +..              .+  ++..+... 
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~--------------~v--i~~~~~~~~   86 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GAD--------------LT--LNRRETSVE   86 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TCS--------------EE--EETTTSCHH
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cce--------------EE--EeccccchH
Confidence            3688999999985 8777777754 87 699999844 66666442    211              11  12222110 


Q ss_pred             ------cc-ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 ------IK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 ------~~-~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                            .. .....+|+|+-.-      .-...++...+.++++|.+.+..
T Consensus        87 ~~~~~i~~~~~~~g~Dvvid~v------G~~~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          87 ERRKAIMDITHGRGADFILEAT------GDSRALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             HHHHHHHHHTTTSCEEEEEECS------SCTTHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHHhhCCCCceEEeecC------CchhHHHHHHHHhcCCCEEEEEe
Confidence                  00 1134699987431      22356777789999999876653

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=92.78  E-value=0.15  Score=37.95  Aligned_cols=78  Identities=19%  Similarity=0.210  Sum_probs=51.8

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..++..|++|+++|.++ .++.+.+.+..                +.....+|..+.+.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~----------------~~~~~~~Dv~~~~~   64 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA----------------NGKGLMLNVTDPAS   64 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG----------------GEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC----------------CCcEEEEEecCHHH
Confidence            3689999999998874   5666677899999999843 55554443321                34666778766542


Q ss_pred             c-------cccCCCccEEEEecccc
Q 029065          116 I-------KAVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~-------~~~~~~fD~Ii~~~~~~  133 (199)
                      .       ...-++.|++|.+....
T Consensus        65 v~~~~~~~~~~~g~iDilVnnAg~~   89 (243)
T d1q7ba_          65 IESVLEKIRAEFGEVDILVNNAGIT   89 (243)
T ss_dssp             HHHHHHHHHHHTCSCSEEEECCCCC
T ss_pred             hhhhhhhhhcccCCcceehhhhhhc
Confidence            2       11236899998775443

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=92.76  E-value=0.37  Score=35.52  Aligned_cols=77  Identities=21%  Similarity=0.160  Sum_probs=51.4

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=.|++.|+   ++..++..|++|++++.+. .++...+   ..             ..++.+..+|..+.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~-------------~~~~~~~~~Dls~~~~   65 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVA---AL-------------EAEAIAVVADVSDPKA   65 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TC-------------CSSEEEEECCTTSHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---Hc-------------CCceEEEEecCCCHHH
Confidence            5789999999998874   5666677899999999744 3332222   11             2356777888876543


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|+++.+...
T Consensus        66 i~~~~~~i~~~~g~iDiLinnAg~   89 (241)
T d2a4ka1          66 VEAVFAEALEEFGRLHGVAHFAGV   89 (241)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEGGGG
T ss_pred             HHHHHHHHHHHhCCccEecccccc
Confidence            21       112579999887554

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.67  E-value=0.18  Score=37.39  Aligned_cols=76  Identities=22%  Similarity=0.361  Sum_probs=49.7

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      +++||++|=-|++.|+   ++..++..|++|+++|.+ +.++.+.+.                 ...+....+|..+.+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-----------------~~~~~~~~~Dv~~~~~   64 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE-----------------CPGIEPVCVDLGDWDA   64 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----------------STTCEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------------cCCCeEEEEeCCCHHH
Confidence            3789999999998774   566677789999999974 333333221                 1245667778765542


Q ss_pred             cc---ccCCCccEEEEeccc
Q 029065          116 IK---AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~---~~~~~fD~Ii~~~~~  132 (199)
                      ..   ..-++.|++|.+.-+
T Consensus        65 v~~~~~~~g~iDilVnnAg~   84 (242)
T d1cyda_          65 TEKALGGIGPVDLLVNNAAL   84 (242)
T ss_dssp             HHHHHTTCCCCSEEEECCCC
T ss_pred             HHHHHHHcCCCeEEEECCcc
Confidence            21   112679999877544

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.52  E-value=0.25  Score=36.64  Aligned_cols=77  Identities=26%  Similarity=0.404  Sum_probs=50.7

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..++..|++|+++|.++ -++.+...                 ...+....+|..+.+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~-----------------~~~~~~~~~Dv~d~~~   66 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE-----------------CPGIEPVCVDLGDWEA   66 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----------------STTCEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh-----------------cCCCeEEEEeCCCHHH
Confidence            3689999999998874   5666777899999999843 44433221                 1235666777765532


Q ss_pred             cc---ccCCCccEEEEecccc
Q 029065          116 IK---AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~---~~~~~fD~Ii~~~~~~  133 (199)
                      ..   ..-++.|++|.+..+.
T Consensus        67 v~~~~~~~g~iDilVnnAg~~   87 (244)
T d1pr9a_          67 TERALGSVGPVDLLVNNAAVA   87 (244)
T ss_dssp             HHHHHTTCCCCCEEEECCCCC
T ss_pred             HHHHHHHhCCceEEEeccccc
Confidence            21   1236899998776553

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.48  E-value=0.15  Score=38.32  Aligned_cols=81  Identities=20%  Similarity=0.184  Sum_probs=55.5

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec-hh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      +++||++|=-|++.|+   ++..+++.|++|+++|. .+ .++.+.+.+...+             .++....+|..+.+
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g-------------~~~~~~~~Dvt~~~   70 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG-------------GEAIAVKGDVTVES   70 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CEEEEEECCTTSHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHH
Confidence            4789999999998874   56667778999999986 33 5666655554443             25677788887664


Q ss_pred             ccc-------ccCCCccEEEEecccc
Q 029065          115 HIK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ...       ..-++.|++|.+.-+.
T Consensus        71 ~v~~~~~~~~~~~G~iDiLVnnAG~~   96 (261)
T d1geea_          71 DVINLVQSAIKEFGKLDVMINNAGLE   96 (261)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCCEeeccceec
Confidence            221       1125799998876553

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.35  E-value=0.024  Score=40.07  Aligned_cols=91  Identities=15%  Similarity=0.145  Sum_probs=53.6

Q ss_pred             CCCCCcEEEeCC-Cc-ChHHHHHHhh-CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGA-GC-GVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGc-G~-G~~sl~la~~-g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .-+|.+||=.|+ |. |...+.+|+. |++|++++. ++-++.+++    .+.            +.+    .|..+...
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa------------~~~----i~~~~~~~   84 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGA------------EEA----ATYAEVPE   84 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTC------------SEE----EEGGGHHH
T ss_pred             CCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----ccc------------cee----eehhhhhh
Confidence            346789999885 43 7777777865 899999986 334444433    231            111    23322111


