Citrus Sinensis ID: 029077

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQ
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEccccccHHHHHHHHccccccccccccccEEEEEEEEEEcccEEEEEEEEcccccccccccccEEEcccEEEEEEEcccHHHcccHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHccccccccccccccccEEEccccHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEEEccccccHHHHHccEHHHHHccEEEccccEEEEEEEEEEccEEEEEEEEEEccHHHcccccHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHHccccEEEEEEccccccccccHHHHcccccccEEEEEEEHHHcEcccHHHHHHHHHHHccccccEcccccEccccccccHHHHHH
Coil and Loop (DISEMBL)
malpnqqtvdypsfklvivgdggtgkTTFVKRHLtgefekkyeptigvevhpldfftncgkirfycwdtagqekfgglrdgyyihgqCAIIMFDVTArltyknvptwhrdlcrvcenipivlcgnkvdvknrqvKAKQVTFHRKKNLQYYEISAksnynfekPFLYLARKlagdpnlhfvespalappevQIDLAAQQQ
Flexible Loop (DISEMBL)
malpnqqtvdypsfklvivgdggtgKTTFVKRHltgefekkyeptigvevhpldFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPivlcgnkvdvknrqvkakqvtfhrkknlqyYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQ
Low Complexity Region (SEG)
MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQ
Disordered region (IsUnstruct)
********VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE******************
Disordered Region (DISOPRED)
***********PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG**************************
Disordered Region (DISEMBL)
MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQ
Disordered Region (DISPRO)
******QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF**S*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q8H156	221	GTP-binding nuclear prote	yes	no	1.0	0.900	0.994	1e-116
P41919	221	GTP-binding nuclear prote	N/A	no	0.994	0.895	0.994	1e-116
P41918	221	GTP-binding nuclear prote	N/A	no	1.0	0.900	0.989	1e-116
P38547	221	GTP-binding nuclear prote	N/A	no	0.989	0.891	0.994	1e-115
P41917	221	GTP-binding nuclear prote	yes	no	1.0	0.900	0.979	1e-115
P38548	221	GTP-binding nuclear prote	N/A	no	1.0	0.900	0.979	1e-114
P38546	221	GTP-binding nuclear prote	N/A	no	0.989	0.891	0.989	1e-114
Q7F7I7	221	GTP-binding nuclear prote	yes	no	1.0	0.900	0.969	1e-114
A2WSI7	221	GTP-binding nuclear prote	N/A	no	1.0	0.900	0.969	1e-114
P41916	221	GTP-binding nuclear prote	yes	no	1.0	0.900	0.969	1e-113

>sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2

 Score =  417 bits (1073), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 198/199 (99%), Positives = 198/199 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEVQIDLAAQQQ
Sbjct: 181 ESPALAPPEVQIDLAAQQQ 199

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.
Arabidopsis thaliana (taxid: 3702)

>sp|P41919|RANB1_TOBAC GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1

 Score =  416 bits (1069), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/198 (99%), Positives = 197/198 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQ 198
           ESPALAPPEVQIDLAAQQ
Sbjct: 181 ESPALAPPEVQIDLAAQQ 198

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Nicotiana tabacum (taxid: 4097)

>sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1

 Score =  416 bits (1068), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/199 (98%), Positives = 197/199 (98%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP QQ VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPGQQAVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEVQIDLAAQQQ
Sbjct: 181 ESPALAPPEVQIDLAAQQQ 199

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Nicotiana tabacum (taxid: 4097)

>sp|P38547|RAN2_SOLLC GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1

 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/197 (99%), Positives = 196/197 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQ 197
           ESPALAPPEVQIDLAAQ
Sbjct: 181 ESPALAPPEVQIDLAAQ 197

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Solanum lycopersicum (taxid: 4081)

>sp|P41917|RAN2_ARATH GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3

 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/199 (97%), Positives = 197/199 (98%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEV +D+AAQQQ
Sbjct: 181 ESPALAPPEVHLDIAAQQQ 199

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Arabidopsis thaliana (taxid: 3702)

>sp|P38548|RAN_VICFA GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1

 Score =  412 bits (1058), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/199 (97%), Positives = 197/199 (98%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEVQID+A QQ+
Sbjct: 181 ESPALAPPEVQIDIALQQR 199

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Vicia faba (taxid: 3906)

>sp|P38546|RAN1_SOLLC GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1

 Score =  410 bits (1053), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/197 (98%), Positives = 195/197 (98%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQ 197
           ESPALAPPEV IDLAAQ
Sbjct: 181 ESPALAPPEVHIDLAAQ 197

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Solanum lycopersicum (taxid: 4081)

>sp|Q7F7I7|RAN1_ORYSJ GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. japonica GN=RAN1 PE=2 SV=1

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/199 (96%), Positives = 197/199 (98%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGDGNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           E+PALAPP+V IDLAAQQQ
Sbjct: 181 ETPALAPPDVTIDLAAQQQ 199

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2WSI7|RAN1_ORYSI GTP-binding nuclear protein Ran-1 OS=Oryza sativa subsp. indica GN=RAN1 PE=2 SV=2

 Score =  409 bits (1051), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 193/199 (96%), Positives = 197/199 (98%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE+SAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEVSAKSNYNFEKPFLYLARKLAGDGNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           E+PALAPP+V IDLAAQQQ
Sbjct: 181 ETPALAPPDVTIDLAAQQQ 199

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P41916|RAN1_ARATH GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1

 Score =  408 bits (1049), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/199 (96%), Positives = 196/199 (98%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           E+PALAPPEV ID+A QQ+
Sbjct: 181 ETPALAPPEVHIDIADQQK 199

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
297743387	267	unnamed protein product [Vitis vinifera]	1.0	0.745	0.989	1e-115
356507752	221	PREDICTED: GTP-binding nuclear protein R	1.0	0.900	1.0	1e-115
297738907	260	unnamed protein product [Vitis vinifera]	1.0	0.765	0.994	1e-115
20149262	221	GTP-binding protein [Helianthus annuus]	1.0	0.900	0.994	1e-115
296081995	254	unnamed protein product [Vitis vinifera]	1.0	0.783	0.994	1e-115
388518503	221	unknown [Lotus japonicus]	1.0	0.900	0.994	1e-115
388519813	221	unknown [Lotus japonicus]	1.0	0.900	0.994	1e-115
10334503	221	GTP-binding protein [Cicer arietinum]	1.0	0.900	0.994	1e-115
15240474	221	GTP-binding nuclear protein Ran-3 [Arabi	1.0	0.900	0.994	1e-115
225430202	221	PREDICTED: GTP-binding nuclear protein R	1.0	0.900	0.994	1e-115

>gi|297743387|emb|CBI36254.3| unnamed protein product [Vitis vinifera]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 197/199 (98%), Positives = 198/199 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 47  MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 106

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 107 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 166

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 167 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 226

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEVQID+AAQQQ
Sbjct: 227 ESPALAPPEVQIDMAAQQQ 245

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507752|ref|XP_003522628.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Glycine max] gi|356507754|ref|XP_003522629.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Glycine max]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEVQIDLAAQQQ
Sbjct: 181 ESPALAPPEVQIDLAAQQQ 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738907|emb|CBI28152.3| unnamed protein product [Vitis vinifera]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/199 (99%), Positives = 198/199 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 40  MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 99

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 100 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 159

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 160 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 219

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEV IDLAAQQQ
Sbjct: 220 ESPALAPPEVHIDLAAQQQ 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20149262|gb|AAM12880.1|AF495716_1 GTP-binding protein [Helianthus annuus]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/199 (99%), Positives = 199/199 (100%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEVQID+AAQQQ
Sbjct: 181 ESPALAPPEVQIDMAAQQQ 199

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081995|emb|CBI21000.3| unnamed protein product [Vitis vinifera]

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/199 (99%), Positives = 198/199 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 34  MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 93

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 94  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 153

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 154 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 213

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEV IDLAAQQQ
Sbjct: 214 ESPALAPPEVHIDLAAQQQ 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518503|gb|AFK47313.1| unknown [Lotus japonicus]

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/199 (99%), Positives = 199/199 (100%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYP+FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPNFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEVQIDLAAQQQ
Sbjct: 181 ESPALAPPEVQIDLAAQQQ 199

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519813|gb|AFK47968.1| unknown [Lotus japonicus]

 Score =  418 bits (1074), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/199 (99%), Positives = 199/199 (100%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYP+FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPNFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEVQIDLAAQQQ
Sbjct: 181 ESPALAPPEVQIDLAAQQQ 199

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10334503|emb|CAC10213.1| GTP-binding protein [Cicer arietinum]

 Score =  417 bits (1073), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/199 (99%), Positives = 198/199 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEVQIDL AQQQ
Sbjct: 181 ESPALAPPEVQIDLVAQQQ 199

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240474|ref|NP_200330.1| GTP-binding nuclear protein Ran-3 [Arabidopsis thaliana] gi|76789666|sp|Q8H156.2|RAN3_ARATH RecName: Full=GTP-binding nuclear protein Ran-3; AltName: Full=Ras-related nuclear protein 3 gi|2149051|gb|AAB58478.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|9758116|dbj|BAB08588.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|14596017|gb|AAK68736.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|15215578|gb|AAK91334.1| AT5g55190/MCO15_14 [Arabidopsis thaliana] gi|21435991|gb|AAM51573.1| AT5g55190/MCO15_14 [Arabidopsis thaliana] gi|332009215|gb|AED96598.1| GTP-binding nuclear protein Ran-3 [Arabidopsis thaliana]

 Score =  417 bits (1073), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/199 (99%), Positives = 198/199 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEVQIDLAAQQQ
Sbjct: 181 ESPALAPPEVQIDLAAQQQ 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430202|ref|XP_002284967.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera] gi|225445410|ref|XP_002285018.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera]

 Score =  417 bits (1073), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/199 (99%), Positives = 198/199 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEV IDLAAQQQ
Sbjct: 181 ESPALAPPEVHIDLAAQQQ 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2161600	221	RAN3 "RAN GTPase 3" [Arabidops	1.0	0.900	0.994	1.9e-108
TAIR|locus:2147715	221	RAN2 "RAS-related GTP-binding	1.0	0.900	0.979	1.7e-107
TAIR|locus:2147700	221	RAN-1 "RAS-related nuclear pro	1.0	0.900	0.969	2.5e-106
SGD|S000005711	220	GSP2 "GTP binding protein (mam	0.969	0.877	0.813	6.9e-86
SGD|S000004284	219	GSP1 "Ran GTPase" [Saccharomyc	0.954	0.867	0.821	8e-85
WB|WBGene00004302	215	ran-1 [Caenorhabditis elegans	0.924	0.855	0.853	1.3e-84
UNIPROTKB|O17915	215	ran-1 "GTP-binding nuclear pro	0.924	0.855	0.853	1.3e-84
CGD|CAL0005360	214	GSP1 [Candida albicans (taxid:	0.954	0.887	0.8	2.4e-83
UNIPROTKB|Q59P43	214	GSP1 "RAN-like GTP binding pro	0.954	0.887	0.8	2.4e-83
FB|FBgn0020255	216	Ran "Ran" [Drosophila melanoga	0.974	0.898	0.783	1e-82

TAIR|locus:2161600 RAN3 "RAN GTPase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 198/199 (99%), Positives = 198/199 (99%)

Query:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
             MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
             KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
             VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query:   181 ESPALAPPEVQIDLAAQQQ 199
             ESPALAPPEVQIDLAAQQQ
Sbjct:   181 ESPALAPPEVQIDLAAQQQ 199

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2147715 RAN2 "RAS-related GTP-binding nuclear protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
 Identities = 195/199 (97%), Positives = 197/199 (98%)

Query:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
             MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
             KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
             VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query:   181 ESPALAPPEVQIDLAAQQQ 199
             ESPALAPPEV +D+AAQQQ
Sbjct:   181 ESPALAPPEVHLDIAAQQQ 199

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=TAS

TAIR|locus:2147700 RAN-1 "RAS-related nuclear protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 193/199 (96%), Positives = 196/199 (98%)

Query:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
             MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
             KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
             VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query:   181 ESPALAPPEVQIDLAAQQQ 199
             E+PALAPPEV ID+A QQ+
Sbjct:   181 ETPALAPPEVHIDIADQQK 199

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=TAS

SGD|S000005711 GSP2 "GTP binding protein (mammalian Ranp homolog)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 157/193 (81%), Positives = 173/193 (89%)

Query:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
             M+ P Q   + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G
Sbjct:     1 MSAPAQNNAEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG 60

Query:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
             +I+F  WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct:    61 EIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 120

Query:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
             VLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct:   121 VLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 180

Query:   181 ESPALAPPEVQID 193
              SPALAPPEVQ+D
Sbjct:   181 ASPALAPPEVQVD 193

GO:0005634 "nucleus" evidence=IEA;IGI;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IGI;ISS

GO:0006997 "nucleus organization" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

SGD|S000004284 GSP1 "Ran GTPase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 156/190 (82%), Positives = 171/190 (90%)

Query:    10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
             + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDT
Sbjct:     9 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 68

Query:    70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
             AGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct:    69 AGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 128

Query:   130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189
             K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPE
Sbjct:   129 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPE 188

Query:   190 VQIDLAAQQQ 199
             VQ+D    QQ
Sbjct:   189 VQVDEQLMQQ 198

GO:0005737 "cytoplasm" evidence=TAS

GO:0006913 "nucleocytoplasmic transport" evidence=IEA;TAS

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000467 "exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0031938 "regulation of chromatin silencing at telomere" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IGI;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006997 "nucleus organization" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=ISM

WB|WBGene00004302 ran-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 157/184 (85%), Positives = 168/184 (91%)

Query:    12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+IRF  WDTAG
Sbjct:     8 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAG 67

Query:    72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
             QEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+
Sbjct:    68 QEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKD 127

Query:   132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ 191
             R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEVQ
Sbjct:   128 RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQ 187

Query:   192 IDLA 195
             +D A
Sbjct:   188 MDPA 191

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0046785 "microtubule polymerization" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

UNIPROTKB|O17915 ran-1 "GTP-binding nuclear protein ran-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
 Identities = 157/184 (85%), Positives = 168/184 (91%)

Query:    12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+IRF  WDTAG
Sbjct:     8 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAG 67

Query:    72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
             QEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+
Sbjct:    68 QEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKD 127

Query:   132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ 191
             R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEVQ
Sbjct:   128 RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQ 187

Query:   192 IDLA 195
             +D A
Sbjct:   188 MDPA 191

GO:0005515 "protein binding" evidence=IPI

CGD|CAL0005360 GSP1 [Candida albicans (taxid:5476)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 152/190 (80%), Positives = 169/190 (88%)

Query:    10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
             + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+++F  WDT
Sbjct:     4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLGFHTNFGELKFDVWDT 63

Query:    70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
             AGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct:    64 AGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 123

Query:   130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189
             K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPE
Sbjct:   124 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPE 183

Query:   190 VQIDLAAQQQ 199
             VQ+D    Q+
Sbjct:   184 VQVDADLMQK 193

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IGI;ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0051276 "chromosome organization" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006997 "nucleus organization" evidence=IEA

GO:0031938 "regulation of chromatin silencing at telomere" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0000467 "exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q59P43 GSP1 "RAN-like GTP binding protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 152/190 (80%), Positives = 169/190 (88%)

Query:    10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
             + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+++F  WDT
Sbjct:     4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLGFHTNFGELKFDVWDT 63

Query:    70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
             AGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct:    64 AGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 123

Query:   130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189
             K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPE
Sbjct:   124 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPE 183

Query:   190 VQIDLAAQQQ 199
             VQ+D    Q+
Sbjct:   184 VQVDADLMQK 193

GO:0003924 "GTPase activity" evidence=IGI;ISS

GO:0005525 "GTP binding" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0051276 "chromosome organization" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=ISS

FB|FBgn0020255 Ran "Ran" [Drosophila melanogaster (taxid:7227)]

 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 152/194 (78%), Positives = 168/194 (86%)

Query:     6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
             Q+  D P+FK V+VGDGGTGKTTFVKRH+TGEFEKKY  T+GVEVHPL F TN G IRF 
Sbjct:     3 QEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFN 62

Query:    66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
              WDTAGQEKFGGLRDGYYI GQCA+IMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGN
Sbjct:    63 VWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGN 122

Query:   126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 185
             KVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PAL
Sbjct:   123 KVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPAL 182

Query:   186 APPEVQIDLAAQQQ 199
              PPEV++D   Q Q
Sbjct:   183 LPPEVKMDKDWQAQ 196

GO:0003924 "GTPase activity" evidence=ISS

GO:0007049 "cell cycle" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0005880 "nuclear microtubule" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0000212 "meiotic spindle organization" evidence=IMP

GO:0072686 "mitotic spindle" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3T054	RAN_BOVIN	No assigned EC number	0.8225	0.9246	0.8518	yes	no
A2WSI7	RAN1_ORYSI	No assigned EC number	0.9698	1.0	0.9004	N/A	no
P54766	RAN1B_LOTJA	No assigned EC number	0.9946	0.9396	0.8947	N/A	no
P54765	RAN1A_LOTJA	No assigned EC number	0.9946	0.9396	0.8947	N/A	no
P41917	RAN2_ARATH	No assigned EC number	0.9798	1.0	0.9004	yes	no
P41916	RAN1_ARATH	No assigned EC number	0.9698	1.0	0.9004	yes	no
P38546	RAN1_SOLLC	No assigned EC number	0.9898	0.9899	0.8914	N/A	no
P38547	RAN2_SOLLC	No assigned EC number	0.9949	0.9899	0.8914	N/A	no
P38542	RAN_BRUMA	No assigned EC number	0.8532	0.9246	0.8558	N/A	no
Q7F7I7	RAN1_ORYSJ	No assigned EC number	0.9698	1.0	0.9004	yes	no
Q9VZ23	RAN_DROME	No assigned EC number	0.7835	0.9748	0.8981	yes	no
P38548	RAN_VICFA	No assigned EC number	0.9798	1.0	0.9004	N/A	no
P41919	RANB1_TOBAC	No assigned EC number	0.9949	0.9949	0.8959	N/A	no
P41918	RANA1_TOBAC	No assigned EC number	0.9899	1.0	0.9004	N/A	no
A2YEQ6	RAN3_ORYSI	No assigned EC number	0.8333	0.9949	0.8761	N/A	no
A2Y7R5	RAN2_ORYSI	No assigned EC number	0.9597	1.0	0.9004	N/A	no
Q6FR65	GSP1_CANGA	No assigned EC number	0.8225	0.9346	0.8691	yes	no
Q4R4M9	RAN_MACFA	No assigned EC number	0.8225	0.9246	0.8518	N/A	no
Q7GD79	RAN2_ORYSJ	No assigned EC number	0.9597	1.0	0.9004	yes	no
Q74ZA9	GSP1_ASHGO	No assigned EC number	0.8072	0.9648	0.8971	yes	no
P62827	RAN_MOUSE	No assigned EC number	0.8225	0.9246	0.8518	yes	no
P38544	RAN_ONCVO	No assigned EC number	0.8260	0.9246	0.8558	N/A	no
P52301	RAN_XENLA	No assigned EC number	0.8225	0.9246	0.8518	N/A	no
P28748	SPI1_SCHPO	No assigned EC number	0.8	0.9698	0.8935	yes	no
P32836	GSP2_YEAST	No assigned EC number	0.8134	0.9698	0.8772	yes	no
P32835	GSP1_YEAST	No assigned EC number	0.8369	0.9246	0.8401	yes	no
Q9FLQ3	RAN4_ARATH	No assigned EC number	0.7512	0.9447	0.8468	no	no
Q5R556	RAN_PONAB	No assigned EC number	0.8225	0.9246	0.8518	yes	no
P79735	RAN_DANRE	No assigned EC number	0.8085	0.9346	0.8651	yes	no
P62828	RAN_RAT	No assigned EC number	0.8225	0.9246	0.8518	yes	no
P41914	RAN_TETPY	No assigned EC number	0.6368	0.9497	0.8475	N/A	no
Q7RVL0	GSP1_NEUCR	No assigned EC number	0.8284	0.8492	0.7860	N/A	no
Q69XM7	RAN3_ORYSJ	No assigned EC number	0.8333	0.9949	0.8761	no	no
Q7ZZX9	RAN_CARAU	No assigned EC number	0.8031	0.9346	0.8651	N/A	no
P62825	RAN_CANFA	No assigned EC number	0.8225	0.9246	0.8518	yes	no
P62826	RAN_HUMAN	No assigned EC number	0.8225	0.9246	0.8518	yes	no
O17915	RAN_CAEEL	No assigned EC number	0.8532	0.9246	0.8558	yes	no
Q9P4E9	GSP1_CANAW	No assigned EC number	0.8	0.9547	0.8878	N/A	no
Q8K586	RANT_RAT	No assigned EC number	0.7903	0.9246	0.8518	no	no
Q9YGC0	RAN_SALSA	No assigned EC number	0.8031	0.9346	0.8651	N/A	no
Q61820	RANT_MOUSE	No assigned EC number	0.7849	0.9246	0.8518	no	no
Q8H156	RAN3_ARATH	No assigned EC number	0.9949	1.0	0.9004	yes	no
P33519	RAN_DICDI	No assigned EC number	0.7055	0.9045	0.8490	yes	no
Q8TFK3	GSP1_YARLI	No assigned EC number	0.7849	0.9346	0.8691	yes	no
P42558	RAN_CHICK	No assigned EC number	0.8225	0.9246	0.8518	yes	no
P38545	RAN_PLAFA	No assigned EC number	0.7377	0.9145	0.8504	yes	no
P41915	RAN_TETTH	No assigned EC number	0.6402	0.9447	0.8355	N/A	no
Q6GL85	RAN_XENTR	No assigned EC number	0.8172	0.9246	0.8518	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034551001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (267 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014046001	SubName- Full=Putative uncharacterized protein (Chromosome chr16 scaffold_10, whole genome shot [...] (1076 aa)					•	•	•		0.824
	GSVIVG00034073001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (992 aa)						•			0.800
	GSVIVG00031073001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (1207 aa)						•			0.800
	GSVIVG00026673001	SubName- Full=Chromosome chr4 scaffold_39, whole genome shotgun sequence; (504 aa)						•			0.800
	GSVIVG00025621001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (483 aa)						•			0.800
	GSVIVG00023150001	RecName- Full=Elongation factor 1-alpha;; This protein promotes the GTP-dependent binding of am [...] (399 aa)						•			0.800
	GSVIVG00022233001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (812 aa)						•			0.800
	GSVIVG00018636001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (144 aa)						•			0.800
	GSVIVG00018233001	RecName- Full=Elongation factor 1-alpha;; This protein promotes the GTP-dependent binding of am [...] (399 aa)						•			0.800
	GSVIVG00034710001	SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (81 aa)			•						0.496

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	1e-170
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-145
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-137
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-132
pfam00071	162	pfam00071, Ras, Ras family	1e-65
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-51
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-42
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-39
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-36
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-35
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	3e-34
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	5e-32
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-31
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	5e-31
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	7e-31
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-30
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-30
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-30
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	3e-30
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-29
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	4e-28
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	6e-28
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-27
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-27
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	4e-27
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	4e-26
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-26
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	7e-26
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	9e-26
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-25
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-25
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	4e-25
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	6e-25
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	8e-25
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-24
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	3e-24
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	3e-24
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	5e-24
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-23
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-23
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-23
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	7e-23
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	5e-22
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	7e-22
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	7e-22
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	8e-22
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	8e-22
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-21
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-21
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	6e-21
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-20
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-20
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	5e-20
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-19
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-19
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-19
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	9e-19
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	2e-18
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-18
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	3e-18
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	7e-18
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	8e-18
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	9e-18
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-17
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	3e-17
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-16
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-16
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-15
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	4e-15
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-14
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-14
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-14
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-13
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-12
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	2e-12
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	4e-12
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-11
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	3e-11
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	6e-11
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-10
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-10
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	3e-10
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	3e-10
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-08
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	4e-08
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	6e-07
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	7e-07
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	5e-06
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	8e-06
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	1e-05
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-05
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	4e-05
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	6e-05
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	2e-04
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	3e-04
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	5e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	6e-04
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	0.002
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	0.003

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  465 bits (1198), Expect = e-170
 Identities = 199/199 (100%), Positives = 199/199 (100%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQ 199
           ESPALAPPEVQIDLAAQQQ
Sbjct: 181 ESPALAPPEVQIDLAAQQQ 199

Length = 219

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  402 bits (1036), Expect = e-145
 Identities = 153/194 (78%), Positives = 169/194 (87%)

Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
           QQ  + P FKL++VGDGG GKTTFVKRHLTGEFEKKY PT+GVEVHPL F+TNCG I F 
Sbjct: 2   QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFN 61

Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
            WDTAGQEKFGGLRDGYYI GQCAIIMFDVT+R+TYKNVP WHRD+ RVCENIPIVL GN
Sbjct: 62  VWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGN 121

Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 185
           KVDVK+RQVKA+Q+TFHRKKNLQYY+ISAKSNYNFEKPFL+LAR+L  DPNL FV +PAL
Sbjct: 122 KVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPAL 181

Query: 186 APPEVQIDLAAQQQ 199
           AP E+QID     Q
Sbjct: 182 APEEIQIDPELVAQ 195

Length = 215

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score =  382 bits (982), Expect = e-137
 Identities = 152/181 (83%), Positives = 160/181 (88%)

Query: 19  VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78
           VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G IRF  WDTAGQEKFGGL
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 79  RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ 138
           RDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKS 120

Query: 139 VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198
           +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D A   
Sbjct: 121 ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAA 180

Query: 199 Q 199
           Q
Sbjct: 181 Q 181

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  367 bits (943), Expect = e-132
 Identities = 144/166 (86%), Positives = 154/166 (92%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPLDF TN GKIRF  WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI GQCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 120

Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 179
           VK KQ+TFHRKKNLQYYEISAKSNYNFEKPFL+LARKL G+PNL F
Sbjct: 121 VKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNLEF 166

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  198 bits (507), Expect = 1e-65
 Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 3/160 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGDGG GK++ + R    +F ++Y PTIGV+ +      +   ++   WDTAGQE+
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-R 132
           F  LR  YY   Q  ++++D+T+R +++NV  W  ++ R   EN+PIVL GNK D+++ R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 133 QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            V  ++     ++  L + E SAK+N N E+ F  LAR++
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREI 160

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  162 bits (413), Expect = 2e-51
 Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 7/161 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GKT+ + R +  +F + Y+ TIGV+        +  K++   WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD-VKN 131
           +F  +   YY     AI+++DVT R +++N+  W  +L      NIPI+L GNK D    
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 132 RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           RQV   +A+Q  F ++  L ++E SAK+  N ++ F  LAR
Sbjct: 121 RQVSTEEAQQ--FAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  139 bits (353), Expect = 2e-42
 Identities = 59/166 (35%), Positives = 98/166 (59%), Gaps = 13/166 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF----FTNCGK-IRFYCWD 68
           FK++++GD G GK++ + R   G+F ++Y+ TIGV     DF        GK ++   WD
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGV-----DFKTKTIEVDGKRVKLQIWD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127
           TAGQE+F  +   YY     A++++D+T R +++N+  W ++L      N+ I+L GNK 
Sbjct: 56  TAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKS 115

Query: 128 DVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D++  RQV  ++   F  +  L ++E SAK+N N E+ F  LAR++
Sbjct: 116 DLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  133 bits (335), Expect = 5e-39
 Identities = 59/181 (32%), Positives = 84/181 (46%), Gaps = 21/181 (11%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             FK+V++GDGG GKTT + R +  EF + Y PTIG              I+   WDTAG
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV 129
           QE++  LR  YY      +I++D T R  + +    W  +L  +  +++PI+L GNK+D+
Sbjct: 64  QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123

Query: 130 KNRQ-----------------VKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLYLARK 170
            + Q                 V A +       N    E SAKS    N  + F  L RK
Sbjct: 124 FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183

Query: 171 L 171
           L
Sbjct: 184 L 184

Length = 219

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  124 bits (314), Expect = 1e-36
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 4/160 (2%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAGQ 72
           K+++VG+G  GK++ ++R + G F K Y+ TIGV+      F       +R   WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           E+F  +   YY   Q  I++F  T R +++ + +W   +   C +IP+VL   K+D+ ++
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121

Query: 133 Q-VKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
             +  ++     ++  L  +  S K ++N  + F YLA K
Sbjct: 122 AVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  121 bits (306), Expect = 2e-35
 Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 27/172 (15%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCGKIR 63
           KLV++G GG GK+    R ++GEF ++Y+PTI           G     LD         
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYT-LDIL------- 52

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
               DTAGQE+F  +RD Y  +G   I+++ +T+R +++ +      + RV   E++PIV
Sbjct: 53  ----DTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIV 108

Query: 122 LCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D++N RQV  ++      +    + E SAK+N N ++ F  L R++
Sbjct: 109 LVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  118 bits (299), Expect = 3e-34
 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 15/168 (8%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYC 66
            FKLV++GD   GK++ V R +  EF +  E TIG       F T      +   ++F  
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAA-----FLTQTVNLDDTT-VKFEI 54

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN 125
           WDTAGQE++  L   YY     AI+++D+T+  +++   +W ++L      NI I L GN
Sbjct: 55  WDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGN 114

Query: 126 KVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D    RQV  ++   +  +  L + E SAK+  N  + F  +ARKL
Sbjct: 115 KADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  113 bits (284), Expect = 5e-32
 Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK++ + R     F++    TIGV+        +  K++   WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN 131
           +F  L   YY   Q  I+++DVT R T+ N+ TW  +L       +   +L GNK+D +N
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 132 RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R+V  ++   F RK N+ + E SAK+    ++ F  L  K+
Sbjct: 121 REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  111 bits (281), Expect = 2e-31
 Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 27/166 (16%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----CGK-IRFYCWD 68
           FK+V++GD G GK+  + R    EF    + TIGVE     F T      GK I+   WD
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVE-----FATRTIQIDGKTIKAQIWD 58

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW------HRDLCRVCENIPIVL 122
           TAGQE++  +   YY     A++++D+T + T++NV  W      H D      NI I+L
Sbjct: 59  TAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHAD-----SNIVIML 113

Query: 123 CGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
            GNK D+++ R V   +AK   F  K  L + E SA    N E+ F
Sbjct: 114 VGNKSDLRHLRAVPTEEAKA--FAEKNGLSFIETSALDGTNVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  110 bits (277), Expect = 5e-31
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 13/166 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-----GKIRFYCWD 68
            KLV +GD   GKT+ + R +   F+ +Y+ TIG+     DF +         +R   WD
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGI-----DFLSKTMYVDDKTVRLQLWD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKV 127
           TAGQE+F  L   Y      A++++D+T R ++ N   W  D+     N   IVL GNK 
Sbjct: 56  TAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKT 115

Query: 128 DV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D+   RQV  ++     ++ N  + E SAK+ +N ++ F  +A+ L
Sbjct: 116 DLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  110 bits (277), Expect = 7e-31
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 31/173 (17%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCGKI 62
           +KLV++G GG GK+    + + G F   Y+PTI           G     LD        
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCL-LDIL------ 53

Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPI 120
                DTAGQE+F  +RD Y   G+  ++++ +T R +++ +  +   + RV   +++PI
Sbjct: 54  -----DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI 108

Query: 121 VLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           VL GNK D+++ R V   + K++   R+    + E SAK   N ++ F  L R
Sbjct: 109 VLVGNKCDLESERVVSTEEGKELA--RQWGCPFLETSAKERVNVDEAFYDLVR 159

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  109 bits (275), Expect = 1e-30
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 31/175 (17%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCG 60
             +KLV++G GG GK+    + + G F  +Y+PTI           G     LD      
Sbjct: 1   REYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCL-LDIL---- 55

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 118
                  DTAGQE+F  +RD Y   G+  ++++ +T R +++ +  +   + RV   +++
Sbjct: 56  -------DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDV 108

Query: 119 PIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           PIVL GNK D++N R V   + K++   R+    + E SAK   N ++ F  L R
Sbjct: 109 PIVLVGNKCDLENERVVSTEEGKELA--RQWGCPFLETSAKERINVDEAFYDLVR 161

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  109 bits (274), Expect = 1e-30
 Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT  V+R  +G F ++   TIGV+           +++   WDTAGQE
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR 132
           +F  +   YY     AII +D+T R ++++VP W  ++ +    N+ ++L GNK D++ +
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 133 QVKAKQVTFHRKKNLQYY-------EISAKSNYNFEKPFLYLARKL 171
               ++V F     L  +       E SAK + N E+ FL +A +L
Sbjct: 124 ----REVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  109 bits (275), Expect = 3e-30
 Identities = 63/171 (36%), Positives = 93/171 (54%), Gaps = 16/171 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE----VHPLDFFTNCGKIRFYCWDT 69
           FK++++GD G GKT+ +KR++ G F + Y+ TIGV+    V   D  T     R   WD 
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVV---RLQLWDI 57

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVC----ENIPIVLCG 124
           AGQE+FGG+   YY     AII+FDVT   T++ V  W  DL  +V     E IP +L  
Sbjct: 58  AGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLA 117

Query: 125 NKVDVKNRQVKAKQVTFHR--KKN--LQYYEISAKSNYNFEKPFLYLARKL 171
           NK D+K  ++        +  K+N  + ++E SAK N N E+   +L + +
Sbjct: 118 NKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNI 168

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  108 bits (272), Expect = 3e-30
 Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 13/167 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---NCG--KIRFYCWD 68
           FK+V++G+G  GKT+ V R++  +F +K+E T         FF    N G  +I    WD
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQAS-----FFQKTVNIGGKRIDLAIWD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127
           TAGQE++  L   YY     AI+++D+T   +++ V  W ++L ++   NI +V+ GNK+
Sbjct: 56  TAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKI 115

Query: 128 D-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
           D  + R V   +   + +    +++E SAK+    E+ FL LA+++ 
Sbjct: 116 DLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  107 bits (269), Expect = 1e-29
 Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 18/170 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K++I+GD G GKT+ + +++  +F  +Y+ TIG      DF T     +   +    WD
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTKEVTVDDRLVTLQIWD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLC 123
           TAGQE+F  L   +Y    C ++++DVT   +++++ +W  +          EN P V+ 
Sbjct: 56  TAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVL 115

Query: 124 GNKVDV-KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           GNK+D+ + RQV  K+       K N+ Y+E SAK   N ++ F  +AR 
Sbjct: 116 GNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARL 165

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  103 bits (258), Expect = 4e-28
 Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 11/163 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     F   +  TIG++        +  KI+   WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++D+T   +++N+  W R++     E++  +L GNK D++ +
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEK 123

Query: 133 QVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLAR 169
               + V+    + L      ++ E SAK+N N E+ FL LA+
Sbjct: 124 ----RVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAK 162

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  102 bits (257), Expect = 6e-28
 Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
            F  +   YY     A++++D+T R T+ ++ +W  D  R     N+ I+L GNK D+++
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED-ARQHSNSNMTIMLIGNKCDLES 123

Query: 132 RQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R+  + +    F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 124 RREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  102 bits (255), Expect = 1e-27
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 15/167 (8%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-----RFYC 66
           P++KLV+VG GG GK+    + +   F   Y+PTI       D +T   +I     R   
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE------DSYTKQCEIDGQWARLDI 54

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE+F  +R+ Y   G+  +++F VT R +++ V  +H  + RV   +  P++L G
Sbjct: 55  LDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVG 114

Query: 125 NKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           NK D+++++  +++      R+  + Y E SAK   N +K F  L R
Sbjct: 115 NKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  101 bits (253), Expect = 3e-27
 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 27/173 (15%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR---------- 63
           FKL+++GD G GK+  + R     + + Y  TIGV     DF     KIR          
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DF-----KIRTIELDGKTVK 52

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVL 122
              WDTAGQE+F  +   YY      II++DVT + ++ NV  W +++ R   EN+  +L
Sbjct: 53  LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 112

Query: 123 CGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            GNK D+ +++V    +AK+  F  +  + + E SAK+  N E+ F+ +AR++
Sbjct: 113 VGNKCDLTDKKVVDYTEAKE--FADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  100 bits (251), Expect = 4e-27
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 5/162 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+G  GTGK+  + + +  +F++    TIGVE            ++   WDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVK- 130
           +F  +   YY     A++++D+T+R ++  +  W  D  R     +I I+L GNK D++ 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTD-ARTLASPDIVIILVGNKKDLED 119

Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +R+V   +   F ++  L + E SA +  N E+ FL  AR +
Sbjct: 120 DREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 98.4 bits (245), Expect = 4e-26
 Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +    +F      TIGVE        N  KI+   WDTAGQE
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I L GNK D++  
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 132 RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 123 RDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 98.3 bits (245), Expect = 4e-26
 Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 14/162 (8%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH----------PLDFFTNCGKIRF 64
           KL+ +GD G GKTTF+ R+   +F  K+  T+G++            P        ++  
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVL 122
             WDTAGQE+F  L   ++      ++MFD+T+  ++ NV  W   L     CEN  IVL
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125

Query: 123 CGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 162
            GNK D+ + R+V  +Q      K  + Y+E SA +  N EK
Sbjct: 126 IGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 97.1 bits (242), Expect = 7e-26
 Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 14/164 (8%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEF---EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           V+VG GG GK++ +   L GE          T   +V+  +      K+     DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVL--VDTPGLD 58

Query: 74  KFGGLRDGYYIHG-----QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
           +FGGL                +++ D T R + ++            E IPI+L GNK+D
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDA-KLLILRRLRKEGIPIILVGNKID 117

Query: 129 -VKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLAR 169
            ++ R+V+         K   +  +E+SAK+    ++ F  L  
Sbjct: 118 LLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 96.9 bits (241), Expect = 9e-26
 Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 1/150 (0%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K++++GD   GK+  V+R L   +E +   T  + ++  +       I    WDTAGQE+
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134
           F  +   YY      I++FDVT ++TYKN+  W+ +L      IP ++  NK+D+    V
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-V 120

Query: 135 KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
             K+  F  K NL  Y +SA    N  K F
Sbjct: 121 TQKKFNFAEKHNLPLYYVSAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 97.3 bits (242), Expect = 1e-25
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 6   LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK+D
Sbjct: 66  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 125

Query: 129 VKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           +  RQV  +  Q       +  Y+E SAK   N    F    R+
Sbjct: 126 IPERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 169

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 96.5 bits (240), Expect = 2e-25
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++G+ G GKT  V+R   G F      TIGV+           KI+   WDTAGQE
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNR 132
           +F  +   YY      I+ +D+T   +++ +P W R++ +   N +  +L GNK+D+  R
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127

Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +  ++Q    F   +++ Y E SAK + N EK FL LA +L
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 96.5 bits (240), Expect = 4e-25
 Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 7/170 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+I+GD G GK++ + R     F   Y  TIGV+        N  +++   WDTAGQE
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +F  +   YY      I+++DVT   ++ NV  W +++ + C+++  VL GNK D   R+
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK 126

Query: 134 V--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF-----LYLARKLAGDPN 176
           V        F  +  +  +E SAK N N E+ F     L L  K      
Sbjct: 127 VVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAK 176

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 96.5 bits (240), Expect = 6e-25
 Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 9/192 (4%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MA       DY  FK+V++GD G GK+  + R    EF  + + TIGVE           
Sbjct: 1   MAHRVDHEYDY-LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK 59

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIP 119
            ++   WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L    + NI 
Sbjct: 60  TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV 119

Query: 120 IVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 177
           I++ GNK D+ + R V  +       K+ L + E SA    N EK F  +  ++      
Sbjct: 120 IMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEI-----Y 174

Query: 178 HFVESPALAPPE 189
           H +   ALA  E
Sbjct: 175 HIISKKALAAQE 186

Length = 216

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 94.4 bits (235), Expect = 8e-25
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 24/171 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
           +KLV+VG GG GK+    + +   F  +Y+PTI            E   LD         
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDIL------- 54

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
               DTAGQE++  +RD Y   G+  + +F + +R +++++ T+   + RV   +++P+V
Sbjct: 55  ----DTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV 110

Query: 122 LCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D+  R V  +Q     +   + Y E SAK+    E+ F  L R++
Sbjct: 111 LVGNKCDLAARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 93.8 bits (234), Expect = 2e-24
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGDG  GKT  +  + T +F  +Y PT+  + +  +   +  ++    WDTAGQE+
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD----- 128
           +  LR   Y      ++ F V +  +++NV T W+ ++   C N+PI+L G K+D     
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDG 120

Query: 129 --VKNRQVKAKQVTF-------HRKKNLQYYEISAKSNYNFEKPFLYLAR 169
             +K  + K K +T             ++Y E SA +    ++ F    R
Sbjct: 121 NTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 94.7 bits (235), Expect = 3e-24
 Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 6/170 (3%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK++++GD G GK++ +   ++   E    PTIGV+           +++   WDTAGQ
Sbjct: 14  SFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ 72

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIV--LCGNKVDV 129
           E+F  L   YY + Q  I+++DVT R T+ N+   W +++     N   V  L GNKVD 
Sbjct: 73  ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132

Query: 130 KNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 177
           ++ +  +++  +   ++    + E SAK+  N E+ F  LA K+   P+L
Sbjct: 133 ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSL 182

Length = 211

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 93.0 bits (231), Expect = 3e-24
 Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 17/168 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEVHPLDFFTNCGKIRFYCW 67
           +KLV++G GG GK+    + + G F +KY+PTI       VEV       +  +      
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-------DGQQCMLEIL 54

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
           DTAG E+F  +RD Y  +GQ  ++++ +TA+ T+ ++      + RV   E++P++L GN
Sbjct: 55  DTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114

Query: 126 KVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D+++ +V  K+      R+    + E SAK+  N  + F  L R++
Sbjct: 115 KCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 94.1 bits (234), Expect = 5e-24
 Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 15/169 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC------GKIRFYCW 67
           F+L+++GD   GK++ +KR   G F +  +PT+GV     DFF+         +I+   W
Sbjct: 3   FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGV-----DFFSRLIEIEPGVRIKLQLW 57

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGN 125
           DTAGQE+F  +   YY +    +++FD+T R ++++V  W  +            +L G+
Sbjct: 58  DTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGH 117

Query: 126 KVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
           K D+++ RQV + +     +   ++Y E SA++  N E+ F  L +++ 
Sbjct: 118 KCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIY 166

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 92.4 bits (230), Expect = 1e-23
 Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 18/170 (10%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF-YCWDTA 70
              K+V+VGDGG GKT  +  +  G F ++Y PT+  E +        GKI     WDTA
Sbjct: 2   LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDTA 60

Query: 71  GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDV 129
           GQE +  LR   Y      +I + V    +  NV   W+ ++   C   PIVL G K D+
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDL 120

Query: 130 ---KNRQVKAKQ-----VTFHRKKNL-------QYYEISAKSNYNFEKPF 164
              KN   K +      VT  + +++        Y E SAK   N ++ F
Sbjct: 121 RKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 91.3 bits (227), Expect = 2e-23
 Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 10/167 (5%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT    R   G F ++ E TIGV+        +  +I+   WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 74  KF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDV 129
           +F   +   YY +    + ++DVT   ++ ++P+W  + C    +   +P +L GNK D+
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEE-CEQHSLPNEVPRILVGNKCDL 121

Query: 130 K-NRQVKAKQVT-FHRKKNLQYYEISAK---SNYNFEKPFLYLARKL 171
           +   QV       F    ++  +E SAK    N + E  F+ LA KL
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 90.7 bits (225), Expect = 3e-23
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 25/172 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEV----HPLDFFTNCGKIR 63
           +K+V++G GG GK+    + ++G F +KY+PTI       +EV      L+         
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEIL------- 54

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
               DTAG E+F  +RD Y  +GQ  I+++ +  + T++++      + RV   E +PI+
Sbjct: 55  ----DTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII 110

Query: 122 LCGNKVDVK-NRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNKVD++  R+V  A+      +    + E SAKS     + F  + R++
Sbjct: 111 LVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 89.7 bits (222), Expect = 7e-23
 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           F+L+++GD G GKT  + R    EF   +  TIGV+        +  K+R   WDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KN 131
           ++  +   YY   Q   +++D+++  +Y+++  W  D+     E +  +L GNK D  + 
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 132 RQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLA 168
           RQV  +Q     K+    ++E SA +N N ++ F  L 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 88.8 bits (220), Expect = 5e-22
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126

Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +  + +    F ++  L + E SAK+  N E+ F+  A K+
Sbjct: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167

Length = 210

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 87.6 bits (217), Expect = 7e-22
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 13/167 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V++GDG  GKT+ +     G F + YEPT+  E +  D F +   +    WDTAGQE+
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK--- 130
           F  LR   Y      ++ F V    + +NV + W  ++   C  + +VL   K D++   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPR 120

Query: 131 NRQVKAKQVTFH--------RKKNLQYYEISAKSNYNFEKPFLYLAR 169
           N + +      +        R    +Y E SAK N    + F   AR
Sbjct: 121 NERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 87.1 bits (216), Expect = 7e-22
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 11/165 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VEVHPLDFFTNCGKIRFYCWDTA 70
            K+++VG GG GK+    + +  EF + YEPT      +   LD      +++    DTA
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD----GEEVQLNILDTA 56

Query: 71  GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD 128
           GQE +  +RD Y+  G+  +++F +T   ++  +  +   + RV   +N+P++L GNK D
Sbjct: 57  GQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCD 116

Query: 129 -VKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               RQV   +      +  + Y E SAK+  N +K F  L R++
Sbjct: 117 LEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 86.7 bits (215), Expect = 8e-22
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 5/156 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            K+VIVGD   GK+T + R L  +    +Y+P             +    +F   DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV 129
           E +  +R  YY   + ++ +FD+   +    + +    +++    E  +PI+L GNK+D+
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 130 KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPF 164
           ++ ++K      F +        +SA++  N +  F
Sbjct: 122 RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 87.6 bits (217), Expect = 8e-22
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           FK+++VGD G GKT  + R   G F    +  T+G++        +  K++   WDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK- 130
           E+F  +   YY      ++++DVT + ++ N+  W  ++      ++ I+L GNK D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 131 NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            R VK +      ++  + + E SAK+  N E  F  +A++L
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 86.1 bits (213), Expect = 2e-21
 Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 11/158 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR 132
           ++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ 
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 133 QVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPF 164
           +V    V+  R + L      +++E SAK N N ++ F
Sbjct: 122 RV----VSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 86.1 bits (213), Expect = 2e-21
 Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 16/168 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF-----TNCGKIRFYCWD 68
           +KLV++G GG GK+    + + G F  KY+PTI       D +      +C +      D
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE------DSYRKQIEVDCQQCMLEILD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAG E+F  +RD Y  +GQ   +++ +TA+ ++ ++      + RV   E++P++L GNK
Sbjct: 56  TAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNK 115

Query: 127 VDVKNRQVKAKQ--VTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+++ +V +K+      R+  N  + E SAKS  N ++ F  L R++
Sbjct: 116 CDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 85.0 bits (211), Expect = 6e-21
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 17/160 (10%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           LV+VGDG  GKT  +  + T  F + Y PT+  E +  D   +   +    WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 76  GGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDV----- 129
             LR   Y      +I F V +  +++NV   W+ ++   C N+PI+L G K+D+     
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKS 119

Query: 130 ---KNRQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
              +  + K + VT+ + + L       +Y E SA +   
Sbjct: 120 TLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEG 159

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 83.9 bits (208), Expect = 1e-20
 Identities = 46/167 (27%), Positives = 88/167 (52%), Gaps = 12/167 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQ 72
           K++ +G+ G GK+  +KR+  G F  KY PTIG++  V  +    N  ++R   +D +G 
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVS-VRNK-EVRVNFFDLSGH 59

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL------CRVCENIPIVLCGNK 126
            ++  +R+ +Y   Q  ++++DVT R +++ + +W +++          ENI +V+C NK
Sbjct: 60  PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK 119

Query: 127 VD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +D  K+R V   +   +   K  +Y+E SA +     + F  L   +
Sbjct: 120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 83.8 bits (207), Expect = 2e-20
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 25/172 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
           +KLV+VG GG GK+    + +   F  +Y+PTI            E   LD         
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDIL------- 58

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIV 121
               DTAGQE++  +RD Y   GQ  + ++ +T+R +++ + ++   + RV +   +P++
Sbjct: 59  ----DTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMI 114

Query: 122 LCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D+ + RQV   +     +   + + E SAK   N ++ F  L R++
Sbjct: 115 LVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 83.1 bits (205), Expect = 5e-20
 Identities = 47/157 (29%), Positives = 88/157 (56%), Gaps = 4/157 (2%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           +++I+G  G GKT+ ++R     F +  + T+GV+           KIR   WDTAGQE+
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NR 132
           F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + +R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYL 167
           ++  +Q      +   +++ E SAK N+N ++ FL L
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 82.2 bits (203), Expect = 1e-19
 Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 23/175 (13%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF--------Y 65
            K+V++GDG +GKT+ ++R     F K Y+ TIG+     DFF+   +I           
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGL-----DFFSR--RITLPGSLNVTLQ 53

Query: 66  CWDTAGQEKFGGLRDGYYIHG-QCAIIMFDVTARLTYKNVPTWHRDLCRVCEN----IPI 120
            WD  GQ+  G + D  YI+G Q   +++D+T   +++N+  W   + +V E       +
Sbjct: 54  VWDIGGQQIGGKMLDK-YIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKM 112

Query: 121 VLCGNKVDV-KNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
           VL GNK D+  NRQV A K   F ++ +++   +SAK+       F  +A +L G
Sbjct: 113 VLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLG 167

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 81.0 bits (200), Expect = 3e-19
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 37/178 (20%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---------------VEVHPLDFFTNC 59
           KLV++GDGG GKT    +     F + Y+PTI                +EV         
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEV--------- 51

Query: 60  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-- 117
                   DTAGQE++  LRD +   G+  I+++ +T+R T++ V  +   + RV +   
Sbjct: 52  -------LDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESA 104

Query: 118 --IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             +PI++ GNK D    +  + +      R+   ++ E SAK+N N E+ F  L R L
Sbjct: 105 ADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 80.2 bits (198), Expect = 3e-19
 Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 18/169 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEVHPLDFFTNCGKIRFYCW 67
           +K+V++G GG GK+    + +   F + Y+PTI       VE+                 
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEI-------L 54

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
           DTAG E+F  +R+ Y   GQ  ++++ VT+  +   +      + R+   +N+P+VL GN
Sbjct: 55  DTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGN 114

Query: 126 KVDVKN-RQV-KAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D+++ RQV +   V+  ++  N+ +YE SA+   N ++ F+ L R++
Sbjct: 115 KADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 79.4 bits (195), Expect = 9e-19
 Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 6/143 (4%)

Query: 38  FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 97
           F+  Y+ TIG++      + + G +R   WDTAGQE+F  L   Y      AI+++D+T 
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Query: 98  RLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISA 154
           R +++N   W +D L    +++ I L GNK D+ + R+V  ++ +   ++ N  ++E SA
Sbjct: 65  RQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSA 124

Query: 155 KSNYNFEKPFLYLARKLAGDPNL 177
           K+ +N +  F  +A KL   PNL
Sbjct: 125 KAGHNIKVLFKKIAAKL---PNL 144

Length = 176

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 78.0 bits (192), Expect = 2e-18
 Identities = 51/168 (30%), Positives = 81/168 (48%), Gaps = 18/168 (10%)

Query: 15  KLVIVGDGGTGKTTFVKR-HLTG-EFEKKYEPTIGVEVH----PLDFFTNCGKIRFYCWD 68
           +  +VGD   GK+  V+  H  G  F+K Y  T G ++     P+   ++   +  + +D
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSD--SVELFIFD 59

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-----IPIVLC 123
           +AGQE F  + +  +       +++DVT  +++ N   W   + RV  +      P VL 
Sbjct: 60  SAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRW---INRVRTHSHGLHTPGVLV 116

Query: 124 GNKVD-VKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           GNK D    R+V A Q     +   L++YE SAK    +E PFL LAR
Sbjct: 117 GNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 79.4 bits (196), Expect = 3e-18
 Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 44/195 (22%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW-----D 68
           +++V++G    GKT  V R L G FE++Y PTI       DF      IR   +     D
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE------DFHRKLYSIRGEVYQLDILD 54

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI---------- 118
           T+G   F  +R    + G   I++F +  R +++ V       CR+ E I          
Sbjct: 55  TSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEV-------CRLREQILETKSCLKNK 107