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      .......+|+|+-.  .-  .    .+....+.++++|.+++.
T Consensus        85 ~~~~~~g~D~v~d~--~G--~----~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          85 RAKAWGGLDLVLEV--RG--K----EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             HHHHTTSEEEEEEC--SC--T----THHHHHTTEEEEEEEEEC
T ss_pred             hhhccccccccccc--cc--h----hHHHHHHHHhcCCcEEEE
Confidence            11224579998753  11  1    245667889999987654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.31  E-value=0.023  Score=40.19  Aligned_cols=92  Identities=11%  Similarity=0.044  Sum_probs=55.7

Q ss_pred             CCCCcEEEeCCCc--ChHHHHHHh-hCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGC--GVAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~--G~~sl~la~-~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      -+|.+||=.|+|.  |...+.+|+ .|++|++++.++ -++.+++    .+..              +  .+|..+.+..
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~----lGa~--------------~--vi~~~~~d~~   86 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGAW--------------Q--VINYREEDLV   86 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTCS--------------E--EEETTTSCHH
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh----cCCe--------------E--EEECCCCCHH
Confidence            3578999997765  667777775 499999999854 5555543    2311              1  1233332211


Q ss_pred             c-----ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          117 K-----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       117 ~-----~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .     .....+|+|+-.-.       .+.+......++++|.+++..
T Consensus        87 ~~v~~~t~g~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          87 ERLKEITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             HHHHHHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHhCCCCeEEEEeCcc-------HHHHHHHHHHHhcCCeeeecc
Confidence            1     12457898776421       235677788899999866543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.13  E-value=0.068  Score=38.08  Aligned_cols=98  Identities=12%  Similarity=-0.020  Sum_probs=56.8

Q ss_pred             CCCCcEEEeCCCc--ChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGC--GVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~--G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .+|.+||=-|++.  |..++.+|+ .|++|+++--+ +-++.+++    .+.            +.+....-++... ..
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~----lGa------------~~vi~~~~~~~~~-~~   92 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGA------------KEVLAREDVMAER-IR   92 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTC------------SEEEECC---------
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh----ccc------------ceeeecchhHHHH-HH
Confidence            3578899999754  567788785 59999999863 45555543    231            1111111111111 11


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEec
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  162 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~~  162 (199)
                      ....+.+|+|+-+-       -...+....+.|+++|.++......
T Consensus        93 ~~~~~gvD~vid~v-------gg~~~~~~l~~l~~~Griv~~G~~~  131 (176)
T d1xa0a2          93 PLDKQRWAAAVDPV-------GGRTLATVLSRMRYGGAVAVSGLTG  131 (176)
T ss_dssp             -CCSCCEEEEEECS-------TTTTHHHHHHTEEEEEEEEECSCCS
T ss_pred             HhhccCcCEEEEcC-------CchhHHHHHHHhCCCceEEEeeccc
Confidence            11245799887641       2345788888999999987766543

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=92.05  E-value=0.16  Score=35.30  Aligned_cols=100  Identities=18%  Similarity=0.050  Sum_probs=55.8

Q ss_pred             CcEEEeCCCc-C-hHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccC
Q 029065           44 KRVIELGAGC-G-VAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  120 (199)
Q Consensus        44 ~~VLdlGcG~-G-~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  120 (199)
                      ++|-=||+|. | .++..|++.|.+|++.|.. +-++.++..-. +..    ..+    ............  ......-
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~----~~~----~~~~~~~~~~~~--~~~~e~~   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGA-IIA----EGP----GLAGTAHPDLLT--SDIGLAV   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTS-EEE----ESS----SCCEEECCSEEE--SCHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC-Cch----hhh----hhhhhhhhhhhh--hhhHhHh
Confidence            5677789986 4 4677777889999999984 44444332210 000    000    001111110000  0011112


Q ss_pred             CCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEE
Q 029065          121 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       121 ~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      ...|+|+..-+   ......+++.+..+++++..+++
T Consensus        71 ~~aD~iii~v~---~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          71 KDADVILIVVP---AIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             TTCSEEEECSC---GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             cCCCEEEEEEc---hhHHHHHHHHhhhccCCCCEEEE
Confidence            57899987632   34678899999999999886554

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=91.73  E-value=0.32  Score=36.28  Aligned_cols=90  Identities=17%  Similarity=0.059  Sum_probs=54.4

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEee-chhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTD-QIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D-~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||+||=-|++.|+   ++..+++.|++|+.++ ..+-.+.+.+......            ...+.+...|......
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~d~~~~~~   69 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINP------------KVNITFHTYDVTVPVA   69 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCT------------TSEEEEEECCTTSCHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCC------------CCCEEEEEeecCCCHH
Confidence            4789999999998875   5666677899977774 3332222222222221            2356777777753321


Q ss_pred             -c-------cccCCCccEEEEeccccCCcChHHH
Q 029065          116 -I-------KAVAPPFDYIIGTDVVYAEHLLEPL  141 (199)
Q Consensus       116 -~-------~~~~~~fD~Ii~~~~~~~~~~~~~~  141 (199)
                       .       ...-++.|++|.+.-....+.++..
T Consensus        70 ~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~  103 (254)
T d1sbya1          70 ESKKLLKKIFDQLKTVDILINGAGILDDHQIERT  103 (254)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEeCCCCCCHHHHHHH
Confidence             1       1112589999998877766654443

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=91.67  E-value=0.08  Score=37.30  Aligned_cols=97  Identities=12%  Similarity=0.063  Sum_probs=57.0

Q ss_pred             CCCCcEEEeCCC--cChHHHHHHhh-CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAG--CGVAGFGMALL-GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG--~G~~sl~la~~-g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++.+||=-|++  .|..++.+|+. |++|+++.-+ +-.+.+++    .+.            +.+ +..-++......
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~----lGa------------d~v-i~~~~~~~~~~~   84 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGA------------SEV-ISREDVYDGTLK   84 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTC------------SEE-EEHHHHCSSCCC
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHh----hcc------------cce-Eeccchhchhhh
Confidence            346678877753  46788888864 9999999874 34444433    221            111 111121111111


Q ss_pred             cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          117 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       117 ~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      ....+.+|+|+-+       .-.+.+....+.|+++|.+.+....
T Consensus        85 ~~~~~gvd~vid~-------vgg~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          85 ALSKQQWQGAVDP-------VGGKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             SSCCCCEEEEEES-------CCTHHHHHHHTTEEEEEEEEECCCS
T ss_pred             cccCCCceEEEec-------CcHHHHHHHHHHhccCceEEEeecc
Confidence            2224579987754       2345778888999999997766543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.46  E-value=0.02  Score=40.27  Aligned_cols=93  Identities=17%  Similarity=0.154  Sum_probs=54.9

Q ss_pred             CCCCcEEEeCC-C-cChHHHHHHh-hCC-eEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           41 LKGKRVIELGA-G-CGVAGFGMAL-LGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        41 ~~~~~VLdlGc-G-~G~~sl~la~-~g~-~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      -++.+||=+|| | .|...+.+++ .|. +|+++|.++ -++.+++    .+..              ..  .+....+.
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga~--------------~~--i~~~~~~~   85 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGAD--------------YV--INASMQDP   85 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTCS--------------EE--EETTTSCH
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCCc--------------ee--eccCCcCH
Confidence            45789999997 4 3666665554 464 699999744 5555543    2311              11  12222111