Query: 119 -------PIVLCGNKVDVK-NRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLA 168
                  P+V+CGNK D    R+V+  +V       +N  Y+E+SAK N N ++ F  L 
Sbjct: 108 TKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167

Query: 169 RKLAG-----DPNLH 178
             LA       P+LH
Sbjct: 168 -SLAKLPNEMSPSLH 181

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 78.0 bits (192), Expect = 3e-18
 Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 15/169 (8%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT+ +     GEF ++Y PT+  E +  D   +   ++   WDTAGQE+
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV-FENYVTDCRVDGKPVQLALWDTAGQEE 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDV---- 129
           +  LR   Y      +I F +    + +NV T W  ++ R C N+P++L G K D+    
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEA 121

Query: 130 --KNRQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
             K      + V   + K +       +Y E SA +    +  F    R
Sbjct: 122 VAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATR 170

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 77.4 bits (190), Expect = 7e-18
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K V+VGDG  GKT  +  + T  F K+Y PT+  + +      +   +    WDTAGQ
Sbjct: 3   SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131
           E++  LR   Y      II F + +  +Y+NV   WH ++C  C N+PI+L G K D++N
Sbjct: 62  EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 76.5 bits (188), Expect = 8e-18
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VGD   GKT  + R     F+K Y+ TIGV+     F           WDTAGQE+
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP----IVLCGNKVDVK 130
           F  +   YY   Q  II+FD+T   + ++   W  D  +  EN P    + L G K D+ 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALK--ENDPSSVLLFLVGTKKDLS 119

Query: 131 N----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 176
           +      ++   +   R+   +Y+ +SA +  N  + F +    L  +  
Sbjct: 120 SPAQYALMEQDAIKLAREMKAEYWAVSALTGENV-RDFFFRVASLTFELG 168

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 77.2 bits (190), Expect = 9e-18
 Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 16/188 (8%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           +LV +G  G GKT  ++R L   FE K+  T+  E+H  ++     K+     DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVD-VKN 131
           F  +R     +G    +++ V    +++ V     ++  V E+  +PIV+ GNK+D +  
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL---- 185
           RQV+A     T     N  + E SAK N N  + F    ++L    NL    SPAL    
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVF----KELLQQANLPSWLSPALRRRR 175

Query: 186 --APPEVQ 191
             AP E+Q
Sbjct: 176 ESAPSEIQ 183

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 7/178 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K ++VGD   GK   +     G  E  Y   +G++        +  +++   WDT+GQ 
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NR 132
           +F  +   Y    Q  I+++D+T R ++  +  W +++      +P +L GN++ +   R
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR 126

Query: 133 QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189
           QV  +Q   +  +  + ++E+S   N+N  + F  LAR +     L     P  +PP+
Sbjct: 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIV-----LMRHGRPPQSPPQ 179

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 74.9 bits (184), Expect = 3e-17
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 25/173 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
           +K+V++G GG GK+    + ++  F   ++PTI            E   LD         
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDIL------- 55

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
               DTAGQ +F  +RD Y   G+  II + VT R +++    +   + RV   E+IP+V
Sbjct: 56  ----DTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLV 111

Query: 122 LCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
           L GNKVD++  RQV  ++     R+ N  ++E SA   +  +  F  L R++ 
Sbjct: 112 LVGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIR 164

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 74.1 bits (182), Expect = 1e-16
 Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 16/193 (8%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           K+V++G    GKT+ V+R++   F    Y+ TIG              +    WDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           ++  +   YY   + AI+ +D+T   +++    W ++L  + E+  I LCG K D+  + 
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQD 121

Query: 134 VKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE-SPALA 186
              +QV FH  ++       Q++E S+K+  N ++ F    +K+A D    FV  +    
Sbjct: 122 RSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF----QKVAED----FVSRANNQM 173

Query: 187 PPEVQIDLAAQQQ 199
             E  +DL  ++ 
Sbjct: 174 NTEKGVDLGQKKN 186

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 17/159 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-- 131
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N  
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121

Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSN 157
                  ++K + V     + +        Y E SAK+ 
Sbjct: 122 HTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTK 160

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V++GD G+GK++ + + + GEF  +     G  +       +        WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 75  FGGLRDGYYIHGQC--AIIMFDVTARLTYKNVP---TWHRDLCRVCENIPIVLCGNK 126
                +           ++++D+T R +   V     W  +L ++   IP++L GNK
Sbjct: 61  L--KFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 69.5 bits (170), Expect = 4e-15
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAG 71
           +++V+ G GG GK++ V R + G F + Y PTI      +    +C K        DT G
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV---ISCSKSICTLQITDTTG 58

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNKV 127
             +F  ++      G   I+++ +T++ + + +   +  +C       E IPI+L GNK 
Sbjct: 59  SHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKC 118

Query: 128 D-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 164
           D   +R+V + +     R  N  + E SAK+N+N ++ F
Sbjct: 119 DESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 21/162 (12%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG------VEVHPLDFFTNCGKIRFYCWD 68
           K+ ++G    GK++   + + G F + Y PTI       +     ++  +   +     D
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEY--HLEIV-----D 55

Query: 69  TAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCG 124
           TAGQ+++  L   Y   IHG   I+++ VT+R +++ V   +  +  +   E++PIVL G
Sbjct: 56  TAGQDEYSILPQKYSIGIHG--YILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVG 113

Query: 125 NKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 164
           NK D+   RQV A++           + E SAK N N E+ F
Sbjct: 114 NKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 2/146 (1%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 1   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 59

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 60  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119

Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSN 157
            +   +++   +   + Y +  A + 
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAK 145

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  ++      F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           +  +R   Y      +I FD++   T  +V   W  ++   C N P++L G K D++ 
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRT 119

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 27/171 (15%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDT 69
           K V+VGDG  GKT+ +  + T  +  +Y PT        D F+     +   +R    DT
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT------AFDNFSVVVLVDGKPVRLQLCDT 55

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 128
           AGQ++F  LR   Y      ++ F V    +++N+   W  ++ +     PI+L G + D
Sbjct: 56  AGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQAD 115

Query: 129 --------VKNRQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                   ++  +   K V+  R K L       +Y E SA +  N ++ F
Sbjct: 116 LRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 22/130 (16%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT----------IGVEVHPLDFFTNCGKI 62
           + K V+VGDG  GKT  +  + T +F  +Y PT          IG E + L  F      
Sbjct: 1   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF------ 54

Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIV 121
                DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +
Sbjct: 55  -----DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL 109

Query: 122 LCGNKVDVKN 131
           L G ++D+++
Sbjct: 110 LVGTQIDLRD 119

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDT 69
           K V VGDG  GKT  +  + +  F   Y PT+       D F+     +   +    WDT
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV------FDNFSANVVVDGNTVNLGLWDT 56

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVD 128
           AGQE +  LR   Y      ++ F + ++ +Y+NV   W  +L      +PIVL G K+D
Sbjct: 57  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLD 116

Query: 129 VKN 131
           +++
Sbjct: 117 LRD 119

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 61.1 bits (149), Expect = 4e-12
 Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 18/163 (11%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           +++++G  G GKTT + +   GE      PTIG  V  +++      ++F  WD  GQ+K
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTI-PTIGFNVETVEY----KNVKFTVWDVGGQDK 55

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
              L   YY +    I + D + R   + +     +L ++         P+++  NK D+
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDR---ERIEEAKNELHKLLNEEELKGAPLLILANKQDL 112

Query: 130 KNRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
                +++      +   + +       SA +    ++   +L
Sbjct: 113 PGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWL 155

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 3/151 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQE 73
           KL++VG GG GKT+  K+ +  +F+     T G+ V           KIR   WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--N 131
            +      +       +++FD+        VP W R +       P++L G  +D     
Sbjct: 63  IYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVILVGTHIDESCDE 122

Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
             +K              + +S K+     +
Sbjct: 123 DILKKALNKKFPAIINDIHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 59.3 bits (143), Expect = 3e-11
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 2/152 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 125

Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165
               +++ HR+  + Y + +  +       ++
Sbjct: 126 STLVELSNHRQTPVSYDQGANMAKQIGAATYI 157

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 58.6 bits (142), Expect = 6e-11
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+ ++GD   GKT+ + +++ GEF+++Y  T+GV            +I F  WD  GQ +
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 75  FGGLRDGYYI--HGQCAII-MFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVD 128
           F    +   +      AI+ MFD+T + T  ++  W+R   R      IPI L G K D
Sbjct: 62  F---INMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQ-ARGFNKTAIPI-LVGTKYD 115

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 58.0 bits (140), Expect = 2e-10
 Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 45/193 (23%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V++GD   GKT+ + R++   F K    T+G       +    G      WDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAF----YLKQWGPYNISIWDTAGREQ 56

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC---RVCENIPIVLCGNKVDVKN 131
           F GL   Y       I+ +DV+   + + +    R L       E+    + GNK+D+  
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEEL--EDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 132 RQVKA---------------KQVTFH----------RKKNLQ----------YYEISAKS 156
               A               +QVT            + K L            +E SAK+
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174

Query: 157 NYNFEKPFLYLAR 169
            YN ++ F YL  
Sbjct: 175 GYNVDELFEYLFN 187

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 17/154 (11%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           + +VG   +GKTT V    +G+F +   PT+G  +  +      G +    WD  GQ +F
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKV----TKGNVTIKVWDLGGQPRF 57

Query: 76  GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVK 130
             + + Y       + + D   R     +     +L  + E      IP+++ GNK D+ 
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADRE---KLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114

Query: 131 NRQVKAKQVTFHRKKNLQ-----YYEISAKSNYN 159
                 + +     K++       Y ISAK   N
Sbjct: 115 GALSVDELIEQMNLKSITDREVSCYSISAKEKTN 148

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 38/167 (22%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG--------VEVHPLDFFTNCGKIRFYC 66
           K+ ++G  G GK+    R LT  F  +YEP +         ++   +       +I    
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSL-----EI---- 51

Query: 67  WDTAGQEKFGG-------LR--DGYYIHGQCAIIMFDVTARLTYKNVPTWH---RDLCRV 114
            DT GQ++          LR  DG+       ++++ +T R ++  V       R++ + 
Sbjct: 52  QDTPGQQQNEDPESLERSLRWADGF-------VLVYSITDRSSFDVVSQLLQLIREIKKR 104

Query: 115 CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYN 159
              IP++L GNK D+ + RQV   +      +    ++E+SA  NY 
Sbjct: 105 DGEIPVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYL 151

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 56.2 bits (135), Expect = 3e-10
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 12/124 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---NCGKIRFY--CWD 68
            K V+VGDG  GKT  +  +    F ++Y PT+       D +      G  ++    +D
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV------FDHYAVSVTVGGKQYLLGLYD 54

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKV 127
           TAGQE +  LR   Y      +I F V    +++NV   W  +L     N+P +L G ++
Sbjct: 55  TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQI 114

Query: 128 DVKN 131
           D+++
Sbjct: 115 DLRD 118

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 25/128 (19%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +K++IVG    GKTT + + L GE      PTIG  V  + +      IRF  WD  GQE
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIGSNVEEIVY----KNIRFLMWDIGGQE 70

Query: 74  KFGGLRDG---YYIHGQCAIIMFDVT--ARLT------YKNVPTWHRDLCRVCENIPIVL 122
               LR     YY +    I++ D T   RL       YK +   H DL        +++
Sbjct: 71  S---LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLA--HEDL----RKAVLLV 121

Query: 123 CGNKVDVK 130
             NK D+K
Sbjct: 122 LANKQDLK 129

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 51.2 bits (122), Expect = 4e-08
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       + + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 130
           +  +R   Y      +I FD++   T  +V   W  +    C N  +VL G K+D++
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMR 118

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 25/131 (19%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEFEKKYE--------PTIGVEVHPLDFFTNCGKIRFYCWD 68
           +I+G    GKTTF+++  T +F K Y+        PT+G+ +  ++     GK R   WD
Sbjct: 3   LILGLDNAGKTTFLEQTKT-KFSKNYKGLNPSKITPTVGLNIGTIEV----GKARLMFWD 57

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVT--ARL-----TYKNVPTWHRDLCRVCENIPIV 121
             GQE+   L D YY      I + D T   R       ++ V   +  L    E +P++
Sbjct: 58  LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVIN-NEAL----EGVPLL 112

Query: 122 LCGNKVDVKNR 132
           +  NK D+ + 
Sbjct: 113 VLANKQDLPDA 123

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 30/163 (18%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YEPTIGVEVHPLDFFTNCGKIRF 64
           +++V++GD G GK++       G +E           YE T+ V+            +  
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEAT-------LVV 53

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
           Y  D   QE    L D     G   +I++ VT R +++        L   R  E+IPI+L
Sbjct: 54  Y--DHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIIL 111

Query: 123 CGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYN 159
            GNK D V++R+V     +A  V F    + ++ E SA   +N
Sbjct: 112 VGNKSDLVRSREVSVQEGRACAVVF----DCKFIETSAALQHN 150

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 44.5 bits (106), Expect = 5e-06
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 13/124 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             +++I+G    GKTT + +   GE      PTIG  V  + +      ++F  WD  GQ
Sbjct: 14  EMRILILGLDNAGKTTILYKLKLGEI-VTTIPTIGFNVETVTY----KNVKFTVWDVGGQ 68

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKV 127
           E    L   Y+ +    I + D   R     +     +L  +       + P+++  NK 
Sbjct: 69  ESLRPLWRNYFPNTDAVIFVVDSADR---DRIEEAKEELHALLNEEELADAPLLILANKQ 125

Query: 128 DVKN 131
           D+  
Sbjct: 126 DLPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 25/166 (15%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD----- 68
            ++ ++G  G GKT  V++ L  EF ++Y PT    ++      +      +  D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 69  ----TAGQE----KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCEN- 117
               TAGQE    +F GLR+      +  I+++D+ +  ++  V    + +   R   N 
Sbjct: 61  RYPGTAGQEWMDPRFRGLRN-----SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 118 -IPIVLCGNKVDVKNRQVKAKQVTFH---RKKNLQYYEISAKSNYN 159
             PIV+ GNK D +  +   + V      +     Y E SAK N++
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWH 161

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      ++ FD++    + + +  W  ++   C +  I+L G K D++   
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDL 133

Query: 134 VKAKQVTFHRKKNLQYYEISA 154
               +++  ++  + Y +  A
Sbjct: 134 STLMELSNQKQAPISYEQGCA 154

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++V +G  G GKTT + +    EF +   PTIG  V  +++      ++F  WD  G+ K
Sbjct: 1  RVVTLGLDGAGKTTILFKLKQDEFMQPI-PTIGFNVETVEY----KNLKFTIWDVGGKHK 55

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   YY++ Q  + + D + R
Sbjct: 56 LRPLWKHYYLNTQAVVFVIDSSHR 79

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 15/130 (11%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++G   +GKTT +   L     +     PT+G     ++ F   G + F  +D +GQ 
Sbjct: 2   ILVLGLDNSGKTTIIN-QLKPSNAQSQNIVPTVG---FNVESFKK-GNLSFTAFDMSGQG 56

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW------HRDLCRVCENIPIVLCGNKV 127
           K+ GL + YY + Q  I + D + RL              H D+      IPI+   NK+
Sbjct: 57  KYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKH--RRIPILFYANKM 114

Query: 128 DVKNRQVKAK 137
           D+ +     K
Sbjct: 115 DLPDALTAVK 124

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 30/173 (17%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----TIGVEVHPLDFFTNCGKIRFYCWDT 69
           ++V++GD G GK++ +   ++ EF +         TI  +V P    T    I     DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPT---TIV----DT 56

Query: 70  AGQEKFGGLRDGYY--IHGQCAI-IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 125
           + + +    R      I     I +++ V    T + + T W   + R+   +PI+L GN
Sbjct: 57  SSRPQ---DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGN 113

Query: 126 KVDV--KNRQVKAKQV------TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           K D+   + Q   ++        F  ++     E SAK+  N  + F Y A+K
Sbjct: 114 KSDLRDGSSQAGLEEEMLPIMNEF--REIETCVECSAKTLINVSEVF-YYAQK 163

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 46/155 (29%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--------------------PLD 54
           ++++VGD G GK++ V   + G    +   TIG  V                       D
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 55  FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114
           FF          WD +G E++   R  +Y      I + D++ R T  ++  W  +   V
Sbjct: 83  FFVE-------LWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASE---V 132

Query: 115 CEN----------------IPIVLCGNKVDVKNRQ 133
                              +P ++ GNK D+  ++
Sbjct: 133 AATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKE 167

Length = 334

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++++VG    GKTT + +   GE      PTIG  V  + +      I F  WD  GQ+K
Sbjct: 15 RILMVGLDAAGKTTILYKLKLGESVTTI-PTIGFNVETVTY----KNISFTVWDVGGQDK 69

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   YY + Q  I + D   R
Sbjct: 70 IRPLWRHYYTNTQGLIFVVDSNDR 93

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+K
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 73

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   Y+ + Q  I + D   R
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97

Length = 181

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 26/170 (15%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VEVHPLDFFTNCGKIRFYCWDTAG 71
           KL IVG+  +GK+  V R+LTG + +   P  G    EV  +D  ++   IR    D  G
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFKKEVL-VDGQSHLLLIR----DEGG 56

Query: 72  QE--KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCG--N 125
               +F G  D         I +F +    +++ V   +  L   R    IP++L G  +
Sbjct: 57  APDAQFAGWVDA-------VIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQD 109

Query: 126 KVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +   N +V    +A+Q+     K   YYE  A    N E+ F   A+K+
Sbjct: 110 AISASNPRVIDDARARQLC-ADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++++VG    GKTT + +   GE      PTIG  V  +++      ++F  WD  GQ+K
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEVVTTI-PTIGFNVETVEY----KNLKFTMWDVGGQDK 73

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   YY +    I + D   R
Sbjct: 74 LRPLWRHYYQNTNGLIFVVDSNDR 97

Length = 182

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+K
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 56

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   Y+ + Q  I + D   R
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDR 80

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.98
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.98
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.98
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.98
PLN03108	210	Rab family protein; Provisional	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.98
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.98
PLN03118	211	Rab family protein; Provisional	99.98
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.98
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.98
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.98
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.98
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.97
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.97
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.97
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.97
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.96
KOG0395	196	consensus Ras-related GTPase [General function pre	99.96
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.94
PTZ00099	176	rab6; Provisional	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.92
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.92
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.92
PRK15494	339	era GTPase Era; Provisional	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
COG1100	219	GTPase SAR1 and related small G proteins [General	99.92
PRK04213	201	GTP-binding protein; Provisional	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
PRK12299	335	obgE GTPase CgtA; Reviewed	99.91
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.91
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.9
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.9
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.9
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.89
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.88
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.88
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.88
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.88
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.88
KOG1673	205	consensus Ras GTPases [General function prediction	99.88
cd00881	189	GTP_translation_factor GTP translation factor fami	99.88
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.88
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.88
PRK12297	424	obgE GTPase CgtA; Reviewed	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.87
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.87
PRK00089	292	era GTPase Era; Reviewed	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.87
PRK12298	390	obgE GTPase CgtA; Reviewed	99.87
PRK12296	500	obgE GTPase CgtA; Reviewed	99.86
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.86
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.86
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.86
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.85
PRK11058	426	GTPase HflX; Provisional	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
COG1159	298	Era GTPase [General function prediction only]	99.85
PRK05433	600	GTP-binding protein LepA; Provisional	99.85
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.85
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
CHL00189	742	infB translation initiation factor 2; Provisional	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.84
PRK05306	787	infB translation initiation factor IF-2; Validated	99.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.83
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.83
PRK12317	425	elongation factor 1-alpha; Reviewed	99.83
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.82
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.82
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.82
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.82
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.81
PRK10218	607	GTP-binding protein; Provisional	99.81
COG0486	454	ThdF Predicted GTPase [General function prediction	99.81
COG1160	444	Predicted GTPases [General function prediction onl	99.8
COG2229	187	Predicted GTPase [General function prediction only	99.8
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.8
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.8
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.8
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.8
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.8
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.78
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.78
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.77
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.77
COG1160	444	Predicted GTPases [General function prediction onl	99.77
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.77
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.76
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.76
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.76
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.76
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.75
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.75
PRK12736	394	elongation factor Tu; Reviewed	99.74
PRK12735	396	elongation factor Tu; Reviewed	99.74
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.74
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.74
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.74
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.73
PRK04004	586	translation initiation factor IF-2; Validated	99.73
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.71
PLN00043	447	elongation factor 1-alpha; Provisional	99.69
CHL00071	409	tufA elongation factor Tu	99.69
COG2262	411	HflX GTPases [General function prediction only]	99.69
COG0218	200	Predicted GTPase [General function prediction only	99.69
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.69
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.69
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.68
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.68
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.68
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.68
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.68
COG1084	346	Predicted GTPase [General function prediction only	99.67
PLN03126	478	Elongation factor Tu; Provisional	99.67
PRK00049	396	elongation factor Tu; Reviewed	99.67
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.66
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.66
PRK13351	687	elongation factor G; Reviewed	99.66
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.65
PLN03127	447	Elongation factor Tu; Provisional	99.65
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.65
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.64
PTZ00141	446	elongation factor 1- alpha; Provisional	99.64
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.63
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.63
COG3596	296	Predicted GTPase [General function prediction only	99.62
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.62
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.62
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.6
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.6
COG1163	365	DRG Predicted GTPase [General function prediction	99.6
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.59
PRK12739	691	elongation factor G; Reviewed	99.58
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.57
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.55
PRK09602	396	translation-associated GTPase; Reviewed	99.53
COG0536	369	Obg Predicted GTPase [General function prediction	99.53
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.53
PRK00007	693	elongation factor G; Reviewed	99.51
PRK12740	668	elongation factor G; Reviewed	99.5
KOG0090	238	consensus Signal recognition particle receptor, be	99.5
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.49
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.47
PRK09866	741	hypothetical protein; Provisional	99.46
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.46
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.45
KOG1145	683	consensus Mitochondrial translation initiation fac	99.44
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.44
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.43
PRK13768	253	GTPase; Provisional	99.42
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.41
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.41
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.41
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.4
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.4
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.39
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.39
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.37
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.37
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.35
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.35
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.34
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.33
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.33
PTZ00416	836	elongation factor 2; Provisional	99.31
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.29
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.28
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.27
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.26
PRK14845	1049	translation initiation factor IF-2; Provisional	99.25
PRK07560	731	elongation factor EF-2; Reviewed	99.23
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.22
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.21
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.21
PTZ00258	390	GTP-binding protein; Provisional	99.21
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.2
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.19
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.17
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.14
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.14
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.13
PRK09601	364	GTP-binding protein YchF; Reviewed	99.11
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.1
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.09
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.09
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.07
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.07
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.06
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.05
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.05
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.04
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.02
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.98
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.97
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.96
KOG0410	410	consensus Predicted GTP binding protein [General f	98.96
PRK12289	352	GTPase RsgA; Reviewed	98.96
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.96
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.95
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.94
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.92
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.86
KOG0460	449	consensus Mitochondrial translation elongation fac	98.86
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.86
PRK00098	298	GTPase RsgA; Reviewed	98.85
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.85
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.83
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.83
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.82
PRK12288	347	GTPase RsgA; Reviewed	98.81
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.8
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.79
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.76
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.73
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.73
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.73
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.72
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.7
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.7
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.69
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.68
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.68
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.66
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.66
KOG2486	320	consensus Predicted GTPase [General function predi	98.65
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.63
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.63
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.63
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.63
COG1161	322	Predicted GTPases [General function prediction onl	98.62
COG0488	530	Uup ATPase components of ABC transporters with dup	98.6
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.6
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.6
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.59
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.59
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.58
COG0488	530	Uup ATPase components of ABC transporters with dup	98.58
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.57
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.56
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.55
KOG1143	591	consensus Predicted translation elongation factor	98.53
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.53
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.52
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.52
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.52
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.51
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.51
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.51
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.51
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.5
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.5
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.5
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.49
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.49
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.48
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.48
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.47
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.47
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.47
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.47
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.47
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.47
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.46
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.46
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.46
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.45
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.45
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.45
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.45
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.45
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.45
PRK12288	347	GTPase RsgA; Reviewed	98.44
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.44
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.44
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.43
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.43
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.43
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.43
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.43
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.42
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.42
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.42
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.42
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.42
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.42
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.41
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.41
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.41
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.41
PRK10416	318	signal recognition particle-docking protein FtsY;	98.41
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.41
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.41
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.41
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.41
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.41
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.41
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.4
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.4
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.4
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.4
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.4
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.39
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.39
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.39
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.39
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.38
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.38
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.38
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.38
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.38
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.38
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.37
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.37
PRK10908	222	cell division protein FtsE; Provisional	98.37
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.37
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.37
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.37
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.36
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.36
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.36
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.36
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.36
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.36
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.36
PRK13796	365	GTPase YqeH; Provisional	98.36
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.36
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.35
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.35
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.35
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.35
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.35
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.34
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.34
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.34
cd03246	173	ABCC_Protease_Secretion This family represents the	98.34
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.34
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.34
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.34
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.34
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.34
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.33
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.33
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.33
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.33
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.33
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.33
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.33
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.32
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.32
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.32
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.32
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.32
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.32
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.32
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.32
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.32
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.32
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.31
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.31
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.31
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.31
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.31
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.31
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.31
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.31
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.31
COG4559	259	ABC-type hemin transport system, ATPase component	98.3
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.3
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.3
PRK14974	336	cell division protein FtsY; Provisional	98.3
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.3
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.3
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.3

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=8e-39  Score=231.18  Aligned_cols=193  Identities=100%  Similarity=1.608  Sum_probs=171.4

Q ss_pred             CCCCCCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc
Q 029077            1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (199)
Q Consensus         1 ~~~~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (199)
                      |.++++++.++..+||+++|+.|||||||+++++.+.+...+.+|.|.++....+..++..+.+.+||++|++.+...+.
T Consensus         1 ~~~~~~~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   80 (219)
T PLN03071          1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (219)
T ss_pred             CCCcccCCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence            77889999999999999999999999999999999999889999999988888777777789999999999999999999


Q ss_pred             ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      .+++.++++|+|||++++.+|+.+..|+..+....++.|+++||||.|+.++....+...+++..++.|+++||++|.|+
T Consensus        81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i  160 (219)
T PLN03071         81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (219)
T ss_pred             HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence            99999999999999999999999999999998887889999999999997665555555777888899999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQID  193 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d  193 (199)
                      +++|.+|++.+.+..+...++.|...++....|
T Consensus       161 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (219)
T PLN03071        161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQID  193 (219)
T ss_pred             HHHHHHHHHHHHcCcchhcccccccCCcccCCC
Confidence            999999999998887777777776655443333

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.3e-39  Score=217.88  Aligned_cols=173  Identities=33%  Similarity=0.572  Sum_probs=159.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+++|++|+|||+|+.||..+.|...+..|.|+++......++++.+.+++|||+|+++|+.....|+++++++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCc-EEEeccCCCCChHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQ-YYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~-~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||+++.+||..+..|+.++.++. .++|.++||||+|+.+. .+.. +...++..++++ ++++||+++.++++.|..
T Consensus        87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~  166 (205)
T KOG0084|consen   87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT  166 (205)
T ss_pred             EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence            9999999999999999999999987 56799999999999874 3443 445899999999 999999999999999999


Q ss_pred             HHHHHhCCCCCceecCC
Q 029077          167 LARKLAGDPNLHFVESP  183 (199)
Q Consensus       167 i~~~~~~~~~~~~~~~p  183 (199)
                      |+..+......+...++
T Consensus       167 la~~lk~~~~~~~~~~~  183 (205)
T KOG0084|consen  167 LAKELKQRKGLHVKWST  183 (205)
T ss_pred             HHHHHHHhcccCCCCCc
Confidence            99999877777666664

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.7e-38  Score=211.46  Aligned_cols=165  Identities=33%  Similarity=0.595  Sum_probs=151.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+++|+.++|||||+-||..+.|.....+|.|..+....+.+++..++|.+|||+|+++|+++..+|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            56799999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-ccc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||+++.+||..++.|+.++.+.. +++-+.+||||+|+.+ +.+ .++...++...++.|+++||++|.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            9999999999999999999999876 4566678999999987 444 445668999999999999999999999999999


Q ss_pred             HHHHhCCC
Q 029077          168 ARKLAGDP  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      ++.+....
T Consensus       163 a~~lp~~~  170 (200)
T KOG0092|consen  163 AEKLPCSD  170 (200)
T ss_pred             HHhccCcc
Confidence            99997654

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-37  Score=210.06  Aligned_cols=170  Identities=31%  Similarity=0.546  Sum_probs=153.8

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCC
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (199)
                      .....+.+|++++|+.++|||||+.||+...+...|.+|+|+++-...+.+.+..+.+++|||+|+++|+++...|++++
T Consensus        16 ~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds   95 (221)
T KOG0094|consen   16 FGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   95 (221)
T ss_pred             cCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCC
Confidence            34556779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCC-ccccHH-HHHHHHHcCCcEEEeccCCCCChHH
Q 029077           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      +++|+|||+++..||+...+|+..+.....  ++-+++||||.||.+ ++...+ ....+++++..|+++||+.|.||++
T Consensus        96 ~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~  175 (221)
T KOG0094|consen   96 SVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQ  175 (221)
T ss_pred             eEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHH
Confidence            999999999999999999999999988763  466779999999987 444443 3478899999999999999999999


Q ss_pred             HHHHHHHHHhCCCC
Q 029077          163 PFLYLARKLAGDPN  176 (199)
Q Consensus       163 ~~~~i~~~~~~~~~  176 (199)
                      +|.-|+.++.+...
T Consensus       176 lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  176 LFRRIAAALPGMEV  189 (221)
T ss_pred             HHHHHHHhccCccc
Confidence            99999988876554

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.4e-37  Score=202.06  Aligned_cols=170  Identities=31%  Similarity=0.528  Sum_probs=156.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      .-..+||++||++|+|||||+.+|..+.+.+....|+|+++....+.+++..+++.+|||+|+++|+.+...|++.+.++
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi   87 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI   87 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence            35679999999999999999999999999999888999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      |+|||++.+++|..+..|..++..++  +++-.++||||+|.++ +.+. .+.+.+++.+.+-++++||++..|++..|+
T Consensus        88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe  167 (209)
T KOG0080|consen   88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE  167 (209)
T ss_pred             EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence            99999999999999999999999887  4566679999999884 4444 355799999999999999999999999999


Q ss_pred             HHHHHHhCCCCCce
Q 029077          166 YLARKLAGDPNLHF  179 (199)
Q Consensus       166 ~i~~~~~~~~~~~~  179 (199)
                      .++..+.+.|.+.-
T Consensus       168 elveKIi~tp~l~~  181 (209)
T KOG0080|consen  168 ELVEKIIETPSLWE  181 (209)
T ss_pred             HHHHHHhcCcchhh
Confidence            99999999887744

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=2.3e-36  Score=213.20  Aligned_cols=165  Identities=23%  Similarity=0.502  Sum_probs=148.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      ..+||+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            46999999999999999999999888888888888888877777888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      |||++++.+|+.+..|+..+....++.|+++||||.|+.+ +.+.. +...+++..++.+++|||++|.|++++|.+|++
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~  164 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR  164 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999999988778999999999999975 33333 456888889999999999999999999999999


Q ss_pred             HHhCCCC
Q 029077          170 KLAGDPN  176 (199)
Q Consensus       170 ~~~~~~~  176 (199)
                      .+.....
T Consensus       165 ~i~~~~~  171 (189)
T cd04121         165 IVLMRHG  171 (189)
T ss_pred             HHHHhcC
Confidence            8886655

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.8e-35  Score=213.66  Aligned_cols=190  Identities=79%  Similarity=1.326  Sum_probs=169.0

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      ..+...+||+++|++|||||||+++++.+.+...+.+|.+.++....+..+++.+.+.+||++|++.+...+..++.+++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            45677899999999999999999988889898889999999888888877888999999999999998888888899999


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      ++++|||+++..++..+..|+..+.....+.|+++++||.|+.++....+...++...++.++++|+++|.|++++|.+|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~i  163 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999999887778899999999999977655556667777888999999999999999999999


Q ss_pred             HHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          168 ARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       168 ~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ++++..+|.++++|||+..+.+..+|....
T Consensus       164 a~~l~~~p~~~~ldEp~~~~~~~~ld~~~~  193 (215)
T PTZ00132        164 ARRLTNDPNLVFVGAPALAPEEIQIDPELV  193 (215)
T ss_pred             HHHHhhcccceecCCcccCCCccccCHHHH
Confidence            999999999999999994444444887654

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-36  Score=206.81  Aligned_cols=167  Identities=31%  Similarity=0.582  Sum_probs=154.7

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      .-...+||+++|++|||||+|+.+|..+.+...+..|.|+++....+..++..+.+++|||+|+++++.....|++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +++|||+++..||+++..|+..+.+..+ .+|.++||||+|+.+ +.+.. ....++.++|+.++|+||++|.||.+.|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            9999999999999999999999999874 899999999999987 34444 44689999999999999999999999999


Q ss_pred             HHHHHHhCCC
Q 029077          166 YLARKLAGDP  175 (199)
Q Consensus       166 ~i~~~~~~~~  175 (199)
                      .|++.+....
T Consensus       168 ~La~~i~~k~  177 (207)
T KOG0078|consen  168 SLARDILQKL  177 (207)
T ss_pred             HHHHHHHhhc
Confidence            9999988533

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.6e-35  Score=206.85  Aligned_cols=158  Identities=28%  Similarity=0.489  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|..|+|||||+.+|..+.+...+.+|.+..+ ...+..++..+.+.+|||+|+++++..+..++++++++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6999999999999999999999999888999998665 445667888899999999999999999999999999999999


Q ss_pred             eCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCcc-----------c-cHHHHHHHHHcCC-cEEEeccCCCCC
Q 029077           94 DVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------V-KAKQVTFHRKKNL-QYYEISAKSNYN  159 (199)
Q Consensus        94 d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-----------~-~~~~~~~~~~~~~-~~~~~s~~~~~~  159 (199)
                      |++++++|+.+ ..|+..+....++.|+++||||.|+.+..           + ..+...+++..+. .|+||||++|.|
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n  160 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN  160 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence            99999999998 68999998777889999999999996532           2 3345678888887 599999999999


Q ss_pred             hHHHHHHHHHHHh
Q 029077          160 FEKPFLYLARKLA  172 (199)
Q Consensus       160 v~~~~~~i~~~~~  172 (199)
                      ++++|..+++.+.
T Consensus       161 V~~~F~~~~~~~~  173 (176)
T cd04133         161 VKAVFDAAIKVVL  173 (176)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3.6e-35  Score=203.96  Aligned_cols=165  Identities=87%  Similarity=1.425  Sum_probs=148.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||+++++.+.+...+.++.+.+........++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988888888899998888877777778899999999999998888888999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077           94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      |+++++++..+..|+..+.....+.|+++|+||.|+.++....+...+++..++.++++||++|.|++++|++|++.+.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            99999999999999999988877899999999999986655555566777788899999999999999999999999988


Q ss_pred             CCCCc
Q 029077          174 DPNLH  178 (199)
Q Consensus       174 ~~~~~  178 (199)
                      .+++.
T Consensus       161 ~~~~~  165 (166)
T cd00877         161 NPNLE  165 (166)
T ss_pred             ccccc
Confidence            77654

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-36  Score=202.25  Aligned_cols=174  Identities=30%  Similarity=0.507  Sum_probs=157.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+|++++|+.|+|||+|+.+|....|.+.+..|.|+++-...+.++++.+++++|||+|++.|++....|++.+.++|
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||++.+++|..+..|+..+.+.. ++..++++|||.|+..+ .+.. |...|++++++.++++||+++.|++|+|..+
T Consensus        84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nt  163 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINT  163 (216)
T ss_pred             EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHH
Confidence            9999999999999999999999985 89999999999999864 3333 4568999999999999999999999999999


Q ss_pred             HHHHhCCCCCceecCCC
Q 029077          168 ARKLAGDPNLHFVESPA  184 (199)
Q Consensus       168 ~~~~~~~~~~~~~~~p~  184 (199)
                      ++.++...+.-..++-.
T Consensus       164 a~~Iy~~~q~g~~~~~~  180 (216)
T KOG0098|consen  164 AKEIYRKIQDGVFDDIN  180 (216)
T ss_pred             HHHHHHHHHhccccccc
Confidence            99988655554444433

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=3.1e-35  Score=209.29  Aligned_cols=161  Identities=29%  Similarity=0.601  Sum_probs=142.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +.|+++|..|||||||+++|..+.+...+.+|.|.++....+.+++..+.+.+||++|+++++..+..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46899999999999999999999998888999998888878888888899999999999999999999999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHc-CCcEEEeccCCCCChHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      |++++++|+.+..|+..+.... .+.|+++||||.|+.+ +.+.. +...+++.. ++.++++||++|.|++++|.++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887664 5799999999999964 33433 344677664 788999999999999999999999


Q ss_pred             HHhCC
Q 029077          170 KLAGD  174 (199)
Q Consensus       170 ~~~~~  174 (199)
                      .+...
T Consensus       161 ~~~~~  165 (202)
T cd04120         161 DILKK  165 (202)
T ss_pred             HHHHh
Confidence            88654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=7.2e-36  Score=200.16  Aligned_cols=166  Identities=31%  Similarity=0.635  Sum_probs=151.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+++|++|+|||||+++|....|...+..|+|.++-...+.++++.+.+++|||+|+++|.++...+++.+|.++
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCC---ccccH-HHHHHHHHcC-CcEEEeccCCCCCh
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQVKA-KQVTFHRKKN-LQYYEISAKSNYNF  160 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~---~~~~~-~~~~~~~~~~-~~~~~~s~~~~~~v  160 (199)
                      +|||++++.||+.+..|..++..+.     ...|+|++|||+|+.+   +++.. ...++|+..+ ++|||+||+...||
T Consensus        87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV  166 (210)
T KOG0394|consen   87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV  166 (210)
T ss_pred             EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence            9999999999999999999998765     2589999999999976   55555 4568888765 89999999999999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 029077          161 EKPFLYLARKLAGDPN  176 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~  176 (199)
                      .+.|..+++...++..
T Consensus       167 ~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  167 DEAFEEIARRALANED  182 (210)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999998876664

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=3.9e-35  Score=206.00  Aligned_cols=161  Identities=24%  Similarity=0.410  Sum_probs=142.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+++|+.|||||||+++|..+.+...+.||.+..+. ..+.+++..+.+.+|||+|++.+...+..+++++|+++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            35689999999999999999999999998889999986553 55677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCC-------------ccc-cHHHHHHHHHcCC-cEEEecc
Q 029077           91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQV-KAKQVTFHRKKNL-QYYEISA  154 (199)
Q Consensus        91 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~-------------~~~-~~~~~~~~~~~~~-~~~~~s~  154 (199)
                      +|||++++.+|+.+ ..|+..+....++.|+++||||.|+.+             +.+ ..+..++++..++ .|++|||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  161 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  161 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            99999999999997 799999988888999999999999864             123 3456688999995 8999999


Q ss_pred             CCCCC-hHHHHHHHHHHHh
Q 029077          155 KSNYN-FEKPFLYLARKLA  172 (199)
Q Consensus       155 ~~~~~-v~~~~~~i~~~~~  172 (199)
                      ++|.| ++++|..+++++.
T Consensus       162 k~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         162 LQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            99998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=6e-35  Score=207.51  Aligned_cols=167  Identities=86%  Similarity=1.406  Sum_probs=149.4

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh
Q 029077           19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR   98 (199)
Q Consensus        19 iG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   98 (199)
                      +|..|||||||+++|+.+.+...+.+|.|.++....+..++..+.+.+||++|++++...+..++++++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            59999999999999998888888899999999888888888899999999999999999999999999999999999999


Q ss_pred             hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCCCCc
Q 029077           99 LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLH  178 (199)
Q Consensus        99 ~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~  178 (199)
                      .+|..+..|+..+.+..++.|+++||||.|+.++.+..+...+++..++.|++|||++|.|++++|.+|++.+.+..++.
T Consensus        81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~  160 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE  160 (200)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcccce
Confidence            99999999999998877899999999999997766555666788888999999999999999999999999998776654


Q ss_pred             eecCCCC
Q 029077          179 FVESPAL  185 (199)
Q Consensus       179 ~~~~p~~  185 (199)
                      +...|..
T Consensus       161 ~~~~~~~  167 (200)
T smart00176      161 FVAMPAL  167 (200)
T ss_pred             eccCccc
Confidence            4444433

Ran is involved in the active transport of proteins through nuclear pores.

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=9.3e-35  Score=203.69  Aligned_cols=159  Identities=23%  Similarity=0.399  Sum_probs=139.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      ++||+++|+.|||||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+...+..+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            579999999999999999999999998889999876653 4667788889999999999999999999999999999999


Q ss_pred             EeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCC-------------ccc-cHHHHHHHHHcCC-cEEEeccCC
Q 029077           93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQV-KAKQVTFHRKKNL-QYYEISAKS  156 (199)
Q Consensus        93 ~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~-------------~~~-~~~~~~~~~~~~~-~~~~~s~~~  156 (199)
                      ||++++++|+.+ ..|+..+....++.|+++||||.|+.+             +.+ ..+..++++..++ .|++|||++
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            999999999996 789999988888999999999999854             112 3456688999997 799999999


Q ss_pred             CCC-hHHHHHHHHHHHh
Q 029077          157 NYN-FEKPFLYLARKLA  172 (199)
Q Consensus       157 ~~~-v~~~~~~i~~~~~  172 (199)
                      |.+ ++++|..++++..
T Consensus       160 ~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         160 SEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            985 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1.1e-34  Score=205.71  Aligned_cols=162  Identities=31%  Similarity=0.536  Sum_probs=140.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      |..+||+++|+.|||||||+++|..+.+...+.+|.+..+. ....+++..+.+.+||++|+++++..+..+++++|++|
T Consensus         1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i   79 (191)
T cd01875           1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI   79 (191)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence            35699999999999999999999999998889999985543 34566788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------c-cHHHHHHHHHcC-CcEEEecc
Q 029077           91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKN-LQYYEISA  154 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~-~~~~~~~~~~~~-~~~~~~s~  154 (199)
                      +|||++++.+|+.+. .|+..+....++.|+++||||.|+.+..             + ..+...+++..+ ..++++||
T Consensus        80 lvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          80 ICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            999999999999996 6988887766789999999999996531             1 224456788887 58999999


Q ss_pred             CCCCChHHHHHHHHHHHhC
Q 029077          155 KSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       155 ~~~~~v~~~~~~i~~~~~~  173 (199)
                      ++|.|++++|.++++.+..
T Consensus       160 k~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998865

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=192.15  Aligned_cols=160  Identities=33%  Similarity=0.600  Sum_probs=150.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      -++.+|+|++|+|||+|+.+|....|...|..|.|+++....+.+++..+++.+||++|+++|+.....+++..+++++|
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV   87 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   87 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc--HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      ||+++.+||.+..+|+.++...++.+|-++||||.|..++...  .+...++...++.+|++|+++..|++.+|..|.+.
T Consensus        88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q  167 (198)
T KOG0079|consen   88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ  167 (198)
T ss_pred             EECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999986554  45678999999999999999999999999999987


Q ss_pred             Hh
Q 029077          171 LA  172 (199)
Q Consensus       171 ~~  172 (199)
                      +.
T Consensus       168 vl  169 (198)
T KOG0079|consen  168 VL  169 (198)
T ss_pred             HH
Confidence            65

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=8.1e-34  Score=205.25  Aligned_cols=163  Identities=21%  Similarity=0.357  Sum_probs=143.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+++|+.|||||||+++|..+.+...+.+|.+..+. ..+.+++..+.+.+|||+|++.+......++++++++|
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            45789999999999999999999999999999999986654 45677888899999999999999998999999999999


Q ss_pred             EEEeCCChhhHhc-HHHHHHHHHhhcCCCcEEEEEeCCCCCC-------------ccc-cHHHHHHHHHcCC-cEEEecc
Q 029077           91 IMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQV-KAKQVTFHRKKNL-QYYEISA  154 (199)
Q Consensus        91 ~v~d~~~~~s~~~-~~~~~~~l~~~~~~~p~iiv~~K~D~~~-------------~~~-~~~~~~~~~~~~~-~~~~~s~  154 (199)
                      +|||++++.+|+. +..|+..+....++.|+++||||.|+.+             +.+ ..+..++++..++ .|++|||
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA  169 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA  169 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence            9999999999998 4799999988778899999999999864             223 3356789999998 6999999


Q ss_pred             CCCC-ChHHHHHHHHHHHhCC
Q 029077          155 KSNY-NFEKPFLYLARKLAGD  174 (199)
Q Consensus       155 ~~~~-~v~~~~~~i~~~~~~~  174 (199)
                      ++|. |++++|..+++.+.++
T Consensus       170 ktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         170 FTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CcCCcCHHHHHHHHHHHHHHh
Confidence            9997 8999999999988643

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=9.6e-34  Score=199.31  Aligned_cols=159  Identities=24%  Similarity=0.403  Sum_probs=139.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|..|||||||+++|..+.+...+.+|.|.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998889999998887777888888899999999999999999999999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCCc-------cccHHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      |++++.+|..+..|+..+....+ ..| ++||||.|+...       ....+...+++..+.+++++||++|.|++++|.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999998877654 455 678999998521       122334567888889999999999999999999


Q ss_pred             HHHHHHhC
Q 029077          166 YLARKLAG  173 (199)
Q Consensus       166 ~i~~~~~~  173 (199)
                      ++++.+.+
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99998865

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.5e-33  Score=201.63  Aligned_cols=163  Identities=34%  Similarity=0.594  Sum_probs=142.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      +||+++|++|||||||+++|+.+.+...+.+|.+.++....+..+ +..+.+.+||++|++.++..+..++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999998888889999988777777776 7789999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCC-c-cccHHHHHHHHHcC-CcEEEeccCCCCChHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN-R-QVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~-~-~~~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~  164 (199)
                      ||++++.+|+.+..|+..+....     .++|+++|+||.|+.+ + ....+..++++..+ ..++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998886542     5789999999999973 3 33344567888888 689999999999999999


Q ss_pred             HHHHHHHhCCCC
Q 029077          165 LYLARKLAGDPN  176 (199)
Q Consensus       165 ~~i~~~~~~~~~  176 (199)
                      .+|++.+....+
T Consensus       161 ~~l~~~l~~~~~  172 (201)
T cd04107         161 RFLVKNILANDK  172 (201)
T ss_pred             HHHHHHHHHhch
Confidence            999998876543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=1.3e-33  Score=196.36  Aligned_cols=161  Identities=34%  Similarity=0.559  Sum_probs=142.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||+++|..+.+...+.++.+.++.......++..+.+.+||++|++.+...+..++++++++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999988888888888888777777788889999999999999999889999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||++++++|+.+..|+..+.... ++.|+++|+||.|+.+.. .. .+...+++..+++++++||++|.|+.++|..+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999886654 578999999999997643 33 4556788888899999999999999999999998


Q ss_pred             HHhC
Q 029077          170 KLAG  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            8754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=2.7e-33  Score=193.71  Aligned_cols=157  Identities=28%  Similarity=0.547  Sum_probs=139.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||+++++.+.+...+.++.+.+.......+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888899998887777777877899999999999999988899999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCCcc-c-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      |++++++|+.+..|+..+..... +.|+++|+||.|+.+.. . ..+...+++..+.+++++||++|.|++++|.+|++.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999998877653 68999999999996533 3 345567788888999999999999999999999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1.9e-33  Score=196.39  Aligned_cols=161  Identities=30%  Similarity=0.491  Sum_probs=139.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|.+|||||||++++..+.+...+.++.+..+ ......++..+.+.+||++|++.++..+..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            58999999999999999999999999888888887444 34566677889999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      ||++++.+|..+..|...+.+..  +++|+++|+||.|+.+. .... +...+++..++++++|||++|.|++++|.+|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999988877643  57999999999998653 3333 45578888899999999999999999999999


Q ss_pred             HHHhCC
Q 029077          169 RKLAGD  174 (199)
Q Consensus       169 ~~~~~~  174 (199)
                      +.+...
T Consensus       161 ~~~~~~  166 (172)
T cd04141         161 REIRRK  166 (172)
T ss_pred             HHHHHh
Confidence            988753

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=5e-33  Score=192.38  Aligned_cols=160  Identities=31%  Similarity=0.518  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|.+|||||||+++++.+.+...+.++.+.+........++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998888877778777776666777778899999999999999999999999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077           94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      |++++.+++.+..|+..+....++.|+++|+||.|+... ...+...++...+++++++||++|.|++++|+.+++.+.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  159 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999877778999999999998543 2233446666778899999999999999999999987765


Q ss_pred             C
Q 029077          174 D  174 (199)
Q Consensus       174 ~  174 (199)
                      .
T Consensus       160 ~  160 (161)
T cd04124         160 Y  160 (161)
T ss_pred             c
Confidence            3

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=4e-33  Score=195.20  Aligned_cols=158  Identities=25%  Similarity=0.435  Sum_probs=134.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|..|||||||+++|..+.+...+.||.+..+. .....++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            379999999999999999999999998888899886554 3456677789999999999999988888899999999999


Q ss_pred             EeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcC-CcEEEeccCC
Q 029077           93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEISAKS  156 (199)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~-~~~~~~s~~~  156 (199)
                      ||++++++|+.+. .|+..+....++.|+++|+||.|+.+.             .+. .+...+++..+ ..|+++||++
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            9999999999987 599888777778999999999998542             122 23345666666 6899999999


Q ss_pred             CCChHHHHHHHHHHH
Q 029077          157 NYNFEKPFLYLARKL  171 (199)
Q Consensus       157 ~~~v~~~~~~i~~~~  171 (199)
                      |.|++++|+.++++.
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998854

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-34  Score=184.63  Aligned_cols=161  Identities=27%  Similarity=0.558  Sum_probs=149.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +|++++|...+|||||+.++...++...+.+|.|++++...+....+.+.+++|||+|+++++.....++++++++|++|
T Consensus        22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmy  101 (193)
T KOG0093|consen   22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMY  101 (193)
T ss_pred             eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEEE
Confidence            49999999999999999999999999999999999999998888888899999999999999999999999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-ccHH-HHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      |+++.+||..+..|...+..++ .+.|+|+|+||+|+.++. +..+ ...++..+|+.|||+|++.+.|++++|..+...
T Consensus       102 DitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~  181 (193)
T KOG0093|consen  102 DITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDI  181 (193)
T ss_pred             ecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHH
Confidence            9999999999999999999887 789999999999998754 4444 468999999999999999999999999999888


Q ss_pred             HhCC
Q 029077          171 LAGD  174 (199)
Q Consensus       171 ~~~~  174 (199)
                      +..+
T Consensus       182 Ic~k  185 (193)
T KOG0093|consen  182 ICDK  185 (193)
T ss_pred             HHHH
Confidence            7654

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=4.2e-33  Score=200.57  Aligned_cols=162  Identities=23%  Similarity=0.421  Sum_probs=139.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      ++||+|+|+.|||||||+++|..+.+...+.||.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            479999999999999999999999998889999886554 4667788889999999999999999999999999999999


Q ss_pred             EeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCc--------------cccHHHHHHHHHcCC-cEEEeccCC
Q 029077           93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS  156 (199)
Q Consensus        93 ~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~--------------~~~~~~~~~~~~~~~-~~~~~s~~~  156 (199)
                      ||++++++|+.+ ..|...+....++.|+++||||.|+.+.              ....+...+++..++ .|+||||++
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999998 4688888777789999999999999642              112345678888885 899999999


Q ss_pred             CCC-hHHHHHHHHHHHhCCC
Q 029077          157 NYN-FEKPFLYLARKLAGDP  175 (199)
Q Consensus       157 ~~~-v~~~~~~i~~~~~~~~  175 (199)
                      +.+ ++++|..++++.....
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         160 SERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhcc
Confidence            884 9999999999876543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=6e-33  Score=198.17  Aligned_cols=166  Identities=31%  Similarity=0.545  Sum_probs=146.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      ..+||+++|++|||||||+++|..+.+...+.+|.+.++....+..++..+.+.+||++|++.+...+..++++++++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            46999999999999999999999888888888899888877777777778899999999999999899999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc-c-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      |||++++++|..+..|+..+....+..|+++|+||.|+.+... . .+...+++..+..++++|+++|.|++++|.+|.+
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~  164 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE  164 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence            9999999999999999999988778899999999999976432 3 3445677788899999999999999999999999