Q ss_pred             c-----cccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 I-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 ~-----~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                      .     ....+.||+|+-.      ..-...++...+.++|+|.+++..
T Consensus        86 ~~~~~~~~~~~~~d~vid~------~g~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          86 LAEIRRITESKGVDAVIDL------NNSEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             HHHHHHHTTTSCEEEEEES------CCCHHHHTTGGGGEEEEEEEEECC
T ss_pred             HHHHHHHhhcccchhhhcc------cccchHHHhhhhhcccCCEEEEec
Confidence            0     1113569988764      234566777788999999987664

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.30  E-value=0.44  Score=36.47  Aligned_cols=36  Identities=31%  Similarity=0.529  Sum_probs=30.4

Q ss_pred             CCCCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeec
Q 029065           37 CPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ   72 (199)
Q Consensus        37 ~~~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~   72 (199)
                      +|..++||++|=-|++.|+   ++..+++.|++|+.+|.
T Consensus         1 sPm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~   39 (302)
T d1gz6a_           1 SPLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDL   39 (302)
T ss_dssp             CCCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            4777899999999999884   66777788999999975

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=91.22  E-value=0.33  Score=36.10  Aligned_cols=77  Identities=14%  Similarity=0.095  Sum_probs=52.9

Q ss_pred             CCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-
Q 029065           43 GKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-  117 (199)
Q Consensus        43 ~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-  117 (199)
                      ||.+|=-|++.|+   ++..+++.|++|+++|.+ +.++.+.+.+...+             .++.+..+|..+.+... 
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g-------------~~~~~~~~Dvs~~~~v~~   68 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG-------------VEADGRTCDVRSVPEIEA   68 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeecCCHHHHHH
Confidence            6777888887764   666777789999999984 46666666665443             35778888887664221 


Q ss_pred             ------ccCCCccEEEEeccc
Q 029065          118 ------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       118 ------~~~~~fD~Ii~~~~~  132 (199)
                            ..-++.|++|.+.-+
T Consensus        69 ~~~~~~~~~g~iDilVnnAG~   89 (257)
T d2rhca1          69 LVAAVVERYGPVDVLVNNAGR   89 (257)
T ss_dssp             HHHHHHHHTCSCSEEEECCCC
T ss_pred             HHHHHHHHhCCCCEEEecccc
Confidence                  123679999877544

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.19  E-value=0.14  Score=38.21  Aligned_cols=80  Identities=18%  Similarity=0.216  Sum_probs=53.2

Q ss_pred             CCCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..++||++|=-|++.|+   ++..+++.|++|+++|.+ +.++.+.+.+.                .+..+..+|..+.+
T Consensus         2 G~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~Dv~~~~   65 (244)
T d1nffa_           2 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA----------------DAARYVHLDVTQPA   65 (244)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG----------------GGEEEEECCTTCHH
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh----------------CcceEEEeecCCHH
Confidence            35789999999998874   566777789999999984 35444433321                14567778887654


Q ss_pred             ccc-------ccCCCccEEEEeccccC
Q 029065          115 HIK-------AVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       115 ~~~-------~~~~~fD~Ii~~~~~~~  134 (199)
                      ...       ..-++.|+++.+.-+..
T Consensus        66 ~v~~~~~~~~~~~g~idilinnAG~~~   92 (244)
T d1nffa_          66 QWKAAVDTAVTAFGGLHVLVNNAGILN   92 (244)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHHhCCCeEEEECCcccC
Confidence            221       11257899987755543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.78  E-value=0.27  Score=36.65  Aligned_cols=76  Identities=22%  Similarity=0.243  Sum_probs=50.9

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..+++.|++|+++|.++ .++.+.+.                 .....+..+|..+.+.
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-----------------~~~~~~~~~Dvs~~~~   65 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQE-----------------LPGAVFILCDVTQEDD   65 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----------------CTTEEEEECCTTSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------------cCCCeEEEccCCCHHH
Confidence            4789999999998874   5666777899999999843 54443322                 1245677788766542


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|++|.+.-+
T Consensus        66 v~~~~~~~~~~~g~iDilVnnAG~   89 (250)
T d1ydea1          66 VKTLVSETIRRFGRLDCVVNNAGH   89 (250)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHhcCCCCEEEecccc
Confidence            21       112579999877543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.70  E-value=0.45  Score=35.58  Aligned_cols=79  Identities=15%  Similarity=0.117  Sum_probs=50.1

Q ss_pred             CCCcE-EEeCCCcCh---HHHHHHhh-CCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           42 KGKRV-IELGAGCGV---AGFGMALL-GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        42 ~~~~V-LdlGcG~G~---~sl~la~~-g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .|++| |==|++.|+   ++..+++. |++|+.++.+ +-++.+.+.+...+             .++.+..+|..+.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dvs~~~s   67 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-------------LSPRFHQLDIDDLQS   67 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-------------CCCEEEECCTTCHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEEecCCHHH
Confidence            36777 444665554   44555665 7889999974 46666666665443             256778888876642


Q ss_pred             cc-------ccCCCccEEEEecccc
Q 029065          116 IK-------AVAPPFDYIIGTDVVY  133 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~  133 (199)
                      ..       ..-++.|++|.|.-+.
T Consensus        68 v~~~~~~~~~~~g~iDiLVnNAGi~   92 (275)
T d1wmaa1          68 IRALRDFLRKEYGGLDVLVNNAGIA   92 (275)
T ss_dssp             HHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred             HHHHHHHHHHhcCCcEEEEEcCCcC
Confidence            21       1125899999886554

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.61  E-value=0.26  Score=36.77  Aligned_cols=78  Identities=18%  Similarity=0.238  Sum_probs=52.7

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++||++|=-|++.|+   ++..++..|++|+++|.+ +.++.+.+.+   +             .++....+|..+.+..
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~-------------~~~~~~~~Dvt~~~~v   66 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---G-------------PAACAIALDVTDQASI   66 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C-------------TTEEEEECCTTCHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C-------------CceEEEEeeCCCHHHH
Confidence            679999999998874   566777789999999984 4444443332   1             2567778888766422


Q ss_pred             c-------ccCCCccEEEEeccccC
Q 029065          117 K-------AVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~~~  134 (199)
                      .       ..-++.|++|.+.-+..
T Consensus        67 ~~~~~~~~~~~g~iDilVnnAg~~~   91 (256)
T d1k2wa_          67 DRCVAELLDRWGSIDILVNNAALFD   91 (256)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHhCCccEEEeeccccc
Confidence            1       11258999988766543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=90.55  E-value=0.28  Score=36.38  Aligned_cols=81  Identities=16%  Similarity=0.260  Sum_probs=52.9

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      .++||.+|=-|++.|+   ++..++..|++|+.+|.++. +.+...+...             ..++....+|..+.+..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~-~~~~~~~~~~-------------g~~~~~~~~Dvs~~~~v   67 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA-PEAEAAIRNL-------------GRRVLTVKCDVSQPGDV   67 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC-HHHHHHHHHT-------------TCCEEEEECCTTCHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch-HHHHHHHHHc-------------CCcEEEEEeeCCCHHHH
Confidence            4789999999998774   66677778999999997431 1222223322             23677888888766422


Q ss_pred             c-------ccCCCccEEEEeccccC
Q 029065          117 K-------AVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~~~  134 (199)
                      .       ..-++.|++|.+.-+..
T Consensus        68 ~~~~~~~~~~~G~iDilVnnAG~~~   92 (247)
T d2ew8a1          68 EAFGKQVISTFGRCDILVNNAGIYP   92 (247)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCC
Confidence            1       11258999988765543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.22  Score=35.67  Aligned_cols=42  Identities=31%  Similarity=0.369  Sum_probs=32.2

Q ss_pred             CcEEEeCCCc-C-hHHHHHHhhCCeEEEeec-hhHHHHHHHHHHH
Q 029065           44 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW   85 (199)
Q Consensus        44 ~~VLdlGcG~-G-~~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~   85 (199)
                      ++|-=||+|+ | -++..++..|.+|+..|. ++.++.+++.+..
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~   49 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEE   49 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHH
Confidence            4677899987 5 367777788999999998 4488877776654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=90.48  E-value=0.24  Score=37.10  Aligned_cols=79  Identities=22%  Similarity=0.220  Sum_probs=52.3

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..+++.|++|+++|.+ +.++.+.+.+                ..++.+..+|..+.+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~Dv~~~~~   65 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL----------------GDAARYQHLDVTIEED   65 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----------------GGGEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------------CCceEEEEcccCCHHH
Confidence            4789999999998874   566777789999999984 3333332221                1256778888876542


Q ss_pred             cc-------ccCCCccEEEEeccccC
Q 029065          116 IK-------AVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~~  134 (199)
                      ..       ..-++.|++|.+.-+..
T Consensus        66 v~~~~~~~~~~~g~iDilVnnAg~~~   91 (254)
T d1hdca_          66 WQRVVAYAREEFGSVDGLVNNAGIST   91 (254)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCccEEEecCcccc
Confidence            21       11257999887755533

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.33  E-value=0.033  Score=39.39  Aligned_cols=90  Identities=20%  Similarity=0.190  Sum_probs=53.2

Q ss_pred             CCCcEEEeCC-C-cChHHHHHHhh-CCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc
Q 029065           42 KGKRVIELGA-G-CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  117 (199)
Q Consensus        42 ~~~~VLdlGc-G-~G~~sl~la~~-g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~  117 (199)
                      +|.+||=.|+ | .|..++.+|+. |++|++++. ++-++.+++    .+.            +.  +  .+..+.+...
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga------------~~--v--i~~~~~~~~~   84 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV------------EY--V--GDSRSVDFAD   84 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC------------SE--E--EETTCSTHHH
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----ccc------------cc--c--ccCCccCHHH
Confidence            5778998874 3 37777777754 899888875 334444432    231            11  1  2222221111


Q ss_pred             -----ccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          118 -----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       118 -----~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                           .....||+|+..-.       .+.++.+.+.|+++|+++..
T Consensus        85 ~v~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          85 EILELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             HHHHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHhCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence                 12357999986421       34667778899999987664

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=90.04  E-value=0.69  Score=33.90  Aligned_cols=47  Identities=19%  Similarity=0.176  Sum_probs=35.0

Q ss_pred             CCCCCcEEEeCCCc--Ch---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHh
Q 029065           40 KLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWN   86 (199)
Q Consensus        40 ~~~~~~VLdlGcG~--G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~   86 (199)
                      .++||+||=-|+++  |+   ++..+++.|++|++++.++ ..+.+.+.....
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~   54 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL   54 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhc
Confidence            46899999999865  63   6677888899999999854 666666555444

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.87  E-value=0.17  Score=35.62  Aligned_cols=42  Identities=17%  Similarity=0.219  Sum_probs=31.7

Q ss_pred             CCCCCcEEEeCCCc-ChHHHHHHh-hCC-eEEEeechh-HHHHHHH
Q 029065           40 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQIE-VLPLLKR   81 (199)
Q Consensus        40 ~~~~~~VLdlGcG~-G~~sl~la~-~g~-~v~~~D~~~-~l~~a~~   81 (199)
                      .-+|.+||=+|||. |+.++.+++ .|+ +|+++|.++ -++.+++
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            44678999999986 777777775 476 599999844 6676654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.78  E-value=0.65  Score=34.36  Aligned_cols=75  Identities=21%  Similarity=0.280  Sum_probs=50.2

Q ss_pred             cEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc---
Q 029065           45 RVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK---  117 (199)
Q Consensus        45 ~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---  117 (199)
                      .+|=-|++.|+   ++..+++.|++|+++|.+ +.++.+.+.+...+             .++....+|..+.+...   
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g-------------~~~~~~~~Dv~~~~~v~~~~   69 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-------------GHAVAVKVDVSDRDQVFAAV   69 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHHHHHHH
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHHHHHHH
Confidence            34667887764   666777789999999984 46666666555443             35777788887664221   


Q ss_pred             ----ccCCCccEEEEeccc
Q 029065          118 ----AVAPPFDYIIGTDVV  132 (199)
Q Consensus       118 ----~~~~~fD~Ii~~~~~  132 (199)
                          ..-++.|++|.+.-+
T Consensus        70 ~~~~~~~g~iDilVnnAG~   88 (255)
T d1gega_          70 EQARKTLGGFDVIVNNAGV   88 (255)
T ss_dssp             HHHHHHTTCCCEEEECCCC
T ss_pred             HHHHHHhCCccEEEecccc
Confidence                113689999877544

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.70  E-value=0.55  Score=32.21  Aligned_cols=88  Identities=14%  Similarity=0.116  Sum_probs=51.8

Q ss_pred             CcEEEeCCCc-C-hHHHHHHhhCC--eEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccc
Q 029065           44 KRVIELGAGC-G-VAGFGMALLGC--NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  118 (199)
Q Consensus        44 ~~VLdlGcG~-G-~~sl~la~~g~--~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~  118 (199)
                      ++|+=+|||. | .++..+.+.|.  +|++.|.+ +.++.+++.    +.              +....   ....  ..
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~--------------~~~~~---~~~~--~~   58 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI--------------IDEGT---TSIA--KV   58 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS--------------CSEEE---SCGG--GG
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc--------------chhhh---hhhh--hh
Confidence            3577788864 3 34555555564  69999984 466665542    21              11111   1111  11