Q ss_pred             HHhCCCCC
Q 029077          170 KLAGDPNL  177 (199)
Q Consensus       170 ~~~~~~~~  177 (199)
                      .+......
T Consensus       165 ~~~~~~~~  172 (199)
T cd04110         165 LVLRAKKD  172 (199)
T ss_pred             HHHHhhhc
Confidence            88765443

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=7.2e-33  Score=192.34  Aligned_cols=160  Identities=28%  Similarity=0.579  Sum_probs=140.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||+++|..+.+...+.++.|.++.......++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999888888889887777666666777899999999999999888899999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-c-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      |+++.++++.+..|+..+.... .+.|+++|+||.|+.+.. . ..+...++...+++++++||++|.|+.++|+++++.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999999999999987765 478999999999997543 2 234456777888899999999999999999999987


Q ss_pred             HhC
Q 029077          171 LAG  173 (199)
Q Consensus       171 ~~~  173 (199)
                      +.+
T Consensus       162 ~~~  164 (165)
T cd01865         162 ICD  164 (165)
T ss_pred             HHh
Confidence            653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=5.4e-33  Score=192.37  Aligned_cols=158  Identities=36%  Similarity=0.701  Sum_probs=146.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (199)
                      ||+++|+.|||||||+++|..+.+...+.+|.|.+........++..+.+.+||++|++.+...+..+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999999999999999999999999999999998888899999999999999


Q ss_pred             CCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077           95 VTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      ++++++|..+..|+..+....+ +.|++++|||.|+.+ +.+.. +...+++.++.+|+++|++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999887 699999999999986 44444 45689999999999999999999999999999887


Q ss_pred             h
Q 029077          172 A  172 (199)
Q Consensus       172 ~  172 (199)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            4

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=8.1e-33  Score=193.44  Aligned_cols=157  Identities=27%  Similarity=0.493  Sum_probs=134.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|.+|||||||+.+++.+.+...+.++.+. ........++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC   79 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence            379999999999999999999999998888888763 3344556777889999999999999999989999999999999


Q ss_pred             EeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------c-cHHHHHHHHHcC-CcEEEeccCC
Q 029077           93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKN-LQYYEISAKS  156 (199)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~-~~~~~~~~~~~~-~~~~~~s~~~  156 (199)
                      ||++++++|+.+. .|+..+....++.|+++|+||.|+.+..             + ..+...+++..+ +.+++|||++
T Consensus        80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          80 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            9999999999986 6888887777789999999999996421             2 234457787787 4899999999


Q ss_pred             CCChHHHHHHHHHH
Q 029077          157 NYNFEKPFLYLARK  170 (199)
Q Consensus       157 ~~~v~~~~~~i~~~  170 (199)
                      |.|++++|+.+++.
T Consensus       160 ~~~i~~~f~~l~~~  173 (174)
T cd01871         160 QKGLKTVFDEAIRA  173 (174)
T ss_pred             cCCHHHHHHHHHHh
Confidence            99999999999874

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.2e-32  Score=191.39  Aligned_cols=160  Identities=33%  Similarity=0.617  Sum_probs=141.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||++++..+.+...+.++.+.++.......++..+.+.+||++|++++...+..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999998888888888888887777777787889999999999999988889999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||+++++++..+..|+..+.... ++.|+++|+||.|+.+.. .. .+...+++..+++++++||++|.|+.++|..|++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999987765 578999999999986532 32 4456777888899999999999999999999998


Q ss_pred             HHh
Q 029077          170 KLA  172 (199)
Q Consensus       170 ~~~  172 (199)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            875

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=1.2e-32  Score=191.67  Aligned_cols=161  Identities=30%  Similarity=0.584  Sum_probs=142.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+......+++++|++++|
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v   82 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence            58999999999999999999999999888899998887777777788889999999999999888888899999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||++++.+|..+..|+..+.... .+.|+++|+||.|+.+. ... .+...++...+.+++++||++|.|+.++|.++++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  162 (167)
T cd01867          83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAK  162 (167)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999888764 57899999999999753 233 3445677788899999999999999999999999


Q ss_pred             HHhC
Q 029077          170 KLAG  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+..
T Consensus       163 ~~~~  166 (167)
T cd01867         163 DIKK  166 (167)
T ss_pred             HHHh
Confidence            8764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=9.4e-33  Score=194.36  Aligned_cols=162  Identities=31%  Similarity=0.551  Sum_probs=140.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec----------CcEEEEEEEeCCCcccccccccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----------CGKIRFYCWDTAGQEKFGGLRDG   81 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~~   81 (199)
                      ..+||+++|++|||||||++++..+.+...+.++.+.++......+.          +..+.+.+||++|++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            45899999999999999999999999988889999887766655543          45689999999999999999999


Q ss_pred             cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCC
Q 029077           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN  157 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                      +++++|++++|||++++++|..+..|+..+....  ++.|+++|+||.|+.+. ... .+...+++..+++++++||++|
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  162 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG  162 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            9999999999999999999999999999887653  57899999999999753 333 3456788888999999999999


Q ss_pred             CChHHHHHHHHHHHhC
Q 029077          158 YNFEKPFLYLARKLAG  173 (199)
Q Consensus       158 ~~v~~~~~~i~~~~~~  173 (199)
                      .|++++|++|++.+.+
T Consensus       163 ~~v~~l~~~l~~~~~~  178 (180)
T cd04127         163 TNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999987764

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.7e-34  Score=184.72  Aligned_cols=175  Identities=28%  Similarity=0.535  Sum_probs=156.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      -+|++++|+.|+|||+|+.+|+.+.|......|.|+++....+.+.++.+++++|||+|+++|++..+.|++.+.+.++|
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV   88 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   88 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||++++++|..+..|+...+... +++-++++|||.|+.+. ++.. +...++++..+.+.++|+++|+|++|.|-..++
T Consensus        89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~  168 (214)
T KOG0086|consen   89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR  168 (214)
T ss_pred             EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence            99999999999999999998875 57888899999999863 4443 456899999999999999999999999999999


Q ss_pred             HHhCCCCCceecCCCCCC
Q 029077          170 KLAGDPNLHFVESPALAP  187 (199)
Q Consensus       170 ~~~~~~~~~~~~~p~~~~  187 (199)
                      .+...-+.--+|.....+
T Consensus       169 tIl~kIE~GElDPer~gs  186 (214)
T KOG0086|consen  169 TILNKIESGELDPERMGS  186 (214)
T ss_pred             HHHHHHhhcCCCHHHccc
Confidence            888766655555444443

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=1.2e-32  Score=191.43  Aligned_cols=159  Identities=27%  Similarity=0.546  Sum_probs=140.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||+++|..+.+...+.++.+.++.......++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988889999998887777888888899999999999998888889999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc------CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~------~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      |++++.++..+..|+..+....      .+.|+++|+||.|+.+ .... .+...+++..+++++++||++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            9999999999999999987764      3689999999999974 3333 334467777889999999999999999999


Q ss_pred             HHHHHHh
Q 029077          166 YLARKLA  172 (199)
Q Consensus       166 ~i~~~~~  172 (199)
                      +|++.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=1.9e-32  Score=190.90  Aligned_cols=159  Identities=28%  Similarity=0.466  Sum_probs=138.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (199)
                      ||+++|.+|||||||+++|+.+.+...+.+|.+.++.......++..+.+.+||++|++++...+..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999999999999988877777788888999999999999999999999999999999999


Q ss_pred             CCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccc----cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      +++++++..+..|+..+.+..  .+.|+++|+||.|+.+...    ..+...++...+.+++++||++|.|++++|..|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999876543  3477899999999864321    2233466777788999999999999999999999


Q ss_pred             HHHhC
Q 029077          169 RKLAG  173 (199)
Q Consensus       169 ~~~~~  173 (199)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.3e-33  Score=189.91  Aligned_cols=163  Identities=33%  Similarity=0.544  Sum_probs=151.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ..-+||+++|++|+|||-|+.||..+.|..+..+|.|+++......++++.++.++|||+|+++|+.....|++.+-+++
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl   91 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   91 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-ccc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||++.+.+|+.+..|+.+++... +++++++||||.|+.+ +.+ .++...++...+..++++||+.+.|+++.|..+
T Consensus        92 lVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~  171 (222)
T KOG0087|consen   92 LVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERV  171 (222)
T ss_pred             EEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHH
Confidence            9999999999999999999999987 7899999999999987 333 345568999999999999999999999999988


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      +..+..
T Consensus       172 l~~I~~  177 (222)
T KOG0087|consen  172 LTEIYK  177 (222)
T ss_pred             HHHHHH
Confidence            887753

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=2.6e-32  Score=188.88  Aligned_cols=157  Identities=31%  Similarity=0.674  Sum_probs=138.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec--CcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      +||+++|.+|+|||||++++..+.+...+.++.+.++......+.  +..+.+.+||+||++.+...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999888888888898888766666665  678999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      |||+++++++..+..|+..+.....+.|+++|+||.|+... ... .+...+++..+++++++|+++|.|++++|.+|+.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998877789999999999998653 333 3445778888999999999999999999999876


Q ss_pred             H
Q 029077          170 K  170 (199)
Q Consensus       170 ~  170 (199)
                      .
T Consensus       161 ~  161 (162)
T cd04106         161 K  161 (162)
T ss_pred             h
Confidence            4

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=4.1e-32  Score=192.41  Aligned_cols=159  Identities=31%  Similarity=0.500  Sum_probs=134.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      .||+++|++|||||||+++|..+.+...+.+|.+..+. .....++..+.+.+||++|++.+...+..++..++++++||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999999999888888888875543 34455677799999999999999888888999999999999


Q ss_pred             eCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCccc--------------cHHHHHHHHHcC-CcEEEeccCCC
Q 029077           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKSN  157 (199)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--------------~~~~~~~~~~~~-~~~~~~s~~~~  157 (199)
                      |++++.+|+.+. .|+..+....++.|+++|+||.|+.+...              ..+...+++..+ +.|+++||++|
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            999999999886 59998888778899999999999965321              122345666665 68999999999


Q ss_pred             CChHHHHHHHHHHHhC
Q 029077          158 YNFEKPFLYLARKLAG  173 (199)
Q Consensus       158 ~~v~~~~~~i~~~~~~  173 (199)
                      .|++++|.++++.+..
T Consensus       160 ~~v~e~f~~l~~~~~~  175 (189)
T cd04134         160 RGVNEAFTEAARVALN  175 (189)
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999998874

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=6.4e-32  Score=188.45  Aligned_cols=160  Identities=32%  Similarity=0.618  Sum_probs=139.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      +..+||+++|++|||||||+++|..+.+...+.++.|.+.....+..++..+.+.+||++|++++...+..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            46799999999999999999999998888888888888877777778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCccccH-HHHHHHHHcC-CcEEEeccCCCCChHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKP  163 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~-~~~~~~s~~~~~~v~~~  163 (199)
                      +|||++++.+++.+..|...+....     .+.|+++|+||.|+..+.... +..++++..+ .+++++||++|.|+.++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  162 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA  162 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence            9999999999999999998876643     368999999999997654443 4457777777 47999999999999999


Q ss_pred             HHHHHHH
Q 029077          164 FLYLARK  170 (199)
Q Consensus       164 ~~~i~~~  170 (199)
                      |..+++.
T Consensus       163 ~~~~~~~  169 (170)
T cd04116         163 FEEAVRR  169 (170)
T ss_pred             HHHHHhh
Confidence            9999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=6.4e-32  Score=191.38  Aligned_cols=164  Identities=32%  Similarity=0.574  Sum_probs=142.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||+++|..+.+...+.++.|.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999998888778889988877777777777899999999999998888999999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      |++++.+|..+..|+..+.... .+.|+++|+||.|+.+. ... .+...++...+++++++||++|.|++++|.++++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999988765 46899999999999753 333 33446777778899999999999999999999999


Q ss_pred             HhCCCCC
Q 029077          171 LAGDPNL  177 (199)
Q Consensus       171 ~~~~~~~  177 (199)
                      +......
T Consensus       161 ~~~~~~~  167 (188)
T cd04125         161 IIKRLEE  167 (188)
T ss_pred             HHHHhhc
Confidence            8764433

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=5.4e-32  Score=191.83  Aligned_cols=164  Identities=27%  Similarity=0.523  Sum_probs=139.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ++..+||+++|++|||||||++++..+.+...+.+|.+.++ .....+++..+.+.+||++|++.+..++..+++.++++
T Consensus         2 ~~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~i   80 (189)
T PTZ00369          2 ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGF   80 (189)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEE
Confidence            35679999999999999999999998888777888877554 44556677888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      ++|||++++++|+.+..|+..+....  ++.|+++|+||.|+.+. ... .+...+++..+.+++++||++|.|++++|.
T Consensus        81 ilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~  160 (189)
T PTZ00369         81 LCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFY  160 (189)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHH
Confidence            99999999999999999999887654  47899999999998653 223 234566777788999999999999999999


Q ss_pred             HHHHHHhCC
Q 029077          166 YLARKLAGD  174 (199)
Q Consensus       166 ~i~~~~~~~  174 (199)
                      +|++.+...
T Consensus       161 ~l~~~l~~~  169 (189)
T PTZ00369        161 ELVREIRKY  169 (189)
T ss_pred             HHHHHHHHH
Confidence            999887643

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=6.2e-32  Score=195.08  Aligned_cols=161  Identities=30%  Similarity=0.510  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC-cEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      +||+++|++|||||||+++|..+.+...+.+|.+.+.......+++ ..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999998888888999999888777777754 578999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ||++++++|..+..|+..+....    .+.|+++|+||.|+.+ +.... +...+++..+++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999988764    2467999999999974 33333 345778888899999999999999999999


Q ss_pred             HHHHHhCC
Q 029077          167 LARKLAGD  174 (199)
Q Consensus       167 i~~~~~~~  174 (199)
                      |++.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99988753

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=5.1e-32  Score=187.59  Aligned_cols=157  Identities=31%  Similarity=0.573  Sum_probs=133.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||++++..+.+...+.+|.+ +........++..+.+.+||++|++++...+..++++++++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999998888777777776 334445566777889999999999999999999999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      |+++..+++.+..|...+....  .+.|+++|+||.|+.+. .... +...+++..+.+++++||++|.|+.++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999998887653  57999999999999653 3333 334567777889999999999999999999987


Q ss_pred             HH
Q 029077          170 KL  171 (199)
Q Consensus       170 ~~  171 (199)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            54

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=8.2e-32  Score=187.00  Aligned_cols=159  Identities=33%  Similarity=0.594  Sum_probs=139.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||++++..+.+...+.++.+.++....+..++..+.+.+||++|++.+......++++++++++|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            47999999999999999999998888888888998888888888888788999999999999888888899999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||+++..++..+..|+..+..... +.|+++|+||.|+.+. ... .+...++...++.++++||++|.|++++|+++++
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  162 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT  162 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999887764 5899999999999753 222 3445677777889999999999999999999987


Q ss_pred             HH
Q 029077          170 KL  171 (199)
Q Consensus       170 ~~  171 (199)
                      .+
T Consensus       163 ~i  164 (165)
T cd01868         163 EI  164 (165)
T ss_pred             Hh
Confidence            65

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=7.5e-32  Score=187.05  Aligned_cols=159  Identities=30%  Similarity=0.546  Sum_probs=135.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|.+|||||||++++..+.+...+.+|.+..+ ......++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            37999999999999999999998888777778877544 34566677789999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCcc-ccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~-~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      ||+++..+|+.+..|...+....  .+.|+++|+||.|+.+.. ... +...+++..+++++++||++|.|++++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999988887643  679999999999997643 232 23467777889999999999999999999999


Q ss_pred             HHHh
Q 029077          169 RKLA  172 (199)
Q Consensus       169 ~~~~  172 (199)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-33  Score=180.94  Aligned_cols=163  Identities=34%  Similarity=0.615  Sum_probs=146.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      -+||+++|..|+|||+|+++|..+.|++....|.|+++--..+.+++..+++++|||+|+++|++..+.|++.++++|++
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccHHH-HHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~~~-~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||++...+|+.+.+|+.++.++. .++--|+||||.|+.++ ++++.. .+++.....-|.++||++..|++.+|..++-
T Consensus        87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~  166 (213)
T KOG0095|consen   87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC  166 (213)
T ss_pred             EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence            99999999999999999999986 45566899999999885 444443 4677777777899999999999999999987


Q ss_pred             HHhCCC
Q 029077          170 KLAGDP  175 (199)
Q Consensus       170 ~~~~~~  175 (199)
                      .+....
T Consensus       167 rli~~a  172 (213)
T KOG0095|consen  167 RLISEA  172 (213)
T ss_pred             HHHHHH
Confidence            775443

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=8.5e-32  Score=186.20  Aligned_cols=158  Identities=33%  Similarity=0.621  Sum_probs=139.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||+++|..+.+...+.++.+.++......+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888888888888888777788888899999999999998888889999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      |+++++++..+..|+..+.... ++.|+++|+||.|+.+. .. ..+...+++..++.++++|+++|.|+.++|.++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            9999999999999999886654 68999999999999753 33 334457788888999999999999999999999875


Q ss_pred             H
Q 029077          171 L  171 (199)
Q Consensus       171 ~  171 (199)
                      +
T Consensus       161 ~  161 (161)
T cd04113         161 I  161 (161)
T ss_pred             C
Confidence            3

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.4e-31  Score=186.32  Aligned_cols=161  Identities=32%  Similarity=0.571  Sum_probs=141.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||++++..+.+...+.++.|.+........++....+.+||++|++.+......+++++|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999998888888888888888777777787788999999999999888888899999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||++++.++..+..|+..+.... ++.|+++|+||.|+.+ .... .+...++...++.++++|+++|.|+.++|.++++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~  163 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK  163 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999887754 6899999999999974 3333 3345677788899999999999999999999998


Q ss_pred             HHhC
Q 029077          170 KLAG  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+.+
T Consensus       164 ~~~~  167 (168)
T cd01866         164 EIYE  167 (168)
T ss_pred             HHHh
Confidence            8754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1.3e-31  Score=185.27  Aligned_cols=158  Identities=30%  Similarity=0.565  Sum_probs=135.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||+++|..+.+...+.++.+..+ ......++..+.+.+||++|++.+...+..++++++++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999998888777778776443 44456677778899999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||+++..++..+..|...+.+..  .+.|+++|+||.|+.++.... +...+++..+.+++++||++|.|++++|.++++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999988887664  478999999999997654433 345677778889999999999999999999987


Q ss_pred             HH
Q 029077          170 KL  171 (199)
Q Consensus       170 ~~  171 (199)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.3e-31  Score=190.24  Aligned_cols=162  Identities=29%  Similarity=0.581  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      +||+++|++|||||||+++|..+.+. ..+.++.+.++......+++..+.+.+||++|++++......+++.+|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999888775 35677887777666677788889999999999999888888899999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||+++..+++++..|+..+.... .+.|+++|+||.|+.. +... .+...++...+.+++++||++|.|++++|.+|++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999988776 3789999999999964 3333 3445677778889999999999999999999999


Q ss_pred             HHhCCC
Q 029077          170 KLAGDP  175 (199)
Q Consensus       170 ~~~~~~  175 (199)
                      .+....
T Consensus       161 ~~~~~~  166 (191)
T cd04112         161 ELKHRK  166 (191)
T ss_pred             HHHHhc
Confidence            998664

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=9e-32  Score=190.49  Aligned_cols=163  Identities=30%  Similarity=0.449  Sum_probs=137.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      +||+++|++|||||||+++|..+.+...+.++.+..+... .... +..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999999999999988888888877665433 4443 5678999999999999988888899999999999


Q ss_pred             EeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-----c-cHHHHHHHHHcCC-cEEEeccCCCCChHHHH
Q 029077           93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-----V-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPF  164 (199)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-----~-~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~  164 (199)
                      ||++++++|+.+. .|+..+....++.|+++|+||.|+.+..     . ..+..+++...+. +++++||++|.|+.++|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  159 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF  159 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence            9999999999886 5888887766789999999999986532     2 3344577888887 89999999999999999


Q ss_pred             HHHHHHHhCCCCC
Q 029077          165 LYLARKLAGDPNL  177 (199)
Q Consensus       165 ~~i~~~~~~~~~~  177 (199)
                      ..+++.+......
T Consensus       160 ~~l~~~~~~~~~~  172 (187)
T cd04132         160 DTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHhhhhh
Confidence            9999998865544

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=2.8e-31  Score=188.85  Aligned_cols=163  Identities=28%  Similarity=0.486  Sum_probs=140.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      +||+++|++|||||||+++|+.+.+.. .+.+|.+.++....+..++..+.+.+||++|++++...+..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999888864 6788888877777778888889999999999999888888889999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-----ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-----QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-----~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ||+++..+++.+..|+..+....++.|+++|+||.|+.+.     ... .+...++...+.+++++||++|.|++++|++
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  160 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK  160 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999998877678999999999998542     122 2334667777889999999999999999999


Q ss_pred             HHHHHhCCCC
Q 029077          167 LARKLAGDPN  176 (199)
Q Consensus       167 i~~~~~~~~~  176 (199)
                      |++.+...+.
T Consensus       161 i~~~~~~~~~  170 (193)
T cd04118         161 VAEDFVSRAN  170 (193)
T ss_pred             HHHHHHHhcc
Confidence            9998876543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=1.7e-31  Score=185.41  Aligned_cols=159  Identities=33%  Similarity=0.621  Sum_probs=137.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++.+......+++.+|++++|
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv   82 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA   82 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            58999999999999999999988888888888888777777777777778999999999999888888899999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCC-cEEEeccCCCCChHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      ||++++.++..+..|+..+.... .+.|+++|+||.|+.+. ... .+...+++..+. .++++||++|.|++++|.+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~  162 (165)
T cd01864          83 YDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMA  162 (165)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999987654 57899999999999753 333 344567777765 689999999999999999998


Q ss_pred             HHH
Q 029077          169 RKL  171 (199)
Q Consensus       169 ~~~  171 (199)
                      +.+
T Consensus       163 ~~l  165 (165)
T cd01864         163 TEL  165 (165)
T ss_pred             HhC
Confidence            753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1.7e-31  Score=185.05  Aligned_cols=158  Identities=30%  Similarity=0.550  Sum_probs=134.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      ++||+++|.+|||||||++++..+.+...+.++.+ .........++..+.+.+||++|++++...+..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            47999999999999999999999888877777765 44445666677788999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      ||+++.++++++..|+..+....  .++|+++|+||.|+... ... .+...++...+.+++++||++|.|+.++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999988887753  57999999999998643 222 234566667788999999999999999999998


Q ss_pred             HHH
Q 029077          169 RKL  171 (199)
Q Consensus       169 ~~~  171 (199)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=1.9e-31  Score=191.73  Aligned_cols=162  Identities=28%  Similarity=0.556  Sum_probs=140.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEe-cCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      .+||+++|++|||||||+++|..+.+...+.++.+.++....+.+ ++..+.+.+||++|++.+......+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            489999999999999999999988888878888888877766665 4567899999999999998888899999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      |||++++++|+.+..|+..+....  ...|+++|+||.|+.+. ... .+...+++..++.++++||++|.|+.++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999887654  35778999999999763 333 34457888888999999999999999999999


Q ss_pred             HHHHhCC
Q 029077          168 ARKLAGD  174 (199)
Q Consensus       168 ~~~~~~~  174 (199)
                      ++.+.+.
T Consensus       162 ~~~~~~~  168 (211)
T cd04111         162 TQEIYER  168 (211)
T ss_pred             HHHHHHH
Confidence            9988754

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=2.3e-31  Score=188.80  Aligned_cols=156  Identities=21%  Similarity=0.390  Sum_probs=125.4

Q ss_pred             ceEEEEEcCCCCCHHHHHH-HHhcCC-----CCCccccceeE-EEeeEE--------EEecCcEEEEEEEeCCCcccccc
Q 029077           13 SFKLVIVGDGGTGKTTFVK-RHLTGE-----FEKKYEPTIGV-EVHPLD--------FFTNCGKIRFYCWDTAGQEKFGG   77 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~   77 (199)
                      .+||+++|..|||||||+. ++..+.     +...+.||.+. +.+...        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4899999999999999995 544432     34567788763 322222        24577889999999999875  3


Q ss_pred             cccccccCCcEEEEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCC--------------------cccc-
Q 029077           78 LRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--------------------RQVK-  135 (199)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~--------------------~~~~-  135 (199)
                      ....+++++|++|+|||++++.+|+.+. .|+..+....++.|+++||||.|+.+                    +.+. 
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            4566889999999999999999999997 59998887777899999999999863                    2222 


Q ss_pred             HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077          136 AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus       136 ~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      .+...+++..+++|++|||++|.|++++|..++++
T Consensus       160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            34568899999999999999999999999999875

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=3e-31  Score=191.45  Aligned_cols=163  Identities=32%  Similarity=0.533  Sum_probs=144.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+++|++|||||||+++|..+.+...+.++.|.++....+.+++..+.+.+||++|++++......+++.+++++
T Consensus        10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i   89 (216)
T PLN03110         10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   89 (216)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence            35689999999999999999999988888788899999988888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||+++..+|+.+..|+..+.... .+.|+++|+||.|+.+. .... +...++...+++++++||++|.|++++|++|
T Consensus        90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l  169 (216)
T PLN03110         90 LVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTI  169 (216)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999887765 47999999999998653 3333 4456777788999999999999999999999


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      ++.+.+
T Consensus       170 ~~~i~~  175 (216)
T PLN03110        170 LLEIYH  175 (216)
T ss_pred             HHHHHH
Confidence            988865

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.8e-31  Score=189.29  Aligned_cols=162  Identities=32%  Similarity=0.532  Sum_probs=136.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (199)
                      ||+++|.+|||||||+++|..+.+...+.++.+..+. .....++..+.+.+||++|++++...+..+++.+|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            6899999999999999999988887777788764433 344567777899999999999999999999999999999999


Q ss_pred             CCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           95 VTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      +++..+|+.+..|+..+....    .+.|+++|+||.|+.+ +.... +...+++..+++++++||++|.|++++|.+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999988886643    4789999999999964 33332 34567777888999999999999999999999


Q ss_pred             HHHhCCCCC
Q 029077          169 RKLAGDPNL  177 (199)
Q Consensus       169 ~~~~~~~~~  177 (199)
                      +.+......
T Consensus       160 ~~l~~~~~~  168 (190)
T cd04144         160 RALRQQRQG  168 (190)
T ss_pred             HHHHHhhcc
Confidence            988755444

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=4.6e-31  Score=184.14  Aligned_cols=159  Identities=32%  Similarity=0.602  Sum_probs=138.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc-ccccccccCCcEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAII   91 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~   91 (199)
                      .+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+. ..+..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999888888888898888888788888888999999999998876 467778899999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCC---CCChHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKS---NYNFEKPF  164 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~---~~~v~~~~  164 (199)
                      |||++++.++..+..|+..+....  .++|+++|+||.|+.+. ... .+...+++..+++++++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999999887754  57999999999999753 333 344567788889999999999   88999999


Q ss_pred             HHHHHHH
Q 029077          165 LYLARKL  171 (199)
Q Consensus       165 ~~i~~~~  171 (199)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=4.3e-31  Score=184.91  Aligned_cols=157  Identities=29%  Similarity=0.489  Sum_probs=133.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 029077           16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV   95 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (199)
                      |+|+|++|||||||+++|..+.+...+.++.+..+ ......++..+.+.+||++|++.+...+..++..+|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999888877777776443 34556677788999999999999988888899999999999999


Q ss_pred             CChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------c-cHHHHHHHHHcCC-cEEEeccCCCCC
Q 029077           96 TARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISAKSNYN  159 (199)
Q Consensus        96 ~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~s~~~~~~  159 (199)
                      ++.++|+.+. .|+..+....++.|+++|+||.|+....             + ..+...+++..+. .++++||++|.|
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  159 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG  159 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            9999999986 5999998877899999999999986421             1 2233467888886 899999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 029077          160 FEKPFLYLARKLAG  173 (199)
Q Consensus       160 v~~~~~~i~~~~~~  173 (199)
                      ++++|..+++.+.+
T Consensus       160 v~~lf~~l~~~~~~  173 (174)
T smart00174      160 VREVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=4.9e-31  Score=182.78  Aligned_cols=160  Identities=34%  Similarity=0.696  Sum_probs=140.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||++++..+.+...+.++.+.++.......++..+.+.+||++|++.+......+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999888887778888888877777777877889999999999988888899999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      |+++..+++.+..|+..+.... ++.|+++|+||.|+.. .... .....+++..+++++++|+.+|.|+++++.+|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999887765 6899999999999876 3333 34456778888999999999999999999999998


Q ss_pred             HhC
Q 029077          171 LAG  173 (199)
Q Consensus       171 ~~~  173 (199)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            754

Rab GTPases are implicated in vesicle trafficking.

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=3.6e-31  Score=183.82  Aligned_cols=156  Identities=28%  Similarity=0.449  Sum_probs=131.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||+++++.+.+...+.++.+..+ ......+...+.+.+||++|++++......+++.++++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988877778776444 333445666789999999999999888888899999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      |++++++++.+..|+..+....    ++.|+++|+||.|+.+ +.... +...++...++.++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999999999988776643    5789999999999975 33333 3456677778899999999999999999998


Q ss_pred             HHH
Q 029077          168 ARK  170 (199)
Q Consensus       168 ~~~  170 (199)
                      ++.
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=5.4e-31  Score=182.69  Aligned_cols=158  Identities=27%  Similarity=0.546  Sum_probs=135.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      +||+++|++|||||||++++..+  .+...+.++.|.++........ +..+.+.+||++|++.+...+..++.++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999998754  5778888999888776666654 56799999999999988888888999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      +|||+++.+++..+..|+..+.....+.|+++|+||.|+.+. .... +...+....+++++++||++|.|++++|+.++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA  160 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence            999999999999999999998877678999999999999653 3333 23455666778899999999999999999999


Q ss_pred             HHH
Q 029077          169 RKL  171 (199)
Q Consensus       169 ~~~  171 (199)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04101         161 RAF  163 (164)
T ss_pred             HHh
Confidence            875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=4.4e-31  Score=189.98  Aligned_cols=155  Identities=29%  Similarity=0.486  Sum_probs=129.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|.+|||||||+++|+.+.+.. +.+|.|.++.....    ..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999888864 56777766544333    4678999999999999999999999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC--------------------cccc-HHHHHHHHHcC-----
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--------------------RQVK-AKQVTFHRKKN-----  146 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~--------------------~~~~-~~~~~~~~~~~-----  146 (199)
                      |++++++|..+..|+..+.... ++.|+++||||.|+.+                    +.+. ++...+++..+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            9999999999998877776543 5789999999999864                    2222 34457777765     


Q ss_pred             ---------CcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          147 ---------LQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       147 ---------~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                               ++|++|||++|.|++++|..+++.+..
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                     679999999999999999999988864

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=8.7e-31  Score=181.58  Aligned_cols=159  Identities=33%  Similarity=0.574  Sum_probs=133.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      +.+||+++|++|+|||||+++++.+.+...+.++.+... ......++..+.+.+||+||++++...+..+++.+|++++
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il   79 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL   79 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence            358999999999999999999998877777777766333 3345567777899999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      |||+++..++..+..|+..+....  .+.|+++++||.|+.... .. .+...+++..+++++++||++|.|++++|++|
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            999999999999999998887653  578999999999997543 23 24456777778899999999999999999999


Q ss_pred             HHHH
Q 029077          168 ARKL  171 (199)
Q Consensus       168 ~~~~  171 (199)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01861 Rab6 Rab6 subfamily

Probab=99.98  E-value=1e-30  Score=180.72  Aligned_cols=157  Identities=32%  Similarity=0.565  Sum_probs=137.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||+++++.+.+...+.++.+.++.......++..+.+.+||+||+..++.....+++.+|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999988888788888888888877777777789999999999999888888999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCC-CccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~-~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      |++++++|..+..|+..+..... +.|+++++||.|+. ...... +...+++..++.++++|+++|.|+++++.++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998876543 69999999999994 344343 3456677778999999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.98  E-value=8.9e-31  Score=181.60  Aligned_cols=158  Identities=30%  Similarity=0.564  Sum_probs=133.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||++++..+.+...+.++.+ +........++..+.+.+||++|++++...+..+++.++++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999998888777767665 333345556777889999999999999999899999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      |+++++++..+..|...+....  .+.|+++|+||.|+.+. ... .+...+++..+.+++++||++|.|++++|++|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            9999999999999988876653  47899999999999763 333 3344677778899999999999999999999998


Q ss_pred             HHh
Q 029077          170 KLA  172 (199)
Q Consensus       170 ~~~  172 (199)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04142 RRP22 RRP22 subfamily

Probab=99.98  E-value=1.6e-30  Score=185.08  Aligned_cols=162  Identities=20%  Similarity=0.285  Sum_probs=130.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc--------ccccccC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH   85 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~   85 (199)
                      +||+|+|.+|||||||+++|..+.+...+.++.+.+.....+..++..+.+.+|||+|...+...        ....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999888888888876665555667777899999999997543211        2234689


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCCc-cccHHH-HHHH-HHcCCcEEEeccCCCC
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNR-QVKAKQ-VTFH-RKKNLQYYEISAKSNY  158 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~~-~~~~~~-~~~~-~~~~~~~~~~s~~~~~  158 (199)
                      +|++|+|||++++++|+.+..|+..+....    .++|+++|+||+|+.+. ....+. ..++ +..+++++++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887653    57999999999999653 333332 3343 3568899999999999


Q ss_pred             ChHHHHHHHHHHHhCCC
Q 029077          159 NFEKPFLYLARKLAGDP  175 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~~~  175 (199)
                      |++++|..+++.+..+-
T Consensus       161 ~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         161 HILLLFKELLISATTRG  177 (198)
T ss_pred             CHHHHHHHHHHHhhccC
Confidence            99999999998877544

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.98  E-value=1.4e-30  Score=180.38  Aligned_cols=159  Identities=35%  Similarity=0.617  Sum_probs=139.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||++++..+.+...+.++.+.++......+++..+.+.+||++|++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999998888777788888777777788888889999999999998888888889999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-ccc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      +|+++.+++.....|+..+.... ++.|+++++||.|+.. ... ..+...++...++.++++|+++|.|+.++|.+|++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999887765 6789999999999874 332 33445677788899999999999999999999998


Q ss_pred             HH
Q 029077          170 KL  171 (199)
Q Consensus       170 ~~  171 (199)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PLN03108 Rab family protein; Provisional

Probab=99.98  E-value=1.1e-30  Score=187.76  Aligned_cols=163  Identities=32%  Similarity=0.543  Sum_probs=142.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      ..+||+++|++|||||||+++|..+.+...+.++.+.++......+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999998888888888888888877777788888899999999999988888889999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      |||+++..++..+..|+..+.... ++.|+++|+||.|+.+. ... .+...+++..+++++++||+++.|++++|.+++
T Consensus        85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~  164 (210)
T PLN03108         85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (210)
T ss_pred             EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999988876554 57999999999999764 333 345678888899999999999999999999999


Q ss_pred             HHHhCC
Q 029077          169 RKLAGD  174 (199)
Q Consensus       169 ~~~~~~  174 (199)
                      +.+..+
T Consensus       165 ~~~~~~  170 (210)
T PLN03108        165 AKIYKK  170 (210)
T ss_pred             HHHHHH
Confidence            988754

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=1.7e-30  Score=181.77  Aligned_cols=155  Identities=26%  Similarity=0.445  Sum_probs=131.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||++++..+.+...+.+|.. +........++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            5899999999999999999988888888877763 445556677777899999999999999999888999999999999


Q ss_pred             eCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcCC-cEEEeccCCC
Q 029077           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYEISAKSN  157 (199)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~~-~~~~~s~~~~  157 (199)
                      |++++++|+.+. .|+..+....++.|+++++||.|+...             .+. .+...+++..+. .++++||++|
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~  159 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ  159 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            999999999875 688888776678999999999998532             222 234577777777 8999999999


Q ss_pred             CChHHHHHHHHH
Q 029077          158 YNFEKPFLYLAR  169 (199)
Q Consensus       158 ~~v~~~~~~i~~  169 (199)
                      .|++++|+.++.
T Consensus       160 ~~v~~lf~~~~~  171 (173)
T cd04130         160 KNLKEVFDTAIL  171 (173)
T ss_pred             CCHHHHHHHHHh
Confidence            999999988764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01892 Miro2 Miro2 subfamily

Probab=99.98  E-value=1.1e-30  Score=182.00  Aligned_cols=162  Identities=19%  Similarity=0.218  Sum_probs=136.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      .+.+||+++|.+|||||||+++|+.+.+. ..+.+|.+..+....+..++..+.+.+||++|++.+......+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999998888 78889988777666666777778899999999999888888889999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-c-cHHHHHHHHHcCC-cEEEeccCCCCChHHHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~-~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|+|++++.++..+..|+..+... .+.|+++|+||.|+.+.. . ..+..++++..++ .++++||++|.|++++|+.
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            9999999999999888888765332 479999999999996432 2 2233466677776 4799999999999999999


Q ss_pred             HHHHHhC
Q 029077          167 LARKLAG  173 (199)
Q Consensus       167 i~~~~~~  173 (199)
                      +++.+..
T Consensus       161 l~~~~~~  167 (169)
T cd01892         161 LATAAQY  167 (169)
T ss_pred             HHHHhhC
Confidence            9998763

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01862 Rab7 Rab7 subfamily

Probab=99.98  E-value=1.7e-30  Score=181.44  Aligned_cols=161  Identities=31%  Similarity=0.633  Sum_probs=137.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||++++..+.+...+.++.+.++........+..+.+.+||++|++.+...+..+++++|++|++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999988887777788887777777777888889999999999988888889999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhcC-----CCcEEEEEeCCCCCC-ccc-cHHHHHHHHHcC-CcEEEeccCCCCChHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKN-LQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-----~~p~iiv~~K~D~~~-~~~-~~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~~  165 (199)
                      |+++++++.....|...+.....     +.|+++|+||.|+.+ ... ..+...+++..+ .+++++|+++|.|+++++.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999998889887766543     789999999999974 332 333445666666 7899999999999999999


Q ss_pred             HHHHHHhCC
Q 029077          166 YLARKLAGD  174 (199)
Q Consensus       166 ~i~~~~~~~  174 (199)
                      ++.+.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PLN03118 Rab family protein; Provisional

Probab=99.98  E-value=2.9e-30  Score=185.93  Aligned_cols=166  Identities=31%  Similarity=0.560  Sum_probs=139.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+|+|++|||||||+++|+.+.+ ..+.++.+.++....+..++..+.+.+||++|++.+...+..+++.+|+++
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            4578999999999999999999887765 466788888777777777777899999999999999998999999999999


Q ss_pred             EEEeCCChhhHhcHHH-HHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           91 IMFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~-~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +|||++++++|..+.. |...+....  .+.|+++|+||.|+... ... .+...++...++.++++||++|.|++++|.
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~  170 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE  170 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999875 666555432  46799999999999753 222 344567777889999999999999999999


Q ss_pred             HHHHHHhCCCCC
Q 029077          166 YLARKLAGDPNL  177 (199)
Q Consensus       166 ~i~~~~~~~~~~  177 (199)
                      +|++.+.+.+..
T Consensus       171 ~l~~~~~~~~~~  182 (211)
T PLN03118        171 ELALKIMEVPSL  182 (211)
T ss_pred             HHHHHHHhhhhh
Confidence            999999877643

>cd01863 Rab18 Rab18 subfamily

Probab=99.98  E-value=2.4e-30  Score=178.87  Aligned_cols=157  Identities=35%  Similarity=0.629  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||+++|..+.+.....++.+.++......+++..+.+.+||++|++.+......+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999988877778888888777776777777899999999999988888888899999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      |+++..++..+..|+..+....  .+.|+++|+||.|+..... ..+...++...+++++++|+++|.|++++++.+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            9999999999999999887764  5799999999999985443 334557788889999999999999999999998875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.98  E-value=1.1e-30  Score=179.81  Aligned_cols=150  Identities=23%  Similarity=0.360  Sum_probs=122.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|+.|||||||+++++.+.+...+.++.+ .+ ...+.+++..+.+.+||++|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            5899999999999999999998888776655533 33 34566777788999999999865     34567899999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC---ccccHH-HHHHHHHc-CCcEEEeccCCCCChHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~---~~~~~~-~~~~~~~~-~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |++++.+|+.+..|+..+....  ++.|+++||||.|+..   +.+..+ ..++++.. ++.|++|||++|.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            9999999999999999987764  5789999999999852   333333 34677665 589999999999999999999


Q ss_pred             HHHH
Q 029077          167 LARK  170 (199)
Q Consensus       167 i~~~  170 (199)
                      +++.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            9864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1e-31  Score=180.99  Aligned_cols=195  Identities=78%  Similarity=1.245  Sum_probs=181.3

Q ss_pred             CCCCCCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc
Q 029077            1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (199)
Q Consensus         1 ~~~~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (199)
                      |.+++.+   ...++++++|..|.||||++++++.+.|...+.+|.|.+..+.....+.+.+.+..||++|++.+..+..
T Consensus         1 M~~p~~~---~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd   77 (216)
T KOG0096|consen    1 MTSPPQQ---GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD   77 (216)
T ss_pred             CCCCccc---cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc
Confidence            4455544   7789999999999999999999999999999999999999998887666679999999999999999999


Q ss_pred             ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      .++-++...|++||++.+-.+.++..|...+...+.++|++++|||.|..++....+.+.+.+...+.|+++|++++.|+
T Consensus        78 gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~Nf  157 (216)
T KOG0096|consen   78 GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNF  157 (216)
T ss_pred             ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeeccccccc
Confidence            99999999999999999999999999999999999999999999999999998888888889999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-|.++++.+..+|.+.++..|.+++|+..+|...+.
T Consensus       158 ekPFl~LarKl~G~p~Lefva~paLaPpev~~d~~~~~  195 (216)
T KOG0096|consen  158 ERPFLWLARKLTGDPSLEFVAMPALAPPEVIMDYWLQR  195 (216)
T ss_pred             ccchHHHhhhhcCCCCeEEEeccccCCCeeeccchhhH
Confidence            99999999999999999999999999999988876654

>cd04135 Tc10 TC10 subfamily

Probab=99.98  E-value=3.3e-30  Score=180.45  Aligned_cols=157  Identities=25%  Similarity=0.405  Sum_probs=131.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|+|||||+++|..+.+...+.++.+ +........++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999998888777777765 333445666777889999999999999888889999999999999


Q ss_pred             eCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------c-cHHHHHHHHHcCC-cEEEeccCCC
Q 029077           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISAKSN  157 (199)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~s~~~~  157 (199)
                      |++++.+|+.+. .|...+....++.|+++|+||.|+.+..             . ..+...+++..+. .++++||++|
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  159 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence            999999999886 5888887666789999999999985421             1 1234466777775 6999999999


Q ss_pred             CChHHHHHHHHHHH
Q 029077          158 YNFEKPFLYLARKL  171 (199)
Q Consensus       158 ~~v~~~~~~i~~~~  171 (199)
                      .|++++|..+++++
T Consensus       160 ~gi~~~f~~~~~~~  173 (174)
T cd04135         160 KGLKTVFDEAILAI  173 (174)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=1.4e-31  Score=176.25  Aligned_cols=161  Identities=27%  Similarity=0.555  Sum_probs=142.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEe-cCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      .+|+++||++.+|||+|++.|..+.+.....||.|+++....+.+ .+..+++++|||+|+++|++....|++++-++++
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll   87 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL   87 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence            479999999999999999999999999999999999988776655 4567999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc--CCCc-EEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIP-IVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p-~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |||+++++||+.+..|..+-....  |.++ +++||+|.|+.. +++. ++...++..++..|+++|+++|.|+++.|..
T Consensus        88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m  167 (213)
T KOG0091|consen   88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM  167 (213)
T ss_pred             EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence            999999999999999998876654  4444 468999999986 3443 4556899999999999999999999999999


Q ss_pred             HHHHHhC
Q 029077          167 LARKLAG  173 (199)
Q Consensus       167 i~~~~~~  173 (199)
                      |++.+..
T Consensus       168 laqeIf~  174 (213)
T KOG0091|consen  168 LAQEIFQ  174 (213)
T ss_pred             HHHHHHH
Confidence            9988753

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=1.9e-31  Score=174.82  Aligned_cols=189  Identities=27%  Similarity=0.417  Sum_probs=155.8

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCC
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (199)
                      ..-..-.+||+++|+..+|||||+=|++.+.|......|....+....+.+++....+.+|||+|+++|+.+-..|++.+
T Consensus         7 ~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgS   86 (218)
T KOG0088|consen    7 VDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGS   86 (218)
T ss_pred             ccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCC
Confidence            34445678999999999999999999999999888888877777777777788889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHhcHHHHHHHHHhhcCC-CcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~-~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +++++|||++|+.||+.++.|..+++....+ +-+++||||+|++++ .+. ++....+..-|..|+++||+.+.|+.++
T Consensus        87 nGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el  166 (218)
T KOG0088|consen   87 NGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISEL  166 (218)
T ss_pred             CceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence            9999999999999999999999999988654 678899999999863 333 3556788888999999999999999999


Q ss_pred             HHHHHHHHhCCC-------CCceecCCCCCCcccchhHh
Q 029077          164 FLYLARKLAGDP-------NLHFVESPALAPPEVQIDLA  195 (199)
Q Consensus       164 ~~~i~~~~~~~~-------~~~~~~~p~~~~~~~~~d~~  195 (199)
                      |..+...+.+..       ...-.+.|...+...-+|..
T Consensus       167 Fe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e  205 (218)
T KOG0088|consen  167 FESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNE  205 (218)
T ss_pred             HHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCC
Confidence            999988775432       12233445554444444443

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=7.6e-30  Score=184.63  Aligned_cols=168  Identities=19%  Similarity=0.294  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccccccc-CCcEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-HGQCAII   91 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i~   91 (199)
                      +||+++|++|||||||+++|..+.+. ..+.++.+.+.....+.+++..+.+.+||++|++  ......++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999998888776 6666666656666677777788999999999987  223344556 8999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      |||++++.+|..+..|+..+....  .+.|+++|+||.|+.+. .+.. +...++...+++++++||++|.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999999887754  57999999999998653 3333 3346777778899999999999999999999


Q ss_pred             HHHHhCCCCCceecCC
Q 029077          168 ARKLAGDPNLHFVESP  183 (199)
Q Consensus       168 ~~~~~~~~~~~~~~~p  183 (199)
                      ++.+.........+++
T Consensus       159 ~~~~~~~~~~~~~~~~  174 (221)
T cd04148         159 VRQIRLRRDSKEKNER  174 (221)
T ss_pred             HHHHHhhhccccccCc
Confidence            9999755555445554

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=5.5e-30  Score=187.61  Aligned_cols=158  Identities=29%  Similarity=0.511  Sum_probs=132.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|..|||||||+++|+.+.+...+.+|.+ +.....+.+++..+.+.+||++|++.+...+..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999999888888876 555556677778899999999999988888888889999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhh----------cCCCcEEEEEeCCCCCC-ccccHHH-HHHHH-HcCCcEEEeccCCCCCh
Q 029077           94 DVTARLTYKNVPTWHRDLCRV----------CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHR-KKNLQYYEISAKSNYNF  160 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~----------~~~~p~iiv~~K~D~~~-~~~~~~~-~~~~~-~~~~~~~~~s~~~~~~v  160 (199)
                      |+++.++|+.+..|...+...          ..+.|+++|+||.|+.+ +.+..+. .+++. ..++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998888653          24789999999999975 3333333 34443 23578999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029077          161 EKPFLYLARKLA  172 (199)
Q Consensus       161 ~~~~~~i~~~~~  172 (199)
                      +++|.+|++...
T Consensus       160 ~elf~~L~~~~~  171 (247)
T cd04143         160 DEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998663

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=3.4e-30  Score=181.17  Aligned_cols=159  Identities=22%  Similarity=0.292  Sum_probs=125.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ++.+||+++|..|||||||++++..+.+. .+.||.|......    +...+.+.+||++|++.++..+..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~~----~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEEE----EECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            55689999999999999999998777665 4667877665433    235688999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHHHc-----CCcEEEeccCCCCChHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~~  163 (199)
                      +|+|+++..++..+..++..+...  .++.|+++++||.|+.+.....+........     .+.++++||++|.|+.++
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~  169 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence            999999999998887777666432  3579999999999998754332222222111     123568999999999999


Q ss_pred             HHHHHHHHhCC
Q 029077          164 FLYLARKLAGD  174 (199)
Q Consensus       164 ~~~i~~~~~~~  174 (199)
                      |++|++.+..+
T Consensus       170 ~~~l~~~~~~~  180 (181)
T PLN00223        170 LDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHhhc
Confidence            99999988754

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=3.9e-32  Score=178.13  Aligned_cols=159  Identities=33%  Similarity=0.612  Sum_probs=141.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec---------CcEEEEEEEeCCCccccccccccccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---------CGKIRFYCWDTAGQEKFGGLRDGYYI   84 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~g~~~~~~~~~~~~~   84 (199)
                      +|.+.+|++|+||||++.++..+.|......|.|+++....+.++         +..+.+++|||+|+++|+++..++++
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR   89 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR   89 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence            577889999999999999999999999999999999998887663         23588999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccH--HHHHHHHHcCCcEEEeccCCCCCh
Q 029077           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYEISAKSNYNF  160 (199)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      .+-+++++||+++..||-++..|+..+...  +.+..++++|||.|+++..+..  +..+++.+.+++||++||-+|.|+
T Consensus        90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv  169 (219)
T KOG0081|consen   90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNV  169 (219)
T ss_pred             hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCH
Confidence            999999999999999999999999988754  5788899999999999855444  345899999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 029077          161 EKPFLYLARKLA  172 (199)
Q Consensus       161 ~~~~~~i~~~~~  172 (199)
                      ++..+.+...+.
T Consensus       170 ~kave~LldlvM  181 (219)
T KOG0081|consen  170 EKAVELLLDLVM  181 (219)
T ss_pred             HHHHHHHHHHHH
Confidence            988877776654

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=4.7e-30  Score=178.84  Aligned_cols=159  Identities=23%  Similarity=0.346  Sum_probs=127.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (199)
                      ||+++|.+|||||||+++|..+.+. .+.+|.|......    +...+.+.+||++|+..+...+..+++.+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~~~----~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVETV----EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEEEE----EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            6899999999999999998877654 3677777655432    3356899999999999888888889999999999999


Q ss_pred             CCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHHHc------CCcEEEeccCCCCChHHHHHH
Q 029077           95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~------~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++++.++.++..|+..+...  ..+.|+++|+||.|+.+.....+...++...      .+.++++||++|.|++++|.+
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~  155 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW  155 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence            99999999998888887653  2468999999999997653333333433322      236889999999999999999


Q ss_pred             HHHHHhCCCCCc
Q 029077          167 LARKLAGDPNLH  178 (199)
Q Consensus       167 i~~~~~~~~~~~  178 (199)
                      |++.+.+.+.+.
T Consensus       156 l~~~~~~~~~~~  167 (169)
T cd04158         156 LSRQLVAAGVLD  167 (169)
T ss_pred             HHHHHhhccccc
Confidence            999988877653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=4.9e-30  Score=178.11  Aligned_cols=157  Identities=22%  Similarity=0.400  Sum_probs=128.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-ccccccccccCCcEEEEEE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~   93 (199)
                      ||+++|++|||||||+++++.+.+...+.++.+... ......++..+.+.+||++|+.. .......+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999988877777777665333 34456677788999999999885 3344566788999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCC-CChHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSN-YNFEKPFLYL  167 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~-~~v~~~~~~i  167 (199)
                      |++++++|+.+..|+..+....   .+.|+++|+||+|+.+ +.... +...+++..+.+|+++|+++| .|++++|..+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988887753   4799999999999864 33333 345778888899999999999 4999999999


Q ss_pred             HHHHh
Q 029077          168 ARKLA  172 (199)
Q Consensus       168 ~~~~~  172 (199)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04123 Rab21 Rab21 subfamily

Probab=99.97  E-value=1.8e-29  Score=174.44  Aligned_cols=158  Identities=31%  Similarity=0.564  Sum_probs=133.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|+|||||+++++.+.+...+.++.+.+.........+..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999988776666666666666656666677789999999999988888888899999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      |+++.+++..+..|+..+..... ++|+++|+||.|+... .... +...+.+..+..++++|++++.|++++++++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999988877653 6899999999999753 3333 3345677778899999999999999999999886


Q ss_pred             H
Q 029077          171 L  171 (199)
Q Consensus       171 ~  171 (199)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=3e-30  Score=179.56  Aligned_cols=155  Identities=19%  Similarity=0.282  Sum_probs=122.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      .++.+||+++|.+|||||||+++|..+.+. .+.+|.|.+.....    ...+.+.+||++|+++++..+..+++++|++
T Consensus         6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~i   80 (168)
T cd04149           6 GNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL   80 (168)
T ss_pred             CCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence            356799999999999999999998776664 45677776654332    2568899999999999988888999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHH-----HcCCcEEEeccCCCCChHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~  162 (199)
                      |+|||+++..++.++..|+..+...  ..+.|+++|+||+|+.+.....+....+.     .....++++||++|.|+++
T Consensus        81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          81 IFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            9999999999998888877666543  35799999999999976433333333221     1234689999999999999


Q ss_pred             HHHHHHH
Q 029077          163 PFLYLAR  169 (199)
Q Consensus       163 ~~~~i~~  169 (199)
                      +|.+|++
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=1.7e-29  Score=176.93  Aligned_cols=158  Identities=30%  Similarity=0.508  Sum_probs=130.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      +.||+++|++|||||||+++|..+.+...+.++.+.... ....+++..+.+.+||++|++.+...+..++.++|++++|
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   79 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence            468999999999999999999988888878888765443 3456677788999999999999888887888999999999


Q ss_pred             EeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCccc--------------cHHHHHHHHHcC-CcEEEeccCC
Q 029077           93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKS  156 (199)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--------------~~~~~~~~~~~~-~~~~~~s~~~  156 (199)
                      ||+++.++++.+. .|...+....++.|+++|+||.|+.+...              ..+...+++..+ ..+++|||++
T Consensus        80 ~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          80 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            9999999998875 58888877667899999999999864211              123345566555 4799999999


Q ss_pred             CCChHHHHHHHHHHH
Q 029077          157 NYNFEKPFLYLARKL  171 (199)
Q Consensus       157 ~~~v~~~~~~i~~~~  171 (199)
                      |.|++++|.++++++
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00154 Rab Rab family

Probab=99.97  E-value=1.3e-29  Score=174.26  Aligned_cols=155  Identities=36%  Similarity=0.717  Sum_probs=137.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||++++..+.+...+.++.+.+.........+..+.+.+||+||+..+......+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999988888888889888888888888878899999999999988888899999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCC-C-ccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-N-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~-~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      |+++++++..+..|+..+.... ...|+++++||.|+. . .....+...++...+.+++++|+.++.|+++++.+|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            9999999999999999888876 679999999999996 3 3334445567777889999999999999999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=2.3e-29  Score=175.23  Aligned_cols=159  Identities=27%  Similarity=0.526  Sum_probs=133.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|.+|||||||+++|..+.+...+.++.+.. .......++..+.+.+||++|++.+...+..+++.++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            3799999999999999999999888877777777643 344555677778999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcC-CcEEEeccCCCCChHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~-~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      ||++++++++.+..|...+....  .+.|+++++||.|+.... .. .+...+++..+ ++++++||++|.|+.++|.++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999988887642  579999999999996532 22 23446666666 789999999999999999999


Q ss_pred             HHHHh
Q 029077          168 ARKLA  172 (199)
Q Consensus       168 ~~~~~  172 (199)
                      ++.+.
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            97653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04129 Rho2 Rho2 subfamily

Probab=99.97  E-value=4.9e-29  Score=176.38  Aligned_cols=161  Identities=30%  Similarity=0.468  Sum_probs=131.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      +.||+++|++|+|||||++++..+.+...+.++.+..+. .....++..+.+.+||++|++.+......++..+++++++
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            469999999999999999998878887766666553332 3455566778899999999988877776778999999999


Q ss_pred             EeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-----------c-cHHHHHHHHHcCC-cEEEeccCCCC
Q 029077           93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------V-KAKQVTFHRKKNL-QYYEISAKSNY  158 (199)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-----------~-~~~~~~~~~~~~~-~~~~~s~~~~~  158 (199)
                      ||+++.++++.+. .|+..+....++.|+++|+||.|+.+..           . ..+...+++..+. .++++||++|.
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            9999999999986 5999998777889999999999985411           1 2344567777775 79999999999


Q ss_pred             ChHHHHHHHHHHHhCC
Q 029077          159 NFEKPFLYLARKLAGD  174 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~~  174 (199)
                      |++++|+++++.+...
T Consensus       160 ~v~~~f~~l~~~~~~~  175 (187)
T cd04129         160 GVDDVFEAATRAALLV  175 (187)
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999877543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=1.9e-29  Score=176.67  Aligned_cols=157  Identities=24%  Similarity=0.339  Sum_probs=123.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      +..+||+++|++|||||||++++..+.+. .+.||.|........    ..+.+.+||++|+..+...+..+++++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVTY----KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            45799999999999999999998777764 466787766543332    4688999999999999888899999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +|+|++++.++.....|+..+...  .++.|+++|+||.|+.+.....+.....     +...+.++++||++|.|++++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  165 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG  165 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence            999999999999888887776543  3578999999999997643222222211     122334778999999999999


Q ss_pred             HHHHHHHHh
Q 029077          164 FLYLARKLA  172 (199)
Q Consensus       164 ~~~i~~~~~  172 (199)
                      |++|.+.+.
T Consensus       166 ~~~l~~~~~  174 (175)
T smart00177      166 LTWLSNNLK  174 (175)
T ss_pred             HHHHHHHhc
Confidence            999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=6.6e-29  Score=173.01  Aligned_cols=160  Identities=34%  Similarity=0.614  Sum_probs=135.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      ...+|+++|++|||||||++++..+.+...+.++.+.+.........+..+.+.+||++|+..+......++..+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999988787777777888877777777777778899999999999888888889999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCC-ccccHH-HHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      |||+++..++..+..|+..+..... +.|+++|+||.|+.+ +....+ ...+.+.....++++|+++|.|++++|.+|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  165 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA  165 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999988877653 689999999999874 333333 3455666668899999999999999999998


Q ss_pred             HHH
Q 029077          169 RKL  171 (199)
Q Consensus       169 ~~~  171 (199)
                      +.+
T Consensus       166 ~~~  168 (169)
T cd04114         166 CRL  168 (169)
T ss_pred             HHh
Confidence            764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.97  E-value=5e-29  Score=172.66  Aligned_cols=158  Identities=31%  Similarity=0.579  Sum_probs=133.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||++++..+.+...+.++.+.. .......++..+.+.+||++|+..+...+..+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999999999999888777776666533 3344556777899999999999999999999999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC-ccc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      |++++.++..+..|...+....  .+.|+++|+||+|+.+ ... ..+...++...+++++++|+++|.|++++|..+++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999988887763  5799999999999976 323 33445677778899999999999999999999998


Q ss_pred             HHh
Q 029077          170 KLA  172 (199)
Q Consensus       170 ~~~  172 (199)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            775

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=1.5e-29  Score=174.49  Aligned_cols=151  Identities=24%  Similarity=0.340  Sum_probs=118.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|..|||||||++++..+.+. .+.||.|.......    ...+.+.+||++|++.+...+..+++++|++++|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999998777775 46777776543322    25688999999999999888899999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |+++..++..+..|+..+...  ..+.|+++++||.|+.+.....+.....     ....+.++++||++|.|++++|++
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~  155 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW  155 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence            999999999888877666432  2468999999999997643222222211     122345789999999999999998


Q ss_pred             HHH
Q 029077          167 LAR  169 (199)
Q Consensus       167 i~~  169 (199)
                      |++
T Consensus       156 l~~  158 (159)
T cd04150         156 LSN  158 (159)
T ss_pred             Hhc
Confidence            864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=3.5e-29  Score=176.26  Aligned_cols=159  Identities=21%  Similarity=0.316  Sum_probs=123.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+++|++|||||||++++..+.+.. +.+|.|.......    ...+.+.+||++|++.++..+..+++.+|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETVE----YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            456899999999999999999987777754 5677776554332    25689999999999999988899999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +|+|++++.++.....++..+...  ..+.|+++|+||.|+.+.....+.....     ....+.++++||++|.|++++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~  169 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG  169 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence            999999999998887776665432  3578999999999997543222222211     112234678999999999999


Q ss_pred             HHHHHHHHhCC
Q 029077          164 FLYLARKLAGD  174 (199)
Q Consensus       164 ~~~i~~~~~~~  174 (199)
                      |++|.+.+..+
T Consensus       170 ~~~l~~~i~~~  180 (182)
T PTZ00133        170 LDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHh
Confidence            99999887654

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=4.9e-29  Score=175.78  Aligned_cols=163  Identities=21%  Similarity=0.272  Sum_probs=128.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEe-cCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      +.+||+++|++|||||||++++..+.+... .+|.|.+........ ++..+.+.+||++|++.++..+..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            458999999999999999999887776543 567776666655544 335789999999999988888899999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHHH------HcCCcEEEeccCCCCChHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~v~~  162 (199)
                      +|+|+++..++..+..|+..+....  .+.|+++|+||+|+.+.....+...+..      ...++++++||++|.|+++
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  160 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE  160 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence            9999999998888888887776543  4799999999999875322222222221      1124588999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 029077          163 PFLYLARKLAGDP  175 (199)
Q Consensus       163 ~~~~i~~~~~~~~  175 (199)
                      ++.+|++.+.+..
T Consensus       161 l~~~l~~~l~~~~  173 (183)
T cd04152         161 GLEKLYEMILKRR  173 (183)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999886433

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=4.1e-29  Score=174.73  Aligned_cols=157  Identities=18%  Similarity=0.301  Sum_probs=122.8

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      .+.+..+||+++|++|||||||+++|... ....+.+|.|........    ..+.+.+||++|++.++..+..+++.+|
T Consensus         9 ~~~~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~~~~----~~~~l~l~D~~G~~~~~~~~~~~~~~~d   83 (173)
T cd04154           9 KLKEREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKTLEY----EGYKLNIWDVGGQKTLRPYWRNYFESTD   83 (173)
T ss_pred             hcCCCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence            34456789999999999999999998765 334566777754443333    3578999999999988888888999999


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHH-----HcCCcEEEeccCCCCCh
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNF  160 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v  160 (199)
                      ++++|+|++++.++.....|+..+...  ..+.|+++|+||+|+.+.....+...+..     ...++++++||++|.|+
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  163 (173)
T cd04154          84 ALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGL  163 (173)
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence            999999999999998888887776542  36899999999999976443333333332     34568999999999999


Q ss_pred             HHHHHHHHH
Q 029077          161 EKPFLYLAR  169 (199)
Q Consensus       161 ~~~~~~i~~  169 (199)
                      +++|.+++.
T Consensus       164 ~~l~~~l~~  172 (173)
T cd04154         164 LQGIDWLVD  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999998863

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd00157 Rho Rho (Ras homology) family

Probab=99.97  E-value=1.7e-28  Score=171.14  Aligned_cols=155  Identities=29%  Similarity=0.519  Sum_probs=127.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||+++|..+.+...+.++.. +.........+..+.+.+||++|++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999998887666666654 333444556677889999999999988888888889999999999


Q ss_pred             eCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCccc-------------cHHHHHHHHHcCC-cEEEeccCCCC
Q 029077           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KAKQVTFHRKKNL-QYYEISAKSNY  158 (199)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-------------~~~~~~~~~~~~~-~~~~~s~~~~~  158 (199)
                      |++++.++.... .|+..+.....+.|+++|+||.|+.+...             ..+...++...+. +++++|+++|.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            999999987755 58888887777899999999999865332             2234466667776 89999999999


Q ss_pred             ChHHHHHHHHH
Q 029077          159 NFEKPFLYLAR  169 (199)
Q Consensus       159 ~v~~~~~~i~~  169 (199)
                      |+++++.+|++
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=1.7e-29  Score=175.09  Aligned_cols=150  Identities=15%  Similarity=0.155  Sum_probs=124.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 029077           16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV   95 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (199)
                      |+++|++|||||||+++|..+.+...+.+|.|...    ..++...+.+.+||++|++.++..+..+++++|++++|+|+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            78999999999999999988878777888887643    22345678999999999999999999999999999999999


Q ss_pred             CChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH------HHHHHHHcCCcEEEeccCC------CCChHHH
Q 029077           96 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKS------NYNFEKP  163 (199)
Q Consensus        96 ~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~------~~~~~~~~~~~~~~~s~~~------~~~v~~~  163 (199)
                      +++.++.....|+..+....+++|+++|+||.|+.+.....+      ...+++..++.++++||++      ++|++++
T Consensus        78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~  157 (164)
T cd04162          78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL  157 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence            999999988888888866557899999999999876433221      2345566678899998888      9999999


Q ss_pred             HHHHHH
Q 029077          164 FLYLAR  169 (199)
Q Consensus       164 ~~~i~~  169 (199)
                      |..++.
T Consensus       158 ~~~~~~  163 (164)
T cd04162         158 LSQLIN  163 (164)
T ss_pred             HHHHhc
Confidence            988763

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01893 Miro1 Miro1 subfamily

Probab=99.97  E-value=1.9e-28  Score=170.31  Aligned_cols=158  Identities=18%  Similarity=0.294  Sum_probs=123.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|..|||||||+++|..+.+...+.++..  .......+.+..+.+.+||++|...+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            4899999999999999999998888665443322  22333445667889999999999887777777789999999999


Q ss_pred             eCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcccc---HHH-HHHHHHc-C-CcEEEeccCCCCChHHHHHH
Q 029077           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQ-VTFHRKK-N-LQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        94 d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~---~~~-~~~~~~~-~-~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |++++.+++.+. .|+..+.....+.|+++|+||+|+.+....   .+. ..++... . ..++++||++|.|++++|..
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~  158 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY  158 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence            999999999875 688888776678999999999999764432   122 2223322 2 37999999999999999999


Q ss_pred             HHHHHhC
Q 029077          167 LARKLAG  173 (199)
Q Consensus       167 i~~~~~~  173 (199)
                      +.+.+.+
T Consensus       159 ~~~~~~~  165 (166)
T cd01893         159 AQKAVLH  165 (166)
T ss_pred             HHHHhcC
Confidence            9988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.97  E-value=1.8e-29  Score=174.52  Aligned_cols=165  Identities=27%  Similarity=0.470  Sum_probs=146.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ...+|++++|+.++|||+|+-.+..+.|+..|.||.. +.+...+.++ ++.+.+.+|||+|++.|..++...+.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            4578999999999999999999899999999999997 8888888885 9999999999999999999887889999999


Q ss_pred             EEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc--------------ccHHHHHHHHHcC-CcEEEec
Q 029077           90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEIS  153 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~--------------~~~~~~~~~~~~~-~~~~~~s  153 (199)
                      ++||++.++.||+++. +|++++.+.+++.|+|+||+|.|+.+..              ...+...+++..| ..|+|||
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            9999999999999855 6999999999999999999999998421              1234456778877 5699999


Q ss_pred             cCCCCChHHHHHHHHHHHhCCCC
Q 029077          154 AKSNYNFEKPFLYLARKLAGDPN  176 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~~~~  176 (199)
                      |++..|++++|+..+++....+.
T Consensus       161 a~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhcccc
Confidence            99999999999999999987665

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.7e-29  Score=161.95  Aligned_cols=167  Identities=32%  Similarity=0.508  Sum_probs=151.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      -.+|-+++|+-|+|||+|+.+|....|....+.|.|+++....+.+.+..+++++||++|+++|+...+.+++.+.+.++
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccc--cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      |||++.+..+..+..|+..-+... ++..++++|||.|++....  .++..+++.+.|+.+.++|+++|.++++.|-..+
T Consensus        90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a  169 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA  169 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence            999999999999999998877664 7888899999999987433  3456689999999999999999999999999999


Q ss_pred             HHHhCCCCCc
Q 029077          169 RKLAGDPNLH  178 (199)
Q Consensus       169 ~~~~~~~~~~  178 (199)
                      +.+.++-.--
T Consensus       170 kkiyqniqdg  179 (215)
T KOG0097|consen  170 KKIYQNIQDG  179 (215)
T ss_pred             HHHHHhhhcC
Confidence            9988665443

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=2.4e-28  Score=173.66  Aligned_cols=147  Identities=19%  Similarity=0.312  Sum_probs=124.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-----CcEEEEEEEeCCCcccccccccccccCCcE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-----CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      +||+++|..|||||||+++|+.+.+...+.+|.|.++....+.+.     +..+.+.+||++|++.++..+..+++++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888999977766655553     467899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhc--------------------CCCcEEEEEeCCCCCCcc-ccH-----HHHHHH
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVC--------------------ENIPIVLCGNKVDVKNRQ-VKA-----KQVTFH  142 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~--------------------~~~p~iiv~~K~D~~~~~-~~~-----~~~~~~  142 (199)
                      +|+|||++++.+|+.+..|+..+....                    .++|+++||||.|+.++. ...     ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999987631                    368999999999996542 222     233678


Q ss_pred             HHcCCcEEEeccCCCCCh
Q 029077          143 RKKNLQYYEISAKSNYNF  160 (199)
Q Consensus       143 ~~~~~~~~~~s~~~~~~v  160 (199)
                      .+.+++.++.++..+..+
T Consensus       161 ~~~~~~~i~~~c~~~~~~  178 (202)
T cd04102         161 EQGNAEEINLNCTNGRLL  178 (202)
T ss_pred             HhcCCceEEEecCCcccc
Confidence            889999999888866544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00876 Ras Ras family

Probab=99.96  E-value=2.9e-28  Score=168.11  Aligned_cols=156  Identities=33%  Similarity=0.593  Sum_probs=131.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (199)
                      ||+++|++|||||||+++++.+.+...+.++.+ +........++..+.+.+||++|...+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999988777777777766 4455555666667899999999999888888889999999999999


Q ss_pred             CCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           95 VTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      +++.+++..+..|...+.....  ..|+++|+||.|+.+ .... .+...+++..+.+++++|+++|.|+++++.+|++.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999888877654  899999999999976 3333 34456677777899999999999999999999875


Q ss_pred             H
Q 029077          171 L  171 (199)
Q Consensus       171 ~  171 (199)
                      +
T Consensus       160 i  160 (160)
T cd00876         160 I  160 (160)
T ss_pred             C
Confidence            3

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.96  E-value=4.3e-28  Score=173.02  Aligned_cols=160  Identities=28%  Similarity=0.396  Sum_probs=130.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (199)
                      ||+++|.+|||||||+++|+.+.+...+.++.+ +.....+.+.+..+.+.+||++|+..+...+..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999998888777766664 3444556667777899999999999888888888999999999999


Q ss_pred             CCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc--cccHH-HHHHHH-HcCCcEEEeccCCCCChHHHHHHHH
Q 029077           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKAK-QVTFHR-KKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~--~~~~~-~~~~~~-~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      +++..+++.+..|+..+....  .++|+++|+||+|+...  ....+ ...... ..+..++++||++|.|++++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            999999999999988887764  47999999999998652  22222 222222 3457899999999999999999999


Q ss_pred             HHHhCCC
Q 029077          169 RKLAGDP  175 (199)
Q Consensus       169 ~~~~~~~  175 (199)
                      +.+...+
T Consensus       160 ~~~~~~~  166 (198)
T cd04147         160 RQANLPY  166 (198)
T ss_pred             HHhhccc
Confidence            9876433

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=1.2e-28  Score=170.50  Aligned_cols=151  Identities=24%  Similarity=0.385  Sum_probs=117.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-CCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +|+++|++|||||||+++|..+. +...+.+|.|......    ....+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            58999999999999999988765 3556778877554332    235688999999999999888999999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhh----cCCCcEEEEEeCCCCCCccccHHHHHHHH-----HcCCcEEEeccCCCCChHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~----~~~~p~iiv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      |++++.++.....|+..+...    ..++|+++|+||+|+.+.....+......     .....++++||++|.|++++|
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~  156 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV  156 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence            999999998888887776543    14799999999999976432222211111     123458999999999999999


Q ss_pred             HHHHH
Q 029077          165 LYLAR  169 (199)
Q Consensus       165 ~~i~~  169 (199)
                      ++|.+
T Consensus       157 ~~l~~  161 (162)
T cd04157         157 QWLQA  161 (162)
T ss_pred             HHHhc
Confidence            99864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=3.3e-30  Score=164.42  Aligned_cols=156  Identities=28%  Similarity=0.564  Sum_probs=139.7

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC
Q 029077           18 IVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT   96 (199)
Q Consensus        18 viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   96 (199)
                      ++|++++|||+|+-++..+.|- ....+|.|+++....+.+++..+++++|||+|+++|++....|++.+|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            6899999999999887776663 567789999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077           97 ARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus        97 ~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      +..||+++..|+.++.++. ..+.+.++|||+|+.. +.+. .+...+++..+++++++|+++|.|++..|-.|++.+..
T Consensus        82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence            9999999999999999886 4577889999999965 4443 34568899999999999999999999999999987753

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.96  E-value=5.1e-28  Score=170.78  Aligned_cols=161  Identities=32%  Similarity=0.567  Sum_probs=145.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      ..+||+++|.+|+|||+|..+|+.+.|...|.||.+ +.+.....+++..+.+.++||+|++.+......++.+++++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            568999999999999999999999999999999998 7777788888889999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC-ccccHH-HHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      ||+++++.||+.+..++..+.+..  .++|+++||||.|+.. +.+..+ ...++..++++|+|+||+...+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            999999999999999999994432  4689999999999987 555544 468899999999999999999999999999


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            998876

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.96  E-value=1.6e-27  Score=167.66  Aligned_cols=162  Identities=27%  Similarity=0.387  Sum_probs=132.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      .||+++|++|||||||++++..+.+...+.++.+... ......++..+.+.+||++|++.+...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998877766666654333 234455666788999999999998888888999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      |+++..+++.+..|...+.+..  .+.|+++|+||+|+... .... +...+++..+.+++++|++++.|+.+++.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999888777653  46899999999998653 2222 334566777789999999999999999999999


Q ss_pred             HHhCCCC
Q 029077          170 KLAGDPN  176 (199)
Q Consensus       170 ~~~~~~~  176 (199)
                      .+...+.
T Consensus       161 ~~~~~~~  167 (180)
T cd04137         161 EIEKVEN  167 (180)
T ss_pred             HHHHhcC
Confidence            8876554

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=7.9e-28  Score=168.36  Aligned_cols=153  Identities=25%  Similarity=0.367  Sum_probs=119.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      ..+||+++|++|+|||||++++..+.+.. +.++.+.+......    ..+.+.+||++|+..+...+..+++.+|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~~----~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIVY----KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEEE----CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999988777654 56677755443322    46889999999999888888888999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      |+|+++++++.....++..+...  ..+.|+++++||.|+.+.....+.....     +...++++++||++|.|++++|
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~  168 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL  168 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence            99999998888777766666443  2579999999999997643222221111     2234568999999999999999


Q ss_pred             HHHHH
Q 029077          165 LYLAR  169 (199)
Q Consensus       165 ~~i~~  169 (199)
                      ++|++
T Consensus       169 ~~l~~  173 (174)
T cd04153         169 DWIAS  173 (174)
T ss_pred             HHHhc
Confidence            99875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=2.8e-27  Score=165.43  Aligned_cols=157  Identities=24%  Similarity=0.427  Sum_probs=126.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ..+.+||+++|+.|||||||++++..+.. ....||.|........    .++.+.+||.+|+..++..+..++.+++++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~-~~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEI-SETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSE-EEEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccc-cccCcccccccceeee----CcEEEEEEeccccccccccceeecccccee
Confidence            36789999999999999999999775543 3467788877666555    568899999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHH------HcCCcEEEeccCCCCChH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFE  161 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~v~  161 (199)
                      |+|+|+++.+.+.+....+..+...  ..++|+++++||.|+.+.....+......      ...+.++.||+.+|.|+.
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~  165 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVD  165 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHH
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHH
Confidence            9999999998888877777766553  35899999999999987544333332221      234558999999999999


Q ss_pred             HHHHHHHHHH
Q 029077          162 KPFLYLARKL  171 (199)
Q Consensus       162 ~~~~~i~~~~  171 (199)
                      +.++||.+.+
T Consensus       166 e~l~WL~~~~  175 (175)
T PF00025_consen  166 EGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcC
Confidence            9999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=1.8e-27  Score=168.86  Aligned_cols=156  Identities=19%  Similarity=0.306  Sum_probs=120.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+..||+++|++|||||||++++..+.+ ..+.+|.+.......  +  ....+.+||+||+..+...+..+++.+++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~~~~i~--~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPTSEELT--I--GNIKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcceEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            5679999999999999999999876665 345566654433322  2  3478899999999888887888899999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHHHH----------------cCCcEEEe
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRK----------------KNLQYYEI  152 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~~~----------------~~~~~~~~  152 (199)
                      +|+|+++..++.....|+..+....  .+.|+++++||.|+.......+.......                ....+++|
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC  171 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence            9999999988888777777766532  57999999999999753333333333321                22468999


Q ss_pred             ccCCCCChHHHHHHHHHHH
Q 029077          153 SAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~  171 (199)
                      ||++|.|++++|.+|++.+
T Consensus       172 Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         172 SVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EecCCCChHHHHHHHHhhC
Confidence            9999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=1.4e-27  Score=166.09  Aligned_cols=150  Identities=24%  Similarity=0.304  Sum_probs=119.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (199)
                      +|+++|++|||||||++++..+ +...+.+|.|.......    ...+.+.+||++|+..++..+..+++++|++++|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKLR----LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEEE----ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999997755 66778888886644332    256889999999999998888999999999999999


Q ss_pred             CCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHH------HHHHHc--CCcEEEeccCCC------C
Q 029077           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKK--NLQYYEISAKSN------Y  158 (199)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~------~~~~~~--~~~~~~~s~~~~------~  158 (199)
                      +++..++..+..|+..+....  .++|+++|+||.|+.+.....+..      .+++..  .+.+++|||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            999999999999988876543  578999999999997754322222      223222  346788999998      8


Q ss_pred             ChHHHHHHHHH
Q 029077          159 NFEKPFLYLAR  169 (199)
Q Consensus       159 ~v~~~~~~i~~  169 (199)
                      |+.+.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=3.4e-27  Score=164.07  Aligned_cols=151  Identities=24%  Similarity=0.399  Sum_probs=115.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC------CCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      +|+++|++|||||||++++.....      ...+.+|.+........    ....+.+||+||+..+...+..++..+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV----GNARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE----CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999764321      23345555555443332    36789999999999988888889999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHHH-------cCCcEEEeccCCCCC
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KNLQYYEISAKSNYN  159 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~  159 (199)
                      +++|+|+++..++.....|+..+.+.  ..+.|+++++||+|+.+.....+...+...       ...+++++||++|.|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  156 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG  156 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence            99999999998888888887776553  257999999999998765433333333221       245799999999999


Q ss_pred             hHHHHHHHHH
Q 029077          160 FEKPFLYLAR  169 (199)
Q Consensus       160 v~~~~~~i~~  169 (199)
                      +++++++|++
T Consensus       157 v~e~~~~l~~  166 (167)
T cd04160         157 VREGIEWLVE  166 (167)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=4.9e-27  Score=162.18  Aligned_cols=151  Identities=19%  Similarity=0.317  Sum_probs=116.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (199)
                      +|+++|++|||||||+++|..+.+.. ..+|.+.+......   ...+.+.+||++|+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~~---~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQL---EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEEe---CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999988777653 45666655433322   246889999999999888888888999999999999


Q ss_pred             CCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHH------HHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVT------FHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +++..++.....|+..+....  .+.|+++|+||.|+.+.....+...      ++...+.+++++||++|.|++++|++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~  156 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK  156 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence            999988888888777765432  5899999999999965322222211      12223456899999999999999998


Q ss_pred             HHH
Q 029077          167 LAR  169 (199)
Q Consensus       167 i~~  169 (199)
                      |++
T Consensus       157 i~~  159 (160)
T cd04156         157 LAS  159 (160)
T ss_pred             Hhc
Confidence            864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=5e-27  Score=161.86  Aligned_cols=150  Identities=21%  Similarity=0.324  Sum_probs=113.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (199)
                      ||+++|++|||||||++++..+.+. .+.++.+.+....    +...+.+.+||++|+..++..+..++..+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVETV----TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEEE----EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            6899999999999999998766654 3456666554332    2356889999999999988888899999999999999


Q ss_pred             CCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHHHHHH
Q 029077           95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      ++++.++.....++..+.+.  ..+.|+++|+||+|+.+.....+.....     ...+.+++++||++|.|++++|++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  155 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL  155 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence            99988877666655544332  2579999999999997543222221111     1123469999999999999999998


Q ss_pred             HH
Q 029077          168 AR  169 (199)
Q Consensus       168 ~~  169 (199)
                      ++
T Consensus       156 ~~  157 (158)
T cd04151         156 VN  157 (158)
T ss_pred             hc
Confidence            75

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=1.4e-26  Score=172.25  Aligned_cols=140  Identities=21%  Similarity=0.390  Sum_probs=118.7

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-------------CcEEEEEEEeCCCccc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-------------CGKIRFYCWDTAGQEK   74 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~   74 (199)
                      ..+...+||+++|..|||||||+++|+.+.+...+.+|.|.++....+.++             +..+.+.+||++|++.
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            445778999999999999999999999998988889999988766655553             2468899999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-------------CCCcEEEEEeCCCCCCcc--------
Q 029077           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKNRQ--------  133 (199)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-------------~~~p~iiv~~K~D~~~~~--------  133 (199)
                      ++..+..++++++++|+|||+++..+|..+..|+..+....             .++|+++||||+|+.+..        
T Consensus        96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~  175 (334)
T PLN00023         96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN  175 (334)
T ss_pred             hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence            99999999999999999999999999999999999998753             258999999999996532        


Q ss_pred             ccHHHHHHHHHcCC
Q 029077          134 VKAKQVTFHRKKNL  147 (199)
Q Consensus       134 ~~~~~~~~~~~~~~  147 (199)
                      ...+..++++..++
T Consensus       176 ~~e~a~~~A~~~g~  189 (334)
T PLN00023        176 LVDAARQWVEKQGL  189 (334)
T ss_pred             cHHHHHHHHHHcCC
Confidence            13445688888774

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=1.6e-26  Score=159.32  Aligned_cols=150  Identities=23%  Similarity=0.373  Sum_probs=119.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (199)
                      ||+++|.+|||||||++++..+. ...+.++.+.......+    ..+.+.+||+||+..+...+..++..+|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999987766 44566677665544433    46789999999999988888889999999999999


Q ss_pred             CCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHHHHHH
Q 029077           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      ++++.++.....|+..+....  .+.|+++|+||+|+.......+.....     .....+++++|+++|.|++++|++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l  155 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL  155 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence            999999988888877766543  579999999999997644322222222     2234579999999999999999988


Q ss_pred             HH
Q 029077          168 AR  169 (199)
Q Consensus       168 ~~  169 (199)
                      ..
T Consensus       156 ~~  157 (158)
T cd00878         156 LQ  157 (158)
T ss_pred             hh
Confidence            64

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=2.3e-26  Score=162.25  Aligned_cols=155  Identities=17%  Similarity=0.282  Sum_probs=118.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.++|+++|.+|||||||++++..+.+. .+.+|.+.+......    .++.+.+||++|+..++..+..++.++|+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEELAI----GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            44599999999999999999998866543 345565544333322    4578999999999988888889999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH---H---------HcCCcEEEeccCC
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH---R---------KKNLQYYEISAKS  156 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~---~---------~~~~~~~~~s~~~  156 (199)
                      +|+|++++.++.....++..+.+.  ..++|+++|+||.|+.......+.....   .         .....+++|||++
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~  169 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR  169 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence            999999998888888777766543  2579999999999987543333222211   1         0233589999999


Q ss_pred             CCChHHHHHHHHHH
Q 029077          157 NYNFEKPFLYLARK  170 (199)
Q Consensus       157 ~~~v~~~~~~i~~~  170 (199)
                      |.|+++++++|.+.
T Consensus       170 ~~g~~~~~~wl~~~  183 (184)
T smart00178      170 RMGYGEGFKWLSQY  183 (184)
T ss_pred             CCChHHHHHHHHhh
Confidence            99999999999765

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=7.6e-26  Score=155.59  Aligned_cols=150  Identities=24%  Similarity=0.421  Sum_probs=119.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeC
Q 029077           16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV   95 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (199)
                      |+++|++|||||||++++..+.+...+.++.+........    ..+.+.+||++|+..++..+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTK----GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEE----CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7999999999999999998888888888888766554322    347899999999999888888999999999999999


Q ss_pred             CChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           96 TARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        96 ~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      ++..++.....|+..+...  ..++|+++|+||.|+.+.....+.....     .....+++++|+++|.|+++++++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  157 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI  157 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence            9998888777776665543  2578999999999987643322222111     12335789999999999999999987


Q ss_pred             H
Q 029077          169 R  169 (199)
Q Consensus       169 ~  169 (199)
                      +
T Consensus       158 ~  158 (159)
T cd04159         158 K  158 (159)
T ss_pred             h
Confidence            5

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.94  E-value=9.8e-26  Score=148.71  Aligned_cols=158  Identities=20%  Similarity=0.346  Sum_probs=130.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.++|+++|..|||||||+++|. +.......||.|.......+    +.+.+++||.+|+...++.+..||...|++|
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~-~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLL-GEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhc-CCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            348999999999999999999955 44466778888888777766    6899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccH------HHHHHHHHcCCcEEEeccCCCCChHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKA------KQVTFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~------~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      +|+|++|+..+++....+..+...  ....|++++.||.|+.......      +..++++...++.+.||+.+|+++.+
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~  168 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE  168 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence            999999999888776655544332  2468999999999998532222      22245577788999999999999999


Q ss_pred             HHHHHHHHHhC
Q 029077          163 PFLYLARKLAG  173 (199)
Q Consensus       163 ~~~~i~~~~~~  173 (199)
                      -+.|++..+.+
T Consensus       169 gidWL~~~l~~  179 (185)
T KOG0073|consen  169 GIDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=7.7e-26  Score=158.99  Aligned_cols=154  Identities=16%  Similarity=0.201  Sum_probs=113.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC-------CCCcccc------ceeEEEeeEEEEe-----cCcEEEEEEEeCCCccccc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEP------TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFG   76 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~~~   76 (199)
                      +|+++|..++|||||+++|+...       +...+.+      +.|.+........     ++..+.+.+|||||+..+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999987531       1112222      2344444333222     5567899999999999998


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC---cEEEec
Q 029077           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEIS  153 (199)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~---~~~~~s  153 (199)
                      .....+++.+|++|+|+|+++..+++....|....   ..++|+++|+||+|+.+........++++..++   .++++|
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~---~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL---ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS  158 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH---HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence            88888899999999999999876666665554322   247899999999998653322222344555555   389999


Q ss_pred             cCCCCChHHHHHHHHHHH
Q 029077          154 AKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~  171 (199)
                      |++|.|+++++++|.+.+
T Consensus       159 a~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         159 AKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             ccCCCCHHHHHHHHHhhC
Confidence            999999999999998875

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.94  E-value=1.8e-28  Score=164.02  Aligned_cols=163  Identities=31%  Similarity=0.561  Sum_probs=149.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+|++++|..++||||++++++.|-|...+..++|+++......+.+..+...+||++|++++.....+|++.+.+.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            46789999999999999999999999999999999999999888888888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc--HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      +||+.+|+.||+....|++.+...+.++|.++|-||+|+.+....  .+...+++.+...++.+|++...|+..+|..|+
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa  177 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA  177 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence            999999999999999999999999999999999999999764433  234578888999999999999999999999999


Q ss_pred             HHHhC
Q 029077          169 RKLAG  173 (199)
Q Consensus       169 ~~~~~  173 (199)
                      ..+.+
T Consensus       178 eK~~q  182 (246)
T KOG4252|consen  178 EKLTQ  182 (246)
T ss_pred             HHHHH
Confidence            88754

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=2.1e-25  Score=155.22  Aligned_cols=155  Identities=15%  Similarity=0.096  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc---------ccccccC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL---------RDGYYIH   85 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~---------~~~~~~~   85 (199)
                      +|+++|.+|||||||+++|....+....  ..+.+............+.+.+|||||.......         .......
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAP--YPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCC--CCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            7999999999999999998876553211  1111211122222334689999999997431110         0011223


Q ss_pred             CcEEEEEEeCCChhhH--hcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077           86 GQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +|++++|+|+++..++  .....|+..+.....+.|+++|+||+|+.+.....+...+......+++++||++|.|++++
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEV  159 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHH
Confidence            6899999999987653  45556777776655689999999999997643333333455556778999999999999999


Q ss_pred             HHHHHHHH
Q 029077          164 FLYLARKL  171 (199)
Q Consensus       164 ~~~i~~~~  171 (199)
                      ++++.+.+
T Consensus       160 ~~~l~~~~  167 (168)
T cd01897         160 KNKACELL  167 (168)
T ss_pred             HHHHHHHh
Confidence            99999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=1.4e-25  Score=156.81  Aligned_cols=156  Identities=17%  Similarity=0.307  Sum_probs=115.9

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      ...+.++|+++|++|||||||++++....+ ..+.++.|.+......    ....+.+||++|+..+...+..+++.+++
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~~~i~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNIKTVQS----DGFKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            345689999999999999999999765543 3455666655443332    34788999999998887777888899999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHHHHc-----CCcEEEeccCCCCChH
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFE  161 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~v~  161 (199)
                      +++|+|+++..++.....+...+....  .++|+++++||.|+.+.....+........     ...++++||++|.|++
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~  164 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ  164 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence            999999999888877776666554432  479999999999986543222222211111     1247899999999999


Q ss_pred             HHHHHHHH
Q 029077          162 KPFLYLAR  169 (199)
Q Consensus       162 ~~~~~i~~  169 (199)
                      ++|++|++
T Consensus       165 ~~~~~l~~  172 (173)
T cd04155         165 EGMNWVCK  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.3e-25  Score=150.58  Aligned_cols=160  Identities=24%  Similarity=0.350  Sum_probs=133.2

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      ...+..+|+++|..+|||||++.+|..+..... .||.|.....+.+    +++.|.+||.+|+.+++..+..|+.+.++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~   87 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQG   87 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcE
Confidence            457789999999999999999999777776555 8999998888887    58999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHHH-----HcCCcEEEeccCCCCChH
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFE  161 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~  161 (199)
                      +|+|+|.+|++.+.++...+..+....  ++.|+++++||.|++..-...+..+...     .....+..|+|.+|+|+.
T Consensus        88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence            999999999998888777666555543  5899999999999998655444332222     233457889999999999


Q ss_pred             HHHHHHHHHHhC
Q 029077          162 KPFLYLARKLAG  173 (199)
Q Consensus       162 ~~~~~i~~~~~~  173 (199)
                      |.++++.+.+..
T Consensus       168 egl~wl~~~~~~  179 (181)
T KOG0070|consen  168 EGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>PTZ00099 rab6; Provisional

Probab=99.93  E-value=1.9e-24  Score=150.95  Aligned_cols=141  Identities=31%  Similarity=0.559  Sum_probs=122.2

Q ss_pred             CCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc
Q 029077           36 GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC  115 (199)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~  115 (199)
                      +.|...+.+|.|.++....+.+++..+.+.+|||+|++++...+..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45677889999999988888888889999999999999999999999999999999999999999999999999887654


Q ss_pred             -CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCCC
Q 029077          116 -ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  176 (199)
Q Consensus       116 -~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~~  176 (199)
                       ++.|+++|+||.|+.+ +.+. .+...++...+..++++||++|.|++++|.+|++.+.+.+.
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~  146 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN  146 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence             5789999999999965 3333 34456777788889999999999999999999999876553

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=7.1e-25  Score=152.77  Aligned_cols=155  Identities=15%  Similarity=0.114  Sum_probs=107.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcE-EEEEEEeCCCccc----cccccccc---ccCC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEK----FGGLRDGY---YIHG   86 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~g~~~----~~~~~~~~---~~~~   86 (199)
                      +|+++|.+|||||||+++|.......  ....+.+.......+.... ..+.+|||||...    .+.....+   +..+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v--~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccc--cCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            68999999999999999977543211  1111112111111112223 4899999999642    12222333   3469


Q ss_pred             cEEEEEEeCCCh-hhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHHH-HHHHHH-cCCcEEEeccCCCCCh
Q 029077           87 QCAIIMFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRK-KNLQYYEISAKSNYNF  160 (199)
Q Consensus        87 d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~~-~~~~~~-~~~~~~~~s~~~~~~v  160 (199)
                      |++++|+|+++. .+++.+..|...+....   .++|+++|+||+|+.+.....+. ..+... ...+++++|++++.|+
T Consensus        80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            999999999998 78888888988887654   36899999999999764443333 344444 3678999999999999


Q ss_pred             HHHHHHHHHHH
Q 029077          161 EKPFLYLARKL  171 (199)
Q Consensus       161 ~~~~~~i~~~~  171 (199)
                      +++|++|++.+
T Consensus       160 ~~l~~~i~~~~  170 (170)
T cd01898         160 DELLRKLAELL  170 (170)
T ss_pred             HHHHHHHHhhC
Confidence            99999998753

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=6.8e-24  Score=145.60  Aligned_cols=156  Identities=27%  Similarity=0.469  Sum_probs=122.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|.+|+|||||++++..+.+...+.++.+.+........++..+.+.+||+||+..+...+..+..+++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999988877667777777666665566666668999999999988888888888899999999


Q ss_pred             EeCCCh-hhHhcHH-HHHHHHHhhcC-CCcEEEEEeCCCCCCccccHHHH-HHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           93 FDVTAR-LTYKNVP-TWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        93 ~d~~~~-~s~~~~~-~~~~~l~~~~~-~~p~iiv~~K~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      +|.... .++.... .|...+..... +.|+++++||.|+.......... .+......+++++||.+|.|+.+++.+|.
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            998876 5555544 66666665554 88999999999997754333332 33334456799999999999999998763

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.92  E-value=2.1e-24  Score=146.16  Aligned_cols=133  Identities=20%  Similarity=0.248  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc-----cccccccccccCCcEE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRDGYYIHGQCA   89 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~   89 (199)
                      ||+++|++|||||||+++|..+.+  .+.+|.+.++            .-.+||++|..     .++.... .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~------------~~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEY------------NDGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEE------------cCeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            899999999999999999876543  2333333221            11689999972     2332222 47899999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH-HHHHHHHHcCC-cEEEeccCCCCChHHHHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~i  167 (199)
                      ++|+|++++.++.. ..|...+     ..|+++|+||+|+.+..... +..++++..+. +++++||++|.|++++|+++
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  140 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL  140 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence            99999999988765 3343322     34999999999997643333 33455666665 79999999999999999887


Q ss_pred             H
Q 029077          168 A  168 (199)
Q Consensus       168 ~  168 (199)
                      +
T Consensus       141 ~  141 (142)
T TIGR02528       141 N  141 (142)
T ss_pred             h
Confidence            5

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04171 SelB SelB subfamily

Probab=99.92  E-value=7.5e-24  Score=146.64  Aligned_cols=150  Identities=15%  Similarity=0.050  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC---CCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      +.|+++|++|||||||+++|...   .+.....++...+.......... ...+.+|||||++.+......++..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            36899999999999999998743   22222222222222222233321 468999999999888766667788999999


Q ss_pred             EEEeCCC---hhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cHHHHHHHHH---cCCcEEEeccCCCCCh
Q 029077           91 IMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK---KNLQYYEISAKSNYNF  160 (199)
Q Consensus        91 ~v~d~~~---~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~~~~~~~~~---~~~~~~~~s~~~~~~v  160 (199)
                      +|+|+++   ..+...+.    .+.. ....|+++++||+|+.+...    ..+..+..+.   .+.+++++|+++|.|+
T Consensus        80 ~V~d~~~~~~~~~~~~~~----~~~~-~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  154 (164)
T cd04171          80 LVVAADEGIMPQTREHLE----ILEL-LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGI  154 (164)
T ss_pred             EEEECCCCccHhHHHHHH----HHHH-hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCH
Confidence            9999987   23322221    1211 12349999999999975421    1222233333   4678999999999999


Q ss_pred             HHHHHHHHH
Q 029077          161 EKPFLYLAR  169 (199)
Q Consensus       161 ~~~~~~i~~  169 (199)
                      ++++..+.+
T Consensus       155 ~~l~~~l~~  163 (164)
T cd04171         155 EELKEYLDE  163 (164)
T ss_pred             HHHHHHHhh
Confidence            999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01878 HflX HflX subfamily

Probab=99.92  E-value=5.9e-24  Score=152.43  Aligned_cols=155  Identities=16%  Similarity=0.078  Sum_probs=108.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCc--cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc--cc------c
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--LR------D   80 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--~~------~   80 (199)
                      ...++|+++|++|||||||++++........  +.++..  .......+.+ ...+.+||+||......  ..      .
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~  115 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD--PTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRSTL  115 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc--ceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHHH
Confidence            4568999999999999999999886653221  222222  1222222222 23789999999732111  00      1


Q ss_pred             ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCC
Q 029077           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN  159 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      ..+..+|++++|+|++++.++.....|...+.... .+.|+++|+||+|+.+.....   ........+++++||++|.|
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~g  192 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEG  192 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCC
Confidence            12568999999999999888777777777665543 468999999999997643222   34445567899999999999


Q ss_pred             hHHHHHHHHHHH
Q 029077          160 FEKPFLYLARKL  171 (199)
Q Consensus       160 v~~~~~~i~~~~  171 (199)
                      +++++.+|.+.+
T Consensus       193 i~~l~~~L~~~~  204 (204)
T cd01878         193 LDELLEAIEELL  204 (204)
T ss_pred             HHHHHHHHHhhC
Confidence            999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK15494 era GTPase Era; Provisional

Probab=99.92  E-value=1.1e-23  Score=160.98  Aligned_cols=171  Identities=18%  Similarity=0.257  Sum_probs=117.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-cccccc-------cc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRD-------GY   82 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~-------~~   82 (199)
                      .+.++|+++|.+|||||||+|+|++..+. ...+..+++.......+...+..+.+|||||... +..+..       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~  128 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS  128 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence            45679999999999999999998866543 2333444333333222333456789999999743 222221       23


Q ss_pred             ccCCcEEEEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcC--CcEEEeccCCCCC
Q 029077           83 YIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYN  159 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~  159 (199)
                      +..+|++++|+|..+  ++.... .|+..+...  +.|.++|+||+|+.+.. ..+..+.+....  ..++++||++|.|
T Consensus       129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~g  203 (339)
T PRK15494        129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGKN  203 (339)
T ss_pred             hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCccC
Confidence            678999999999765  344443 344444433  56778899999996542 233334444433  5699999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCceecCCCCCC
Q 029077          160 FEKPFLYLARKLAGDPNLHFVESPALAP  187 (199)
Q Consensus       160 v~~~~~~i~~~~~~~~~~~~~~~p~~~~  187 (199)
                      +++++++|.+.+.+.+.++-.|..+..+
T Consensus       204 v~eL~~~L~~~l~~~~~~~~~~~~td~~  231 (339)
T PRK15494        204 IDGLLEYITSKAKISPWLYAEDDITDLP  231 (339)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence            9999999999999988777666666554

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=1.2e-23  Score=156.66  Aligned_cols=168  Identities=15%  Similarity=0.079  Sum_probs=114.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc--------cccccccCC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHG   86 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~   86 (199)
                      +|+++|.+|||||||+|+|++.... ...+..+++...........+..+.+|||||......        ....++..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~-~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKIS-ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEe-ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            6999999999999999998765432 2223333343333332333446789999999754211        123456899


Q ss_pred             cEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH-HHHHHHHHcCC-cEEEeccCCCCChHHHH
Q 029077           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPF  164 (199)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~-~~~~~s~~~~~~v~~~~  164 (199)
                      |++++|+|+++..+..  ..+...+..  .+.|+++|+||+|+.+..... ....++...+. .++++||++|.|+++++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~  156 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA  156 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence            9999999999876553  333444433  378999999999997432222 22234444444 79999999999999999


Q ss_pred             HHHHHHHhCCCCCceecCCCCCC
Q 029077          165 LYLARKLAGDPNLHFVESPALAP  187 (199)
Q Consensus       165 ~~i~~~~~~~~~~~~~~~p~~~~  187 (199)
                      ++|.+.+.+.+...-.+..+..+
T Consensus       157 ~~l~~~l~~~~~~~~~~~~t~~~  179 (270)
T TIGR00436       157 AFIEVHLPEGPFRYPEDYVTDQP  179 (270)
T ss_pred             HHHHHhCCCCCCCCCCcccCCCC
Confidence            99999998888665555555443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.92  E-value=2.9e-23  Score=150.45  Aligned_cols=165  Identities=34%  Similarity=0.521  Sum_probs=134.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      +..+||+++|+.|||||||+++|..+.+...+.++.+..............+.+.+||++|++.++..+..++..+++++
T Consensus         3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l   82 (219)
T COG1100           3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL   82 (219)
T ss_pred             cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence            34499999999999999999999999998888889887777777766656889999999999999999999999999999


Q ss_pred             EEEeCCCh-hhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcccc-------------HHH-HHHHHH---cCCcEEE
Q 029077           91 IMFDVTAR-LTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-------------AKQ-VTFHRK---KNLQYYE  151 (199)
Q Consensus        91 ~v~d~~~~-~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~-------------~~~-~~~~~~---~~~~~~~  151 (199)
                      +|+|.++. .+++....|...+.... .+.|+++|+||.|+......             .+. ......   ....+++
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (219)
T COG1100          83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE  162 (219)
T ss_pred             EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence            99999994 45566778999988887 47999999999999765321             111 111111   1233899


Q ss_pred             eccC--CCCChHHHHHHHHHHHhCCC
Q 029077          152 ISAK--SNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       152 ~s~~--~~~~v~~~~~~i~~~~~~~~  175 (199)
                      +|+.  ++.++.++|..+++.+....
T Consensus       163 ~s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         163 TSAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             eecccCCCcCHHHHHHHHHHHHHHhh
Confidence            9999  99999999999999886443

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=9.4e-24  Score=151.07  Aligned_cols=156  Identities=21%  Similarity=0.193  Sum_probs=101.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCc-----------ccccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-----------EKFGGLR   79 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-----------~~~~~~~   79 (199)
                      ...++|+++|.+|||||||+++|....+.....+  |++.........    .+.+|||||.           +.++..+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            4568999999999999999999887665433333  555544443322    5899999993           4444444


Q ss_pred             cccc----cCCcEEEEEEeCCChhhHhc---------H-HHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHc
Q 029077           80 DGYY----IHGQCAIIMFDVTARLTYKN---------V-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK  145 (199)
Q Consensus        80 ~~~~----~~~d~~i~v~d~~~~~s~~~---------~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~  145 (199)
                      ..++    ..++++++|+|.++...+..         . ......+..  .++|+++|+||+|+.+.. .....++++..
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~  157 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-DEVLDEIAERL  157 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-HHHHHHHHHHh
Confidence            3443    34578888888764322100         0 111222222  379999999999996543 12223444444


Q ss_pred             CC---------cEEEeccCCCCChHHHHHHHHHHHhCCCC
Q 029077          146 NL---------QYYEISAKSNYNFEKPFLYLARKLAGDPN  176 (199)
Q Consensus       146 ~~---------~~~~~s~~~~~~v~~~~~~i~~~~~~~~~  176 (199)
                      +.         +++++||++| |+++++++|++.+.+..+
T Consensus       158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~  196 (201)
T PRK04213        158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR  196 (201)
T ss_pred             cCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence            43         5899999999 999999999998765444