Q ss_pred             cCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEE
Q 029065          119 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL  157 (199)
Q Consensus       119 ~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i  157 (199)
                      .....|+|+.+-+.   .....++..+..+++++..+.-
T Consensus        59 ~~~~~dlIila~p~---~~~~~vl~~l~~~~~~~~ii~d   94 (171)
T d2g5ca2          59 EDFSPDFVMLSSPV---RTFREIAKKLSYILSEDATVTD   94 (171)
T ss_dssp             GGTCCSEEEECSCH---HHHHHHHHHHHHHSCTTCEEEE
T ss_pred             hccccccccccCCc---hhhhhhhhhhhccccccccccc
Confidence            23468999877553   4577788888999988865443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.41  E-value=0.35  Score=36.01  Aligned_cols=79  Identities=18%  Similarity=0.147  Sum_probs=51.6

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..++..|++|+++|.++ .++.+.+.+  .              .+..+...|..+...
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~--~--------------~~~~~~~~Dv~~~~~   66 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL--G--------------ERSMFVRHDVSSEAD   66 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--C--------------TTEEEECCCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--C--------------CCeEEEEeecCCHHH
Confidence            4789999999988774   5666777899999999843 555444332  1              244566677765532


Q ss_pred             cc-------ccCCCccEEEEeccccC
Q 029065          116 IK-------AVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~~~  134 (199)
                      ..       ..-++.|++|.+.-+..
T Consensus        67 ~~~~~~~~~~~~g~iDilVnnAG~~~   92 (253)
T d1hxha_          67 WTLVMAAVQRRLGTLNVLVNNAGILL   92 (253)
T ss_dssp             HHHHHHHHHHHHCSCCEEEECCCCCC
T ss_pred             HHHHHHHHHHHhCCCCeEEecccccC
Confidence            11       11257899988865543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.40  E-value=0.29  Score=36.24  Aligned_cols=74  Identities=23%  Similarity=0.222  Sum_probs=48.9

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++||++|=-|++.|+   ++..++..|++|+++|.++ .++.+.+.+                  ...+..+|+.+.+..
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~------------------~~~~~~~Dv~~~~~v   64 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV------------------GAHPVVMDVADPASV   64 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT------------------TCEEEECCTTCHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc------------------CCeEEEEecCCHHHH
Confidence            679999999998874   5566667799999999843 444433211                  235667787765422


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ..-++.|++|.+.-+
T Consensus        65 ~~~~~~~~~~~g~iDilVnnAG~   87 (242)
T d1ulsa_          65 ERGFAEALAHLGRLDGVVHYAGI   87 (242)
T ss_dssp             HHHHHHHHHHHSSCCEEEECCCC
T ss_pred             HHHHHHHHHhcCCceEEEECCcc
Confidence            1       112579998877544

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=89.11  E-value=0.064  Score=37.99  Aligned_cols=92  Identities=18%  Similarity=0.183  Sum_probs=55.4

Q ss_pred             CCCCcEEEeCCCc--ChHHHHHHh-hCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc-
Q 029065           41 LKGKRVIELGAGC--GVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  115 (199)
Q Consensus        41 ~~~~~VLdlGcG~--G~~sl~la~-~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~-  115 (199)
                      -+|.+||=.|++.  |...+.+|+ .|++|++++.+ +-++.++.    .+..            . .   .+..+.+. 
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~----~Ga~------------~-v---i~~~~~~~~   87 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGFD------------A-A---FNYKTVNSL   87 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCS------------E-E---EETTSCSCH
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHh----hhhh------------h-h---cccccccHH
Confidence            3688999888865  566677775 48999999864 34444433    2311            1 1   11111111 


Q ss_pred             ----ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEEE
Q 029065          116 ----IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY  159 (199)
Q Consensus       116 ----~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~~  159 (199)
                          .....+.+|+|+-.-       -.+.++...+.++++|.+++..
T Consensus        88 ~~~~~~~~~~Gvd~v~D~v-------G~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          88 EEALKKASPDGYDCYFDNV-------GGEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             HHHHHHHCTTCEEEEEESS-------CHHHHHHHGGGEEEEEEEEECC
T ss_pred             HHHHHHhhcCCCceeEEec-------CchhhhhhhhhccCCCeEEeec
Confidence                011235699877531       2467888999999999877653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=89.01  E-value=0.59  Score=31.98  Aligned_cols=84  Identities=12%  Similarity=0.133  Sum_probs=50.4

Q ss_pred             cEEEeCCCc-C-hHHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccccccCC
Q 029065           45 RVIELGAGC-G-VAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  121 (199)
Q Consensus        45 ~VLdlGcG~-G-~~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~  121 (199)
                      +|.=||+|. | .++..+...|.+|++.|.+ +.++.+++    .+.              +....   ...+    .-.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~--------------~~~~~---~~~~----~~~   56 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQL--------------VDEAG---QDLS----LLQ   56 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTS--------------CSEEE---SCGG----GGT
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhc--------------cceee---eecc----ccc
Confidence            455677764 3 4555666779999999984 45554432    221              11111   1111    125


Q ss_pred             CccEEEEeccccCCcChHHHHHHHHHhcCCCcEEE
Q 029065          122 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL  156 (199)
Q Consensus       122 ~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~  156 (199)
                      ..|+|+.+-+   ......+++.+...++++..+.
T Consensus        57 ~~DiIilavp---~~~~~~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          57 TAKIIFLCTP---IQLILPTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             TCSEEEECSC---HHHHHHHHHHHGGGSCTTCEEE
T ss_pred             ccccccccCc---Hhhhhhhhhhhhhhccccccee
Confidence            7899987644   2567788888888888887553

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.90  E-value=0.27  Score=34.54  Aligned_cols=43  Identities=16%  Similarity=0.162  Sum_probs=32.8

Q ss_pred             CCCCCcEEEeCCCc-ChHHHHHHhh-CC-eEEEeec-hhHHHHHHHH
Q 029065           40 KLKGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRN   82 (199)
Q Consensus        40 ~~~~~~VLdlGcG~-G~~sl~la~~-g~-~v~~~D~-~~~l~~a~~~   82 (199)
                      .-+|.+||=+|||. |+.++.+++. |+ +|+++|. ++-++.|++.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            34678999999986 7888777765 64 6999998 4577777654

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=87.63  E-value=3.4  Score=31.21  Aligned_cols=109  Identities=14%  Similarity=0.113  Sum_probs=68.3