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=2.1e-23  Score=148.47  Aligned_cols=146  Identities=16%  Similarity=0.212  Sum_probs=105.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc--CCCCCcc------------ccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR   79 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~   79 (199)
                      -+|+++|..++|||||+++|+.  +.+...+            ..+.|.+.......+....+.+.+||+||++.+....
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3899999999999999999886  4443332            2345666665555666677899999999999998888


Q ss_pred             cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc---HHHHHHHH-------HcCCcE
Q 029077           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KKNLQY  149 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~---~~~~~~~~-------~~~~~~  149 (199)
                      ..+++++|++++|+|+++.. +.....++..+..  .++|+++|+||+|+.+....   .+..++..       ..++++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV  159 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence            89999999999999998742 2222233333332  37899999999999653321   22223332       236789


Q ss_pred             EEeccCCCCChHH
Q 029077          150 YEISAKSNYNFEK  162 (199)
Q Consensus       150 ~~~s~~~~~~v~~  162 (199)
                      +++||++|.|+.+
T Consensus       160 v~~Sa~~g~~~~~  172 (194)
T cd01891         160 LYASAKNGWASLN  172 (194)
T ss_pred             EEeehhccccccc
Confidence            9999999988743

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=5.5e-23  Score=156.26  Aligned_cols=160  Identities=17%  Similarity=0.115  Sum_probs=113.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC-cEEEEEEEeCCCccccc----ccccc---cccC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFG----GLRDG---YYIH   85 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~----~~~~~---~~~~   85 (199)
                      -.|+++|.++||||||++++......  .....+++..+....+.. ....+.+||+||.....    .+...   .+..
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~--va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCc--cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            36999999999999999997754321  122222333333332222 34578999999964311    12222   3567


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccc-cHH-HHHHHHHcCCcEEEeccCCCCCh
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-KAK-QVTFHRKKNLQYYEISAKSNYNF  160 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~-~~~-~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      ++++++|+|+++.++++....|..++..+.   .++|+++|+||+|+.+... ..+ ...++...+.+++++||+++.|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            999999999998778888888998887764   3789999999999975432 222 22334555688999999999999


Q ss_pred             HHHHHHHHHHHhCCC
Q 029077          161 EKPFLYLARKLAGDP  175 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~  175 (199)
                      ++++++|.+.+.+.+
T Consensus       317 ~eL~~~L~~~l~~~~  331 (335)
T PRK12299        317 DELLRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999876533

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.91  E-value=9.9e-23  Score=138.66  Aligned_cols=150  Identities=39%  Similarity=0.662  Sum_probs=118.5

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC
Q 029077           18 IVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT   96 (199)
Q Consensus        18 viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   96 (199)
                      ++|++|+|||||++++..... .....++. .+..............+.+||++|...+......+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999886665 34444454 6666666666667889999999998887777788889999999999999


Q ss_pred             ChhhHhcHHHH--HHHHHhhcCCCcEEEEEeCCCCCCccccHH---HHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           97 ARLTYKNVPTW--HRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        97 ~~~s~~~~~~~--~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      +..++.....|  .........+.|+++++||.|+........   ..........+++++|+..+.|+++++.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            99988888776  333333446899999999999976544333   2345556678899999999999999998875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.90  E-value=1.1e-22  Score=139.90  Aligned_cols=147  Identities=16%  Similarity=0.121  Sum_probs=103.6

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc------ccccc--cCCcEE
Q 029077           18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCA   89 (199)
Q Consensus        18 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~   89 (199)
                      ++|.+|+|||||++++..........+....+.....+..+  ...+.+|||||+..+...      ...++  ..+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            57999999999999987655333333333333333334433  357899999998766542      34444  489999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-ccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      ++|+|+++.+..   ..+...+..  .++|+++|+||+|+.+.. ...+...+....+.+++++|+.+|.|+.+++..+.
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~  153 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA  153 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence            999999876442   233333333  378999999999997643 33333456666788999999999999999999998


Q ss_pred             HHH
Q 029077          169 RKL  171 (199)
Q Consensus       169 ~~~  171 (199)
                      +++
T Consensus       154 ~~~  156 (158)
T cd01879         154 ELA  156 (158)
T ss_pred             HHh
Confidence            764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=9.2e-23  Score=131.38  Aligned_cols=157  Identities=21%  Similarity=0.328  Sum_probs=126.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.++|+++|..++||||++..|..+. .....||.|.....+.+    +++.|++||.+|+++.+.+++.|+....++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            457899999999999999999966544 45667899988888877    7899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      ||+|+.++...+++..-+..+...  ..+.++++..||.|+++...+++.....     +....-+..+++.+|.|+.+-
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg  169 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG  169 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence            999999886666655444433332  2578999999999999877666654332     223345788999999999999


Q ss_pred             HHHHHHHHh
Q 029077          164 FLYLARKLA  172 (199)
Q Consensus       164 ~~~i~~~~~  172 (199)
                      +.++...+.
T Consensus       170 lswlsnn~~  178 (180)
T KOG0071|consen  170 LSWLSNNLK  178 (180)
T ss_pred             HHHHHhhcc
Confidence            999987654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.90  E-value=4.1e-23  Score=135.69  Aligned_cols=114  Identities=28%  Similarity=0.536  Sum_probs=86.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      ||+|+|+.|||||||+++|..+.+.  ..+.+..+.+..............+.+||++|++.+......++.++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999877765  12222333333333444455566699999999988887777779999999999


Q ss_pred             EeCCChhhHhcHHH---HHHHHHhhcCCCcEEEEEeCCC
Q 029077           93 FDVTARLTYKNVPT---WHRDLCRVCENIPIVLCGNKVD  128 (199)
Q Consensus        93 ~d~~~~~s~~~~~~---~~~~l~~~~~~~p~iiv~~K~D  128 (199)
                      ||++++.++..+..   |+..+....++.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999999988754   5666666667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.90  E-value=2e-22  Score=140.14  Aligned_cols=155  Identities=15%  Similarity=0.157  Sum_probs=104.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      .|+++|.+|||||||+++|..+.+.....+....+......... +....+.+|||||+..+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999988776654332222222222222222 13678999999999888777777889999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH--HHH-HHHH------HcCCcEEEeccCCCCChHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQV-TFHR------KKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~--~~~-~~~~------~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      |+++....+.. ..+..+..  .++|+++|+||+|+.......  +.. .+..      ....+++++|+.+|.|+++++
T Consensus        82 d~~~~~~~~~~-~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  158 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL  158 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence            99875321111 11222222  478999999999987532211  111 1111      123579999999999999999


Q ss_pred             HHHHHHHh
Q 029077          165 LYLARKLA  172 (199)
Q Consensus       165 ~~i~~~~~  172 (199)
                      ++|.+...
T Consensus       159 ~~l~~~~~  166 (168)
T cd01887         159 EAILLLAE  166 (168)
T ss_pred             HHHHHhhh
Confidence            99987653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=1.9e-22  Score=138.50  Aligned_cols=147  Identities=18%  Similarity=0.154  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc--------ccccccC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH   85 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~   85 (199)
                      ++|+++|++|+|||||++++...... ...+..+++.......+......+.+||+||...+...        ....+.+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~   80 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRA-IVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE   80 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceE-eccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence            58999999999999999997755431 11122233322222222233568899999997654332        2235678


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +|++++|+|++++.+......+..     ..+.|+++|+||+|+.+....     .....+.+++++|++++.|++++++
T Consensus        81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~  150 (157)
T cd04164          81 ADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKE  150 (157)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHH
Confidence            999999999998766555443332     358999999999999764433     3445567899999999999999999


Q ss_pred             HHHHHH
Q 029077          166 YLARKL  171 (199)
Q Consensus       166 ~i~~~~  171 (199)
                      +|.+.+
T Consensus       151 ~l~~~~  156 (157)
T cd04164         151 ALLELA  156 (157)
T ss_pred             HHHHhh
Confidence            988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=3e-22  Score=162.60  Aligned_cols=157  Identities=15%  Similarity=0.162  Sum_probs=116.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC-------CCCccc------cceeEEEeeEEEEe-----cCcEEEEEEEeCCCcccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGE-------FEKKYE------PTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKF   75 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~~   75 (199)
                      -+++++|+.++|||||+++|+...       +...+.      .+.|.+.......+     ++..+.+.+|||||+..|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            489999999999999999988532       122222      23355555433322     456789999999999999


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC---cEEEe
Q 029077           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI  152 (199)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~---~~~~~  152 (199)
                      ...+..++..+|++|+|+|+++..+.+....|...+.   .+.|+++|+||+|+.+........++....++   .++++
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~v  160 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILA  160 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEe
Confidence            8888889999999999999998777666666654432   37899999999999753322222344444454   38999


Q ss_pred             ccCCCCChHHHHHHHHHHHhC
Q 029077          153 SAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      ||++|.|+++++++|.+.+..
T Consensus       161 SAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       161 SAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             eccCCCCHHHHHHHHHHhCCC
Confidence            999999999999999987753

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.89  E-value=6.7e-23  Score=138.61  Aligned_cols=147  Identities=17%  Similarity=0.195  Sum_probs=100.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc------ccc--ccC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGY--YIH   85 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~--~~~   85 (199)
                      ++|+++|.++||||||+|+|.+...  ......|++.......+......+.++|+||.-......      ..+  ..+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~--~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQ--KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSE--EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCc--eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            6899999999999999999776553  233345555555554444445889999999954332221      222  368


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      .|+++.|+|+++.+.-.   ....++.+.  ++|++++.||+|...+ ....+...+.+..+++++.+||.++.|+++++
T Consensus        79 ~D~ii~VvDa~~l~r~l---~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~  153 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNL---YLTLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK  153 (156)
T ss_dssp             SSEEEEEEEGGGHHHHH---HHHHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred             CCEEEEECCCCCHHHHH---HHHHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence            99999999998754322   333344443  8999999999998653 33345567778889999999999999999998


Q ss_pred             HHH
Q 029077          165 LYL  167 (199)
Q Consensus       165 ~~i  167 (199)
                      +.|
T Consensus       154 ~~I  156 (156)
T PF02421_consen  154 DAI  156 (156)
T ss_dssp             HHH
T ss_pred             hhC
Confidence            765

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=5.7e-22  Score=155.93  Aligned_cols=153  Identities=23%  Similarity=0.240  Sum_probs=108.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc--------cccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY   82 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~   82 (199)
                      ...++|+++|++|||||||+|+|+.... ....+..|++.......+...+..+.+|||||.......        ...+
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~-aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            4568999999999999999999876432 111223333333333333333467799999998654332        2346


Q ss_pred             ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      ++++|++++|+|++++.++...  |+..+..  .++|+++|+||.|+.+.    +...+++..+.+++++|+++ .|+++
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~  350 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKA  350 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHH
Confidence            7899999999999988776654  5555433  37899999999999654    11234556677899999998 69999


Q ss_pred             HHHHHHHHHhC
Q 029077          163 PFLYLARKLAG  173 (199)
Q Consensus       163 ~~~~i~~~~~~  173 (199)
                      +++.+.+.+.+
T Consensus       351 ~~~~L~~~i~~  361 (442)
T TIGR00450       351 LVDLLTQKINA  361 (442)
T ss_pred             HHHHHHHHHHH
Confidence            99999888764

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.89  E-value=4.5e-22  Score=151.19  Aligned_cols=156  Identities=15%  Similarity=0.148  Sum_probs=107.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC-cEEEEEEEeCCCccccc----cccccc---ccC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFG----GLRDGY---YIH   85 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~----~~~~~~---~~~   85 (199)
                      -.|+++|.++||||||++++.......  ....+++..+....+.. ....+.+||+||.....    .+...+   +..
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~v--a~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKI--ADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccc--cCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            479999999999999999977543211  11111122221111111 23788999999974321    222233   457


Q ss_pred             CcEEEEEEeCCCh---hhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHHH-HHHHHHcCCcEEEeccCCCC
Q 029077           86 GQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY  158 (199)
Q Consensus        86 ~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~~  158 (199)
                      ++++++|+|+++.   .+++.+..|..++..+.   .++|+++|+||+|+.+.....+. ..+++..+.+++++||+++.
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence            9999999999976   56777778887776653   47899999999999764332222 24555567889999999999


Q ss_pred             ChHHHHHHHHHHH
Q 029077          159 NFEKPFLYLARKL  171 (199)
Q Consensus       159 ~v~~~~~~i~~~~  171 (199)
                      |+++++.+|.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.89  E-value=2.4e-22  Score=140.72  Aligned_cols=151  Identities=14%  Similarity=0.107  Sum_probs=102.1

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc-EEEEEEEeCCCccc----ccccc---cccccCCcEE
Q 029077           18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLR---DGYYIHGQCA   89 (199)
Q Consensus        18 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~----~~~~~---~~~~~~~d~~   89 (199)
                      ++|++|||||||+++|......  .....+.+........... ...+.+||+||...    .+...   ...+..+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPK--VANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCcc--ccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            5899999999999998766431  1111111211111112223 56789999999632    12221   2346789999


Q ss_pred             EEEEeCCCh------hhHhcHHHHHHHHHhhc--------CCCcEEEEEeCCCCCCccccHHH--HHHHHHcCCcEEEec
Q 029077           90 IIMFDVTAR------LTYKNVPTWHRDLCRVC--------ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEIS  153 (199)
Q Consensus        90 i~v~d~~~~------~s~~~~~~~~~~l~~~~--------~~~p~iiv~~K~D~~~~~~~~~~--~~~~~~~~~~~~~~s  153 (199)
                      ++|+|+++.      .++.....|...+....        .+.|+++|+||+|+.......+.  .......+..++++|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            999999987      46777777776665442        37999999999999764333322  234444567899999


Q ss_pred             cCCCCChHHHHHHHHHH
Q 029077          154 AKSNYNFEKPFLYLARK  170 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~  170 (199)
                      ++++.|++++++++.+.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999988764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=6.5e-22  Score=157.76  Aligned_cols=155  Identities=21%  Similarity=0.204  Sum_probs=106.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--------cccccccccc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYI   84 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~   84 (199)
                      ..+|+|+|.+|||||||+|+|+.+.. ....++.|++...........+..+.+|||||.+.        +......++.
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            36899999999999999999876543 22334555554444443333445688999999763        2222344678


Q ss_pred             CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      .+|++|+|+|++++.++.. ..+...+..  .++|+++|+||+|+....... ...+....+ ..+++||++|.|+.+++
T Consensus       117 ~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~~~-~~~~~~g~~-~~~~iSA~~g~gi~eL~  191 (472)
T PRK03003        117 TADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEADA-AALWSLGLG-EPHPVSALHGRGVGDLL  191 (472)
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccchhh-HHHHhcCCC-CeEEEEcCCCCCcHHHH
Confidence            9999999999998765432 234444433  389999999999986532111 111222222 35799999999999999


Q ss_pred             HHHHHHHhC
Q 029077          165 LYLARKLAG  173 (199)
Q Consensus       165 ~~i~~~~~~  173 (199)
                      ++|++.+..
T Consensus       192 ~~i~~~l~~  200 (472)
T PRK03003        192 DAVLAALPE  200 (472)
T ss_pred             HHHHhhccc
Confidence            999998855

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.88  E-value=1.1e-21  Score=150.27  Aligned_cols=152  Identities=15%  Similarity=0.090  Sum_probs=103.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCC--ccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--ccccc------cc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLR------DG   81 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~------~~   81 (199)
                      ..++|+++|.+|||||||+|+|.......  .+.+|....  ...+.+. ....+.+|||+|..+  .....      ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~--~~~i~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~tle  264 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPT--TRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRATLE  264 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCE--EEEEEeC-CCceEEEEecCcccccCCHHHHHHHHHHHH
Confidence            44899999999999999999988654321  122333222  2233332 235789999999722  11111      12


Q ss_pred             cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      .+.++|++++|+|++++.++.....|...+.... .+.|+++|+||+|+.+...    .........+++++||++|.|+
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----v~~~~~~~~~~i~iSAktg~GI  340 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----IERLEEGYPEAVFVSAKTGEGL  340 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh----HHHHHhCCCCEEEEEccCCCCH
Confidence            3678999999999999887776666665555442 4789999999999965321    1111122346899999999999


Q ss_pred             HHHHHHHHHH
Q 029077          161 EKPFLYLARK  170 (199)
Q Consensus       161 ~~~~~~i~~~  170 (199)
                      ++++..|.+.
T Consensus       341 ~eL~~~I~~~  350 (351)
T TIGR03156       341 DLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHhh
Confidence            9999988764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01889 SelB_euk SelB subfamily

Probab=99.88  E-value=1.1e-21  Score=139.46  Aligned_cols=157  Identities=15%  Similarity=0.099  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC----CCCCcc-----ccceeEEEeeEEEE----------ecCcEEEEEEEeCCCccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTG----EFEKKY-----EPTIGVEVHPLDFF----------TNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~----~~~~~~-----~~~~~~~~~~~~~~----------~~~~~~~~~l~D~~g~~~   74 (199)
                      ++|+++|+.++|||||+++|...    .+...+     ..|.+.........          ..+..+.+.+||+||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999998752    111111     12333333333332          123467899999999865


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc----HHHHH-HHH------
Q 029077           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVT-FHR------  143 (199)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~----~~~~~-~~~------  143 (199)
                      +..........+|++++|+|+++.........+.  +... .+.|+++++||+|+......    .+..+ +..      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  157 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR  157 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4333334456789999999998754333322222  1121 26799999999998642211    11111 111      


Q ss_pred             HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          144 KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       144 ~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      ..+.+++++||++|.|+++++..+...+.-
T Consensus       158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         158 FKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             cCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            235789999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01894 EngA1 EngA1 subfamily

Probab=99.88  E-value=6.5e-22  Score=135.90  Aligned_cols=147  Identities=20%  Similarity=0.144  Sum_probs=97.9

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc--------cccccccCCcE
Q 029077           17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQC   88 (199)
Q Consensus        17 ~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d~   88 (199)
                      +++|.+|+|||||++++...... ......+++..............+.+|||||...+..        .....+..+|+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~   79 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDA-IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV   79 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEE-eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence            47899999999999998755321 1111222232222222233447899999999877543        22345688999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cEEEeccCCCCChHHHHHHH
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +++|+|..+..+.... .....+..  .+.|+++|+||+|+.+....   .......+. .++++|+++|.|+++++++|
T Consensus        80 ii~v~d~~~~~~~~~~-~~~~~~~~--~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  153 (157)
T cd01894          80 ILFVVDGREGLTPADE-EIAKYLRK--SKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAI  153 (157)
T ss_pred             EEEEEeccccCCccHH-HHHHHHHh--cCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence            9999999875443322 22222322  26999999999999764332   222333455 78999999999999999999


Q ss_pred             HHH
Q 029077          168 ARK  170 (199)
Q Consensus       168 ~~~  170 (199)
                      .+.
T Consensus       154 ~~~  156 (157)
T cd01894         154 LEL  156 (157)
T ss_pred             Hhh
Confidence            875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.88  E-value=2.7e-22  Score=130.18  Aligned_cols=157  Identities=22%  Similarity=0.353  Sum_probs=124.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      ..+.+.++|..++|||||+|....+.+...-.||.|.....++-    .++.+.+||.+|+..|++.+..|.+.++++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tk----gnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTK----GNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEecc----CceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            35789999999999999999877777777778888876555443    78999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHHHHc-----CCcEEEeccCCCCChHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~~~  164 (199)
                      |+|+.+++.+.....-+..+....  ..+|+++.|||.|+.+.-.....++.....     .+.+|.+|+++..|++.+.
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~  174 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL  174 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence            999999877655544333333322  579999999999999865544443322222     2458999999999999999


Q ss_pred             HHHHHHHh
Q 029077          165 LYLARKLA  172 (199)
Q Consensus       165 ~~i~~~~~  172 (199)
                      +||.+...
T Consensus       175 ~Wli~hsk  182 (186)
T KOG0075|consen  175 DWLIEHSK  182 (186)
T ss_pred             HHHHHHhh
Confidence            99987653

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.88  E-value=8.3e-22  Score=155.76  Aligned_cols=150  Identities=18%  Similarity=0.194  Sum_probs=106.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc--------ccccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY   83 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~   83 (199)
                      ..++|+++|.+|+|||||+|+|...... ...+..|++.......+...+..+.+|||+|...+...        ...++
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERA-IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            4589999999999999999998765431 11223333333322222223467899999998654332        12357


Q ss_pred             cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      .++|++++|+|++++.++.....|..     ..+.|+++|+||+|+.+.....      ...+.+++++|+++|.|++++
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L  361 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDEL  361 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHH
Confidence            88999999999998877665444432     4578999999999997533221      334567999999999999999


Q ss_pred             HHHHHHHHhC
Q 029077          164 FLYLARKLAG  173 (199)
Q Consensus       164 ~~~i~~~~~~  173 (199)
                      +++|.+.+..
T Consensus       362 ~~~L~~~l~~  371 (449)
T PRK05291        362 REAIKELAFG  371 (449)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.88  E-value=8.8e-22  Score=129.04  Aligned_cols=165  Identities=23%  Similarity=0.362  Sum_probs=142.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      +--.+||.++|+...|||||+-.++.+.+...+..+.|+.+-...+.+.+.++.+.+||.+|++++..........+-++
T Consensus        17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI   96 (205)
T KOG1673|consen   17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI   96 (205)
T ss_pred             cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence            44568999999999999999999999999888999999999999999999999999999999999988888888999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-------ccccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-------RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-------~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      +++||.+.++.+..+..|+.+-+......--|+||+|.|+--       ..+..+....++-.+.+.++||+....|+.+
T Consensus        97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K  176 (205)
T KOG1673|consen   97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK  176 (205)
T ss_pred             EEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence            999999999999999999998877654333357799999632       2233445677888899999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 029077          163 PFLYLARKLAGD  174 (199)
Q Consensus       163 ~~~~i~~~~~~~  174 (199)
                      +|..+...+..-
T Consensus       177 IFK~vlAklFnL  188 (205)
T KOG1673|consen  177 IFKIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHHHhCC
Confidence            999888887643

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.88  E-value=1.6e-21  Score=137.94  Aligned_cols=155  Identities=18%  Similarity=0.122  Sum_probs=107.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCcccc--------------ceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (199)
                      +|+++|.+|||||||++.|...........              ..+.+..............+.+||+||...+.....
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            589999999999999999876655433211              112222222222333457899999999888777777


Q ss_pred             ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH----HHHHHHHH------------
Q 029077           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK------------  144 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~----~~~~~~~~------------  144 (199)
                      .++..+|++++|+|+.++..... ..++..+..  .+.|+++|+||+|+.......    +..+..+.            
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTR  157 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcc
Confidence            88899999999999987654332 223333333  489999999999997522211    11222222            


Q ss_pred             --cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          145 --KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       145 --~~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                        ...+++++|+++|.|+++++.++.+.+.
T Consensus       158 ~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         158 NGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence              3567999999999999999999998863

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.88  E-value=2.3e-21  Score=138.70  Aligned_cols=113  Identities=17%  Similarity=0.167  Sum_probs=77.9

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH----H
Q 029077           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----K  137 (199)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~----~  137 (199)
                      ..+.+||+||++.+...+...+..+|++++|+|++++.........+..+.. ....|+++|+||+|+.+.....    +
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~~~iiivvNK~Dl~~~~~~~~~~~~  161 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGLKHIIIVQNKIDLVKEEQALENYEQ  161 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCCCcEEEEEEchhccCHHHHHHHHHH
Confidence            6789999999988877777778889999999999874211111112222221 2235789999999997532211    1


Q ss_pred             HHHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077          138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       138 ~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~  175 (199)
                      ...+...   .+.+++++||++|.|++++++.|.+.+...|
T Consensus       162 i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~  202 (203)
T cd01888         162 IKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP  202 (203)
T ss_pred             HHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence            1223322   2567999999999999999999998776644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.88  E-value=1.3e-21  Score=134.55  Aligned_cols=140  Identities=16%  Similarity=0.089  Sum_probs=96.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc----cccccCCcEEE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI   90 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----~~~~~~~d~~i   90 (199)
                      +|+++|.+|+|||||+|++. +.+.. ...+.++       .+...    .+||+||........    ...+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~-~~~~~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQ-GNYTL-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHc-CCCcc-CccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999955 43321 1122221       11222    269999973222111    22368999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC--cEEEeccCCCCChHHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      +|+|+++..++..  .|+..+   ..++|+++++||.|+.+.. .....+++...++  +++++|+++|.|++++|+.+.
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~  143 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA  143 (158)
T ss_pred             EEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence            9999998876533  333332   2467999999999996532 2333456666664  899999999999999999998


Q ss_pred             HHHhC
Q 029077          169 RKLAG  173 (199)
Q Consensus       169 ~~~~~  173 (199)
                      +.+.+
T Consensus       144 ~~~~~  148 (158)
T PRK15467        144 SLTKQ  148 (158)
T ss_pred             Hhchh
Confidence            87743

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=4.5e-21  Score=149.35  Aligned_cols=159  Identities=16%  Similarity=0.168  Sum_probs=111.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc-EEEEEEEeCCCcccc----ccccccc---ccCC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKF----GGLRDGY---YIHG   86 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~----~~~~~~~---~~~~   86 (199)
                      .|+++|.++||||||++++......  .....+++..+....+... ...+.+||+||....    ..+...+   +..+
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~k--Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPK--IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCc--cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            8999999999999999997754421  1112222333322222222 467999999996431    1222233   4569


Q ss_pred             cEEEEEEeCCCh---hhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077           87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (199)
Q Consensus        87 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      +++++|+|+++.   ..++....|..++..+.   .++|.++|+||+|+.+..  .....+.+..+.+++++||+++.|+
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e~l~~l~~~l~~~i~~iSA~tgeGI  315 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE--ENLEEFKEKLGPKVFPISALTGQGL  315 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--HHHHHHHHHhCCcEEEEeCCCCCCH
Confidence            999999999864   56666777877777654   378999999999985421  2223455555678999999999999


Q ss_pred             HHHHHHHHHHHhCCCCC
Q 029077          161 EKPFLYLARKLAGDPNL  177 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~  177 (199)
                      ++++.+|.+.+...+..
T Consensus       316 ~eL~~~L~~~l~~~~~~  332 (424)
T PRK12297        316 DELLYAVAELLEETPEF  332 (424)
T ss_pred             HHHHHHHHHHHHhCccc
Confidence            99999999998776654

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=1.1e-21  Score=156.46  Aligned_cols=157  Identities=18%  Similarity=0.221  Sum_probs=106.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEee--EEEEecCcEEEEEEEeCCCccc----------cccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEK----------FGGL   78 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~----------~~~~   78 (199)
                      ...++|+++|.+|||||||+|+|+..... ...+..|++...  ..+..+  +..+.+|||+|..+          +...
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~-~~s~~~gtT~d~~~~~~~~~--~~~~~l~DTaG~~~~~~~~~~~e~~~~~  285 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEERS-VVDDVAGTTVDPVDSLIELG--GKTWRFVDTAGLRRRVKQASGHEYYASL  285 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCccCCcceEEEEEC--CEEEEEEECCCccccccccchHHHHHHH
Confidence            35689999999999999999998865432 222333333333  233333  34567999999632          1111


Q ss_pred             c-cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH---HHH--HHHHHcCCcEEEe
Q 029077           79 R-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQV--TFHRKKNLQYYEI  152 (199)
Q Consensus        79 ~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~---~~~--~~~~~~~~~~~~~  152 (199)
                      . ..+++.+|++++|+|++++.+++... ++..+..  .++|+++|+||+|+.+.....   +..  .+.....++++++
T Consensus       286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~  362 (472)
T PRK03003        286 RTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI  362 (472)
T ss_pred             HHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence            1 23468999999999999987777653 3333333  479999999999996532111   111  1222234689999


Q ss_pred             ccCCCCChHHHHHHHHHHHhC
Q 029077          153 SAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      ||++|.|++++|..+.+.+..
T Consensus       363 SAk~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        363 SAKTGRAVDKLVPALETALES  383 (472)
T ss_pred             ECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999987753

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.87  E-value=4.6e-21  Score=136.58  Aligned_cols=161  Identities=15%  Similarity=0.100  Sum_probs=106.3

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc----------ccc
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFG   76 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~   76 (199)
                      +.......+|+++|.+|+|||||++++....+...+.++.|.+........   +..+.+||+||..          .+.
T Consensus        18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~   94 (196)
T PRK00454         18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ   94 (196)
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence            345567889999999999999999998876655566666665544332221   3678999999953          222


Q ss_pred             cccccccc---CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH----HHHHHHHcCCcE
Q 029077           77 GLRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQY  149 (199)
Q Consensus        77 ~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~----~~~~~~~~~~~~  149 (199)
                      .....++.   ..+++++++|.+++...... .+...+..  .+.|+++++||+|+.+......    ...........+
T Consensus        95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~  171 (196)
T PRK00454         95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV  171 (196)
T ss_pred             HHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence            23333443   34678888888765432221 11122222  3789999999999865322221    223333335789


Q ss_pred             EEeccCCCCChHHHHHHHHHHHhC
Q 029077          150 YEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      +++|+++|.|++++++.|.+.+.+
T Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        172 ILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhcC
Confidence            999999999999999999887653

>cd04163 Era Era subfamily

Probab=99.87  E-value=8.1e-21  Score=131.47  Aligned_cols=155  Identities=15%  Similarity=0.116  Sum_probs=102.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc--------ccccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY   83 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~   83 (199)
                      ...+|+++|++|+|||||++++........ .+....+..............+.+||+||.......        ....+
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIV-SPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEec-cCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            468999999999999999999775443211 111222222223333444578899999997543322        23347


Q ss_pred             cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHHH-HHHHHc-CCcEEEeccCCCCCh
Q 029077           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNYNF  160 (199)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~~-~~~~~~-~~~~~~~s~~~~~~v  160 (199)
                      ..+|++++|+|+++... +....+...+...  +.|+++|+||.|+.. .....+.. .+.... ..+++++|++++.|+
T Consensus        81 ~~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          81 KDVDLVLFVVDASEPIG-EGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             HhCCEEEEEEECCCccC-chHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            78999999999998621 1122233333332  689999999999984 33323322 333333 367999999999999


Q ss_pred             HHHHHHHHHH
Q 029077          161 EKPFLYLARK  170 (199)
Q Consensus       161 ~~~~~~i~~~  170 (199)
                      ++++..|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999998765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00089 era GTPase Era; Reviewed

Probab=99.87  E-value=1.1e-20  Score=142.52  Aligned_cols=171  Identities=16%  Similarity=0.135  Sum_probs=112.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc--------ccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGY   82 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~   82 (199)
                      ++...|+++|.+|||||||+|+|++.... ...+...++...........+..+.+|||||......        .....
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~~-~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhCCcee-ecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            45678999999999999999997765432 2222333333333332333447899999999654321        22335


Q ss_pred             ccCCcEEEEEEeCCChhhHhcHHH-HHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHH-HHHHHHcC-CcEEEeccCCCC
Q 029077           83 YIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKN-LQYYEISAKSNY  158 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~-~~~~~~~~-~~~~~~s~~~~~  158 (199)
                      +..+|++++|+|+++..  ..... ....+..  .+.|+++|+||+|+.. ....... ..+....+ ..++++||++|.
T Consensus        82 ~~~~D~il~vvd~~~~~--~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         82 LKDVDLVLFVVDADEKI--GPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             HhcCCEEEEEEeCCCCC--ChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            67899999999998732  22222 2222322  3689999999999973 2222222 23333333 569999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCceecCCCCC
Q 029077          159 NFEKPFLYLARKLAGDPNLHFVESPALA  186 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~~~~~~~~~~p~~~  186 (199)
                      |+++++++|.+.+.+.+.+...+..+..
T Consensus       158 gv~~L~~~L~~~l~~~~~~y~~~~~td~  185 (292)
T PRK00089        158 NVDELLDVIAKYLPEGPPYYPEDQITDR  185 (292)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            9999999999999888865444444444

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=8.1e-21  Score=150.45  Aligned_cols=160  Identities=18%  Similarity=0.196  Sum_probs=107.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc----------
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------   79 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----------   79 (199)
                      ....++|+++|.+|+|||||+|+|+..... ...+..|++.......+...+..+.+|||||..+.....          
T Consensus       169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~-~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       169 EDGPIKIAIIGRPNVGKSTLVNALLGEERV-IVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHCCCee-ecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHH
Confidence            345689999999999999999998754421 122334444444433333334578999999976543221          


Q ss_pred             -cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHHH-HHHHH----cCCcEEEe
Q 029077           80 -DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRK----KNLQYYEI  152 (199)
Q Consensus        80 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~~-~~~~~----~~~~~~~~  152 (199)
                       ..+++.+|++++|+|++++.+.+... +...+..  .++|+++|+||+|+.+ .....+.. .+...    ..++++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~  324 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFI  324 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEE
Confidence             23578899999999999887665543 2222222  3789999999999972 21111111 11111    34789999


Q ss_pred             ccCCCCChHHHHHHHHHHHhC
Q 029077          153 SAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      ||++|.|++++|.++.+.+..
T Consensus       325 SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       325 SALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999887653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.87  E-value=1.5e-21  Score=125.94  Aligned_cols=157  Identities=20%  Similarity=0.313  Sum_probs=126.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ..+.+||+++|-.++|||||+.. +.+..+....||.|+....+.+.   .++++++||.+|+...+..+..|+.+.|++
T Consensus        14 t~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~~---g~f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEYD---GTFHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEeec---CcEEEEEEecCCccccchhhhhhhhccceE
Confidence            36789999999999999999998 55666677889999887777664   679999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHH-----HHHHHcCCcEEEeccCCCCChHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      |+|+|.+|..-|+++..-+.++....  ..+|+++..||.|+.-....++..     ...+.....+.+||+++++|+..
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~d  169 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTD  169 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence            99999999988988777666665543  579999999999986544333322     12223345688999999999988


Q ss_pred             HHHHHHHH
Q 029077          163 PFLYLARK  170 (199)
Q Consensus       163 ~~~~i~~~  170 (199)
                      -..++.+.
T Consensus       170 g~~wv~sn  177 (185)
T KOG0074|consen  170 GSDWVQSN  177 (185)
T ss_pred             cchhhhcC
Confidence            77777654

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=7e-21  Score=147.45  Aligned_cols=162  Identities=15%  Similarity=0.097  Sum_probs=113.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc-EEEEEEEeCCCcccccc-------cccccccCC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-------LRDGYYIHG   86 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-------~~~~~~~~~   86 (199)
                      .|+|+|.+|||||||+|+|.....  ...+..++|.......+... ...+.++|+||......       .....+..+
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            799999999999999999775432  33333444444444433323 34689999999643211       112246789


Q ss_pred             cEEEEEEeCC---ChhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHHH-HHHHHHcC--CcEEEeccCCC
Q 029077           87 QCAIIMFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKN--LQYYEISAKSN  157 (199)
Q Consensus        87 d~~i~v~d~~---~~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~~-~~~~~~~~--~~~~~~s~~~~  157 (199)
                      +++++|+|++   +...+.....|...+..+.   .++|+++|+||+|+.+.....+. ..+.+..+  ..++.+||+++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            9999999988   4455666677777776654   36899999999999754322222 23444433  36899999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCc
Q 029077          158 YNFEKPFLYLARKLAGDPNLH  178 (199)
Q Consensus       158 ~~v~~~~~~i~~~~~~~~~~~  178 (199)
                      .|++++++.|.+.+.+.+.++
T Consensus       319 ~GIdeLl~~I~~~L~~~~~~~  339 (390)
T PRK12298        319 LGVKELCWDLMTFIEENPREE  339 (390)
T ss_pred             cCHHHHHHHHHHHhhhCcccC
Confidence            999999999999998776543

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=8.4e-21  Score=149.65  Aligned_cols=160  Identities=16%  Similarity=0.118  Sum_probs=108.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc----ccc---ccccccCC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGL---RDGYYIHG   86 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~---~~~~~~~~   86 (199)
                      ..|+|+|.++||||||+|+|......  .....+++..+....+......+.+||+||....    ..+   ....+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            48999999999999999997754321  1223334444444444445578999999996321    111   12235789


Q ss_pred             cEEEEEEeCCCh----hhHhcHHHHHHHHHhhc------------CCCcEEEEEeCCCCCCccccHHH-HHHHHHcCCcE
Q 029077           87 QCAIIMFDVTAR----LTYKNVPTWHRDLCRVC------------ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQY  149 (199)
Q Consensus        87 d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~------------~~~p~iiv~~K~D~~~~~~~~~~-~~~~~~~~~~~  149 (199)
                      +++++|+|+++.    ..+..+..+..++..+.            .++|.|+|+||+|+.+.....+. .......++++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V  317 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV  317 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence            999999999753    23444555555554432            36899999999999754322222 22334457899


Q ss_pred             EEeccCCCCChHHHHHHHHHHHhCCC
Q 029077          150 YEISAKSNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~i~~~~~~~~  175 (199)
                      +++||+++.|+++++.+|.+.+...+
T Consensus       318 f~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        318 FEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999999886543

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.86  E-value=8.4e-21  Score=133.38  Aligned_cols=150  Identities=15%  Similarity=0.123  Sum_probs=97.5

Q ss_pred             CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----------c
Q 029077            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------F   75 (199)
Q Consensus         6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~   75 (199)
                      .+.+.....+|+++|.+|+|||||++++....+...+.++.|.+.....+..++   .+.+||+||...          +
T Consensus        11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~   87 (179)
T TIGR03598        11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKW   87 (179)
T ss_pred             hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHH
Confidence            345567788999999999999999999886654455555666554433333332   689999999532          2


Q ss_pred             ccccccccc---CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cHHHHHHHHHcC--
Q 029077           76 GGLRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN--  146 (199)
Q Consensus        76 ~~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~~~~~~~~~~~--  146 (199)
                      ......+++   .++++++|+|++++.+..... +...+..  .++|+++++||+|+.+...    ..+..+.....+  
T Consensus        88 ~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~  164 (179)
T TIGR03598        88 QKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD  164 (179)
T ss_pred             HHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence            222223443   457999999998754433332 2233322  3789999999999875321    122223344433  


Q ss_pred             CcEEEeccCCCCChH
Q 029077          147 LQYYEISAKSNYNFE  161 (199)
Q Consensus       147 ~~~~~~s~~~~~~v~  161 (199)
                      ..++++||++|.|++
T Consensus       165 ~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       165 PSVQLFSSLKKTGID  179 (179)
T ss_pred             CceEEEECCCCCCCC
Confidence            479999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.86  E-value=3.9e-20  Score=149.69  Aligned_cols=156  Identities=13%  Similarity=0.135  Sum_probs=106.3

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      ...+..+|+++|+.++|||||+++|....+.....+....+.....+...+. ..+.+|||||++.|...+...+..+|+
T Consensus        83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDi  161 (587)
T TIGR00487        83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDI  161 (587)
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCE
Confidence            4467789999999999999999998876654433322222222222333222 278999999999998888888899999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHH-------c--CCcEEEeccCCCCC
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------K--NLQYYEISAKSNYN  159 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~-------~--~~~~~~~s~~~~~~  159 (199)
                      +++|+|+++...-+....+ ....  ..++|+++++||+|+.+... .+....+..       +  ..+++++||++|.|
T Consensus       162 aILVVda~dgv~~qT~e~i-~~~~--~~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       162 VVLVVAADDGVMPQTIEAI-SHAK--AANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEEEEECCCCCCHhHHHHH-HHHH--HcCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            9999999875322222222 1111  24799999999999965321 111122111       1  24699999999999


Q ss_pred             hHHHHHHHHH
Q 029077          160 FEKPFLYLAR  169 (199)
Q Consensus       160 v~~~~~~i~~  169 (199)
                      +++++.+|..
T Consensus       238 I~eLl~~I~~  247 (587)
T TIGR00487       238 IDELLDMILL  247 (587)
T ss_pred             hHHHHHhhhh
Confidence            9999998874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01895 EngA2 EngA2 subfamily

Probab=99.86  E-value=3.2e-20  Score=129.42  Aligned_cols=154  Identities=19%  Similarity=0.206  Sum_probs=98.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc-----------ccc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RDG   81 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~~   81 (199)
                      .++|+++|.+|+|||||+++++....... ....+.+.......+......+.+||+||.......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~   80 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK   80 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence            57999999999999999999876542211 111122222211222223345789999996543110           122


Q ss_pred             cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc--ccHHH-HHHHHHc----CCcEEEecc
Q 029077           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQ-VTFHRKK----NLQYYEISA  154 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~--~~~~~-~~~~~~~----~~~~~~~s~  154 (199)
                      .+..+|++++|+|++++.+..... +...+..  .+.|+++++||+|+.+..  ..... ..+.+..    ..+++++|+
T Consensus        81 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (174)
T cd01895          81 AIERADVVLLVIDATEGITEQDLR-IAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA  157 (174)
T ss_pred             HHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence            356899999999999876654332 2222222  378999999999997642  22211 1222222    367999999


Q ss_pred             CCCCChHHHHHHHHHH
Q 029077          155 KSNYNFEKPFLYLARK  170 (199)
Q Consensus       155 ~~~~~v~~~~~~i~~~  170 (199)
                      +++.|+.++++++.+.
T Consensus       158 ~~~~~i~~~~~~l~~~  173 (174)
T cd01895         158 LTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cCCCCHHHHHHHHHHh
Confidence            9999999999988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.85  E-value=3.8e-21  Score=136.15  Aligned_cols=158  Identities=19%  Similarity=0.174  Sum_probs=106.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCC--C--------------ccccceeEEEeeEEEEec--CcEEEEEEEeCCCcc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--K--------------KYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQE   73 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~   73 (199)
                      +..+|+++|+.++|||||+++|+.....  .              ......+.+.......+.  .....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            5689999999999999999998743211  1              000112222222222233  567899999999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH---HHH-HHHHHc----
Q 029077           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQV-TFHRKK----  145 (199)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~---~~~-~~~~~~----  145 (199)
                      .|.......+..+|++|+|+|+.++...+. ...+..+..  .++|+++|+||+|+.......   +.. .+.+..    
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~--~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~  158 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE--LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG  158 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH--TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             ceeecccceecccccceeeeeccccccccc-ccccccccc--cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence            888888788899999999999987643322 222223333  388999999999998432222   111 232222    


Q ss_pred             --CCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          146 --NLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       146 --~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                        .++++.+||.+|.|+.++++.|.+.+.
T Consensus       159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  159 EEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence              257999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK11058 GTPase HflX; Provisional

Probab=99.85  E-value=4e-20  Score=144.82  Aligned_cols=157  Identities=17%  Similarity=0.126  Sum_probs=103.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC--ccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc--cccccc------cc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--GGLRDG------YY   83 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~------~~   83 (199)
                      .+|+++|.+|||||||+|+|.......  .+..|..  .........+ ...+.+|||+|..+.  ...+..      .+
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld--~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~  274 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLD--PTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQET  274 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcC--CceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence            589999999999999999987644321  1112222  1122222222 226789999997331  122222      35


Q ss_pred             cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCc-EEEeccCCCCChH
Q 029077           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFE  161 (199)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~  161 (199)
                      ..+|++++|+|++++.++..+..|...+.... .+.|+++|+||+|+.+.....  ... ...+.+ ++++||++|.|++
T Consensus       275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~-~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDR-DEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHH-HhcCCCceEEEeCCCCCCHH
Confidence            78999999999999877776655544444332 479999999999986432111  111 123444 5889999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 029077          162 KPFLYLARKLAGDPN  176 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~  176 (199)
                      +++++|.+.+.....
T Consensus       352 eL~e~I~~~l~~~~~  366 (426)
T PRK11058        352 LLFQALTERLSGEVA  366 (426)
T ss_pred             HHHHHHHHHhhhccE
Confidence            999999998865433

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=2.1e-20  Score=148.10  Aligned_cols=153  Identities=20%  Similarity=0.189  Sum_probs=105.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--------ccccccccccCC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIHG   86 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~   86 (199)
                      +|+++|.+|||||||+|+|..+. ........|++...........+..+.+|||||...        +......+++.+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a   79 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA   79 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence            58999999999999999987654 223334455554444443333456799999999632        233344567899


Q ss_pred             cEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cEEEeccCCCCChHHHHH
Q 029077           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~  165 (199)
                      |++++|+|+.++.+... ..+...+.+  .++|+++|+||+|+.+.....  .+ ....++ .++++||..|.|+.++++
T Consensus        80 d~vl~vvD~~~~~~~~d-~~i~~~l~~--~~~piilVvNK~D~~~~~~~~--~~-~~~lg~~~~~~vSa~~g~gv~~ll~  153 (429)
T TIGR03594        80 DVILFVVDGREGLTPED-EEIAKWLRK--SGKPVILVANKIDGKKEDAVA--AE-FYSLGFGEPIPISAEHGRGIGDLLD  153 (429)
T ss_pred             CEEEEEEeCCCCCCHHH-HHHHHHHHH--hCCCEEEEEECccCCcccccH--HH-HHhcCCCCeEEEeCCcCCChHHHHH
Confidence            99999999987543222 112222333  278999999999987543222  22 234555 699999999999999999


Q ss_pred             HHHHHHhCC
Q 029077          166 YLARKLAGD  174 (199)
Q Consensus       166 ~i~~~~~~~  174 (199)
                      .+.+.+...
T Consensus       154 ~i~~~l~~~  162 (429)
T TIGR03594       154 AILELLPEE  162 (429)
T ss_pred             HHHHhcCcc
Confidence            999887543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=5.8e-20  Score=152.66  Aligned_cols=155  Identities=14%  Similarity=0.141  Sum_probs=117.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc----------c
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------D   80 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----------~   80 (199)
                      ++.++|+++|.+|||||||+|++.+...  ...+..|+++......+...+..+.+||+||...+....          .
T Consensus         1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~   78 (772)
T PRK09554          1 MKKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (772)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence            4568999999999999999999875443  334457777777777777778899999999987654321          1


Q ss_pred             cc--ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHHHHHHHHcCCcEEEeccCCC
Q 029077           81 GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSN  157 (199)
Q Consensus        81 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                      .+  ...+|++++|+|+++.+..   ..+..++.+.  ++|+++++||+|+.+ +....+...+.+..+++++++|+.+|
T Consensus        79 ~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         79 HYILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HHHhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecC
Confidence            12  2478999999999886542   2344444443  799999999999864 34444455677888999999999999


Q ss_pred             CChHHHHHHHHHHHh
Q 029077          158 YNFEKPFLYLARKLA  172 (199)
Q Consensus       158 ~~v~~~~~~i~~~~~  172 (199)
                      .|++++++.+.+...
T Consensus       154 ~GIdeL~~~I~~~~~  168 (772)
T PRK09554        154 RGIEALKLAIDRHQA  168 (772)
T ss_pred             CCHHHHHHHHHHhhh
Confidence            999999998887653

>COG1159 Era GTPase [General function prediction only]

Probab=99.85  E-value=3.7e-20  Score=134.76  Aligned_cols=173  Identities=16%  Similarity=0.133  Sum_probs=124.2

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc--------ccc
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRD   80 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~   80 (199)
                      ..++...|+++|.|++|||||+|++++. -....++...+|+..+..-+...+.++.+.||||...-+.        ...
T Consensus         2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~   80 (298)
T COG1159           2 MKFKSGFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAAR   80 (298)
T ss_pred             CCceEEEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence            3467788999999999999999996644 3345556666777777777777789999999999543222        223


Q ss_pred             ccccCCcEEEEEEeCCChhhHhcHHHH-HHHHHhhcCCCcEEEEEeCCCCCCcccc-HHHHHHHHHc-C-CcEEEeccCC
Q 029077           81 GYYIHGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKK-N-LQYYEISAKS  156 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~l~~~~~~~p~iiv~~K~D~~~~~~~-~~~~~~~~~~-~-~~~~~~s~~~  156 (199)
                      ..+..+|++++|+|+++...  ....+ ++.+..  .+.|+++++||.|....... ....+.+... . ...+++||+.
T Consensus        81 ~sl~dvDlilfvvd~~~~~~--~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~  156 (298)
T COG1159          81 SALKDVDLILFVVDADEGWG--PGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALK  156 (298)
T ss_pred             HHhccCcEEEEEEeccccCC--ccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccc
Confidence            34788999999999987432  22222 333333  36899999999998775552 3333333332 2 3589999999


Q ss_pred             CCChHHHHHHHHHHHhCCCCCceecCCCCC
Q 029077          157 NYNFEKPFLYLARKLAGDPNLHFVESPALA  186 (199)
Q Consensus       157 ~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~  186 (199)
                      |.|++.+.+.+...+.+.+.+.--|.-+..
T Consensus       157 g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~  186 (298)
T COG1159         157 GDNVDTLLEIIKEYLPEGPWYYPEDQITDR  186 (298)
T ss_pred             cCCHHHHHHHHHHhCCCCCCcCChhhccCC
Confidence            999999999999999988877655544444

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.85  E-value=3.4e-20  Score=150.83  Aligned_cols=158  Identities=14%  Similarity=0.160  Sum_probs=113.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcC--CCC-----Ccc------ccceeEEEeeEEEEe-----cCcEEEEEEEeCCCccc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTG--EFE-----KKY------EPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~--~~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~   74 (199)
                      .-+++++|+.++|||||+.+|+..  ...     ..+      ..+.|.+.......+     ++..+.+.+|||||+..
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            348999999999999999998752  111     111      123454444322222     45578999999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCc---EEE
Q 029077           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ---YYE  151 (199)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~---~~~  151 (199)
                      |...+..++..+|++|+|+|++++...+....|.....   .+.|+++|+||+|+.+........++....++.   +++
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~  163 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVL  163 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEE
Confidence            98888888999999999999998765555555543321   378999999999987543222222334444543   899


Q ss_pred             eccCCCCChHHHHHHHHHHHhC
Q 029077          152 ISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      +||++|.|+.+++++|.+.+..
T Consensus       164 iSAktG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        164 VSAKTGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             EecCCCCCHHHHHHHHHHhCcc
Confidence            9999999999999999988753

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.85  E-value=9.6e-20  Score=147.94  Aligned_cols=153  Identities=18%  Similarity=0.101  Sum_probs=107.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC---CCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      +.|+++|+.++|||||+++|.+.   .+..+..++...+.....+..+  +..+.+||+||++.|...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~--~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP--DYRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC--CEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            47999999999999999998742   2233333333333333333333  378999999999998888888889999999


Q ss_pred             EEEeCCCh---hhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCcccc----HHHHHHHHHc----CCcEEEeccCCCC
Q 029077           91 IMFDVTAR---LTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKK----NLQYYEISAKSNY  158 (199)
Q Consensus        91 ~v~d~~~~---~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~----~~~~~~~~~~----~~~~~~~s~~~~~  158 (199)
                      +|+|++++   .+.+.+    ..+..  .++| +++|+||+|+.+....    .+...+.+..    +.+++++|+++|.
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~  152 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ  152 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence            99999984   333222    12222  2677 9999999999764321    1223444433    4789999999999


Q ss_pred             ChHHHHHHHHHHHhCC
Q 029077          159 NFEKPFLYLARKLAGD  174 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~~  174 (199)
                      |+++++..|.+.+...
T Consensus       153 GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       153 GIGELKKELKNLLESL  168 (581)
T ss_pred             CchhHHHHHHHHHHhC
Confidence            9999999988776543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.84  E-value=2.8e-19  Score=117.06  Aligned_cols=167  Identities=20%  Similarity=0.328  Sum_probs=130.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeEEEeeEEEEe-cCcEEEEEEEeCCCcccc-cccccccccCC
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKF-GGLRDGYYIHG   86 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~   86 (199)
                      .+..||+++|-.++|||+|+.+++.+...  .++.+|.. +.+...+.. .+..-.+.++||.|.... ..+...|+.-+
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a   85 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA   85 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence            34579999999999999999998876653  45566665 233333322 233457899999998776 67778899999


Q ss_pred             cEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc--cccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      |++++||+..+++||+.+......|....  ..+|+++++||.|+.+.  ....-...|++...+..+++++.+...+-+
T Consensus        86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~e  165 (198)
T KOG3883|consen   86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYE  165 (198)
T ss_pred             ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhh
Confidence            99999999999999998877666666543  46899999999999753  233344578988899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCc
Q 029077          163 PFLYLARKLAGDPNLH  178 (199)
Q Consensus       163 ~~~~i~~~~~~~~~~~  178 (199)
                      -|..++..+...+...
T Consensus       166 pf~~l~~rl~~pqskS  181 (198)
T KOG3883|consen  166 PFTYLASRLHQPQSKS  181 (198)
T ss_pred             HHHHHHHhccCCcccc
Confidence            9999999887655443

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=4.6e-20  Score=146.38  Aligned_cols=149  Identities=23%  Similarity=0.184  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc--------cccccccccC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGYYIH   85 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~~~   85 (199)
                      .+|+++|.+|||||||+|+|..... .......|++...........+..+.+|||||....        ......++..
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~-~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~   80 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRD-AIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE   80 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            5899999999999999999875543 112223343332222222223478999999998761        2223445789


Q ss_pred             CcEEEEEEeCCChhhHh--cHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCc-EEEeccCCCCChHH
Q 029077           86 GQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEK  162 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~  162 (199)
                      +|++++|+|++++.+..  .+..|+..   .  +.|+++|+||+|+.+..  ....++ ...++. ++++||.+|.|+.+
T Consensus        81 ad~il~vvd~~~~~~~~~~~~~~~l~~---~--~~piilv~NK~D~~~~~--~~~~~~-~~lg~~~~~~iSa~~g~gv~~  152 (435)
T PRK00093         81 ADVILFVVDGRAGLTPADEEIAKILRK---S--NKPVILVVNKVDGPDEE--ADAYEF-YSLGLGEPYPISAEHGRGIGD  152 (435)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHH---c--CCcEEEEEECccCccch--hhHHHH-HhcCCCCCEEEEeeCCCCHHH
Confidence            99999999998753322  23333332   2  79999999999976522  112222 344553 89999999999999


Q ss_pred             HHHHHHHHH
Q 029077          163 PFLYLARKL  171 (199)
Q Consensus       163 ~~~~i~~~~  171 (199)
                      +++.+....
T Consensus       153 l~~~I~~~~  161 (435)
T PRK00093        153 LLDAILEEL  161 (435)
T ss_pred             HHHHHHhhC
Confidence            999998733

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.84  E-value=8.2e-20  Score=150.04  Aligned_cols=159  Identities=19%  Similarity=0.209  Sum_probs=109.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccce--eEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI--GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      ..+..+|+++|+.++|||||+++|....+.....+..  ....+......++....+.+|||||++.|...+..++..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            4566799999999999999999987655543222211  11222333333445689999999999999888888889999


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHH------HHHcC--CcEEEeccCCCCC
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF------HRKKN--LQYYEISAKSNYN  159 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~------~~~~~--~~~~~~s~~~~~~  159 (199)
                      ++|+|+|++++...+....+. .+.  ..++|+++++||+|+.+.....-...+      ....+  ++++++||++|.|
T Consensus       321 iaILVVDA~dGv~~QT~E~I~-~~k--~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~G  397 (742)
T CHL00189        321 IAILIIAADDGVKPQTIEAIN-YIQ--AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTN  397 (742)
T ss_pred             EEEEEEECcCCCChhhHHHHH-HHH--hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCC
Confidence            999999998754333222221 222  247899999999999763221111111      12222  6799999999999


Q ss_pred             hHHHHHHHHHHH
Q 029077          160 FEKPFLYLARKL  171 (199)
Q Consensus       160 v~~~~~~i~~~~  171 (199)
                      +.+++.+|....
T Consensus       398 IdeLle~I~~l~  409 (742)
T CHL00189        398 IDKLLETILLLA  409 (742)
T ss_pred             HHHHHHhhhhhh
Confidence            999999987753

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=1.9e-19  Score=142.85  Aligned_cols=158  Identities=16%  Similarity=0.142  Sum_probs=107.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc-----------c
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------R   79 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~   79 (199)
                      ...++|+++|.+|+|||||+|+|+.... ....+..|++.......+...+..+.+|||||.......           .
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEER-VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            4579999999999999999999775432 122334455555544444344567889999996432211           1


Q ss_pred             cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HH----HHHcCCcEEEecc
Q 029077           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQYYEISA  154 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~----~~~~~~~~~~~s~  154 (199)
                      ..+++.+|++++|+|++++.+.+... +...+..  .++|+++|+||+|+.+.....+.. .+    .....++++++||
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA  326 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA  326 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence            23567899999999999876655433 2222222  378999999999997432222111 11    1223578999999


Q ss_pred             CCCCChHHHHHHHHHHHh
Q 029077          155 KSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       155 ~~~~~v~~~~~~i~~~~~  172 (199)
                      ++|.|+.+++..+.+...
T Consensus       327 ~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        327 LTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999887664

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=1.1e-20  Score=126.09  Aligned_cols=160  Identities=23%  Similarity=0.407  Sum_probs=122.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc---CCC----CCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLT---GEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY   83 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   83 (199)
                      +..+.|+++|..++|||||+.....   +.+    +..-.+|.|.....+.+    ....+.+||.+|++..++++..|+
T Consensus        15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHHHHH
Confidence            3467899999999999999986332   111    12334455544444333    467899999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHH---HHH---HcCCcEEEeccC
Q 029077           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT---FHR---KKNLQYYEISAK  155 (199)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~---~~~---~~~~~~~~~s~~  155 (199)
                      ..++++|+++|+++++.|+.....+..+...  ..+.|+++..||.|+++.....+...   .+.   ....++..+||.
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal  170 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL  170 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence            9999999999999999888766555544332  36899999999999998665554332   222   334679999999


Q ss_pred             CCCChHHHHHHHHHHHhCC
Q 029077          156 SNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       156 ~~~~v~~~~~~i~~~~~~~  174 (199)
                      +|+|+++-..|+.+.+..+
T Consensus       171 ~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  171 TGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hcccHHHHHHHHHHHHhhc
Confidence            9999999999999999877

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.83  E-value=2.9e-19  Score=148.02  Aligned_cols=158  Identities=14%  Similarity=0.162  Sum_probs=107.6

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      ....+...|+++|+.++|||||+++|..+.+.....+  |.+.....+.+...+..+.+|||||++.|...+...+..+|
T Consensus       285 ~~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~--GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aD  362 (787)
T PRK05306        285 DLVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAG--GITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTD  362 (787)
T ss_pred             ccccCCCEEEEECCCCCCHHHHHHHHHhCCccccccC--ceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCC
Confidence            3456778999999999999999999876555433222  22222212222223467899999999999888888889999


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc---cHHHHH---HHHHcC--CcEEEeccCCCCC
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVT---FHRKKN--LQYYEISAKSNYN  159 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~---~~~~~~---~~~~~~--~~~~~~s~~~~~~  159 (199)
                      ++|+|+|++++..-+....|. ...  ..++|+++++||+|+.+...   ..+...   +...++  ++++++||++|.|
T Consensus       363 iaILVVdAddGv~~qT~e~i~-~a~--~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G  439 (787)
T PRK05306        363 IVVLVVAADDGVMPQTIEAIN-HAK--AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG  439 (787)
T ss_pred             EEEEEEECCCCCCHhHHHHHH-HHH--hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence            999999998853222222221 111  24799999999999965321   111111   122222  6799999999999


Q ss_pred             hHHHHHHHHHH
Q 029077          160 FEKPFLYLARK  170 (199)
Q Consensus       160 v~~~~~~i~~~  170 (199)
                      +.+++++|...
T Consensus       440 I~eLle~I~~~  450 (787)
T PRK05306        440 IDELLEAILLQ  450 (787)
T ss_pred             chHHHHhhhhh
Confidence            99999998753

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.83  E-value=1.7e-19  Score=150.07  Aligned_cols=156  Identities=24%  Similarity=0.202  Sum_probs=107.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc--------ccccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGY   82 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~   82 (199)
                      ....+|+++|.+|||||||+|+|+.... ....++.|++...........+..+.+|||+|....        ......+
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            3456899999999999999999875432 334456676666655544444567899999997531        1222345


Q ss_pred             ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cEEEeccCCCCChH
Q 029077           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFE  161 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~  161 (199)
                      +..+|++++|+|+++...... ..|...+..  .++|+++|+||+|+.+...  ...++.. .+. ..+++||++|.|+.
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~--~~~~~~~-lg~~~~~~iSA~~g~GI~  425 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQASEY--DAAEFWK-LGLGEPYPISAMHGRGVG  425 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccccchh--hHHHHHH-cCCCCeEEEECCCCCCch
Confidence            789999999999986422111 134444443  4899999999999865321  1122222 232 36789999999999


Q ss_pred             HHHHHHHHHHhC
Q 029077          162 KPFLYLARKLAG  173 (199)
Q Consensus       162 ~~~~~i~~~~~~  173 (199)
                      +++++|++.+..
T Consensus       426 eLl~~i~~~l~~  437 (712)
T PRK09518        426 DLLDEALDSLKV  437 (712)
T ss_pred             HHHHHHHHhccc
Confidence            999999998854

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.83  E-value=2.5e-19  Score=145.70  Aligned_cols=145  Identities=14%  Similarity=0.111  Sum_probs=102.5

Q ss_pred             cCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc------ccccc--cCCcEEEE
Q 029077           20 GDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAII   91 (199)
Q Consensus        20 G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i~   91 (199)
                      |.+|||||||+|++.+.......  ..|++.......+..++..+.+||+||...+...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n--~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGN--WPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecC--CCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            89999999999998766543332  3444444333333333456899999998776543      22232  47899999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      |+|+++.+.   ...+..++.+  .++|+++|+||+|+.+. ....+...+++..+++++++||++|.|++++++++.+.
T Consensus        79 VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~  153 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA  153 (591)
T ss_pred             EecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            999987432   2233333333  37999999999998653 33334557778889999999999999999999999876


Q ss_pred             H
Q 029077          171 L  171 (199)
Q Consensus       171 ~  171 (199)
                      .
T Consensus       154 ~  154 (591)
T TIGR00437       154 I  154 (591)
T ss_pred             h
Confidence            4

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.83  E-value=1.4e-19  Score=142.94  Aligned_cols=155  Identities=20%  Similarity=0.177  Sum_probs=104.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcC--CCCC---------------------------ccccceeEEEeeEEEEecCc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEK---------------------------KYEPTIGVEVHPLDFFTNCG   60 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   60 (199)
                      +.+.++|+++|+.++|||||+++|+..  ....                           ......|++.......+...
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            567899999999999999999998732  1110                           01124566666666666677


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc------
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------  134 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~------  134 (199)
                      ++.+.+|||||++.+.......+..+|++++|+|+++...+.....+...+.......|+++++||+|+.+...      
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~  162 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV  162 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence            88999999999988766555557899999999999873222222222222223223346899999999975211      


Q ss_pred             cHHHHHHHHHcC-----CcEEEeccCCCCChHHHH
Q 029077          135 KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF  164 (199)
Q Consensus       135 ~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~  164 (199)
                      ..+...+++..+     .+++++||++|.|+.+..
T Consensus       163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            112234444444     469999999999998743

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=3.6e-20  Score=119.98  Aligned_cols=158  Identities=22%  Similarity=0.348  Sum_probs=120.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      ...+|+++|-.|+||||++-++..+.. ....|+.|.....+.+    ++.++++||.+|+-..+..++.|+.+.|.+|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            778999999999999999988554433 3455677766555544    78999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHH-HHHHHHhh-cCCCcEEEEEeCCCCCCccccHHHH-----HHHHHcCCcEEEeccCCCCChHHHH
Q 029077           92 MFDVTARLTYKNVPT-WHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        92 v~d~~~~~s~~~~~~-~~~~l~~~-~~~~p~iiv~~K~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      |+|.+|+........ ++..+.+. ..+..++++.||.|...+....+..     .-.+...+.++++||.+|.|+++.+
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~  171 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM  171 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence            999999876544333 34444333 2456677888999998755444332     2233344779999999999999999


Q ss_pred             HHHHHHHhCC
Q 029077          165 LYLARKLAGD  174 (199)
Q Consensus       165 ~~i~~~~~~~  174 (199)
                      +|+.+.+.+.
T Consensus       172 DWL~~~l~~~  181 (182)
T KOG0072|consen  172 DWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHhcc
Confidence            9999987653

>cd00880 Era_like Era (E

Probab=99.82  E-value=2.8e-19  Score=122.71  Aligned_cols=149  Identities=17%  Similarity=0.212  Sum_probs=100.3

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC-cEEEEEEEeCCCcccccccc-------cccccCCcEE
Q 029077           18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLR-------DGYYIHGQCA   89 (199)
Q Consensus        18 viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~-------~~~~~~~d~~   89 (199)
                      ++|+.|+|||||++++....... .....+.+.......... ....+.+||++|........       ..++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAI-VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccc-cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            58999999999999977543321 112222222222222221 25689999999977654333       3467899999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH-----HHHHHHcCCcEEEeccCCCCChHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      ++|+|+.+........ +......  .+.|+++|+||.|+.........     .........+++++|+.++.|+++++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~  156 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR  156 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence            9999999876655443 2333322  48999999999998764333322     12333446789999999999999999


Q ss_pred             HHHHHH
Q 029077          165 LYLARK  170 (199)
Q Consensus       165 ~~i~~~  170 (199)
                      .++.+.
T Consensus       157 ~~l~~~  162 (163)
T cd00880         157 EALIEA  162 (163)
T ss_pred             HHHHhh
Confidence            998875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.82  E-value=3.6e-19  Score=140.63  Aligned_cols=154  Identities=20%  Similarity=0.170  Sum_probs=105.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeeEEEEecCc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG   60 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   60 (199)
                      +.+.++|+++|+.++|||||+++|+.  +....                           ......|.+.......+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            56779999999999999999999874  22211                           01112345555545556666


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCccc-----
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQV-----  134 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-----  134 (199)
                      ++.+.+||+||++.|.......+..+|++++|+|+++++++... ..+...+.......|+++++||+|+.+...     
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~  163 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA  163 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence            78999999999988776666667899999999999987543211 111222333334467899999999964211     


Q ss_pred             -cHHHHHHHHHcC-----CcEEEeccCCCCChHHH
Q 029077          135 -KAKQVTFHRKKN-----LQYYEISAKSNYNFEKP  163 (199)
Q Consensus       135 -~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~  163 (199)
                       ..+...+++..+     ++++++||++|.|+.+.
T Consensus       164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~  198 (426)
T TIGR00483       164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKK  198 (426)
T ss_pred             HHHHHHHHHHHcCCCcccceEEEeecccccccccc
Confidence             122334555544     57999999999999863

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.82  E-value=3.4e-19  Score=127.40  Aligned_cols=116  Identities=17%  Similarity=0.257  Sum_probs=86.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCC-cEEEEEE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG-QCAIIMF   93 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~   93 (199)
                      +|+++|++|||||||+++|..+.+...+.++. ................+.+||+||+.+++.....+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            68999999999999999988877655544332 122222221123457899999999999888888888888 9999999


Q ss_pred             eCCCh-hhHhcHHHHHHHHHhh----cCCCcEEEEEeCCCCCC
Q 029077           94 DVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKN  131 (199)
Q Consensus        94 d~~~~-~s~~~~~~~~~~l~~~----~~~~p~iiv~~K~D~~~  131 (199)
                      |+++. .++.....|+..+...    .++.|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99987 6677666665544322    25899999999999864

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=2.8e-19  Score=148.88  Aligned_cols=157  Identities=16%  Similarity=0.200  Sum_probs=103.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeE--EEEecCcEEEEEEEeCCCcccc----------ccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKF----------GGL   78 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~D~~g~~~~----------~~~   78 (199)
                      ....+|+++|.+|||||||+|+|+..... ......|++....  ...+++  ..+.+|||+|..+.          ...
T Consensus       448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~-~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~  524 (712)
T PRK09518        448 SGLRRVALVGRPNVGKSSLLNQLTHEERA-VVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSL  524 (712)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccc-ccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHH
Confidence            34589999999999999999998866531 1112223333332  233343  45679999996421          111


Q ss_pred             c-cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HHHHH----cCCcEEEe
Q 029077           79 R-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRK----KNLQYYEI  152 (199)
Q Consensus        79 ~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~~~~----~~~~~~~~  152 (199)
                      . ...++.+|++++|+|++++.+.+....+ ..+..  .++|+++|+||+|+.+........ .+...    ...+.+++
T Consensus       525 r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~i  601 (712)
T PRK09518        525 RTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNL  601 (712)
T ss_pred             HHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEE
Confidence            1 2236789999999999988776665433 33333  379999999999997532211111 11111    23467999


Q ss_pred             ccCCCCChHHHHHHHHHHHhC
Q 029077          153 SAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      ||++|.|+++++..+.+.+..
T Consensus       602 SAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        602 SAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             ECCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999998764

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=7.8e-19  Score=121.77  Aligned_cols=149  Identities=16%  Similarity=0.184  Sum_probs=97.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----------cccccccccc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRDGYYI   84 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~~   84 (199)
                      .|+++|.+|||||||++.+..+.......++.+.+........+.   .+.+||++|...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999886666555556665554443333332   889999999533          2222223332


Q ss_pred             ---CCcEEEEEEeCCChhh--HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH----HHHHHHH--HcCCcEEEec
Q 029077           85 ---HGQCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHR--KKNLQYYEIS  153 (199)
Q Consensus        85 ---~~d~~i~v~d~~~~~s--~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~----~~~~~~~--~~~~~~~~~s  153 (199)
                         +.+.+++++|.++..+  ...+..|+...     +.|+++++||+|+.......    ......+  ....+++++|
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  152 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS  152 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence               4578889999876532  22233343332     68999999999986432211    1112222  3446799999


Q ss_pred             cCCCCChHHHHHHHHHHH
Q 029077          154 AKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~  171 (199)
                      ++++.++.+++++|.+.+
T Consensus       153 a~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         153 SLKGQGIDELRALIEKWL  170 (170)
T ss_pred             cCCCCCHHHHHHHHHHhC
Confidence            999999999999988753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.81  E-value=4.4e-19  Score=117.48  Aligned_cols=134  Identities=19%  Similarity=0.261  Sum_probs=90.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----ccccccccccCCcEEE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDGYYIHGQCAI   90 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~~~~d~~i   90 (199)
                      ||+++|+.|||||||+++|.....  .+..|..+.            +.=.++||||.-.    +.........++|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~------------~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIE------------YYDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeE------------ecccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            899999999999999999654322  232232211            1224489999422    2222233456899999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHHHHHHHHcCCc-EEEeccCCCCChHHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~~~~~i~  168 (199)
                      ++.|++++.+.-.     +.+.... ++|+|.|+||.|+.. .........+.+..|+. .|++|+.+|+|++++.++|-
T Consensus        69 ll~dat~~~~~~p-----P~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             EEecCCCCCccCC-----chhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            9999998754321     1222222 789999999999993 33334445566666654 79999999999999988764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK10218 GTP-binding protein; Provisional

Probab=99.81  E-value=2e-18  Score=140.06  Aligned_cols=160  Identities=16%  Similarity=0.199  Sum_probs=117.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc--CCCCCc------------cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG   77 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (199)
                      ..-+|+++|+.++|||||+++|+.  +.+...            ...+.|.+.......+...++.+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            456899999999999999999885  333222            123567777777777777889999999999999998


Q ss_pred             cccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc---HHHHHHHH-------HcCC
Q 029077           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KKNL  147 (199)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~---~~~~~~~~-------~~~~  147 (199)
                      .+..+++.+|++++|+|+++....+....| .....  .++|.++++||+|+.+....   .+..++..       ...+
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l-~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTRFVT-KKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHHHHH-HHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            888899999999999999876433322222 22222  37899999999998753322   22223321       2346


Q ss_pred             cEEEeccCCCC----------ChHHHHHHHHHHHhCC
Q 029077          148 QYYEISAKSNY----------NFEKPFLYLARKLAGD  174 (199)
Q Consensus       148 ~~~~~s~~~~~----------~v~~~~~~i~~~~~~~  174 (199)
                      +++.+|+.+|.          ++..+++.|.+.+...
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            79999999998          5888888888877543

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.81  E-value=7.2e-19  Score=135.08  Aligned_cols=155  Identities=17%  Similarity=0.152  Sum_probs=118.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc--------ccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGY   82 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~   82 (199)
                      ..-+|++++|.||+|||||+|.|+ +.-....+.-.|+|+......++-..+.+.+.||+|...-....        ...
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~-~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALL-GRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHh-cCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            456899999999999999999955 55566777888999999999888889999999999976543333        334


Q ss_pred             ccCCcEEEEEEeCCChhh-HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077           83 YIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      +.++|.+++|+|.+.+.+ .+....+     ....++|+++|.||.|+.........   ....+.+.+.+|+++|.|++
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~~~~-----~~~~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~  365 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLALIE-----LLPKKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLD  365 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHHHHH-----hcccCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHH
Confidence            789999999999998522 1211111     23357999999999999875443322   22234578999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 029077          162 KPFLYLARKLAGD  174 (199)
Q Consensus       162 ~~~~~i~~~~~~~  174 (199)
                      .+.+.|.+.+...
T Consensus       366 ~L~~~i~~~~~~~  378 (454)
T COG0486         366 ALREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887655

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.80  E-value=5.4e-19  Score=135.41  Aligned_cols=153  Identities=18%  Similarity=0.082  Sum_probs=110.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc---------cccccccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYI   84 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~   84 (199)
                      ..|+++|.+|||||||+|||. +.-......+.|+|+..........+..|.++||+|.+...         ......+.
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~-g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~   82 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLT-GRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE   82 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHh-CCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence            579999999999999999965 44456667788888877777666666779999999976432         11234578


Q ss_pred             CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      .+|++|+|+|...+-+-++ ......++  ..++|+++|+||+|....+  ....++.+..--..+.+||..|.|+.+++
T Consensus        83 eADvilfvVD~~~Git~~D-~~ia~~Lr--~~~kpviLvvNK~D~~~~e--~~~~efyslG~g~~~~ISA~Hg~Gi~dLl  157 (444)
T COG1160          83 EADVILFVVDGREGITPAD-EEIAKILR--RSKKPVILVVNKIDNLKAE--ELAYEFYSLGFGEPVPISAEHGRGIGDLL  157 (444)
T ss_pred             hCCEEEEEEeCCCCCCHHH-HHHHHHHH--hcCCCEEEEEEcccCchhh--hhHHHHHhcCCCCceEeehhhccCHHHHH
Confidence            8999999999987543221 11122222  2379999999999987321  22234443333468999999999999999


Q ss_pred             HHHHHHHh
Q 029077          165 LYLARKLA  172 (199)
Q Consensus       165 ~~i~~~~~  172 (199)
                      +.+.+.+.
T Consensus       158 d~v~~~l~  165 (444)
T COG1160         158 DAVLELLP  165 (444)
T ss_pred             HHHHhhcC
Confidence            99999884

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=3.9e-18  Score=115.50  Aligned_cols=159  Identities=21%  Similarity=0.218  Sum_probs=118.1

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCC--------Cccc----cceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------KKYE----PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (199)
                      +...+...||+|+|+.++||||+++.+......        ..+.    .|...++-...+   +.+..+.+++||||++
T Consensus         4 ~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~R   80 (187)
T COG2229           4 AANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQER   80 (187)
T ss_pred             ccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHH
Confidence            345577889999999999999999996643321        0111    112222222222   2347889999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHc--CCcEEEe
Q 029077           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEI  152 (199)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~--~~~~~~~  152 (199)
                      |+-.+..+.+.+.++|+++|.+....+ .....+.-+.... ..|+++..||.|+.+....++..+.....  +.+.++.
T Consensus        81 F~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~-~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~  158 (187)
T COG2229          81 FKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN-PIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEI  158 (187)
T ss_pred             HHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc-CCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeee
Confidence            999999999999999999999998877 3344444444432 29999999999999988877766555554  7899999


Q ss_pred             ccCCCCChHHHHHHHHHH
Q 029077          153 SAKSNYNFEKPFLYLARK  170 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~  170 (199)
                      ++..+++..+.+..+...
T Consensus       159 ~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         159 DATEGEGARDQLDVLLLK  176 (187)
T ss_pred             ecccchhHHHHHHHHHhh
Confidence            999999999988877765

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.80  E-value=5.4e-19  Score=126.96  Aligned_cols=146  Identities=20%  Similarity=0.208  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCc-----------------------------cccceeEEEeeEEEEecCcEEEEE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------------------------YEPTIGVEVHPLDFFTNCGKIRFY   65 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~   65 (199)
                      ||+++|.+|+|||||+++|+...-.-.                             .....|.+.......+...+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            689999999999999999874221100                             001134444444445555667889


Q ss_pred             EEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc------cHHHH
Q 029077           66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQV  139 (199)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~------~~~~~  139 (199)
                      +|||||+..+.......+..+|++++|+|++++..-+.. . ...+.......++++|+||+|+.+...      ..+..
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~-~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~  158 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-R-HSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL  158 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-H-HHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence            999999988766566667899999999999875322111 1 111222222345788899999864221      11222


Q ss_pred             HHHHHcC---CcEEEeccCCCCChHH
Q 029077          140 TFHRKKN---LQYYEISAKSNYNFEK  162 (199)
Q Consensus       140 ~~~~~~~---~~~~~~s~~~~~~v~~  162 (199)
                      .+.+..+   .+++.+||++|.|+.+
T Consensus       159 ~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         159 AFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            4444555   3489999999999975

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.80  E-value=1.4e-18  Score=141.06  Aligned_cols=157  Identities=16%  Similarity=0.237  Sum_probs=114.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc--CCCCCc------------cccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (199)
                      +|+++|+.++|||||+++|+.  +.+...            .....|.+.......+...++.+.+|||||+..|.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            799999999999999999875  333221            122346666665555666778999999999999988888


Q ss_pred             ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc---cHHHHHHHH-------HcCCcEE
Q 029077           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHR-------KKNLQYY  150 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~---~~~~~~~~~-------~~~~~~~  150 (199)
                      .+++.+|++++|+|+++.. ......|+..+...  ++|+++|+||+|+.+...   ..+...+..       ...++++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl  159 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIV  159 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEE
Confidence            8899999999999998753 22233444444443  789999999999865322   222233332       2356899


Q ss_pred             EeccCCCC----------ChHHHHHHHHHHHhCC
Q 029077          151 EISAKSNY----------NFEKPFLYLARKLAGD  174 (199)
Q Consensus       151 ~~s~~~~~----------~v~~~~~~i~~~~~~~  174 (199)
                      ++||++|.          |+..+|+.|.+.+...
T Consensus       160 ~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       160 YASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             echhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence            99999995          7999999999887643

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.80  E-value=2.2e-18  Score=125.41  Aligned_cols=180  Identities=17%  Similarity=0.201  Sum_probs=125.9

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc------------c
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK------------F   75 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------------~   75 (199)
                      +-+.+.++|+++|.+++|||||.|.+++... ........++.......+..++.++.++||||.-.            +
T Consensus        67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv-~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~  145 (379)
T KOG1423|consen   67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKV-SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV  145 (379)
T ss_pred             hhcceEEEEEEEcCCCcchhhhhhHhhCCcc-ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence            3457789999999999999999999775544 33444555666777777777889999999999422            1


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--------------cHHHHHH
Q 029077           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTF  141 (199)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--------------~~~~~~~  141 (199)
                      .......+..+|.+++++|+++....-. ...+..+.. ..+.|-++|.||.|...+..              .....++
T Consensus       146 lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~-ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v  223 (379)
T KOG1423|consen  146 LQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEE-YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV  223 (379)
T ss_pred             hhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHH-HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence            1223445678999999999997332221 122333333 35899999999999643211              1101111


Q ss_pred             HHH-------------cCC----cEEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCccc
Q 029077          142 HRK-------------KNL----QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV  190 (199)
Q Consensus       142 ~~~-------------~~~----~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~  190 (199)
                      ..+             .|.    .+|.+||++|+|++++.++|.......++....+-++.+++++
T Consensus       224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~  289 (379)
T KOG1423|consen  224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEF  289 (379)
T ss_pred             HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHH
Confidence            111             111    2899999999999999999999999999998888888887654

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.80  E-value=4.4e-21  Score=129.44  Aligned_cols=165  Identities=33%  Similarity=0.519  Sum_probs=141.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcE-EEEEEEeCCCcccccccccccccCCcEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ..-++++|+|.-|+|||+++.+++...+...|..++|+++.......+..+ +++.+||+.|++++..+..-+++.+.+.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            455799999999999999999999888888899999988877777666554 6889999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCcccc---HHHHHHHHHcCCc-EEEeccCCCCCh
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK---AKQVTFHRKKNLQ-YYEISAKSNYNF  160 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~~~~---~~~~~~~~~~~~~-~~~~s~~~~~~v  160 (199)
                      ++|||++....|+....|.+.+....     ...|+++..||+|.......   ....++++++++. .+++|++.+.++
T Consensus       103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni  182 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI  182 (229)
T ss_pred             EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence            99999999999999999999987653     23677888899999874333   3445788889875 999999999999


Q ss_pred             HHHHHHHHHHHhCCC
Q 029077          161 EKPFLYLARKLAGDP  175 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~  175 (199)
                      .|.-..+.+++.-+.
T Consensus       183 ~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  183 PEAQRELVEKILVND  197 (229)
T ss_pred             hHHHHHHHHHHHhhc
Confidence            999999998887554

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.80  E-value=3.5e-19  Score=139.12  Aligned_cols=176  Identities=16%  Similarity=0.192  Sum_probs=132.0

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      ..+..+||+++|+.|||||||+-+++...|.....+.......+  ..+....+...+.|++..+..+.....-++++++
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v   82 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV   82 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence            34678999999999999999999999888877665554322222  2223344568899998665555555667899999


Q ss_pred             EEEEEeCCChhhHhcHH-HHHHHHHhhc---CCCcEEEEEeCCCCCCcccc--H-HHHHHHHHcC--CcEEEeccCCCCC
Q 029077           89 AIIMFDVTARLTYKNVP-TWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK--A-KQVTFHRKKN--LQYYEISAKSNYN  159 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~-~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~--~-~~~~~~~~~~--~~~~~~s~~~~~~  159 (199)
                      +.++|+++++++++.+. .|++.+++..   .++|+|+||||.|..+....  + ....+.....  -.+++|||++-.+
T Consensus        83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n  162 (625)
T KOG1707|consen   83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN  162 (625)
T ss_pred             EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence            99999999999999876 6999999887   78999999999998764333  1 1222222221  2489999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCceecCCCCC
Q 029077          160 FEKPFLYLARKLAGDPNLHFVESPALA  186 (199)
Q Consensus       160 v~~~~~~i~~~~~~~~~~~~~~~p~~~  186 (199)
                      +.++|....+++.....-++..++...
T Consensus       163 ~~e~fYyaqKaVihPt~PLyda~~qel  189 (625)
T KOG1707|consen  163 VSELFYYAQKAVIHPTSPLYDAEEQEL  189 (625)
T ss_pred             hHhhhhhhhheeeccCccccccccccc
Confidence            999999888888877766666655544

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.78  E-value=5.8e-18  Score=123.35  Aligned_cols=150  Identities=15%  Similarity=0.055  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc-------cccccccCCc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIHGQ   87 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d   87 (199)
                      +|+++|.+|||||||+++|.+......  ...+.+.......+......+++||+||......       .....++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~--~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVA--AYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcccc--CCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999775432111  1111121122222222457889999999754321       1234678999


Q ss_pred             EEEEEEeCCChhh-HhcHHHHHH-----------------------------------------HHHhh-----------
Q 029077           88 CAIIMFDVTARLT-YKNVPTWHR-----------------------------------------DLCRV-----------  114 (199)
Q Consensus        88 ~~i~v~d~~~~~s-~~~~~~~~~-----------------------------------------~l~~~-----------  114 (199)
                      ++++|+|+++... .+.+...+.                                         -+.++           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            9999999987542 222222111                                         01000           


Q ss_pred             --------------cCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077          115 --------------CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       115 --------------~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                                    ..-+|+++|+||+|+.+...   ...++.  ...++++||.+|.|++++|+.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~---~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE---LDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH---HHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                          11258999999999864321   123333  24689999999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.78  E-value=1.1e-17  Score=118.62  Aligned_cols=146  Identities=16%  Similarity=0.078  Sum_probs=97.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCC--------------CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG   77 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (199)
                      +.++|+++|..++|||||+++|+.....              .......|.+.......+......+.++||||+..+..
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence            3589999999999999999998743100              01112455565555556666677889999999988777


Q ss_pred             cccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCcccc-----HHHHHHHHHc-----C
Q 029077           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKK-----N  146 (199)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~-----~~~~~~~~~~-----~  146 (199)
                      .....+..+|++++|+|++.+..-+. ......+...  ++| +++++||+|+......     .+...+....     +
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            66777889999999999987532221 1222223222  566 7788999998532211     1222333333     3


Q ss_pred             CcEEEeccCCCCCh
Q 029077          147 LQYYEISAKSNYNF  160 (199)
Q Consensus       147 ~~~~~~s~~~~~~v  160 (199)
                      ++++++||++|.+.
T Consensus       158 v~iipiSa~~g~n~  171 (195)
T cd01884         158 TPIVRGSALKALEG  171 (195)
T ss_pred             CeEEEeeCccccCC
Confidence            67999999999885

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.77  E-value=7e-18  Score=132.27  Aligned_cols=160  Identities=16%  Similarity=0.141  Sum_probs=102.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCcccc--ceeEEEeeE----E--------------E--EecC------cEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPL----D--------------F--FTNC------GKI   62 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~----~--------------~--~~~~------~~~   62 (199)
                      ++.++|+++|..++|||||++.|.. .+......  ..|.+...-    .              .  ..+.      ...
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~-~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTG-VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR   80 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhC-eecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence            5679999999999999999998643 22111100  111111100    0              0  0011      146


Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc----HHH
Q 029077           63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQ  138 (199)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~----~~~  138 (199)
                      .+.+||+||++.|...+......+|++++|+|++++.........+..+ ......|+++++||+|+.+....    .+.
T Consensus        81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            7899999999998877777778899999999999753111222222222 22234578999999999753221    111


Q ss_pred             HHHHHHc---CCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          139 VTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       139 ~~~~~~~---~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      ..+....   +.+++++||++|.|+++++++|.+.+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            2233322   567999999999999999999988664

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.77  E-value=7.8e-18  Score=136.26  Aligned_cols=152  Identities=23%  Similarity=0.265  Sum_probs=100.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCc----cccceeEEEeeEEEEe------------cCcEEEEEEEeCCCccccc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFT------------NCGKIRFYCWDTAGQEKFG   76 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~----~~~~~~~~~~~~~~~~------------~~~~~~~~l~D~~g~~~~~   76 (199)
                      .--|+++|+.++|||||+++|....+...    .+.+.|.+........            ......+.+|||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            34699999999999999999876655322    2333343332221110            0011238899999999998


Q ss_pred             ccccccccCCcEEEEEEeCCCh---hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--------------cH---
Q 029077           77 GLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KA---  136 (199)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--------------~~---  136 (199)
                      ..+..+++.+|++++|+|+++.   .++..+.    .+..  .++|+++++||+|+.+...              ..   
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            8888888999999999999874   3333222    2222  3789999999999863100              00   


Q ss_pred             -HH--------HHHHH--------------HcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077          137 -KQ--------VTFHR--------------KKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus       137 -~~--------~~~~~--------------~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                       ..        ..+..              ....+++++||++|.|+++++.+|...
T Consensus       158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence             00        00110              113579999999999999999888654

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.77  E-value=1.3e-17  Score=127.86  Aligned_cols=157  Identities=17%  Similarity=0.196  Sum_probs=114.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc-----------c
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------D   80 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----------~   80 (199)
                      ..+||+++|.|++|||||+|+++ +.......+..|++...+...++...-.+.++||+|..+-....           .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~il-geeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAIL-GEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhc-cCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            57999999999999999999955 55556677788999999988888778889999999965421111           2


Q ss_pred             ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHH--H----HHHHcCCcEEEec
Q 029077           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQV--T----FHRKKNLQYYEIS  153 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~--~----~~~~~~~~~~~~s  153 (199)
                      ..+..++++++|+|++.+-+-+... ....+.+  ...++++|+||+|+-+. ....+..  .    +......+.+.+|
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS  332 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS  332 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence            2366899999999999876544322 1112222  38999999999998654 2222211  2    2222346799999


Q ss_pred             cCCCCChHHHHHHHHHHHh
Q 029077          154 AKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~  172 (199)
                      |++|.++.++|+++.+...
T Consensus       333 A~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         333 ALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             ecCCCChHHHHHHHHHHHH
Confidence            9999999999999887764

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.77  E-value=1e-17  Score=131.30  Aligned_cols=161  Identities=16%  Similarity=0.127  Sum_probs=101.5

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccc--cceeEEEeeE----EEE----------e------c--C----c
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPL----DFF----------T------N--C----G   60 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~--~~~~~~~~~~----~~~----------~------~--~----~   60 (199)
                      ...+.++|+++|+.++|||||+.+|.. .+.....  ...|.+...-    ...          +      +  +    .
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~-~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTG-VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhC-eecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            456789999999999999999998643 2211111  1122222110    000          0      0  0    1


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH---
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---  136 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~---  136 (199)
                      ...+.+||+||++.+..........+|++++|+|++++. ..+....+ ..+ ......|+++|+||+|+.+.....   
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l-~~~~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MAL-DIIGIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHH-HHcCCCcEEEEEEeeccccchhHHHHH
Confidence            367899999999887666655667789999999999643 11111111 112 222234689999999997532221   


Q ss_pred             -HHHHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          137 -KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       137 -~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                       +...+.+.   .+.+++++||++|.|++++++.|.+.+.
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence             12233322   2467999999999999999999988764

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.76  E-value=4e-18  Score=123.33  Aligned_cols=146  Identities=20%  Similarity=0.147  Sum_probs=95.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC--CCC---------------------------CccccceeEEEeeEEEEecCcEEEEE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTG--EFE---------------------------KKYEPTIGVEVHPLDFFTNCGKIRFY   65 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (199)
                      +|+++|+.++|||||+.+|+..  ...                           .......|++.......+......+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            5899999999999999997631  110                           01112345555555556666778999


Q ss_pred             EEeCCCcccccccccccccCCcEEEEEEeCCChhh-------HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc---c-
Q 029077           66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT-------YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---V-  134 (199)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~---~-  134 (199)
                      +||+||+..+.......+..+|++++|+|+++...       .+....+ . +.......|+++++||+|+....   . 
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-L-LARTLGVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-H-HHHHcCCCeEEEEEEccccccccccHHH
Confidence            99999987776666666788999999999998521       1111222 1 22222346899999999997321   1 


Q ss_pred             cH----HHHHHHHHcC-----CcEEEeccCCCCChHH
Q 029077          135 KA----KQVTFHRKKN-----LQYYEISAKSNYNFEK  162 (199)
Q Consensus       135 ~~----~~~~~~~~~~-----~~~~~~s~~~~~~v~~  162 (199)
                      ..    +...+....+     .+++++||++|.|+.+
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~  195 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE  195 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence            11    1112233333     5699999999999873

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04167 Snu114p Snu114p subfamily

Probab=99.76  E-value=1.8e-17  Score=119.59  Aligned_cols=113  Identities=21%  Similarity=0.243  Sum_probs=78.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCc-----------------cccceeEEEeeEEEEe-----cCcEEEEEEEeCCCc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQ   72 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~   72 (199)
                      +|+++|+.|+|||||+++|+.......                 .....|.+.......+     ++..+.+.+||+||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999875432211                 0112233322222211     345689999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (199)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~  130 (199)
                      ..+......++..+|++++|+|+++..+... ..++.....  .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence            9887777888899999999999987655432 233333322  368999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.76  E-value=3.7e-17  Score=117.84  Aligned_cols=157  Identities=14%  Similarity=0.211  Sum_probs=102.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEe-cCcEEEEEEEeCCCcccccc-----cccccccCCcE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGG-----LRDGYYIHGQC   88 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~-----~~~~~~~~~d~   88 (199)
                      ||+++|+.||||||+.+.+. +++.+.-....|.+...-...+ ....+.+++||+||+..+..     .....++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF-~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIF-HKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHH-S---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHH-cCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            79999999999999999855 4444433344444433333333 24678999999999876433     34667899999


Q ss_pred             EEEEEeCCChh---hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc--------HHHHHHHHHcC---CcEEEecc
Q 029077           89 AIIMFDVTARL---TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKN---LQYYEISA  154 (199)
Q Consensus        89 ~i~v~d~~~~~---s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~--------~~~~~~~~~~~---~~~~~~s~  154 (199)
                      +|+|+|+...+   .+..+...+..+.+..++..+-++.+|+|+......        +...+.+...+   +.++.||.
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI  159 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI  159 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence            99999998443   234455566677778899999999999998642221        12223444555   77999999


Q ss_pred             CCCCChHHHHHHHHHHHhC
Q 029077          155 KSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       155 ~~~~~v~~~~~~i~~~~~~  173 (199)
                      .+ ..+-+.|..+.+.+..
T Consensus       160 ~D-~Sly~A~S~Ivq~LiP  177 (232)
T PF04670_consen  160 WD-ESLYEAWSKIVQKLIP  177 (232)
T ss_dssp             TS-THHHHHHHHHHHTTST
T ss_pred             cC-cHHHHHHHHHHHHHcc
Confidence            98 4788888888888763

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.76  E-value=2.2e-17  Score=129.18  Aligned_cols=152  Identities=13%  Similarity=0.056  Sum_probs=101.1

Q ss_pred             CCCCccCCCceEEEEEcCCCCCHHHHHHHHhcC-----C--C------C-CccccceeEEEeeEEEEecCcEEEEEEEeC
Q 029077            4 PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTG-----E--F------E-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDT   69 (199)
Q Consensus         4 ~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~-----~--~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~   69 (199)
                      ........+.++|+++|..++|||||+++|+..     .  +      . .......|.+.......+...+..+.+||+
T Consensus         3 ~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDt   82 (394)
T TIGR00485         3 KEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDC   82 (394)
T ss_pred             hhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEEC
Confidence            445566788999999999999999999998632     0  0      0 011123555555555566666778999999


Q ss_pred             CCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEE-EEEeCCCCCCcccc-----HHHHHHHH
Q 029077           70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVK-----AKQVTFHR  143 (199)
Q Consensus        70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~i-iv~~K~D~~~~~~~-----~~~~~~~~  143 (199)
                      ||++.|..........+|++++|+|++++...+.. ..+..+..  .++|.+ +++||+|+.+....     .+...+++
T Consensus        83 pGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~  159 (394)
T TIGR00485        83 PGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             CchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence            99988876666666789999999999875322221 22222222  266755 68999998753221     12334454


Q ss_pred             HcC-----CcEEEeccCCCC
Q 029077          144 KKN-----LQYYEISAKSNY  158 (199)
Q Consensus       144 ~~~-----~~~~~~s~~~~~  158 (199)
                      ..+     ++++++|+.+|.
T Consensus       160 ~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       160 EYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             hcCCCccCccEEECcccccc
Confidence            444     689999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.75  E-value=5.5e-17  Score=129.79  Aligned_cols=159  Identities=14%  Similarity=0.122  Sum_probs=120.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc------ccccc-
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY-   83 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~-   83 (199)
                      ++..+|+++|.||||||||+|++.+.+..  .-.-.|+|+......+..+...+.+.|.||.-.....      .+.|+ 
T Consensus         1 ~~~~~valvGNPNvGKTtlFN~LTG~~q~--VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll   78 (653)
T COG0370           1 MKKLTVALVGNPNVGKTTLFNALTGANQK--VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL   78 (653)
T ss_pred             CCcceEEEecCCCccHHHHHHHHhccCce--ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence            35677999999999999999997754432  2335677888888877777778999999995443222      12232 


Q ss_pred             -cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077           84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (199)
Q Consensus        84 -~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                       .+.|+++-|+|+++.+..-.+.   -++.+.  +.|++++.|+.|..+ +.+..+...+.+..|+++++++|++|.|++
T Consensus        79 ~~~~D~ivnVvDAtnLeRnLylt---lQLlE~--g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          79 EGKPDLIVNVVDATNLERNLYLT---LQLLEL--GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             cCCCCEEEEEcccchHHHHHHHH---HHHHHc--CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence             4679999999999875433222   233333  899999999999976 455556678888999999999999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 029077          162 KPFLYLARKLAGDPN  176 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~  176 (199)
                      ++...+.+....+..
T Consensus       154 ~l~~~i~~~~~~~~~  168 (653)
T COG0370         154 ELKRAIIELAESKTT  168 (653)
T ss_pred             HHHHHHHHhcccccc
Confidence            999999887766654

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.75  E-value=8.6e-17  Score=131.29  Aligned_cols=155  Identities=12%  Similarity=0.039  Sum_probs=100.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC---CCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      +-|+++|..++|||||+++|.+..   +..+.  ..|.+.......+. .....+.+||+||++.|.......+..+|++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~--~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~   78 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEK--KRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHA   78 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcc--cCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence            358999999999999999976422   22222  22333222211221 1234589999999999877777778899999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCcccc----HHHHHHHHHcC---CcEEEeccCCCCChH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKKN---LQYYEISAKSNYNFE  161 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~----~~~~~~~~~~~---~~~~~~s~~~~~~v~  161 (199)
                      ++|+|+++...-+.. ..+..+ ... ++| +++|+||+|+.+....    .+...+....+   .+++++|+++|.|++
T Consensus        79 lLVVda~eg~~~qT~-ehl~il-~~l-gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~  155 (614)
T PRK10512         79 LLVVACDDGVMAQTR-EHLAIL-QLT-GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID  155 (614)
T ss_pred             EEEEECCCCCcHHHH-HHHHHH-HHc-CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence            999999874221111 111222 222 455 5789999999753221    12223444333   679999999999999


Q ss_pred             HHHHHHHHHHhC
Q 029077          162 KPFLYLARKLAG  173 (199)
Q Consensus       162 ~~~~~i~~~~~~  173 (199)
                      ++++.|.+....
T Consensus       156 ~L~~~L~~~~~~  167 (614)
T PRK10512        156 ALREHLLQLPER  167 (614)
T ss_pred             HHHHHHHHhhcc
Confidence            999999876543

>PRK12736 elongation factor Tu; Reviewed

Probab=99.74  E-value=6.2e-17  Score=126.52  Aligned_cols=164  Identities=15%  Similarity=0.071  Sum_probs=109.2

Q ss_pred             CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCC--------------CccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (199)
Q Consensus         6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (199)
                      .+....+.++|+++|+.++|||||+++|+.....              .......|.+.......+......+.++|+||
T Consensus         5 ~~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPG   84 (394)
T PRK12736          5 KFDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPG   84 (394)
T ss_pred             hhccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCC
Confidence            3455778899999999999999999998742110              01112455565555556666667889999999


Q ss_pred             cccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccccH-----HHHHHHHHc
Q 029077           72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRKK  145 (199)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~~-----~~~~~~~~~  145 (199)
                      +++|.......+..+|++++|+|+++...-+.. ..+..+...  ++| +|+++||+|+.+.....     +...+....
T Consensus        85 h~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~  161 (394)
T PRK12736         85 HADYVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY  161 (394)
T ss_pred             HHHHHHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence            988776666667889999999999875322221 222222222  677 67889999987422111     222333334


Q ss_pred             C-----CcEEEeccCCCC--------ChHHHHHHHHHHHh
Q 029077          146 N-----LQYYEISAKSNY--------NFEKPFLYLARKLA  172 (199)
Q Consensus       146 ~-----~~~~~~s~~~~~--------~v~~~~~~i~~~~~  172 (199)
                      +     ++++++|+++|.        ++.++++.+.+.+.
T Consensus       162 ~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        162 DFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             CCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            3     579999999983        46777777766654

>PRK12735 elongation factor Tu; Reviewed

Probab=99.74  E-value=7.9e-17  Score=125.99  Aligned_cols=163  Identities=12%  Similarity=0.040  Sum_probs=107.7

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcC-------CC-------CCccccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTG-------EF-------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (199)
                      .....+.++|+++|..++|||||+++|+..       .+       ........|.+.......+......+.++||||+
T Consensus         6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh   85 (396)
T PRK12735          6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH   85 (396)
T ss_pred             cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence            455688899999999999999999998751       10       0011124555555555555556678899999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEE-EEEeCCCCCCccccH-----HHHHHHHHcC
Q 029077           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKA-----KQVTFHRKKN  146 (199)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~i-iv~~K~D~~~~~~~~-----~~~~~~~~~~  146 (199)
                      ..|.......+..+|++++|+|+.+...-+. ...+..+..  .++|.+ +++||+|+.+.....     +...+....+
T Consensus        86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         86 ADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            8877666677789999999999987532221 122222222  367855 579999996422111     2223344332


Q ss_pred             -----CcEEEeccCCCC----------ChHHHHHHHHHHHh
Q 029077          147 -----LQYYEISAKSNY----------NFEKPFLYLARKLA  172 (199)
Q Consensus       147 -----~~~~~~s~~~~~----------~v~~~~~~i~~~~~  172 (199)
                           ++++++|+.+|.          ++.++++.|.+.+.
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence                 678999999984          56677777766543

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.74  E-value=6.9e-17  Score=115.10  Aligned_cols=160  Identities=17%  Similarity=0.204  Sum_probs=96.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeE---EEeeEEEEecCcEEEEEEEeCCCcccccccccc-----ccc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG-----YYI   84 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~-----~~~   84 (199)
                      ++||+++|.+|+|||||+|.+.+.........+.+.   +.....+. ......+.+||++|..........     .+.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYP-HPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeee-cCCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            479999999999999999998764443322222221   11111111 111246899999997543222222     256


Q ss_pred             CCcEEEEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCC--cc-----------ccHHHHH----HHHHc-
Q 029077           85 HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--RQ-----------VKAKQVT----FHRKK-  145 (199)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~--~~-----------~~~~~~~----~~~~~-  145 (199)
                      .+|+++++.+.    .+... ..|+..+...  +.|+++|+||+|+..  ..           ..++..+    ..... 
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            78988887432    22222 2455555554  689999999999842  11           0011111    12221 


Q ss_pred             --CCcEEEeccC--CCCChHHHHHHHHHHHhCCCCCce
Q 029077          146 --NLQYYEISAK--SNYNFEKPFLYLARKLAGDPNLHF  179 (199)
Q Consensus       146 --~~~~~~~s~~--~~~~v~~~~~~i~~~~~~~~~~~~  179 (199)
                        .-++|.+|+.  .+.++..+.+.|...+.+..+..+
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~~~  191 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRHVF  191 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHHHH
Confidence              2358899998  679999999999999987655443

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.74  E-value=3.9e-17  Score=119.16  Aligned_cols=116  Identities=20%  Similarity=0.183  Sum_probs=83.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--------C-----c---cccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFE--------K-----K---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~--------~-----~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (199)
                      +|+++|..|+|||||+++|+...-.        .     .   .....|.+.......+...+..+.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999998752110        0     0   0122334444444455556789999999999988888


Q ss_pred             ccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (199)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~  133 (199)
                      ...+++.+|++++|+|+++....+ ...+...+..  .++|+++++||+|+....
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~--~~~P~iivvNK~D~~~a~  132 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK--LNIPTIIFVNKIDRAGAD  132 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH--cCCCEEEEEECccccCCC
Confidence            888899999999999999864332 2334443433  378999999999998643

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.74  E-value=9.8e-17  Score=116.06  Aligned_cols=151  Identities=14%  Similarity=0.187  Sum_probs=93.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccc------------eeE-----------EEeeE--E-----------EEec
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT------------IGV-----------EVHPL--D-----------FFTN   58 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~------------~~~-----------~~~~~--~-----------~~~~   58 (199)
                      ||+++|+.++|||||+++|..+.+.......            .|.           +....  .           ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999998865553211000            111           10000  0           0111


Q ss_pred             CcEEEEEEEeCCCcccccccccccc--cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH
Q 029077           59 CGKIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA  136 (199)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~  136 (199)
                      .....+.+.|+||++.+.......+  ..+|++++|+|++.+..-. ...++..+...  ++|+++|.||+|+.+.....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~  157 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL--NIPVFVVVTKIDLAPANILQ  157 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEECccccCHHHHH
Confidence            2346789999999988755444333  3689999999988654322 12233333332  78999999999986533222