Q ss_pred             CcEEEeCCCcChHHHHHHh-hCCeEEEeechhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc-----
Q 029065           44 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-----  117 (199)
Q Consensus        44 ~~VLdlGcG~G~~sl~la~-~g~~v~~~D~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~-----  117 (199)
                      ..|+.||||.=.-+.-+.. .+.+++=+|.+++++.-++.+..++..         ...+......|+.+.....     
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~---------~~~~~~~v~~Dl~~~~~~~L~~~g  161 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVT---------PTADRREVPIDLRQDWPPALRSAG  161 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCC---------CSSEEEEEECCTTSCHHHHHHHTT
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCC---------CCceEEEecccccchHHHHHHhcC
Confidence            3567799997654444432 245688888888887777777665431         1235666777765431111     


Q ss_pred             ccCCCccEEEEeccccC--CcChHHHHHHHHHhcCCCcEEEEEEEe
Q 029065          118 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI  161 (199)
Q Consensus       118 ~~~~~fD~Ii~~~~~~~--~~~~~~~l~~l~~~l~~~g~i~i~~~~  161 (199)
                      .....--++++-.++++  .+....+++.+..+..||+.+.+....
T Consensus       162 ~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~  207 (297)
T d2uyoa1         162 FDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  207 (297)
T ss_dssp             CCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            11123445555555544  567899999999999999988876644

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.34  E-value=0.93  Score=29.78  Aligned_cols=87  Identities=14%  Similarity=0.173  Sum_probs=47.1

Q ss_pred             cEEEeCCCcChHHHHHH----hhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccccc
Q 029065           45 RVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  119 (199)
Q Consensus        45 ~VLdlGcG~G~~sl~la----~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  119 (199)
                      +|+=+|+  |..|..++    ..|..|+.+|. ++.++.++...                  .+.+...|..+.+.+...
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~------------------~~~vi~Gd~~~~~~l~~~   61 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI------------------DALVINGDCTKIKTLEDA   61 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------------------SSEEEESCTTSHHHHHHT
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh------------------hhhhccCcccchhhhhhc
Confidence            4555665  55555554    45889999998 44555543321                  235566666555433222


Q ss_pred             -CCCccEEEEeccccCCcChHHHHHHHHHhcCCCcE
Q 029065          120 -APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT  154 (199)
Q Consensus       120 -~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~  154 (199)
                       -...|.+++.-.   .....-++....+.+.+...
T Consensus        62 ~i~~a~~vv~~t~---~d~~N~~~~~~~k~~~~~~i   94 (132)
T d1lssa_          62 GIEDADMYIAVTG---KEEVNLMSSLLAKSYGINKT   94 (132)
T ss_dssp             TTTTCSEEEECCS---CHHHHHHHHHHHHHTTCCCE
T ss_pred             ChhhhhhhcccCC---cHHHHHHHHHHHHHcCCceE
Confidence             256888887421   12233344444555676644

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=87.25  E-value=0.25  Score=30.86  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=26.3

Q ss_pred             CCCCCcEEEeCCC-cCh-HHHHHHhhCCeEEEeec
Q 029065           40 KLKGKRVIELGAG-CGV-AGFGMALLGCNVITTDQ   72 (199)
Q Consensus        40 ~~~~~~VLdlGcG-~G~-~sl~la~~g~~v~~~D~   72 (199)
                      .++|++|+=+|-| +|. .+.+|++.|++|++.|.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~   36 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDT   36 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeC
Confidence            4789999999997 464 44556677999999996

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=87.03  E-value=0.82  Score=35.81  Aligned_cols=41  Identities=22%  Similarity=0.204  Sum_probs=28.4

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh---------CCeEEEeechhHHHHHHHH
Q 029065           42 KGKRVIELGAGCGVAGFGMALL---------GCNVITTDQIEVLPLLKRN   82 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~---------g~~v~~~D~~~~l~~a~~~   82 (199)
                      +..+|+|+|+|.|.++.-+.+.         ..+++.++.++.++..+++
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~  128 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT  128 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHH
Confidence            3468999999999876544331         2248889987766665554

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=86.69  E-value=0.41  Score=33.89  Aligned_cols=103  Identities=17%  Similarity=0.196  Sum_probs=55.0

Q ss_pred             CcEEEeCCCc-Ch-HHHHHHhhCCeEEEeec-hhHHHHHHHHHHHhhhcccc---CCC--CCCCCCcEEEEEeeeCCCcc
Q 029065           44 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQ---MNP--GSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        44 ~~VLdlGcG~-G~-~sl~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~---~~~--~~~~~~~i~~~~~d~~~~~~  115 (199)
                      ++|-=||+|+ |. ++..++..|.+|+..|. ++.++.+...+..+-.....   ..+  ......++.... +..    
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-~~~----   79 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTL-SYG----   79 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEES-SST----
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccc-ccc----
Confidence            3577789986 43 56677778999999998 44777776655433110000   000  000001122211 110    


Q ss_pred             ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEE
Q 029065          116 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI  155 (199)
Q Consensus       116 ~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i  155 (199)
                         .-...|+|+-+ .....+...+++..+.+++.++..+
T Consensus        80 ---~~~~adlViEa-v~E~l~~K~~lf~~l~~~~~~~~Ii  115 (186)
T d1wdka3          80 ---DFGNVDLVVEA-VVENPKVKQAVLAEVENHVREDAIL  115 (186)
T ss_dssp             ---TGGGCSEEEEC-CCSCHHHHHHHHHHHHTTSCTTCEE
T ss_pred             ---cccccceeeee-ecchHHHHHHHHHHHHhhcCCCeeE
Confidence               11346777753 3344555677788888877777643

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=86.30  E-value=1.3  Score=35.12  Aligned_cols=46  Identities=17%  Similarity=0.144  Sum_probs=36.9

Q ss_pred             CCCcEEEeCCCcChHHHHHHhh----CCeEEEeec-hhHHHHHHHHHHHhh
Q 029065           42 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNT   87 (199)
Q Consensus        42 ~~~~VLdlGcG~G~~sl~la~~----g~~v~~~D~-~~~l~~a~~~~~~~~   87 (199)
                      ++..++|+||-.|..+..++..    +.+|++++. +...+.+++|+..+.
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~  262 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYT  262 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcc
Confidence            4679999999999888766642    357999998 558889999988764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.28  E-value=1  Score=28.23  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=26.1

Q ss_pred             CCCCCCCcEEEeCC-CcChH--HHHHHhhCCeEEEeec
Q 029065           38 PSKLKGKRVIELGA-GCGVA--GFGMALLGCNVITTDQ   72 (199)
Q Consensus        38 ~~~~~~~~VLdlGc-G~G~~--sl~la~~g~~v~~~D~   72 (199)
                      |..-+.++|.=||. |+|+-  +..+...|..|++.|.
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~   40 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDI   40 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEES
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeC
Confidence            33445678888886 57864  5666678999999997

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.89  E-value=1.1  Score=32.83  Aligned_cols=78  Identities=17%  Similarity=0.219  Sum_probs=50.1