Q ss_pred             HHH----HHHH--------------------------HcCCcEEEeccCCCCChHHHHHHHH
Q 029077          137 KQV----TFHR--------------------------KKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus       137 ~~~----~~~~--------------------------~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      +..    ...+                          ....+++.+|+.+|.|+++++..|.
T Consensus       158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            211    1221                          1124799999999999999887664

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04169 RF3 RF3 subfamily

Probab=99.73  E-value=1.2e-16  Score=118.50  Aligned_cols=118  Identities=19%  Similarity=0.218  Sum_probs=81.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC--CCCC---------------cc---ccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTG--EFEK---------------KY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~--~~~~---------------~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (199)
                      -+|+++|+.|+|||||+++|+..  ....               .+   ....|.+.......+...++.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            47999999999999999998742  1110               00   0012333444444556678899999999998


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc
Q 029077           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (199)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~  134 (199)
                      .|.......++.+|++++|+|+++..... ...+......  .++|+++++||+|+.....
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~a~~  140 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREGRDP  140 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCCCCH
Confidence            88776677789999999999998753222 1222222222  3789999999999876543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.73  E-value=2.1e-16  Score=128.46  Aligned_cols=154  Identities=23%  Similarity=0.267  Sum_probs=99.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCC----CccccceeEEEeeEEEEe--cCcE-----E-----EEEEEeCCCcc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYEPTIGVEVHPLDFFT--NCGK-----I-----RFYCWDTAGQE   73 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~-----~-----~~~l~D~~g~~   73 (199)
                      ..+...|+++|+.++|||||+++|......    .....+.|.+........  .+..     .     .+.+|||||++
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            345568999999999999999997643321    112234443332221100  0111     1     26899999999


Q ss_pred             cccccccccccCCcEEEEEEeCCC---hhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----------------
Q 029077           74 KFGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----------------  134 (199)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----------------  134 (199)
                      .|...+...+..+|++++|+|+++   +.++..+.    .+..  .++|+++++||+|+.....                
T Consensus        83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            998888878889999999999997   34443332    1222  3789999999999852100                


Q ss_pred             -cHH--------HHHHHHH---------------cCCcEEEeccCCCCChHHHHHHHHH
Q 029077          135 -KAK--------QVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus       135 -~~~--------~~~~~~~---------------~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                       ..+        .......               ...+++++||++|.|+.+++..+..
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence             000        0011111               1356899999999999998888764

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.71  E-value=3.8e-16  Score=114.38  Aligned_cols=153  Identities=14%  Similarity=0.124  Sum_probs=104.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEE-EEEEEeCCCcccccccc-------cccccCC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-RFYCWDTAGQEKFGGLR-------DGYYIHG   86 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~D~~g~~~~~~~~-------~~~~~~~   86 (199)
                      .|.++|-|++|||||++.+.....  ..-+...+|..+....+...+. .+.+-|+||.-......       ...+..+
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            688999999999999998664332  2223333444444444433333 48999999965433222       2236789


Q ss_pred             cEEEEEEeCCCh---hhHhcHHHHHHHHHhh---cCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCc-EEEeccCCCCC
Q 029077           87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYN  159 (199)
Q Consensus        87 d~~i~v~d~~~~---~s~~~~~~~~~~l~~~---~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~  159 (199)
                      +.+++|+|++..   ..++.+.....++..+   ..++|.++|.||+|+.+.+... ..++++...-+ ++++||+++++
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~~L~~~lq~~~V~pvsA~~~eg  354 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LSSLAKRLQNPHVVPVSAKSGEG  354 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH-HHHHHHHcCCCcEEEeeeccccc
Confidence            999999999987   6666666665555544   3579999999999997433222 23455555544 99999999999


Q ss_pred             hHHHHHHHHHH
Q 029077          160 FEKPFLYLARK  170 (199)
Q Consensus       160 v~~~~~~i~~~  170 (199)
                      +.++.+.|.+.
T Consensus       355 l~~ll~~lr~~  365 (366)
T KOG1489|consen  355 LEELLNGLREL  365 (366)
T ss_pred             hHHHHHHHhhc
Confidence            99998877653

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.69  E-value=6.1e-16  Score=122.28  Aligned_cols=151  Identities=17%  Similarity=0.247  Sum_probs=103.4

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------ccccceeEEEeeEEEEecC
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTNC   59 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~   59 (199)
                      .+.++++|+++|+.++|||||+.+|+...  ...                           ......|.+.......+..
T Consensus         3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~   82 (447)
T PLN00043          3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET   82 (447)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence            35778999999999999999999877311  000                           1112234455554555666


Q ss_pred             cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHh-------cHHHHHHHHHhhcCCC-cEEEEEeCCCCCC
Q 029077           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK-------NVPTWHRDLCRVCENI-PIVLCGNKVDVKN  131 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~l~~~~~~~-p~iiv~~K~D~~~  131 (199)
                      ....+.++|+||+++|.......+..+|++|+|+|+++. .|+       ....... +... .++ ++++++||+|+.+
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~-~~~~-~gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHAL-LAFT-LGVKQMICCCNKMDATT  159 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHH-HHHH-cCCCcEEEEEEcccCCc
Confidence            788999999999999988888889999999999999874 222       1111111 1111 256 4788899999863


Q ss_pred             cc--------ccHHHHHHHHHcC-----CcEEEeccCCCCChHH
Q 029077          132 RQ--------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK  162 (199)
Q Consensus       132 ~~--------~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~  162 (199)
                      ..        ...+...+++..+     ++++++|+.+|.|+.+
T Consensus       160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            11        1223345566555     5699999999999853

>CHL00071 tufA elongation factor Tu

Probab=99.69  E-value=8.3e-16  Score=120.78  Aligned_cols=150  Identities=14%  Similarity=0.048  Sum_probs=99.6

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCC--------------CccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (199)
                      ..+.+.++|+++|..++|||||+++|+...-.              .......|.+.......+......+.+.|+||+.
T Consensus         7 ~~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          7 ERKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             cCCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence            34678899999999999999999998753110              0111225556555555555566788999999988


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCcccc-----HHHHHHHHHcC-
Q 029077           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKKN-  146 (199)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~-----~~~~~~~~~~~-  146 (199)
                      .+.......+..+|++++|+|+.....-+. ...+..+..  .++| +|+++||+|+.+....     .+...+.+..+ 
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~  163 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDF  163 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            876666667789999999999986532221 122222222  2678 6788999999753221     12223333333 


Q ss_pred             ----CcEEEeccCCCCCh
Q 029077          147 ----LQYYEISAKSNYNF  160 (199)
Q Consensus       147 ----~~~~~~s~~~~~~v  160 (199)
                          .+++.+|+.+|.++
T Consensus       164 ~~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        164 PGDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCCcceEEEcchhhcccc
Confidence                67999999988643

>COG2262 HflX GTPases [General function prediction only]

Probab=99.69  E-value=2.6e-15  Score=113.84  Aligned_cols=172  Identities=16%  Similarity=0.137  Sum_probs=115.5

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--cccccccc--
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGY--   82 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~--   82 (199)
                      .......|+++|..++|||||+|+|......  .....|...+......  . ....+.+.||.|--.  -..+..+|  
T Consensus       188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l--~-~g~~vlLtDTVGFI~~LP~~LV~AFks  264 (411)
T COG2262         188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIEL--G-DGRKVLLTDTVGFIRDLPHPLVEAFKS  264 (411)
T ss_pred             cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEe--C-CCceEEEecCccCcccCChHHHHHHHH
Confidence            3456678999999999999999997743322  2333444333333332  2 256788899998422  11222222  


Q ss_pred             ----ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhh-cCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCC
Q 029077           83 ----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN  157 (199)
Q Consensus        83 ----~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                          ...+|.++.|+|++++.....+.....-+.+. ..+.|+|+|.||+|+........   ......-..+.+||++|
T Consensus       265 TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~---~~~~~~~~~v~iSA~~~  341 (411)
T COG2262         265 TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILA---ELERGSPNPVFISAKTG  341 (411)
T ss_pred             HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhh---hhhhcCCCeEEEEeccC
Confidence                45799999999999997666666666666554 35799999999999765443111   11111115899999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCceecCCCCC
Q 029077          158 YNFEKPFLYLARKLAGDPNLHFVESPALA  186 (199)
Q Consensus       158 ~~v~~~~~~i~~~~~~~~~~~~~~~p~~~  186 (199)
                      .|++.++..|...+........+.-|...
T Consensus       342 ~gl~~L~~~i~~~l~~~~~~~~l~lp~~~  370 (411)
T COG2262         342 EGLDLLRERIIELLSGLRTEVTLELPYTD  370 (411)
T ss_pred             cCHHHHHHHHHHHhhhcccceEEEcCccc
Confidence            99999999999999866665555555533

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.69  E-value=2.9e-15  Score=103.77  Aligned_cols=160  Identities=14%  Similarity=0.097  Sum_probs=105.7

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCc----------ccccc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGG   77 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~   77 (199)
                      -++....-|+++|.++||||||+|.|.+..--.....|.|.|...-.+.+++.   +.+.|.||-          +.+..
T Consensus        19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHH
Confidence            34456678999999999999999998875544455567776665555554443   788999993          23334


Q ss_pred             ccccccc---CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HHHHHc----CCc-
Q 029077           78 LRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK----NLQ-  148 (199)
Q Consensus        78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~~~~~----~~~-  148 (199)
                      ....|+.   +-.++++++|+.....-.+. +.+..+...  ++|++++.||+|.-......... ..++..    ... 
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~  172 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQ  172 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccc
Confidence            4444543   35678888898765433221 223333332  89999999999987644333222 222222    222 


Q ss_pred             -EEEeccCCCCChHHHHHHHHHHHhC
Q 029077          149 -YYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       149 -~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                       ++..|+.++.|++++...|.+.+..
T Consensus       173 ~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         173 WVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             eEEEEecccccCHHHHHHHHHHHhhc
Confidence             7788999999999999999887653

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=7.6e-16  Score=119.95  Aligned_cols=170  Identities=16%  Similarity=0.221  Sum_probs=126.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc--CCCC-----------CccccceeEEEeeEEEEe---cCcEEEEEEEeCCCccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFE-----------KKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~--~~~~-----------~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~   74 (199)
                      .+.-++.|+-.-.-|||||..+|+.  +...           -...+..|++.......+   +++.+.++++||||+..
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            3445899999999999999999873  2111           123355677766554433   35669999999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH---HHHHHHHHcCCcEEE
Q 029077           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYE  151 (199)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~---~~~~~~~~~~~~~~~  151 (199)
                      |.......+.-|+++++|+|+..+---+....++..+.   .+..+|.|.||+|++......   +..++......+.+.
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe---~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~  214 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE---AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIY  214 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH---cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEE
Confidence            99999888999999999999998765555555544443   378899999999998755443   333444455567999


Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCC
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL  185 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~  185 (199)
                      +||++|.|+++++.+|++.+......  .|.|..
T Consensus       215 vSAK~G~~v~~lL~AII~rVPpP~~~--~d~plr  246 (650)
T KOG0462|consen  215 VSAKTGLNVEELLEAIIRRVPPPKGI--RDAPLR  246 (650)
T ss_pred             EEeccCccHHHHHHHHHhhCCCCCCC--CCcchH
Confidence            99999999999999999998754433  455543

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.69  E-value=5.8e-16  Score=115.43  Aligned_cols=150  Identities=15%  Similarity=0.182  Sum_probs=92.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--C--ccc------------cceeEEEeeEEEEecCcEEEEEEEeCCCccccccc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFE--K--KYE------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~--~--~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (199)
                      +|+++|++|||||||+++++.....  .  ...            ...+.+.......+...++.+.+|||||...+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            5899999999999999997642211  0  000            00122222222333445678999999998877667


Q ss_pred             ccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEE--EeccCC
Q 029077           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY--EISAKS  156 (199)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~--~~s~~~  156 (199)
                      ...++..+|++++|+|+++.........|. .+..  .++|.++++||+|............+....+..++  .+...+
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~--~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~  157 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE--AGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE  157 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence            777889999999999998765443333332 2222  37899999999999865333222334444454433  334555


Q ss_pred             CCChHHHHHHH
Q 029077          157 NYNFEKPFLYL  167 (199)
Q Consensus       157 ~~~v~~~~~~i  167 (199)
                      |.++..+.+.+
T Consensus       158 ~~~~~~~vd~~  168 (268)
T cd04170         158 GDDFKGVVDLL  168 (268)
T ss_pred             CCceeEEEEcc
Confidence            55554443333

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01850 CDC_Septin CDC/Septin

Probab=99.68  E-value=1.1e-15  Score=113.85  Aligned_cols=141  Identities=17%  Similarity=0.278  Sum_probs=89.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCc----------cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc----
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----   77 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----   77 (199)
                      -.++|+++|.+|+|||||+|+|+.......          ..+|.+..........++..+.+.+|||||......    
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999887665332          234444455555555566678999999999433211    


Q ss_pred             ----------------------ccccccc--CCcEEEEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077           78 ----------------------LRDGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (199)
Q Consensus        78 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~  132 (199)
                                            .+...+.  .+++++++++.+.. ..... ...+..+   ..++|+++|+||+|+...
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l---~~~v~vi~VinK~D~l~~  158 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRL---SKRVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHH---hccCCEEEEEECCCcCCH
Confidence                                  1112233  46777777776542 11111 2223333   337899999999998542


Q ss_pred             c----ccHHHHHHHHHcCCcEEEeccCC
Q 029077          133 Q----VKAKQVTFHRKKNLQYYEISAKS  156 (199)
Q Consensus       133 ~----~~~~~~~~~~~~~~~~~~~s~~~  156 (199)
                      .    ......+.+...++.+|......
T Consensus       159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            1    12233466777888888776543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.68  E-value=5.5e-16  Score=121.59  Aligned_cols=147  Identities=17%  Similarity=0.219  Sum_probs=95.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC--CCC-----------------------------ccccceeEEEeeEEEEecCcEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGE--FEK-----------------------------KYEPTIGVEVHPLDFFTNCGKI   62 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   62 (199)
                      +||+++|+.++|||||+.+|+...  ...                             ......|.+.......+...+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            589999999999999999986321  100                             0011223334444444455667


Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--cH----
Q 029077           63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA----  136 (199)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--~~----  136 (199)
                      .+.++|+||++.|.......+..+|++++|+|+..+..-+....+.  +.......++++++||+|+.+...  ..    
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~  158 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLLGIRHVVLAVNKMDLVDYDEEVFENIKK  158 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence            8999999999988766666788999999999998764333222222  222223446888999999864221  11    


Q ss_pred             HHHHHHHHcC---CcEEEeccCCCCChHH
Q 029077          137 KQVTFHRKKN---LQYYEISAKSNYNFEK  162 (199)
Q Consensus       137 ~~~~~~~~~~---~~~~~~s~~~~~~v~~  162 (199)
                      +...+.+..+   ++++++||.+|.|+.+
T Consensus       159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            1112333333   4699999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.68  E-value=6.5e-16  Score=114.69  Aligned_cols=115  Identities=24%  Similarity=0.234  Sum_probs=81.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc--CCCCC--------------ccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (199)
                      +|+++|..|+|||||+++|+.  +....              ......|.+.......+...+..+.++||||+..+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999863  21100              01123455555555555556788999999999888777


Q ss_pred             ccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (199)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~  132 (199)
                      ....++.+|++++|+|+.+...-+. ......+..  .++|+++++||+|+.+.
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~--~~~p~ivviNK~D~~~a  131 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR--YNVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence            8888999999999999987532222 122222322  37899999999998753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.68  E-value=4.6e-15  Score=105.69  Aligned_cols=166  Identities=11%  Similarity=-0.000  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc----c-------ccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----R-------DGY   82 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----~-------~~~   82 (199)
                      ++|+++|.+|||||||+|.+++...........+.+..............+.++||||.......    .       ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            48999999999999999998765432111111222222222222224568999999996543210    0       112


Q ss_pred             ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcC---CCcEEEEEeCCCCCCcc--------ccHHHHHHHHHcCCcEEE
Q 029077           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQ--------VKAKQVTFHRKKNLQYYE  151 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~p~iiv~~K~D~~~~~--------~~~~~~~~~~~~~~~~~~  151 (199)
                      ....+++++|+++.+. +- .-...+..+...+.   -.++++++|+.|.....        .......+.+..+-.++.
T Consensus        81 ~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            3578999999998762 21 11223333333322   36788999999865422        112233445555555544


Q ss_pred             ec-----cCCCCChHHHHHHHHHHHhCCCCCceec
Q 029077          152 IS-----AKSNYNFEKPFLYLARKLAGDPNLHFVE  181 (199)
Q Consensus       152 ~s-----~~~~~~v~~~~~~i~~~~~~~~~~~~~~  181 (199)
                      .+     +..+.+++++++.|.+.+.++....+.+
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~  193 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESMVKENGGKPYTN  193 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            44     4567889999999999999866555544

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.68  E-value=5.6e-16  Score=123.40  Aligned_cols=152  Identities=17%  Similarity=0.191  Sum_probs=97.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCC--CC--------------c---------------cccceeEEEeeEEEEec
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK--------------K---------------YEPTIGVEVHPLDFFTN   58 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~--~~--------------~---------------~~~~~~~~~~~~~~~~~   58 (199)
                      ....++|+++|..++|||||+.+|+...-  ..              .               .....|.+.......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            46789999999999999999999874321  10              0               00112333333334445


Q ss_pred             CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--cH
Q 029077           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA  136 (199)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--~~  136 (199)
                      .....+.++||||++.|.......+..+|++++|+|+.++..-+....+  .+.......|+++++||+|+.+...  ..
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg~~~iIvvvNKiD~~~~~~~~~~  181 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLGIKHLVVAVNKMDLVDYSEEVFE  181 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhCCCceEEEEEeeccccchhHHHH
Confidence            5667899999999988766555567899999999999875432222221  1222222357889999999864211  11


Q ss_pred             HH----HHHHHHc----CCcEEEeccCCCCChHHH
Q 029077          137 KQ----VTFHRKK----NLQYYEISAKSNYNFEKP  163 (199)
Q Consensus       137 ~~----~~~~~~~----~~~~~~~s~~~~~~v~~~  163 (199)
                      +.    ..+....    ..+++++|+++|.|+.++
T Consensus       182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            11    1223332    367999999999999764

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.67  E-value=1.9e-15  Score=111.43  Aligned_cols=165  Identities=15%  Similarity=0.129  Sum_probs=110.7

Q ss_pred             CCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-c----cc--
Q 029077            5 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-F----GG--   77 (199)
Q Consensus         5 ~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~----~~--   77 (199)
                      .-+..++....|+|.|.||||||||++.+.....  +..+...++..-....++.+...++++||||.-. -    +.  
T Consensus       160 ~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE  237 (346)
T COG1084         160 KLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIE  237 (346)
T ss_pred             cCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHH
Confidence            3455667888999999999999999999654332  3333333344444445566778999999999421 1    11  


Q ss_pred             --cccccccCCcEEEEEEeCCChh--hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HHHHHcCCcEEEe
Q 029077           78 --LRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEI  152 (199)
Q Consensus        78 --~~~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~~~~~~~~~~~~  152 (199)
                        ...+.-.-.++++|++|.+...  +.+.-..++.++..... .|+++|.||.|..+.....+.. .+....+.....+
T Consensus       238 ~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~  316 (346)
T COG1084         238 RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKI  316 (346)
T ss_pred             HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccce
Confidence              1122234578999999998654  34555566777766655 8999999999998655544443 3344444447788


Q ss_pred             ccCCCCChHHHHHHHHHHHh
Q 029077          153 SAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~  172 (199)
                      ++..+.+++.+...+.....
T Consensus       317 ~~~~~~~~d~~~~~v~~~a~  336 (346)
T COG1084         317 SATKGCGLDKLREEVRKTAL  336 (346)
T ss_pred             eeeehhhHHHHHHHHHHHhh
Confidence            88888888887777766543

>PLN03126 Elongation factor Tu; Provisional

Probab=99.67  E-value=1.2e-15  Score=121.22  Aligned_cols=149  Identities=13%  Similarity=0.047  Sum_probs=100.2

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCC------CCC--------ccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE------FEK--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (199)
                      ...++.++|+++|..++|||||+++|+...      ...        ......|.+.......+...+..+.++|+||+.
T Consensus        76 ~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~  155 (478)
T PLN03126         76 ERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA  155 (478)
T ss_pred             hccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence            346788999999999999999999988411      111        112335555555454555566788999999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccccH-----HHHHHHHHc--
Q 029077           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRKK--  145 (199)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~~-----~~~~~~~~~--  145 (199)
                      .|.......+..+|++++|+|+.+...-+. ..++..+..  .++| +++++||+|+.+.....     +...+.+..  
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            887777777789999999999987643322 222222222  2677 77889999997522111     222333332  


Q ss_pred             ---CCcEEEeccCCCCC
Q 029077          146 ---NLQYYEISAKSNYN  159 (199)
Q Consensus       146 ---~~~~~~~s~~~~~~  159 (199)
                         .++++.+|+.+|.+
T Consensus       233 ~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        233 PGDDIPIISGSALLALE  249 (478)
T ss_pred             CcCcceEEEEEcccccc
Confidence               46799999988853

>PRK00049 elongation factor Tu; Reviewed

Probab=99.67  E-value=3.1e-15  Score=117.01  Aligned_cols=163  Identities=12%  Similarity=0.033  Sum_probs=106.2

Q ss_pred             CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCC--------------CccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (199)
Q Consensus         6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (199)
                      ......+.++|+++|..++|||||+++|+.....              .......|.+.......+...+..+.+.||||
T Consensus         5 ~~~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG   84 (396)
T PRK00049          5 KFERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPG   84 (396)
T ss_pred             hccCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCC
Confidence            3455688899999999999999999998752110              01112455665555555655667889999999


Q ss_pred             cccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEE-EEEeCCCCCCccccH-----HHHHHHHHc
Q 029077           72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKA-----KQVTFHRKK  145 (199)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~i-iv~~K~D~~~~~~~~-----~~~~~~~~~  145 (199)
                      +..|.......+..+|++++|+|+.++..-+ ....+..+..  .++|.+ +++||+|+.+.....     +...+....
T Consensus        85 ~~~f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~  161 (396)
T PRK00049         85 HADYVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY  161 (396)
T ss_pred             HHHHHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence            9887666666778999999999998753222 1222233332  267876 578999997422111     122333332


Q ss_pred             -----CCcEEEeccCCCC----------ChHHHHHHHHHHH
Q 029077          146 -----NLQYYEISAKSNY----------NFEKPFLYLARKL  171 (199)
Q Consensus       146 -----~~~~~~~s~~~~~----------~v~~~~~~i~~~~  171 (199)
                           .++++.+|+++|.          ++..+++.|.+.+
T Consensus       162 ~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        162 DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence                 3678999999875          3455555555543

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.66  E-value=6.5e-16  Score=111.36  Aligned_cols=113  Identities=18%  Similarity=0.235  Sum_probs=78.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC--CCc------------cccceeEEEee--EEEEec--------CcEEEEEEEeCC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEF--EKK------------YEPTIGVEVHP--LDFFTN--------CGKIRFYCWDTA   70 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~--~~~------------~~~~~~~~~~~--~~~~~~--------~~~~~~~l~D~~   70 (199)
                      +|+++|..++|||||+.+|+...-  ...            .....|.+...  ....+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            699999999999999999874321  100            00112222111  112222        347899999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (199)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~  130 (199)
                      |+..|......+++.+|++++|+|++++...+....+.. ...  .++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH--cCCCEEEEEECCCcc
Confidence            999999888999999999999999998765543222222 222  368999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=3.8e-16  Score=103.83  Aligned_cols=155  Identities=18%  Similarity=0.284  Sum_probs=114.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.-|++++|-.|+|||||++.|...+. ....||...+.....+    .++.++-+|.+|+..-+..+..++..+++++
T Consensus        18 kK~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv   92 (193)
T KOG0077|consen   18 KKFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIV   92 (193)
T ss_pred             ccCceEEEEeecCCchhhHHHHHccccc-cccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence            3556999999999999999997554433 3445555544444444    6789999999999888889999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHH------HHHHHcC-----------CcEEE
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKN-----------LQYYE  151 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~------~~~~~~~-----------~~~~~  151 (199)
                      +.+|+-|.+.|++...-+..+....  .+.|+++.+||+|.+.....++..      ..+...+           ...+.
T Consensus        93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm  172 (193)
T KOG0077|consen   93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM  172 (193)
T ss_pred             eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence            9999999999998887666554432  689999999999998755333221      2222111           23677


Q ss_pred             eccCCCCChHHHHHHHHHH
Q 029077          152 ISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~  170 (199)
                      ||...+.+--+.|.|+...
T Consensus       173 csi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  173 CSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEEccCccceeeeehhhh
Confidence            8888888877777776543

>PRK13351 elongation factor G; Reviewed

Probab=99.66  E-value=2.5e-15  Score=125.23  Aligned_cols=118  Identities=21%  Similarity=0.242  Sum_probs=83.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCC--------C-----Cccc---cceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--------E-----KKYE---PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~--------~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (199)
                      .+..+|+|+|..|+|||||+++|+...-        .     ..+.   ...+.+.......+......+.+|||||+..
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            3567999999999999999999874211        0     0000   0123233322233344578999999999988


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                      +......+++.+|++++|+|+++....+....|. .+..  .++|+++++||+|+..
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~--~~~p~iiviNK~D~~~  139 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR--YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh--cCCCEEEEEECCCCCC
Confidence            8888888899999999999999876555444442 2322  3789999999999764

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=2.7e-15  Score=113.75  Aligned_cols=154  Identities=21%  Similarity=0.262  Sum_probs=109.3

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhc--CCCC---------------------------CccccceeEEEeeEEEEecC
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLT--GEFE---------------------------KKYEPTIGVEVHPLDFFTNC   59 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   59 (199)
                      ..+++++++++|+..+|||||+-+|+.  +..+                           ....+..|.+.......++.
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            457889999999999999999998774  1111                           11123456666666667777


Q ss_pred             cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh---H--hcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-cc
Q 029077           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y--KNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQ  133 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~--~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~  133 (199)
                      ..+.+++.|+||+..|...+..-+.++|+.|+|+|+.+.+.   |  ....+-+..+.....-..+|+++||+|+.+ .+
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde  162 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence            78899999999999999999889999999999999998742   1  122233334444444566788889999976 11


Q ss_pred             -----ccHHHHHHHHHcC-----CcEEEeccCCCCChHH
Q 029077          134 -----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEK  162 (199)
Q Consensus       134 -----~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~  162 (199)
                           +..+...+.+..|     ++|+++|+..|.|+.+
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence                 1122223443433     5699999999999865

>PLN03127 Elongation factor Tu; Provisional

Probab=99.65  E-value=8.1e-15  Score=115.86  Aligned_cols=163  Identities=15%  Similarity=0.057  Sum_probs=104.1

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcC-----CC-C--------CccccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTG-----EF-E--------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~-----~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (199)
                      +....++++|+++|..++|||||+++|...     .. .        .......|.+.......+...+..+.++||||+
T Consensus        55 ~~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh  134 (447)
T PLN03127         55 FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGH  134 (447)
T ss_pred             hhcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCc
Confidence            345678899999999999999999997521     10 0        011123556666656666666778999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccccHH-----HHHHHHHc-
Q 029077           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAK-----QVTFHRKK-  145 (199)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~~~-----~~~~~~~~-  145 (199)
                      ..|.......+..+|++++|+|+++...-+. ...+..+..  .++| ++++.||+|+.+.....+     ..++.... 
T Consensus       135 ~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~  211 (447)
T PLN03127        135 ADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK  211 (447)
T ss_pred             cchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence            8876666666678999999999987532221 222222222  2678 467899999975222111     11222221 


Q ss_pred             ----CCcEEEeccC---CCCC-------hHHHHHHHHHHHh
Q 029077          146 ----NLQYYEISAK---SNYN-------FEKPFLYLARKLA  172 (199)
Q Consensus       146 ----~~~~~~~s~~---~~~~-------v~~~~~~i~~~~~  172 (199)
                          .++++.+|+.   +|.|       +.++++.+.+.+.
T Consensus       212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence                3568888876   4444       5677777766554

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.65  E-value=8.7e-15  Score=110.71  Aligned_cols=166  Identities=17%  Similarity=0.274  Sum_probs=103.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC------CccccceeEEEeeEEEE---------------ecC-cEEEEEEEeCCCc-
Q 029077           16 LVIVGDGGTGKTTFVKRHLTGEFE------KKYEPTIGVEVHPLDFF---------------TNC-GKIRFYCWDTAGQ-   72 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~~~~~------~~~~~~~~~~~~~~~~~---------------~~~-~~~~~~l~D~~g~-   72 (199)
                      |+++|.++||||||+|+|......      ....|+.|.........               .++ ..+.+++||++|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            589999999999999998865532      12234444333211000               122 3478999999997 


Q ss_pred             ---ccccccccc---cccCCcEEEEEEeCCC---------------h-hhHh----cHHHH-HH----------------
Q 029077           73 ---EKFGGLRDG---YYIHGQCAIIMFDVTA---------------R-LTYK----NVPTW-HR----------------  109 (199)
Q Consensus        73 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~s~~----~~~~~-~~----------------  109 (199)
                         +.+..+...   .++++|++++|+|+..               + +.++    ++..| ..                
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               334333333   4899999999999973               1 0111    11111 00                


Q ss_pred             ----------HHH--------------h----------------------hcCCCcEEEEEeCCCCCCccccHHHHHHHH
Q 029077          110 ----------DLC--------------R----------------------VCENIPIVLCGNKVDVKNRQVKAKQVTFHR  143 (199)
Q Consensus       110 ----------~l~--------------~----------------------~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~  143 (199)
                                .+.              .                      ....+|+|+++||.|+.+.....+... ..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~-~~  239 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLR-LK  239 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHH-hh
Confidence                      000              0                      012469999999999754322222111 22


Q ss_pred             HcCCcEEEeccCCCCChHHHHH-HHHHHHhCCCCCceecC
Q 029077          144 KKNLQYYEISAKSNYNFEKPFL-YLARKLAGDPNLHFVES  182 (199)
Q Consensus       144 ~~~~~~~~~s~~~~~~v~~~~~-~i~~~~~~~~~~~~~~~  182 (199)
                      .....++.+||+.+.++.++.+ .+.+.+.+.+.+....+
T Consensus       240 ~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~~  279 (318)
T cd01899         240 YPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITDE  279 (318)
T ss_pred             CCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceeccc
Confidence            2345799999999999999998 69999998887766654

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.64  E-value=4.6e-15  Score=122.51  Aligned_cols=152  Identities=20%  Similarity=0.201  Sum_probs=96.6

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCC--CCc-----------c------------------ccceeEEEeeEEEEe
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK-----------Y------------------EPTIGVEVHPLDFFT   57 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~--~~~-----------~------------------~~~~~~~~~~~~~~~   57 (199)
                      ...+.++|+++|.+++|||||+++|+...-  ...           .                  ....|.+.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            346678999999999999999999874221  100           0                  001233333333344


Q ss_pred             cCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC--cccc
Q 029077           58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--RQVK  135 (199)
Q Consensus        58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~--~~~~  135 (199)
                      ...+..+.++||||++.+.......+..+|++++|+|++++..-+....+.  +.......++++++||+|+.+  ....
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~--~~~~~~~~~iivvvNK~D~~~~~~~~~  177 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF--IASLLGIRHVVLAVNKMDLVDYDQEVF  177 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH--HHHHhCCCeEEEEEEecccccchhHHH
Confidence            455668889999999887665556678999999999998654322222211  122223467889999999864  1111


Q ss_pred             H----HHHHHHHHcC---CcEEEeccCCCCChHH
Q 029077          136 A----KQVTFHRKKN---LQYYEISAKSNYNFEK  162 (199)
Q Consensus       136 ~----~~~~~~~~~~---~~~~~~s~~~~~~v~~  162 (199)
                      .    +...+.+..+   .+++++||++|.|+.+
T Consensus       178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            1    1123334444   3589999999999874

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.64  E-value=6e-15  Score=116.76  Aligned_cols=151  Identities=20%  Similarity=0.230  Sum_probs=99.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeeEEEEecCc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG   60 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   60 (199)
                      +.+.++|+++|+.++|||||+.+|+.  +....                           ......|.+.......+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            46779999999999999999999874  11110                           01122345544444555667


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh---H---hcHHHHHHHHHhhcCCCc-EEEEEeCCCCCC--
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y---KNVPTWHRDLCRVCENIP-IVLCGNKVDVKN--  131 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~--  131 (199)
                      ...+.++|+||+.+|.......+..+|++++|+|++++.-   +   ....+....+..  .++| +|+++||+|...  
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~~~~  161 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDDKTVN  161 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEccccccch
Confidence            7899999999999988888888899999999999987531   1   111121222222  2655 678999999532  


Q ss_pred             --cc----ccHHHHHHHHHc-----CCcEEEeccCCCCChHH
Q 029077          132 --RQ----VKAKQVTFHRKK-----NLQYYEISAKSNYNFEK  162 (199)
Q Consensus       132 --~~----~~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~  162 (199)
                        ..    ...+...+....     .++++.+|+.+|.|+.+
T Consensus       162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              11    112222333333     35699999999999853

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.63  E-value=4.3e-15  Score=119.44  Aligned_cols=120  Identities=19%  Similarity=0.205  Sum_probs=83.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc--CCCC--C----------------ccccceeEEEeeEEEEecCcEEEEEEEeCC
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFE--K----------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA   70 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~--~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   70 (199)
                      .+..+|+++|+.++|||||.++|+.  +...  +                ......|.+.......+..+.+.+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            4567999999999999999999863  1110  0                001123444444444555667899999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (199)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~  133 (199)
                      |+..|......+++.+|++|+|+|+++..... ...+......  .++|+++++||+|+....
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~--~~iPiiv~iNK~D~~~a~  147 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL--RDTPIFTFINKLDRDGRE  147 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh--cCCCEEEEEECCcccccC
Confidence            99888776777789999999999998753222 2222222222  489999999999987644

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.63  E-value=3.2e-15  Score=97.65  Aligned_cols=107  Identities=21%  Similarity=0.227  Sum_probs=65.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc---------cccccccC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYIH   85 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~~   85 (199)
                      ||+|+|.+|+|||||+|.|+.... .......+.+.......+......+.++||||......         .....+..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~-~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKL-AKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK   79 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTS-SEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred             CEEEECCCCCCHHHHHHHHhcccc-ccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence            699999999999999999885432 11111222222221111122345557999999643211         12223478


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeC
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK  126 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K  126 (199)
                      +|++++|+|..+... +.....+..+.   .+.|+++|.||
T Consensus        80 ~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   80 SDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             ESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred             CCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence            999999999877321 22333444442   58999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.62  E-value=4.9e-15  Score=106.91  Aligned_cols=171  Identities=13%  Similarity=0.227  Sum_probs=112.0

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-------ccccc
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-------FGGLR   79 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~   79 (199)
                      +-.+..+++|+++|..|+|||||+|.|+.+.......-..+.+-.. .....+..-.+.+||+||.+.       ++..+
T Consensus        33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~-~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~  111 (296)
T COG3596          33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITT-RLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLY  111 (296)
T ss_pred             hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchh-hHHhhccccceEEecCCCcccchhhhHHHHHHH
Confidence            4557789999999999999999999988654432221111111110 111122336789999999655       55667


Q ss_pred             cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc---------cccHH-------HH----
Q 029077           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR---------QVKAK-------QV----  139 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~---------~~~~~-------~~----  139 (199)
                      ..++...|.++++.++.|+.- ..-.+++..+....-+.++++++|..|....         .....       ..    
T Consensus       112 ~d~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~  190 (296)
T COG3596         112 RDYLPKLDLVLWLIKADDRAL-GTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG  190 (296)
T ss_pred             HHHhhhccEEEEeccCCCccc-cCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence            778889999999999988642 2222344455555556899999999996432         11111       11    


Q ss_pred             HHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCCCCcee
Q 029077          140 TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV  180 (199)
Q Consensus       140 ~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~  180 (199)
                      +++++ -.+++..+...+.|++++...+++++....+....
T Consensus       191 ~~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a  230 (296)
T COG3596         191 RLFQE-VKPVVAVSGRLPWGLKELVRALITALPVEARSPLA  230 (296)
T ss_pred             HHHhh-cCCeEEeccccCccHHHHHHHHHHhCcccccchhh
Confidence            12222 34678888899999999999999999865554443

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.62  E-value=3.3e-15  Score=103.40  Aligned_cols=117  Identities=16%  Similarity=0.233  Sum_probs=71.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccccc---ccCCcEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY---YIHGQCA   89 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~---~~~~d~~   89 (199)
                      .-.|+++|+.|||||+|+.+|..+.......+..  ....... -......+.++|+||+.+.+......   ..++.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e--~n~~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSME--NNIAYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SS--EEEECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeecccc--CCceEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            4578999999999999999998875544333331  1111111 12234578999999999987755443   7889999


Q ss_pred             EEEEeCCC-hhhHhcHHHHHHHHHhh----cCCCcEEEEEeCCCCCCc
Q 029077           90 IIMFDVTA-RLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNR  132 (199)
Q Consensus        90 i~v~d~~~-~~s~~~~~~~~~~l~~~----~~~~p~iiv~~K~D~~~~  132 (199)
                      |+|+|++. ........+++..+...    ....|++++.||.|+...
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            99999974 34445555444433322    246899999999998653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.62  E-value=2.5e-14  Score=110.04  Aligned_cols=159  Identities=16%  Similarity=0.164  Sum_probs=119.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCC--CC-----------CccccceeEEEeeEEE----Ee-cCcEEEEEEEeCCCcccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGE--FE-----------KKYEPTIGVEVHPLDF----FT-NCGKIRFYCWDTAGQEKF   75 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~--~~-----------~~~~~~~~~~~~~~~~----~~-~~~~~~~~l~D~~g~~~~   75 (199)
                      -+.+++-.-.-|||||..|++...  ..           -......|.+.+.-.+    .. ++.++.+.++||||+-.|
T Consensus        10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF   89 (603)
T COG0481          10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   89 (603)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence            367888999999999999987421  10           1223344555443322    22 457899999999999999


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC---cEEEe
Q 029077           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI  152 (199)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~---~~~~~  152 (199)
                      .......+..|.+.++|+|++.+-.-+.+...+..+.+   +.-++-|.||+|++......-..++..-.|+   ..+.+
T Consensus        90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~  166 (603)
T COG0481          90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLV  166 (603)
T ss_pred             EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeE
Confidence            88888888999999999999988777777777666654   7888999999999986655544444444454   48899


Q ss_pred             ccCCCCChHHHHHHHHHHHhCCC
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~  175 (199)
                      ||++|.|++++++.|.+.+....
T Consensus       167 SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         167 SAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             ecccCCCHHHHHHHHHhhCCCCC
Confidence            99999999999999999886433

>TIGR00503 prfC peptide chain release factor 3

Probab=99.60  E-value=1.1e-14  Score=117.11  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=83.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc--CCCCC------------------ccccceeEEEeeEEEEecCcEEEEEEEeCC
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA   70 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   70 (199)
                      .+..+|+++|..++|||||+++|+.  +....                  ......|.+.......++..++.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4567999999999999999999763  11100                  011123455555555666778999999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (199)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~  132 (199)
                      |+..|.......+..+|++|+|+|+++.... ....+......  .++|+++++||+|+...
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~~PiivviNKiD~~~~  147 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRKLMEVTRL--RDTPIFTFMNKLDRDIR  147 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHHHHHHHHh--cCCCEEEEEECccccCC
Confidence            9988777667778999999999999875211 12223332222  47899999999998653

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=6.7e-15  Score=113.56  Aligned_cols=163  Identities=15%  Similarity=0.145  Sum_probs=112.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-ccccc--------ccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLR--------DGY   82 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~--------~~~   82 (199)
                      .-++|+++|+||+|||||+|.| .+.......|-.|+++..+...++-..+.+.+.||+|..+ .....        ...
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL-~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNAL-SREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHH-hcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            3489999999999999999985 4556677888999999999999988899999999999655 22211        223


Q ss_pred             ccCCcEEEEEEeCCChh--hHhcHHHHHHHHHhhc-------CCCcEEEEEeCCCCCCc--cccHHHHHHHH--Hc-CCc
Q 029077           83 YIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-------ENIPIVLCGNKVDVKNR--QVKAKQVTFHR--KK-NLQ  148 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~-------~~~p~iiv~~K~D~~~~--~~~~~~~~~~~--~~-~~~  148 (199)
                      +..+|++++|+|+....  +-..+...+......+       .+.|++++.||.|+...  ........+..  .. .++
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~  425 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP  425 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence            67899999999994432  2222223333322211       24789999999998764  21111111111  11 133


Q ss_pred             -EEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077          149 -YYEISAKSNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       149 -~~~~s~~~~~~v~~~~~~i~~~~~~~~  175 (199)
                       ..++|+.+++|++++...+.+.+....
T Consensus       426 i~~~vs~~tkeg~~~L~~all~~~~~~~  453 (531)
T KOG1191|consen  426 IVVEVSCTTKEGCERLSTALLNIVERLV  453 (531)
T ss_pred             eEEEeeechhhhHHHHHHHHHHHHHHhh
Confidence             455999999999999999988776443

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.60  E-value=6e-14  Score=103.35  Aligned_cols=155  Identities=17%  Similarity=0.101  Sum_probs=104.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc-------cccccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYY   83 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~   83 (199)
                      .-.-+++++|.|++|||||++.|.+..  .+......++..++...++++...+++.|+||.-..       ........
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence            345689999999999999999966433  222333445666666677788899999999984321       12345568


Q ss_pred             cCCcEEEEEEeCCChhh-HhcHHHHHHHH-----------------------------------------Hhh-------
Q 029077           84 IHGQCAIIMFDVTARLT-YKNVPTWHRDL-----------------------------------------CRV-------  114 (199)
Q Consensus        84 ~~~d~~i~v~d~~~~~s-~~~~~~~~~~l-----------------------------------------~~~-------  114 (199)
                      ++||.+++|+|+..... .+.+...+...                                         .++       
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            99999999999986543 22222211111                                         000       


Q ss_pred             ------------------cCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          115 ------------------CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       115 ------------------~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                                        .-=+|.+.|.||.|+...+.   ...+.+..  .++.+||..+.|++++.+.|.+.+-
T Consensus       219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~---~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEE---LERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             EEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHH---HHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence                              00138899999999987222   12222222  8899999999999999999998874

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.59  E-value=1.9e-14  Score=119.89  Aligned_cols=119  Identities=20%  Similarity=0.200  Sum_probs=84.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc--CCCC--Ccc------------ccceeEEEeeEEEEecCcEEEEEEEeCCCcccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFE--KKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~--~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (199)
                      +.-+|+++|..++|||||+++|+.  +...  ...            ....|++.......+...+..+.+|||||+..+
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            445999999999999999999863  1110  000            012344555444555556789999999999888


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (199)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~  133 (199)
                      .......++.+|++++|+|+++....+....| ..+..  .++|+++++||+|+....
T Consensus        89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~~~  143 (689)
T TIGR00484        89 TVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR--YEVPRIAFVNKMDKTGAN  143 (689)
T ss_pred             hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH--cCCCEEEEEECCCCCCCC
Confidence            77777888999999999999886544433222 22322  378999999999998643

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK12739 elongation factor G; Reviewed

Probab=99.58  E-value=4.1e-14  Score=117.87  Aligned_cols=118  Identities=19%  Similarity=0.130  Sum_probs=81.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC--CCC--Ccc------------ccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFE--KKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~--~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (199)
                      .+..+|+++|..++|||||+++|+..  ...  ...            ....|++.......+...+..+.++||||+..
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            35678999999999999999998632  110  000            01334444444444444678899999999887


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                      +.......+..+|++++|+|+.++...+... ....+..  .++|.++++||+|+..
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~--~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK--YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECCCCCC
Confidence            7777777789999999999998764333222 2222222  3789999999999864

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.57  E-value=6e-14  Score=110.88  Aligned_cols=160  Identities=15%  Similarity=0.164  Sum_probs=101.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCC---CCcccc----ceeEEEeeE----------EE-EecC-------------
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF---EKKYEP----TIGVEVHPL----------DF-FTNC-------------   59 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~---~~~~~~----~~~~~~~~~----------~~-~~~~-------------   59 (199)
                      ...++|+++|.-..|||||+..|..-..   ..+...    ..|......          .+ ....             
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            5678999999999999999999764221   111100    112111100          00 0000             


Q ss_pred             ---cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh-hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc
Q 029077           60 ---GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  135 (199)
Q Consensus        60 ---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~  135 (199)
                         -...+.++|+||++.|.......+..+|++++|+|+.+. ...+....+  .+.....-.++++|.||+|+.+....
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl--~i~~~lgi~~iIVvlNKiDlv~~~~~  189 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL--AAVEIMKLKHIIILQNKIDLVKEAQA  189 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH--HHHHHcCCCcEEEEEecccccCHHHH
Confidence               024689999999998877777778899999999999874 222222222  12222234568899999999753222


Q ss_pred             HHH----HHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          136 AKQ----VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       136 ~~~----~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      .+.    ..+.+.   ...+++++||++|.|++++++.|.+.+.
T Consensus       190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            221    222222   3578999999999999999999887554

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.55  E-value=2.6e-14  Score=90.82  Aligned_cols=136  Identities=19%  Similarity=0.160  Sum_probs=88.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----ccccccccccCCcEEE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDGYYIHGQCAI   90 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~~~~d~~i   90 (199)
                      |++++|..|||||||.+.+.+..  ..+..|..+++...           -.+||||.--    +..........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~--~lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGND--TLYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcch--hhhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            79999999999999999855322  22222332221111           1368888321    1111223357899999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cEEEeccCCCCChHHHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      +|..++++++--.     +.+... ..+|+|-|++|.|+.+.........+..+-|. ++|++|+.+..|+++++..|..
T Consensus        70 ~v~~and~~s~f~-----p~f~~~-~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917          70 YVHAANDPESRFP-----PGFLDI-GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             eeecccCccccCC-----cccccc-cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            9999998865221     111111 25669999999999975544444555555554 5999999999999999987764

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.53  E-value=5.5e-13  Score=103.85  Aligned_cols=64  Identities=17%  Similarity=0.271  Sum_probs=45.5

Q ss_pred             CCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHH-HHHHHHHHHhCCCCCceecC
Q 029077          117 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK-PFLYLARKLAGDPNLHFVES  182 (199)
Q Consensus       117 ~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~-~~~~i~~~~~~~~~~~~~~~  182 (199)
                      .+|+++|+||.|.......  ...+.......++.+||..+.++.+ +.+.+.+.+...+.+...|.
T Consensus       217 ~KPvI~VlNK~D~~~~~~~--l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~  281 (396)
T PRK09602        217 SKPMVIAANKADLPPAEEN--IERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGE  281 (396)
T ss_pred             CCCEEEEEEchhcccchHH--HHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcccc
Confidence            4799999999997532211  1122222345689999999999999 88888898888886654443

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.53  E-value=1.6e-13  Score=101.80  Aligned_cols=158  Identities=16%  Similarity=0.129  Sum_probs=100.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccc----c---ccccccC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGG----L---RDGYYIH   85 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~----~---~~~~~~~   85 (199)
                      -|.++|-|++|||||++.+..... ...|.-   +|..+....+. ...-.|.+-|+||.-+..+    +   ....+..
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpF---TTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPF---TTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCcc---ccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            478999999999999998654322 122211   12222111111 2345688999999543211    1   1223578


Q ss_pred             CcEEEEEEeCCChhh---HhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHH--HHHHHHHcCCcE-EEeccCC
Q 029077           86 GQCAIIMFDVTARLT---YKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQY-YEISAKS  156 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~--~~~~~~~~~~~~-~~~s~~~  156 (199)
                      +.++++|+|++..+.   .+.......++..+.   .++|.++|.||+|+.......+  ...+.+..+... +.+|+.+
T Consensus       238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t  317 (369)
T COG0536         238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT  317 (369)
T ss_pred             hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence            999999999985542   445555566666654   5799999999999654332222  234444444432 2299999


Q ss_pred             CCChHHHHHHHHHHHhCCC
Q 029077          157 NYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       157 ~~~v~~~~~~i~~~~~~~~  175 (199)
                      +.|++++...+.+.+....
T Consensus       318 ~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         318 REGLDELLRALAELLEETK  336 (369)
T ss_pred             ccCHHHHHHHHHHHHHHhh
Confidence            9999999999998887664

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=8.3e-13  Score=103.41  Aligned_cols=154  Identities=16%  Similarity=0.180  Sum_probs=103.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC---cEEEEEEEeCCCcccccccccccccCCcE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---GKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      +..-|+++|+-.-|||||+..+-..+....  ..-|.+-.---+.+..   ....+.++||||++.|-.++.--..-+|.
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI   81 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI   81 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence            445689999999999999998554333211  1222232222222221   34578999999999999888888889999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhh-cCCCcEEEEEeCCCCCCccccHHHHHHHH------HcC--CcEEEeccCCCCC
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKN--LQYYEISAKSNYN  159 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~p~iiv~~K~D~~~~~~~~~~~~~~~------~~~--~~~~~~s~~~~~~  159 (199)
                      +|+|++++|.---+.    ...+.+. ..+.|+++..||+|..+........++.+      .++  ..++++||++|.|
T Consensus        82 aILVVa~dDGv~pQT----iEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G  157 (509)
T COG0532          82 AILVVAADDGVMPQT----IEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG  157 (509)
T ss_pred             EEEEEEccCCcchhH----HHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence            999999998643222    2222222 24999999999999986443332222221      121  4589999999999


Q ss_pred             hHHHHHHHHHHH
Q 029077          160 FEKPFLYLARKL  171 (199)
Q Consensus       160 v~~~~~~i~~~~  171 (199)
                      +.+++..++-..
T Consensus       158 i~eLL~~ill~a  169 (509)
T COG0532         158 IDELLELILLLA  169 (509)
T ss_pred             HHHHHHHHHHHH
Confidence            999988776443

>PRK00007 elongation factor G; Reviewed

Probab=99.51  E-value=2.2e-13  Score=113.58  Aligned_cols=119  Identities=20%  Similarity=0.197  Sum_probs=82.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc--CCCCC--cc------------ccceeEEEeeEEEEecCcEEEEEEEeCCCcccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~--~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (199)
                      +..+|+++|..++|||||+++|+.  +....  ..            ....|.+.......+...+..+.++||||+..+
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f   88 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF   88 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence            456999999999999999999873  21110  01            023445555444445556789999999998877


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (199)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~  133 (199)
                      .......+..+|++++|+|+......+....|. .+..  .++|.++++||+|+....
T Consensus        89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~--~~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK--YKVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH--cCCCEEEEEECCCCCCCC
Confidence            666666788999999999998764444333222 2222  278999999999998644

>PRK12740 elongation factor G; Reviewed

Probab=99.50  E-value=2.7e-13  Score=112.96  Aligned_cols=110  Identities=19%  Similarity=0.240  Sum_probs=74.5

Q ss_pred             EcCCCCCHHHHHHHHhcCCC--CC--c------------cccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccccc
Q 029077           19 VGDGGTGKTTFVKRHLTGEF--EK--K------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY   82 (199)
Q Consensus        19 iG~~~~GKStli~~l~~~~~--~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~   82 (199)
                      +|+.++|||||+++|+...-  ..  .            .....|.+.......+...++.+.+|||||+..+......+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            59999999999999853211  00  0            00112333333333444467899999999998776677778


Q ss_pred             ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                      +..+|++++|+|+++.........|. .+..  .++|+++|+||+|...
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~--~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETVWR-QAEK--YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH--cCCCEEEEEECCCCCC
Confidence            89999999999998865544333332 2222  3789999999999753

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=2e-13  Score=94.87  Aligned_cols=152  Identities=17%  Similarity=0.271  Sum_probs=98.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccccccc---CCcEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI---HGQCAI   90 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~i   90 (199)
                      -.|+++|+.+||||+|+-+|..+.+.+.+.+..     +-...+..+...+.+.|.||+.+.+.....++.   .+-+++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSie-----pn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIE-----PNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeeeeec-----cceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            478999999999999999988775544432221     122222223344889999999998888777776   789999