Q ss_pred             CCCCCcEEEeCCCc--C---hHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           40 KLKGKRVIELGAGC--G---VAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        40 ~~~~~~VLdlGcG~--G---~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      .++||++|=-|++.  |   .++..++..|++|+.+|.++ ..+.+.+.....+              ...+...|..+.
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~--------------~~~~~~~D~~~~   70 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG--------------GALLFRADVTQD   70 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT--------------CCEEEECCTTCH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccC--------------cccccccccCCH
Confidence            57899999999743  4   26677778899999998754 5555544433332              345667777655


Q ss_pred             cccc-------ccCCCccEEEEecc
Q 029065          114 DHIK-------AVAPPFDYIIGTDV  131 (199)
Q Consensus       114 ~~~~-------~~~~~fD~Ii~~~~  131 (199)
                      +...       ..-++.|++|-+..
T Consensus        71 ~~v~~~~~~~~~~~g~iDilVnnag   95 (256)
T d1ulua_          71 EELDALFAGVKEAFGGLDYLVHAIA   95 (256)
T ss_dssp             HHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCceEEEeccc
Confidence            3221       11257898886643

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=0.85  Score=33.29  Aligned_cols=40  Identities=15%  Similarity=0.127  Sum_probs=30.9

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeechh-HHHHH
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIE-VLPLL   79 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~~-~l~~a   79 (199)
                      .++||.+|=-|++.|+   ++..++..|++|+++|.+. .++.+
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   45 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQ   45 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            4789999999998874   5677777899999999843 44433

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=83.45  E-value=1.1  Score=33.00  Aligned_cols=79  Identities=22%  Similarity=0.171  Sum_probs=48.3

Q ss_pred             CCCCCcEEEeCC-C---cC-hHHHHHHhhCCeEEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC
Q 029065           40 KLKGKRVIELGA-G---CG-VAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  113 (199)
Q Consensus        40 ~~~~~~VLdlGc-G---~G-~~sl~la~~g~~v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~  113 (199)
                      .++||++|=.|+ |   .| .++..++..|++|+++|.++ ..+.+++-.....              ...+...|....
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~--------------~~~~~~~d~~~~   67 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELN--------------SPYVYELDVSKE   67 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTT--------------CCCEEECCTTCH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCC--------------ceeEeeecccch
Confidence            468999999996 3   33 36677777899999999855 4444443322221              334455565544


Q ss_pred             ccc-------cccCCCccEEEEeccc
Q 029065          114 DHI-------KAVAPPFDYIIGTDVV  132 (199)
Q Consensus       114 ~~~-------~~~~~~fD~Ii~~~~~  132 (199)
                      ...       ...-+..|+++.+...
T Consensus        68 ~~~~~~~~~~~~~~g~id~lV~nag~   93 (274)
T d2pd4a1          68 EHFKSLYNSVKKDLGSLDFIVHSVAF   93 (274)
T ss_dssp             HHHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred             hhHHHHHHHHHHHcCCCCeEEeeccc
Confidence            321       1224678998877554

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=83.13  E-value=0.77  Score=34.70  Aligned_cols=110  Identities=9%  Similarity=-0.049  Sum_probs=72.4

Q ss_pred             CcChHHH--HHHhhCCeEEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc-cccccCCCccEEE
Q 029065           52 GCGVAGF--GMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYII  127 (199)
Q Consensus        52 G~G~~sl--~la~~g~~v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~~fD~Ii  127 (199)
                      -+|.+.+  .+.+..-+.++.|+ ++-.+..++++..              ..++.+.+.|--..- ..-++..+--+|+
T Consensus        90 YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~--------------~~~~~v~~~DG~~~l~allPP~~rRgLVL  155 (271)
T d2oo3a1          90 YPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF--------------NKKVYVNHTDGVSKLNALLPPPEKRGLIF  155 (271)
T ss_dssp             EECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT--------------TSCEEEECSCHHHHHHHHCSCTTSCEEEE
T ss_pred             CCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhcc--------------CCCceEEcCchHHHHHhhCCCCCCceEEE
Confidence            3455444  44455667999998 6554555444322              246777765532111 1112344566888


Q ss_pred             EeccccCCcChHHHHHHHHHhcC--CCcEEEEEEEecChhHHHHHHHHHH
Q 029065          128 GTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVHEQMLQMWK  175 (199)
Q Consensus       128 ~~~~~~~~~~~~~~l~~l~~~l~--~~g~i~i~~~~~~~~~~~~~~~~~~  175 (199)
                      ..+++-...++..+++.+.+.++  +.|++.|=+|.........|.+.+.
T Consensus       156 IDPpYE~k~ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~  205 (271)
T d2oo3a1         156 IDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMR  205 (271)
T ss_dssp             ECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred             ecCCcCCHHHHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHH
Confidence            87777778899999999999987  7899888899877776777777764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=81.25  E-value=2.1  Score=31.80  Aligned_cols=76  Identities=22%  Similarity=0.219  Sum_probs=50.2

Q ss_pred             CCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCccc
Q 029065           41 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  116 (199)
Q Consensus        41 ~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~  116 (199)
                      ++||++|=-|++.|+   ++..+++.|++|+++|.+ +.++.+....   +             .++.....|..+.+..
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~---~-------------~~~~~~~~Dv~~~~~~   66 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH---G-------------DNVLGIVGDVRSLEDQ   66 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G-------------GGEEEEECCTTCHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C-------------CCeeEEecccccHHHH
Confidence            579999999998774   666777789999999984 4444333322   1             2567777887665422


Q ss_pred             c-------ccCCCccEEEEeccc
Q 029065          117 K-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       117 ~-------~~~~~fD~Ii~~~~~  132 (199)
                      .       ..-++.|+++.+.-+
T Consensus        67 ~~~~~~~~~~~g~idilvnnAG~   89 (276)
T d1bdba_          67 KQAASRCVARFGKIDTLIPNAGI   89 (276)
T ss_dssp             HHHHHHHHHHHSCCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCcccccccccc
Confidence            1       112578998876543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=81.22  E-value=0.34  Score=35.89  Aligned_cols=41  Identities=12%  Similarity=-0.021  Sum_probs=31.1

Q ss_pred             CCCccEEEEeccccCC-----------cChHHHHHHHHHhcCCCcEEEEEEE
Q 029065          120 APPFDYIIGTDVVYAE-----------HLLEPLLQTIFALSGPKTTILLGYE  160 (199)
Q Consensus       120 ~~~fD~Ii~~~~~~~~-----------~~~~~~l~~l~~~l~~~g~i~i~~~  160 (199)
                      ++++|+|+.++|+.-.           .....++..+.++|+|+|.+++...
T Consensus        21 d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_          21 DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG   72 (279)
T ss_dssp             TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence            5789999999986421           1246677888999999999887553

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=80.96  E-value=0.87  Score=31.24  Aligned_cols=93  Identities=13%  Similarity=0.057  Sum_probs=54.6

Q ss_pred             CCCCCcEEEeCCCc-ChHHHHHHh-hCCe-EEEeechh-HHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCC-c
Q 029065           40 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  114 (199)
Q Consensus        40 ~~~~~~VLdlGcG~-G~~sl~la~-~g~~-v~~~D~~~-~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~-~  114 (199)
                      .-+|.+||=.|||. |..++.+++ .|++ |+++|.++ -++.+++.    +..              .+  .+..+. +
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga~--------------~~--i~~~~~~~   85 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GAT--------------EC--INPQDFSK   85 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TCS--------------EE--ECGGGCSS
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CCc--------------EE--EeCCchhh
Confidence            34678999999974 566666665 4765 88888744 56665542    211              11  112111 1


Q ss_pred             c-----ccccCCCccEEEEeccccCCcChHHHHHHHHHhcCCCcEEEEE
Q 029065          115 H-----IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG  158 (199)
Q Consensus       115 ~-----~~~~~~~fD~Ii~~~~~~~~~~~~~~l~~l~~~l~~~g~i~i~  158 (199)
                      .     .....+.+|+|+-.-      -...+++....++++++.+.+.
T Consensus        86 ~~~~~~~~~~~~g~D~vid~~------G~~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          86 PIQEVLIEMTDGGVDYSFECI------GNVKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             CHHHHHHHHTTSCBSEEEECS------CCHHHHHHHHHTBCTTTCEEEE
T ss_pred             HHHHHHHHHcCCCCcEeeecC------CCHHHHHHHHHhhcCCceeEEE
Confidence            0     011235799888652      3446778888889988665443

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=80.85  E-value=1.3  Score=32.59  Aligned_cols=74  Identities=18%  Similarity=0.157  Sum_probs=48.2

Q ss_pred             CCCCCcEEEeCCCcCh---HHHHHHhhCCeEEEeech-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcc
Q 029065           40 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  115 (199)
Q Consensus        40 ~~~~~~VLdlGcG~G~---~sl~la~~g~~v~~~D~~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~  115 (199)
                      .++||++|=-|++.|+   ++..++..|++|+++|.+ +..+.++.    .               ...+..+|..+...
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~----~---------------~~~~~~~Dv~~~~~   62 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEA----I---------------GGAFFQVDLEDERE   62 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHH----H---------------TCEEEECCTTCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----c---------------CCeEEEEeCCCHHH
Confidence            4789999999998774   566777789999999984 35443321    1               12455677765532


Q ss_pred             cc-------ccCCCccEEEEeccc
Q 029065          116 IK-------AVAPPFDYIIGTDVV  132 (199)
Q Consensus       116 ~~-------~~~~~fD~Ii~~~~~  132 (199)
                      ..       ..-++.|++|.+.-+
T Consensus        63 v~~~~~~~~~~~G~iDiLVnnAG~   86 (248)
T d2d1ya1          63 RVRFVEEAAYALGRVDVLVNNAAI   86 (248)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHhcCCCCeEEEeCcC
Confidence            11       112689999877544

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=80.63  E-value=2.8  Score=30.53  Aligned_cols=77  Identities=16%  Similarity=0.253  Sum_probs=48.6

Q ss_pred             cEEEeCCCcCh---HHHHHHhhCCeEEEeec-h-hHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCcccc--
Q 029065           45 RVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--  117 (199)
Q Consensus        45 ~VLdlGcG~G~---~sl~la~~g~~v~~~D~-~-~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~--  117 (199)
                      .||=-|++.|+   ++..+++.|++|+.+|. + +.++.+.+.+...+             .++.+..+|..+.+...  
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~Dv~~~~~v~~~   69 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG-------------GQAITFGGDVSKEADVEAM   69 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHT-------------CEEEEEECCTTSHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC-------------CcEEEEeCCCCCHHHHHHH
Confidence            34555766653   55666677999998886 3 36666666555443             25677788887664321  


Q ss_pred             -----ccCCCccEEEEeccccC
Q 029065          118 -----AVAPPFDYIIGTDVVYA  134 (199)
Q Consensus       118 -----~~~~~fD~Ii~~~~~~~  134 (199)
                           ..-++.|++|.+.....
T Consensus        70 ~~~~~~~~g~iDiLVnnAg~~~   91 (244)
T d1edoa_          70 MKTAIDAWGTIDVVVNNAGITR   91 (244)
T ss_dssp             HHHHHHHSSCCSEEEECCCCCC
T ss_pred             HHHHHHHcCCCCcccccccccc
Confidence                 11368999988765543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=80.54  E-value=0.6  Score=32.75  Aligned_cols=84  Identities=17%  Similarity=0.141  Sum_probs=43.7

Q ss_pred             CCCCCCcEEEeCCCcCh--HHHHHHhhCCe-EEEeec-hhHHHHHHHHHHHhhhccccCCCCCCCCCcEEEEEeeeCCCc
Q 029065           39 SKLKGKRVIELGAGCGV--AGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  114 (199)
Q Consensus        39 ~~~~~~~VLdlGcG~G~--~sl~la~~g~~-v~~~D~-~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~  114 (199)
                      ..+++++||=||||--.  ....++..|.+ ++..+. .+.++.+..-+..-+..          . .......+|.+..
T Consensus        14 ~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~----------~-~~~~~~~~~~~~~   82 (182)
T d1vi2a1          14 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNEN----------T-DCVVTVTDLADQQ   82 (182)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH----------S-SCEEEEEETTCHH
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhh----------c-CcceEeeeccccc
Confidence            35689999999998422  23344455765 777775 33333333222111110          1 2234445665443


Q ss_pred             cccccCCCccEEEEecccc
Q 029065          115 HIKAVAPPFDYIIGTDVVY  133 (199)
Q Consensus       115 ~~~~~~~~fD~Ii~~~~~~  133 (199)
                      ........+|+||-+-++-
T Consensus        83 ~~~~~~~~~diiIN~Tp~G  101 (182)
T d1vi2a1          83 AFAEALASADILTNGTKVG  101 (182)
T ss_dssp             HHHHHHHTCSEEEECSSTT
T ss_pred             chhhhhcccceeccccCCc
Confidence            2222234788888776553

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=80.05  E-value=6.2  Score=28.90  Aligned_cols=44  Identities=23%  Similarity=0.422  Sum_probs=32.8

Q ss_pred             CCCCCCCcEEEeCCCc--Ch---HHHHHHhhCCeEEEeechhHHHHHHH
Q 029065           38 PSKLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQIEVLPLLKR   81 (199)
Q Consensus        38 ~~~~~~~~VLdlGcG~--G~---~sl~la~~g~~v~~~D~~~~l~~a~~   81 (199)
                      |..++||++|=-|+++  |+   ++..+++.|++|+.++.+........
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~   51 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFET   51 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHH
Confidence            5678999999999753  53   77788888999999997553333333