Q ss_pred             EEEeCCC-hhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCCccccH-------HHH-------------------
Q 029077           91 IMFDVTA-RLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKA-------KQV-------------------  139 (199)
Q Consensus        91 ~v~d~~~-~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~~~~~~-------~~~-------------------  139 (199)
                      ||+|+.. ........+++..+...+    ...|++++.||.|+--....+       .++                   
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~  193 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA  193 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Confidence            9999753 333444444444433332    357899999999974321110       000                   


Q ss_pred             ------------HHH--HHcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077          140 ------------TFH--RKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       140 ------------~~~--~~~~~~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                                  .|.  ....+.+.++|++++ +++++-+||.+++
T Consensus       194 ~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l  238 (238)
T KOG0090|consen  194 KDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL  238 (238)
T ss_pred             ccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence                        000  011234788899888 8999999988753

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=8.9e-13  Score=103.78  Aligned_cols=158  Identities=22%  Similarity=0.234  Sum_probs=113.5

Q ss_pred             CCCccCCCceEEEEEcCCCCCHHHHHHHHhc--------------------CC--C-------CCccccceeEEEeeEEE
Q 029077            5 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLT--------------------GE--F-------EKKYEPTIGVEVHPLDF   55 (199)
Q Consensus         5 ~~~~~~~~~~~i~viG~~~~GKStli~~l~~--------------------~~--~-------~~~~~~~~~~~~~~~~~   55 (199)
                      .++......++.+++|...+|||||+.+++.                    |.  +       .....+..|++......
T Consensus       169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~  248 (603)
T KOG0458|consen  169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT  248 (603)
T ss_pred             ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE
Confidence            3556667889999999999999999998774                    11  1       12234456778888888


Q ss_pred             EecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hHhc--HHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077           56 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKN--VPTWHRDLCRVCENIPIVLCGNKVDVK  130 (199)
Q Consensus        56 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~--~~~~~~~l~~~~~~~p~iiv~~K~D~~  130 (199)
                      +++.....+++.|+||+..|..+...-..++|+.++|+|++..+   .|+.  -.+-+..+.+...-..+++++||+|+.
T Consensus       249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V  328 (603)
T KOG0458|consen  249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLV  328 (603)
T ss_pred             EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeeccccc
Confidence            88888899999999999999999999999999999999998653   2321  112333444444455678888999997


Q ss_pred             C-ccccH-----HHHHHH-HHcC-----CcEEEeccCCCCChHH
Q 029077          131 N-RQVKA-----KQVTFH-RKKN-----LQYYEISAKSNYNFEK  162 (199)
Q Consensus       131 ~-~~~~~-----~~~~~~-~~~~-----~~~~~~s~~~~~~v~~  162 (199)
                      + .+...     ....+. +..|     +.+++||+.+|.|+-.
T Consensus       329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            5 22222     222344 3333     4699999999999843

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.47  E-value=3.1e-13  Score=113.00  Aligned_cols=118  Identities=23%  Similarity=0.168  Sum_probs=80.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCC---------------CCCc---cccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGE---------------FEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (199)
                      ....+|+++|+.++|||||+++|+...               +...   ...|...........+++.++.+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            345799999999999999999987421               1000   0112222222223345667899999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                      ..|.......++.+|++++|+|+.+....+....|.. ...  .+.|.++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK--ENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH--cCCCEEEEEEChhccc
Confidence            9888777888999999999999987533332222222 212  3678889999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK09866 hypothetical protein; Provisional

Probab=99.46  E-value=3e-12  Score=102.95  Aligned_cols=107  Identities=16%  Similarity=0.179  Sum_probs=67.4

Q ss_pred             EEEEEEeCCCcccc-----cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--
Q 029077           62 IRFYCWDTAGQEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--  134 (199)
Q Consensus        62 ~~~~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--  134 (199)
                      ..+.+.||||....     .......+..+|++++|+|.+...+..+ ......+.....+.|+++|+||+|..++..  
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence            45678899996542     1123446889999999999987533222 123333433322369999999999864322  


Q ss_pred             cHHHHHHH----HHcC---CcEEEeccCCCCChHHHHHHHHH
Q 029077          135 KAKQVTFH----RKKN---LQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus       135 ~~~~~~~~----~~~~---~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ......+.    ....   ..+|++||+.|.|+++++..|..
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            12222221    1112   25999999999999997776665

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.46  E-value=1.8e-13  Score=105.91  Aligned_cols=168  Identities=14%  Similarity=0.116  Sum_probs=115.6

Q ss_pred             CCCCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----cccc
Q 029077            3 LPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGL   78 (199)
Q Consensus         3 ~~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~   78 (199)
                      +..-++.+++.-.++++|.+++|||||+|.+.  ....+..|...++..-....++.+-..|++.||||.-.    .+..
T Consensus       158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vt--radvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~  235 (620)
T KOG1490|consen  158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVT--RADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNI  235 (620)
T ss_pred             HhcCCCCCCCcCeEEEecCCCCCcHhhccccc--ccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhH
Confidence            34456678888999999999999999999644  23334444444444444555566778899999999432    1111


Q ss_pred             c-----cccccCCcEEEEEEeCCChh--hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-ccHH---HH-HHHHHcC
Q 029077           79 R-----DGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAK---QV-TFHRKKN  146 (199)
Q Consensus        79 ~-----~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~~~~---~~-~~~~~~~  146 (199)
                      .     .+..+-..+++++.|++...  |...-..++..+.-.+.+.|+|+|.||+|....+ ..++   .. .+....+
T Consensus       236 IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~  315 (620)
T KOG1490|consen  236 IEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN  315 (620)
T ss_pred             HHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC
Confidence            1     22234456788899988544  4555556777777777899999999999986532 2222   22 3444455


Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          147 LQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       147 ~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      ++++++|+.+.+|+.++....+.++.
T Consensus       316 v~v~~tS~~~eegVm~Vrt~ACe~LL  341 (620)
T KOG1490|consen  316 VKVVQTSCVQEEGVMDVRTTACEALL  341 (620)
T ss_pred             ceEEEecccchhceeeHHHHHHHHHH
Confidence            89999999999999888877776664

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.45  E-value=9e-13  Score=94.92  Aligned_cols=169  Identities=10%  Similarity=0.056  Sum_probs=93.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc--------c---cc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------D---GY   82 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~---~~   82 (199)
                      ++|+++|.+||||||++|.+++...........+++..............+.++||||........        .   ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            589999999999999999988665433322112222222222222245778999999953321110        1   12


Q ss_pred             ccCCcEEEEEEeCCChhh-HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc---------HHHHHHHHHcCCcEEEe
Q 029077           83 YIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---------AKQVTFHRKKNLQYYEI  152 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~---------~~~~~~~~~~~~~~~~~  152 (199)
                      ....+++++|+.+..... -.....++..+....--..+++|+|..|.......         .....+.+..+-.|...
T Consensus        81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f  160 (212)
T PF04548_consen   81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVF  160 (212)
T ss_dssp             TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEEC
T ss_pred             cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEE
Confidence            346899999999882211 11122233332221112468888888876543221         11234566677777777


Q ss_pred             ccC------CCCChHHHHHHHHHHHhCCCCCceecC
Q 029077          153 SAK------SNYNFEKPFLYLARKLAGDPNLHFVES  182 (199)
Q Consensus       153 s~~------~~~~v~~~~~~i~~~~~~~~~~~~~~~  182 (199)
                      +..      ....+.+++..+-+.+.++....+..+
T Consensus       161 ~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~  196 (212)
T PF04548_consen  161 NNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNE  196 (212)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-H
T ss_pred             eccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChH
Confidence            666      335789999999998888876655533

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.44  E-value=3.9e-12  Score=99.69  Aligned_cols=155  Identities=16%  Similarity=0.155  Sum_probs=104.9

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEe--eEEEEecCcEEEEEEEeCCCcccccccccccccCC
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (199)
                      ..++.--|-++|...-|||||+..|-.......  ..-|++-.  .+.+.+. ..-.+++.||||+..|...+.--..-.
T Consensus       149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vt  225 (683)
T KOG1145|consen  149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVT  225 (683)
T ss_pred             cCCCCCeEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccc
Confidence            446667889999999999999998554332211  12222211  1222333 336889999999999999888888889


Q ss_pred             cEEEEEEeCCChhhHhcHHHHHHHHHhh-cCCCcEEEEEeCCCCCCccccHHHHHHH------HHc--CCcEEEeccCCC
Q 029077           87 QCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFH------RKK--NLQYYEISAKSN  157 (199)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~p~iiv~~K~D~~~~~~~~~~~~~~------~~~--~~~~~~~s~~~~  157 (199)
                      |.+++|+.++|+---+    ....|... ..++|+++..||+|.++.....-..++.      ..+  ..+++++||++|
T Consensus       226 DIvVLVVAadDGVmpQ----T~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g  301 (683)
T KOG1145|consen  226 DIVVLVVAADDGVMPQ----TLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTG  301 (683)
T ss_pred             cEEEEEEEccCCccHh----HHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence            9999999999864322    22223222 2589999999999988644333222222      222  256999999999


Q ss_pred             CChHHHHHHHHHH
Q 029077          158 YNFEKPFLYLARK  170 (199)
Q Consensus       158 ~~v~~~~~~i~~~  170 (199)
                      .|++.+-+++.-.
T Consensus       302 ~nl~~L~eaill~  314 (683)
T KOG1145|consen  302 ENLDLLEEAILLL  314 (683)
T ss_pred             CChHHHHHHHHHH
Confidence            9999987776543

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.44  E-value=1.4e-13  Score=90.69  Aligned_cols=113  Identities=25%  Similarity=0.272  Sum_probs=78.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccc-cceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      +||+++|..|+|||+|+.++..+.+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999987666654333 3333                           222334456778999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      |+.++..++..+  |...+.... .+.|.++++||.|+.+.....      ...+..++++|+++|.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~------~~~~~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVA------TEEGLEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCC------HHHHHHHHHHhCCCcchhh
Confidence            999999988755  776665443 468889999999985432111      1122346678889998874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.43  E-value=5.2e-12  Score=93.29  Aligned_cols=163  Identities=18%  Similarity=0.261  Sum_probs=112.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc--EEEEEEEeCCCccccccccccccc---
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYI---   84 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~---   84 (199)
                      -+.--+|+|+|+.|+|||||+.+|- +..  .+.+..|..+....+.-+++  -.++.+|-..|.-....+....+.   
T Consensus        49 lpsgk~VlvlGdn~sGKtsLi~klq-g~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats  125 (473)
T KOG3905|consen   49 LPSGKNVLVLGDNGSGKTSLISKLQ-GSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATS  125 (473)
T ss_pred             CCCCCeEEEEccCCCchhHHHHHhh-ccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccC
Confidence            3455689999999999999999954 332  44456666666666654433  367888988775443333333222   


Q ss_pred             -CCcEEEEEEeCCChhh-HhcHHHHHHHHHhhc-----------------------------------------------
Q 029077           85 -HGQCAIIMFDVTARLT-YKNVPTWHRDLCRVC-----------------------------------------------  115 (199)
Q Consensus        85 -~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~-----------------------------------------------  115 (199)
                       .--.+|++.|++++.. ++.+.+|..-+.+..                                               
T Consensus       126 ~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~d  205 (473)
T KOG3905|consen  126 LAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSAD  205 (473)
T ss_pred             ccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccc
Confidence             2357888999999844 445666665443110                                               


Q ss_pred             ---------------CCCcEEEEEeCCCCCC-----cc--------ccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077          116 ---------------ENIPIVLCGNKVDVKN-----RQ--------VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus       116 ---------------~~~p~iiv~~K~D~~~-----~~--------~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                                     -.+|+++|.||+|...     .+        +......||..+|...+++|++...|++-++.+|
T Consensus       206 e~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYi  285 (473)
T KOG3905|consen  206 EHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYI  285 (473)
T ss_pred             cccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHH
Confidence                           0248999999999721     11        2233457899999999999999999999999999


Q ss_pred             HHHHhCCC
Q 029077          168 ARKLAGDP  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      .+.++.-+
T Consensus       286 vhr~yG~~  293 (473)
T KOG3905|consen  286 VHRSYGFP  293 (473)
T ss_pred             HHHhcCcc
Confidence            99887544

>PRK13768 GTPase; Provisional

Probab=99.42  E-value=1.5e-12  Score=96.11  Aligned_cols=111  Identities=14%  Similarity=0.155  Sum_probs=70.2

Q ss_pred             EEEEEeCCCcccc---ccccccc---ccC--CcEEEEEEeCCChhhHhc--HHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077           63 RFYCWDTAGQEKF---GGLRDGY---YIH--GQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (199)
Q Consensus        63 ~~~l~D~~g~~~~---~~~~~~~---~~~--~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~p~iiv~~K~D~~~~  132 (199)
                      .+.+||+||+.+.   +.....+   +..  .+++++++|++.......  ...|+........+.|+++|+||+|+.+.
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            6889999997553   2222222   222  899999999975432222  11223222222248999999999998654


Q ss_pred             cccHHHHH----------------------------HHHHcC--CcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          133 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       133 ~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      ....+...                            ..+..+  .+++++|++++.|+++++++|.+.+..
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            32221111                            112223  478999999999999999999988754

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.41  E-value=3.5e-12  Score=95.12  Aligned_cols=150  Identities=19%  Similarity=0.230  Sum_probs=106.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCC------------C-------------------ccccceeEEEeeEEEEec
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE------------K-------------------KYEPTIGVEVHPLDFFTN   58 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~------------~-------------------~~~~~~~~~~~~~~~~~~   58 (199)
                      +...+|.+-+|+..-|||||+-||+.....            .                   ......|++...-...+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            356789999999999999999998742110            0                   001123444444444556


Q ss_pred             CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc------
Q 029077           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR------  132 (199)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~------  132 (199)
                      ....+|.+-||||++.|-.++..-...||..|+++|+..+-  .+-.+-+..+.....-+.+++.+||+|+.+-      
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv--l~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~  160 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV--LEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFE  160 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh--HHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHH
Confidence            66788999999999998888877888999999999996542  2223333444444455778888999999872      


Q ss_pred             cccHHHHHHHHHcCC---cEEEeccCCCCChH
Q 029077          133 QVKAKQVTFHRKKNL---QYYEISAKSNYNFE  161 (199)
Q Consensus       133 ~~~~~~~~~~~~~~~---~~~~~s~~~~~~v~  161 (199)
                      .+..+-..++..+++   .++++||+.|.|+-
T Consensus       161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            233344578888875   49999999999983

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.41  E-value=1.8e-11  Score=96.52  Aligned_cols=164  Identities=15%  Similarity=0.156  Sum_probs=115.4

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      ..+.+.+++.++|+.++|||.+++.++++.+...+..+....+..-.....+....+.+.|.+-. ........- ..||
T Consensus       420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD  497 (625)
T KOG1707|consen  420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD  497 (625)
T ss_pred             cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence            44577889999999999999999999988887655555543333333333455566677776643 222222222 6799


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc--ccHHHHHHHHHcCCc-EEEeccCCCCChHHHH
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPF  164 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~--~~~~~~~~~~~~~~~-~~~~s~~~~~~v~~~~  164 (199)
                      ++.++||.+++.+|..+...+..-... .+.|+++|++|.|+.+..  .....-+++..++++ ....|.+.... .++|
T Consensus       498 v~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf  575 (625)
T KOG1707|consen  498 VACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELF  575 (625)
T ss_pred             eEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHH
Confidence            999999999999998877665544433 689999999999998743  333337788888875 55566664223 8899


Q ss_pred             HHHHHHHhCCC
Q 029077          165 LYLARKLAGDP  175 (199)
Q Consensus       165 ~~i~~~~~~~~  175 (199)
                      ..|+.+....+
T Consensus       576 ~kL~~~A~~Ph  586 (625)
T KOG1707|consen  576 IKLATMAQYPH  586 (625)
T ss_pred             HHHHHhhhCCC
Confidence            99988877655

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.41  E-value=4.1e-12  Score=94.82  Aligned_cols=121  Identities=12%  Similarity=0.132  Sum_probs=69.3

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc-------c
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------D   80 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------~   80 (199)
                      ..+.+.++|+++|.+|+||||++|++++..... .....+.+..............+.++||||........       .
T Consensus        33 ~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~-vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik  111 (313)
T TIGR00991        33 EEDVSSLTILVMGKGGVGKSSTVNSIIGERIAT-VSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIK  111 (313)
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHhCCCccc-ccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence            345788999999999999999999988554211 11111111111111122245789999999976532111       1


Q ss_pred             ccc--cCCcEEEEEEeCCChhhHhcH-HHHHHHHHhhcC---CCcEEEEEeCCCCC
Q 029077           81 GYY--IHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK  130 (199)
Q Consensus        81 ~~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~---~~p~iiv~~K~D~~  130 (199)
                      .++  ...|++++|..++... +... ...+..+...+.   -.+.|+++|+.|..
T Consensus       112 ~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~  166 (313)
T TIGR00991       112 RFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS  166 (313)
T ss_pred             HHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence            111  2589999996654321 1111 122333333221   35789999999964

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.40  E-value=4.5e-12  Score=93.00  Aligned_cols=121  Identities=9%  Similarity=0.034  Sum_probs=69.4

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc---c------
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---L------   78 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~------   78 (199)
                      +.....++|+|+|.+|||||||+|++++...... ....+.+.....+........+.++||||......   .      
T Consensus        26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~  104 (249)
T cd01853          26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAAT-SAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILS  104 (249)
T ss_pred             hhccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHH
Confidence            3456779999999999999999999876543211 11111122222222222346789999999664311   1      


Q ss_pred             -cccccc--CCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcC---CCcEEEEEeCCCCC
Q 029077           79 -RDGYYI--HGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVK  130 (199)
Q Consensus        79 -~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~---~~p~iiv~~K~D~~  130 (199)
                       ...++.  ..+++++|..++... ... -...+..+...+.   -.++++|.||+|..
T Consensus       105 ~I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853         105 SIKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence             111222  567888887665432 111 1123333333222   25799999999974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.40  E-value=1.4e-11  Score=87.63  Aligned_cols=99  Identities=11%  Similarity=0.079  Sum_probs=60.7

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcE--EEEEeCCCCCCc--cccHH
Q 029077           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI--VLCGNKVDVKNR--QVKAK  137 (199)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~--iiv~~K~D~~~~--~~~~~  137 (199)
                      ....++++.|..-..... .  .-++.+|.|+|+.+..+...  .+.       .++..  ++++||.|+.+.  .....
T Consensus        92 ~D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~-------~qi~~ad~~~~~k~d~~~~~~~~~~~  159 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGG-------PGITRSDLLVINKIDLAPMVGADLGV  159 (199)
T ss_pred             CCEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhH-------hHhhhccEEEEEhhhccccccccHHH
Confidence            445566777632111111 1  12577999999987665321  111       13333  788999999852  11111


Q ss_pred             HHHHHH--HcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          138 QVTFHR--KKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       138 ~~~~~~--~~~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      ..+..+  ..+.+++++|+++|.|+++++++|.+.+.
T Consensus       160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            122222  34678999999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.39  E-value=1.4e-11  Score=95.06  Aligned_cols=161  Identities=17%  Similarity=0.230  Sum_probs=115.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc--CCCC------------CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFE------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG   77 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (199)
                      .--+|+++-...-|||||+..|+.  +.|.            .......|++.-.++.-+..+++.+++.||||+..|..
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            445899999999999999999874  2221            22334567777777766777889999999999999999


Q ss_pred             cccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc---ccHHHHHHHH-------HcCC
Q 029077           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQVTFHR-------KKNL  147 (199)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~---~~~~~~~~~~-------~~~~  147 (199)
                      ...-.+.=.|++++++|+.++.--+.--.....+.   .+.+-|+|+||+|.++..   +..+..++.-       ++.+
T Consensus        84 EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF  160 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF  160 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence            99999999999999999998753332222222222   267778889999998743   2334444332       3567


Q ss_pred             cEEEeccCCCC----------ChHHHHHHHHHHHhCCC
Q 029077          148 QYYEISAKSNY----------NFEKPFLYLARKLAGDP  175 (199)
Q Consensus       148 ~~~~~s~~~~~----------~v~~~~~~i~~~~~~~~  175 (199)
                      ++++.|+..|.          ++..+|+.|.+.+....
T Consensus       161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            88998988764          35678888888776433

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.39  E-value=2.7e-12  Score=94.26  Aligned_cols=95  Identities=15%  Similarity=0.118  Sum_probs=77.3

Q ss_pred             ccccccccccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc-cHHHHHHHHHcCCcEE
Q 029077           73 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYY  150 (199)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-~~~~~~~~~~~~~~~~  150 (199)
                      ++++.+.+.+++++|.+++|+|++++. ++..+..|+..+..  .++|+++|+||.|+.+... ..+........++.++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~  101 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL  101 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence            567788888999999999999999877 88889999876654  4899999999999965332 2233444556788999


Q ss_pred             EeccCCCCChHHHHHHHHH
Q 029077          151 EISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus       151 ~~s~~~~~~v~~~~~~i~~  169 (199)
                      ++||++|.|++++|..+.+
T Consensus       102 ~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       102 MTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEecCCchhHHHHHhhhcC
Confidence            9999999999999987764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd00066 G-alpha G protein alpha subunit

Probab=99.37  E-value=1.1e-11  Score=94.29  Aligned_cols=114  Identities=15%  Similarity=0.141  Sum_probs=76.4

Q ss_pred             cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh----------hhHhcHHHHHHHHHhh--cCCCcEEEEEeCC
Q 029077           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~  127 (199)
                      .+..+.+||++|+...+..|..++.+++++++|+|+++-          ..+.+....+..+...  ..++|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            467789999999999999999999999999999999863          2233322333333222  2579999999999


Q ss_pred             CCCCcc------------------ccHHHHHH-----HH-----HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          128 DVKNRQ------------------VKAKQVTF-----HR-----KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       128 D~~~~~------------------~~~~~~~~-----~~-----~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      |+-.+.                  .......+     ..     ...+..+.++|.+-.+++.+|..+...+..
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~  312 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQ  312 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHH
Confidence            953211                  11111111     11     123445677888888888888888777654

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.37  E-value=3.2e-12  Score=97.77  Aligned_cols=160  Identities=18%  Similarity=0.234  Sum_probs=78.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeE---EEeeEEEEecCcEEEEEEEeCCCcccccccccc-----
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG-----   81 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~-----   81 (199)
                      +..+++|+|+|.+|+|||||+|.|.+-..........|+   +.....+. ......+.+||.||..........     
T Consensus        32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~-~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYP-HPKFPNVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred             hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCC-CCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence            456799999999999999999997542222221122221   11222221 123346899999996442222222     


Q ss_pred             cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCC--CCc------ccc-----HHH----HHHHHH
Q 029077           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV--KNR------QVK-----AKQ----VTFHRK  144 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~--~~~------~~~-----~~~----~~~~~~  144 (199)
                      -+...|.+|++.+-.-.+.-..   ....+.+.  ++|+.+|-||.|.  .+.      ...     ++.    .+-.+.
T Consensus       111 ~~~~yD~fiii~s~rf~~ndv~---La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  111 KFYRYDFFIIISSERFTENDVQ---LAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             TGGG-SEEEEEESSS--HHHHH---HHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred             cccccCEEEEEeCCCCchhhHH---HHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence            3667898888766443222111   22333333  8999999999995  111      111     111    122222


Q ss_pred             cCC---cEEEeccCC--CCChHHHHHHHHHHHhCCC
Q 029077          145 KNL---QYYEISAKS--NYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       145 ~~~---~~~~~s~~~--~~~v~~~~~~i~~~~~~~~  175 (199)
                      .++   ++|.+|..+  ..++..+.+.|.+-+....
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K  221 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK  221 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence            233   488888864  3567888888877765433

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.35  E-value=2e-11  Score=92.66  Aligned_cols=102  Identities=11%  Similarity=0.008  Sum_probs=65.4

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH---
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---  137 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~---  137 (199)
                      .+.+.++||+|.....   ......+|.++++.+...+...+....   .+.    ...-++|+||+|+........   
T Consensus       148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~----E~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKK---GIM----ELADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHh---hhh----hhhheEEeehhcccchhHHHHHHH
Confidence            5788999999965322   224667999999976544444433332   111    222379999999875432111   


Q ss_pred             -HHHHHHH-------cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          138 -QVTFHRK-------KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       138 -~~~~~~~-------~~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                       .......       +..+++.+|+.+|.|++++++.|.+.+.
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence             1111111       2257999999999999999999998765

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.35  E-value=3.9e-12  Score=108.03  Aligned_cols=118  Identities=15%  Similarity=0.195  Sum_probs=81.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCC--C---------cc---ccceeEEEee--EEEEe--------------cC
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--K---------KY---EPTIGVEVHP--LDFFT--------------NC   59 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~--~---------~~---~~~~~~~~~~--~~~~~--------------~~   59 (199)
                      ..+.-+|+|+|+.++|||||+.+|+...-.  .         .+   ....|.+...  ....+              ++
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            345669999999999999999998743210  0         00   0011222221  11111              22


Q ss_pred             cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~  130 (199)
                      .++.++++||||+..|.......++.+|++|+|+|+.++-..+....|.... .  .++|.++++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~-~--~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G--ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH-H--CCCCEEEEEECCccc
Confidence            4678899999999998888888889999999999999875544444443322 2  388999999999987

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.34  E-value=5.4e-11  Score=94.18  Aligned_cols=165  Identities=21%  Similarity=0.281  Sum_probs=113.9

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC--cEEEEEEEeCCCccccccccccccc--
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC--GKIRFYCWDTAGQEKFGGLRDGYYI--   84 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~~~~~~~~--   84 (199)
                      .....-.|+|+|..++|||||+.+|.. .  ..+.++.|.++....+.-++  ...++.+|-..|...+..+....+.  
T Consensus        21 ~~~~~k~vlvlG~~~~GKttli~~L~~-~--e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~   97 (472)
T PF05783_consen   21 KLPSEKSVLVLGDKGSGKTTLIARLQG-I--EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE   97 (472)
T ss_pred             cCCCCceEEEEeCCCCchHHHHHHhhc-c--CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence            345567999999999999999999643 2  23456777777777664432  2357899999886666565544443  


Q ss_pred             --CCcEEEEEEeCCChhhHh-cHHHHHHHHH-------------------------hhc---------------------
Q 029077           85 --HGQCAIIMFDVTARLTYK-NVPTWHRDLC-------------------------RVC---------------------  115 (199)
Q Consensus        85 --~~d~~i~v~d~~~~~s~~-~~~~~~~~l~-------------------------~~~---------------------  115 (199)
                        .--.+++|.|.+.+..+. .+..|+..+.                         ++.                     
T Consensus        98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~  177 (472)
T PF05783_consen   98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS  177 (472)
T ss_pred             cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence              235778999999886542 3444443321                         000                     


Q ss_pred             -----------------CCCcEEEEEeCCCCCC----cc---------ccHHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077          116 -----------------ENIPIVLCGNKVDVKN----RQ---------VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus       116 -----------------~~~p~iiv~~K~D~~~----~~---------~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                                       -.+|++||++|.|.-.    ..         +.+..+.+|..+|+..+++|++...+++.++.
T Consensus       178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~  257 (472)
T PF05783_consen  178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK  257 (472)
T ss_pred             ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence                             0259999999999632    11         11224478889999999999999999999999


Q ss_pred             HHHHHHhCCCC
Q 029077          166 YLARKLAGDPN  176 (199)
Q Consensus       166 ~i~~~~~~~~~  176 (199)
                      +|.+.+...+.
T Consensus       258 yi~h~l~~~~f  268 (472)
T PF05783_consen  258 YILHRLYGFPF  268 (472)
T ss_pred             HHHHHhccCCC
Confidence            99999876553

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>cd01882 BMS1 Bms1

Probab=99.33  E-value=4.4e-11  Score=86.90  Aligned_cols=140  Identities=14%  Similarity=0.178  Sum_probs=82.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ..+...|+++|.+|+|||||++.+.............|.    ... .......+.++|+||.-   .......+.+|++
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH---HHHHHHHHhcCEE
Confidence            456688999999999999999987643222111112221    111 12245678899999853   2223346789999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhcCCCcE-EEEEeCCCCCCccc-cHH---HH-H-HHH--HcCCcEEEeccCCCCCh
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQV-KAK---QV-T-FHR--KKNLQYYEISAKSNYNF  160 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~-iiv~~K~D~~~~~~-~~~---~~-~-~~~--~~~~~~~~~s~~~~~~v  160 (199)
                      ++++|++....... ..+...+...  +.|. ++|+||+|+.+... ..+   .+ . +..  ..+.+++.+||++...+
T Consensus       108 llviDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~  184 (225)
T cd01882         108 LLLIDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY  184 (225)
T ss_pred             EEEEecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence            99999876433221 1223333222  5674 55999999863221 111   11 1 221  13467999999988655

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>smart00275 G_alpha G protein alpha subunit

Probab=99.33  E-value=1.1e-11  Score=95.09  Aligned_cols=114  Identities=17%  Similarity=0.150  Sum_probs=75.8

Q ss_pred             cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCCh----------hhHhcHHHHHHHHHhh--cCCCcEEEEEeCC
Q 029077           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~  127 (199)
                      .+..+.+||.+|+...+..|..++.+++++|+|+|+++-          ..+.+....+..+...  ..+.|+++++||.
T Consensus       182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~  261 (342)
T smart00275      182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI  261 (342)
T ss_pred             CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence            456778999999999999999999999999999999863          1233333333333322  2579999999999


Q ss_pred             CCCCcc-----------------ccHHHH-----HHHHH------cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          128 DVKNRQ-----------------VKAKQV-----TFHRK------KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       128 D~~~~~-----------------~~~~~~-----~~~~~------~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      |+-.+.                 ......     .+...      ..+..+.++|.+-.++..+|..+...+..
T Consensus       262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~  335 (342)
T smart00275      262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQ  335 (342)
T ss_pred             HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHH
Confidence            963211                 011111     11111      12345667888888888888877776653

Subunit of G proteins that contains the guanine nucleotide binding site

>PTZ00416 elongation factor 2; Provisional

Probab=99.31  E-value=1.2e-11  Score=104.90  Aligned_cols=116  Identities=17%  Similarity=0.204  Sum_probs=78.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCC--CCc------------cccceeEEEee--EEEEec--------CcEEEEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK------------YEPTIGVEVHP--LDFFTN--------CGKIRFYCW   67 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~--~~~------------~~~~~~~~~~~--~~~~~~--------~~~~~~~l~   67 (199)
                      +..+|+++|+.++|||||+++|+...-  ...            .....|.+...  ......        ++++.+.++
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            345999999999999999999875211  000            00111222221  111121        236789999


Q ss_pred             eCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077           68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (199)
Q Consensus        68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~  130 (199)
                      ||||+..+.......++.+|++|+|+|+.++-..+....| ..+..  .++|+++++||+|+.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~--~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ--ERIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH--cCCCEEEEEEChhhh
Confidence            9999998877778888999999999999886544433333 22322  268999999999987

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.29  E-value=9.4e-12  Score=87.73  Aligned_cols=142  Identities=22%  Similarity=0.331  Sum_probs=90.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc-----cccccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-----GLRDGY   82 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-----~~~~~~   82 (199)
                      ..-||+++|.+|+|||++-..++. .+..    ....|..++-..+++-   ++..+.+||++|++.+-     ......
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~-ny~a~D~~rlg~tidveHsh~Rfl---Gnl~LnlwDcGgqe~fmen~~~~q~d~i   78 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFA-NYIARDTRRLGATIDVEHSHVRFL---GNLVLNLWDCGGQEEFMENYLSSQEDNI   78 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhh-hhhhhhhhccCCcceeeehhhhhh---hhheeehhccCCcHHHHHHHHhhcchhh
Confidence            346899999999999998765432 2211    1122333333333221   46788999999998532     234557


Q ss_pred             ccCCcEEEEEEeCCChhhHhcHHH---HHHHHHhhcCCCcEEEEEeCCCCCCccccHH--------HHHHHHHcCCcEEE
Q 029077           83 YIHGQCAIIMFDVTARLTYKNVPT---WHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--------QVTFHRKKNLQYYE  151 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~---~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~--------~~~~~~~~~~~~~~  151 (199)
                      +++.+++++|||+...+-..++..   .+..+.+..+...+.+..+|+|+........        ...+.+..++.++.
T Consensus        79 F~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~  158 (295)
T KOG3886|consen   79 FRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFP  158 (295)
T ss_pred             heeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccc
Confidence            899999999999987765444443   4455666677888888899999965332221        11233344566788


Q ss_pred             eccCCC
Q 029077          152 ISAKSN  157 (199)
Q Consensus       152 ~s~~~~  157 (199)
                      +|..+.
T Consensus       159 TsiwDe  164 (295)
T KOG3886|consen  159 TSIWDE  164 (295)
T ss_pred             cchhhH
Confidence            877753

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.28  E-value=5.9e-11  Score=85.91  Aligned_cols=111  Identities=17%  Similarity=0.243  Sum_probs=65.6

Q ss_pred             EEEEEEEeCCCccc-ccccccc-----ccc--CCcEEEEEEeCCChh---hHhcH-HHHHHHHHhhcCCCcEEEEEeCCC
Q 029077           61 KIRFYCWDTAGQEK-FGGLRDG-----YYI--HGQCAIIMFDVTARL---TYKNV-PTWHRDLCRVCENIPIVLCGNKVD  128 (199)
Q Consensus        61 ~~~~~l~D~~g~~~-~~~~~~~-----~~~--~~d~~i~v~d~~~~~---s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D  128 (199)
                      ...+.++||||+-. |.+....     .+.  ..-++++++|.....   .|-.- -+.-..+.+  -+.|+|++.||.|
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~D  192 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTD  192 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEeccc
Confidence            46688999999743 3222221     122  235666777754332   22211 111122222  4899999999999


Q ss_pred             CCCccccHHHH------H-------------HHH---------HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          129 VKNRQVKAKQV------T-------------FHR---------KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       129 ~~~~~~~~~~~------~-------------~~~---------~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      +.+.....+..      +             +.+         ..++....+|+.+|.|+++.|..+-..+.+
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE  265 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence            98754432211      0             000         123567889999999999999988877743

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.27  E-value=2.5e-10  Score=87.80  Aligned_cols=162  Identities=17%  Similarity=0.181  Sum_probs=96.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC----CCCC----------cccccee---EEEeeEE-------EEe-cCcEEEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTG----EFEK----------KYEPTIG---VEVHPLD-------FFT-NCGKIRFY   65 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~----~~~~----------~~~~~~~---~~~~~~~-------~~~-~~~~~~~~   65 (199)
                      ..++.|+|+|+.++|||||+|+|+..    ....          -+.+..|   ++..++.       +.. ++-...+.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            34689999999999999999998865    2210          2233444   3333322       222 34567899


Q ss_pred             EEeCCCccc--------ccc---c------------------cccccc-CCcEEEEEE-eCC----ChhhHhc-HHHHHH
Q 029077           66 CWDTAGQEK--------FGG---L------------------RDGYYI-HGQCAIIMF-DVT----ARLTYKN-VPTWHR  109 (199)
Q Consensus        66 l~D~~g~~~--------~~~---~------------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~-~~~~~~  109 (199)
                      ++||+|...        ...   .                  .+..+. .++..|+|. |.+    .++.+.. -..++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            999998321        111   0                  112233 788888887 553    1122322 235777


Q ss_pred             HHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077          110 DLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       110 ~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~  175 (199)
                      .+...  ++|++++.|+.|-...........+...++.+++.+|+..- .-+++..-+.+.+.+-|
T Consensus       175 eLk~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l-~~~DI~~il~~vL~EFP  237 (492)
T TIGR02836       175 ELKEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESM-RESDILSVLEEVLYEFP  237 (492)
T ss_pred             HHHhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHc-CHHHHHHHHHHHHhcCC
Confidence            77766  99999999999954333222233555667888777777532 23444444555555544

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.26  E-value=1.6e-10  Score=83.07  Aligned_cols=150  Identities=13%  Similarity=0.141  Sum_probs=80.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCC--------c----cc----cceeEEEeeEEE----------------Eec
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK--------K----YE----PTIGVEVHPLDF----------------FTN   58 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~--------~----~~----~~~~~~~~~~~~----------------~~~   58 (199)
                      .....|+++|+.|+|||||+++++......        .    ..    ...|........                ...
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            346789999999999999999977431100        0    00    000100000000                000


Q ss_pred             CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--cH
Q 029077           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA  136 (199)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--~~  136 (199)
                      .....+.+.++.|.-..   ...+....+..+.|+|+.+.....  .. ....    ...|.++++||+|+.+...  ..
T Consensus       100 ~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~~--~~-~~~~----~~~a~iiv~NK~Dl~~~~~~~~~  169 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDKP--LK-YPGM----FKEADLIVINKADLAEAVGFDVE  169 (207)
T ss_pred             cCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccchh--hh-hHhH----HhhCCEEEEEHHHccccchhhHH
Confidence            11345566666662100   011112334455677776443211  01 0111    1567899999999975322  12


Q ss_pred             HHHHHHHH--cCCcEEEeccCCCCChHHHHHHHHHH
Q 029077          137 KQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus       137 ~~~~~~~~--~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      +.....+.  ...+++++|+++|.|++++++++.+.
T Consensus       170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            22222333  24789999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.25  E-value=1.6e-10  Score=98.90  Aligned_cols=102  Identities=20%  Similarity=0.290  Sum_probs=70.3

Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCCh---hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cc----
Q 029077           63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV----  134 (199)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~----  134 (199)
                      .+.+|||||++.|...+...+..+|++++|+|+++.   .++..+.    .+..  .++|+++|+||+|+... ..    
T Consensus       527 ~i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~--~~iPiIVViNKiDL~~~~~~~~~~  600 (1049)
T PRK14845        527 GLLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ--YKTPFVVAANKIDLIPGWNISEDE  600 (1049)
T ss_pred             cEEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH--cCCCEEEEEECCCCccccccccch
Confidence            389999999999888777778889999999999873   3333222    2222  27899999999998531 10    


Q ss_pred             ---------cHHHH-H-------H---HHH---------------cCCcEEEeccCCCCChHHHHHHHHHH
Q 029077          135 ---------KAKQV-T-------F---HRK---------------KNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus       135 ---------~~~~~-~-------~---~~~---------------~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                               .+... +       +   ...               ..++++++||++|.|+++++.+|...
T Consensus       601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence                     00000 0       0   111               13578999999999999999877543

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.23  E-value=5.5e-11  Score=99.89  Aligned_cols=116  Identities=22%  Similarity=0.232  Sum_probs=77.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCC--CCc---------c---ccceeEEEe----eEEEEecCcEEEEEEEeCCCcc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK---------Y---EPTIGVEVH----PLDFFTNCGKIRFYCWDTAGQE   73 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~--~~~---------~---~~~~~~~~~----~~~~~~~~~~~~~~l~D~~g~~   73 (199)
                      +.-+|+++|+.++|||||+.+|+...-  ...         +   ....|.+..    ......++.++.+.++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            445799999999999999999874221  100         0   001122211    1122234457889999999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (199)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~  130 (199)
                      .|.......++.+|++++|+|+......+....|... ..  .+.|.++++||+|..
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~--~~~~~iv~iNK~D~~  152 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LR--ERVKPVLFINKVDRL  152 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HH--cCCCeEEEEECchhh
Confidence            8877778888999999999999876443333333322 22  256788999999975

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.22  E-value=1.9e-11  Score=89.21  Aligned_cols=109  Identities=15%  Similarity=0.160  Sum_probs=54.8

Q ss_pred             EEEEEeCCCccccccccccc------c--cCCcEEEEEEeCCChhh-HhcHHHHHHHHHh-hcCCCcEEEEEeCCCCCCc
Q 029077           63 RFYCWDTAGQEKFGGLRDGY------Y--IHGQCAIIMFDVTARLT-YKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR  132 (199)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~------~--~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~-~~~~~p~iiv~~K~D~~~~  132 (199)
                      .+.++|||||-++-..+...      +  ...-++++++|+....+ ...+..++..+.. ..-+.|.+.|.||+|+.+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            78899999987754433322      1  23456778888653322 1111222221111 1138999999999999762


Q ss_pred             ccc--HH-------------------HHHHHH---HcC-C-cEEEeccCCCCChHHHHHHHHHHH
Q 029077          133 QVK--AK-------------------QVTFHR---KKN-L-QYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       133 ~~~--~~-------------------~~~~~~---~~~-~-~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      ...  .+                   ..++++   ..+ . .++.+|+.++.++.+++..+-+++
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            200  00                   001111   112 2 699999999999999999887765

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=2.4e-10  Score=83.59  Aligned_cols=179  Identities=17%  Similarity=0.140  Sum_probs=117.5

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhc---CC-------CC----CccccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLT---GE-------FE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~---~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (199)
                      +.-..++++|..+|.-.-|||||...+..   ..       +.    .......|++.....+.++..+..+...|+||+
T Consensus         6 f~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGH   85 (394)
T COG0050           6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGH   85 (394)
T ss_pred             hcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCCh
Confidence            34457889999999999999999876442   11       10    111224677777777777777788899999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccc-----cHHHHHHHHHcC
Q 029077           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN  146 (199)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~-----~~~~~~~~~~~~  146 (199)
                      ..|-.++..-..+.|+.|+|++++|...-+.....+  +.+.. ..| ++++.||+|+.+...     ..+..++...++
T Consensus        86 aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larqv-Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~  162 (394)
T COG0050          86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQV-GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYG  162 (394)
T ss_pred             HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhhc-CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcC
Confidence            999888888888999999999999876544333221  22222 565 456669999987332     234457777777


Q ss_pred             Cc-----EEEeccCC-CCC-------hHHHHHHHHHHHhCCCCCceecCCCCCCccc
Q 029077          147 LQ-----YYEISAKS-NYN-------FEKPFLYLARKLAGDPNLHFVESPALAPPEV  190 (199)
Q Consensus       147 ~~-----~~~~s~~~-~~~-------v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~  190 (199)
                      ++     ++.-|++. .+|       +.++++++.+.+....+  -.|.|++.+.+.
T Consensus       163 f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per--~~dkPflmpvEd  217 (394)
T COG0050         163 FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER--DIDKPFLMPVED  217 (394)
T ss_pred             CCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC--ccccccccccee
Confidence            54     66666542 222       35555555554443332  367777776553

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.21  E-value=1.1e-11  Score=90.30  Aligned_cols=43  Identities=21%  Similarity=0.322  Sum_probs=35.4

Q ss_pred             EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       149 ~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .-.++.++|...+.  .+|++++++++.++++|||+.+     +|..+|-
T Consensus       133 ~r~~~~LSGGerQr--v~iArALaQ~~~iLLLDEPTs~-----LDi~~Q~  175 (258)
T COG1120         133 DRPVDELSGGERQR--VLIARALAQETPILLLDEPTSH-----LDIAHQI  175 (258)
T ss_pred             cCcccccChhHHHH--HHHHHHHhcCCCEEEeCCCccc-----cCHHHHH
Confidence            34467777755555  6699999999999999999999     9999873

>PTZ00258 GTP-binding protein; Provisional

Probab=99.21  E-value=4.4e-10  Score=87.02  Aligned_cols=84  Identities=15%  Similarity=-0.050  Sum_probs=51.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEe--cCc---------------EEEEEEEeCCCcc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCG---------------KIRFYCWDTAGQE   73 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~l~D~~g~~   73 (199)
                      ..-++|+++|.+|||||||+|.|......  .....+++..+....+  .+.               ...+.+.|+||..
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~--v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVP--AENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCccc--ccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            55679999999999999999997543322  1112222222222111  111               2358999999964


Q ss_pred             cccc-------cccccccCCcEEEEEEeCC
Q 029077           74 KFGG-------LRDGYYIHGQCAIIMFDVT   96 (199)
Q Consensus        74 ~~~~-------~~~~~~~~~d~~i~v~d~~   96 (199)
                      ....       .....++++|++++|+|+.
T Consensus        97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            3211       1122467899999999973

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.20  E-value=8.7e-12  Score=90.43  Aligned_cols=45  Identities=31%  Similarity=0.472  Sum_probs=38.8

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          147 LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       147 ~~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.--.+..++|...+.+|  |++++..+|+++++|||+.+     +|.+.++
T Consensus       132 ~~~r~i~~LSGGQ~QRV~--lARAL~~~p~lllLDEP~~g-----vD~~~~~  176 (254)
T COG1121         132 LRDRQIGELSGGQKQRVL--LARALAQNPDLLLLDEPFTG-----VDVAGQK  176 (254)
T ss_pred             hhCCcccccCcHHHHHHH--HHHHhccCCCEEEecCCccc-----CCHHHHH
Confidence            334457889999889877  99999999999999999999     9988764

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=3.5e-10  Score=93.34  Aligned_cols=121  Identities=19%  Similarity=0.152  Sum_probs=91.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCC--CC--Cc------------cccceeEEEeeEEEEecCc-EEEEEEEeCCCc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FE--KK------------YEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQ   72 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~--~~------------~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~   72 (199)
                      ..+.-+|+++|+..+|||||..+++...  ..  +.            .....|.+.......+... ++.++++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            3456799999999999999999987421  11  01            1123455555555555445 599999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (199)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~  133 (199)
                      -+|.......++-+|++++|+|+...-..+.-..|......   ++|.++++||+|.....
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDRLGAD  144 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccccccC
Confidence            99999999999999999999999988666665566654433   89999999999986543

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=6.9e-10  Score=82.93  Aligned_cols=162  Identities=18%  Similarity=0.166  Sum_probs=95.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC----CCCCccc-cceeEEEe----eEEEE-----ecCcEEEEEEEeCCCccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTG----EFEKKYE-PTIGVEVH----PLDFF-----TNCGKIRFYCWDTAGQEKFG   76 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~----~~~~~~~-~~~~~~~~----~~~~~-----~~~~~~~~~l~D~~g~~~~~   76 (199)
                      +..++++++|...||||||.+++..-    .|+.... .+.|.+..    .....     -.+....+.+.|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            34599999999999999999996631    2222221 12333221    11111     13455788999999987644


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHH----HHHHHH-------
Q 029077           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQ----VTFHRK-------  144 (199)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~----~~~~~~-------  144 (199)
                      ........-.|..++|+|+..+.--+.+.-.+  +.+. -....++|.||.|...+ +.....    ....+.       
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLi--ig~~-~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~  161 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLI--IGEL-LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD  161 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhh--hhhh-hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence            44444456679999999998765444333221  1111 14456677788886432 221111    112221       


Q ss_pred             cCCcEEEeccCCC----CChHHHHHHHHHHHhCCC
Q 029077          145 KNLQYYEISAKSN----YNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       145 ~~~~~~~~s~~~~----~~v~~~~~~i~~~~~~~~  175 (199)
                      .+.+++++|+..|    .++.++.+.|.+++.+..
T Consensus       162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~  196 (522)
T KOG0461|consen  162 GNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK  196 (522)
T ss_pred             CCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence            1368999999999    566666666666655433

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.14  E-value=1.4e-09  Score=81.27  Aligned_cols=139  Identities=17%  Similarity=0.208  Sum_probs=74.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCcc----------ccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc----
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----   78 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----   78 (199)
                      .++|+|+|.+|+|||||+|.|+........          ..+..+........-++..+.+.++||||.......    
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999998865443221          122233333444444566789999999993221110    


Q ss_pred             ----------------------c-cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc
Q 029077           79 ----------------------R-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  135 (199)
Q Consensus        79 ----------------------~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~  135 (199)
                                            + ...=...+++++.++.+... ...+  =+..+.+....+++|-|..|.|.-.....
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~--Di~~mk~Ls~~vNvIPvIaKaD~lt~~el  160 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPL--DIEFMKRLSKRVNVIPVIAKADTLTPEEL  160 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HH--HHHHHHHHTTTSEEEEEESTGGGS-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHH--HHHHHHHhcccccEEeEEecccccCHHHH
Confidence                                  0 00012568999999876421 1111  12334445568899999999998653221


Q ss_pred             ----HHHHHHHHHcCCcEEEecc
Q 029077          136 ----AKQVTFHRKKNLQYYEISA  154 (199)
Q Consensus       136 ----~~~~~~~~~~~~~~~~~s~  154 (199)
                          ..........++.+|....
T Consensus       161 ~~~k~~i~~~l~~~~I~~f~f~~  183 (281)
T PF00735_consen  161 QAFKQRIREDLEENNIKIFDFPE  183 (281)
T ss_dssp             HHHHHHHHHHHHHTT--S-----
T ss_pred             HHHHHHHHHHHHHcCceeecccc
Confidence                2223445567776655433

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.14  E-value=8.7e-10  Score=83.51  Aligned_cols=101  Identities=10%  Similarity=0.012  Sum_probs=62.8

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH---
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---  137 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~---  137 (199)
                      .+.+.+.||+|...   .....+..+|.++++......   +++......+    .++|.++++||+|+........   
T Consensus       126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG---DDLQGIKAGL----MEIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc---HHHHHHHHHH----hhhccEEEEEcccccchhHHHHHHH
Confidence            57788999998542   112345667888777443322   3333333322    2677899999999975432111   


Q ss_pred             HH--HHH---H---HcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077          138 QV--TFH---R---KKNLQYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       138 ~~--~~~---~---~~~~~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      ..  .+.   .   .+..+++.+|+++|.|+++++.+|.+..
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            00  111   1   1224689999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.13  E-value=4e-10  Score=78.22  Aligned_cols=63  Identities=17%  Similarity=0.186  Sum_probs=42.2

Q ss_pred             EEEEEeCCCcccc----cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCC
Q 029077           63 RFYCWDTAGQEKF----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV  127 (199)
Q Consensus        63 ~~~l~D~~g~~~~----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~  127 (199)
                      .+.++|+||....    ......++..+|++|+|.++....+-.....+.......  ....++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence            4679999996432    234566779999999999998865544444444444433  34488888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.11  E-value=3e-09  Score=81.63  Aligned_cols=81  Identities=16%  Similarity=-0.029  Sum_probs=49.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeE--EEEecCc---------------EEEEEEEeCCCccccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCG---------------KIRFYCWDTAGQEKFG   76 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~l~D~~g~~~~~   76 (199)
                      ++|+++|.++||||||+|++......  .....+++..+.  .+.+.+.               ...+.+.|+||.....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~--v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAE--AANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCe--ecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            78999999999999999997755421  111122221111  1111111               1358999999964321


Q ss_pred             cc-------ccccccCCcEEEEEEeCC
Q 029077           77 GL-------RDGYYIHGQCAIIMFDVT   96 (199)
Q Consensus        77 ~~-------~~~~~~~~d~~i~v~d~~   96 (199)
                      ..       ....++.+|++++|+|+.
T Consensus        81 ~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            11       122367899999999984

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=6.9e-10  Score=85.24  Aligned_cols=136  Identities=21%  Similarity=0.267  Sum_probs=96.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc--C------CCCC------------ccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT--G------EFEK------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~--~------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (199)
                      ++-.-+||-.|.+|||||-..|+.  +      ....            +-....|++..+..+++++.+..+++.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            445678999999999999988763  1      1100            0112356777777888888899999999999


Q ss_pred             cccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcE
Q 029077           72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY  149 (199)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~  149 (199)
                      ++.|..-.--.+..+|.+++|+|+..+-.-+.     ..+.+.|  +++|++=++||.|...+...+..-++-+.+++..
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~  165 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQC  165 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcce
Confidence            99987766666788999999999976532222     2233333  5899999999999988766555555556666554


Q ss_pred             EEe
Q 029077          150 YEI  152 (199)
Q Consensus       150 ~~~  152 (199)
                      +++
T Consensus       166 ~Pi  168 (528)
T COG4108         166 API  168 (528)
T ss_pred             ecc
Confidence            443

>smart00053 DYNc Dynamin, GTPase

Probab=99.09  E-value=2.3e-09  Score=78.04  Aligned_cols=70  Identities=9%  Similarity=0.089  Sum_probs=43.7

Q ss_pred             EEEEEEeCCCcccc-------------ccccccccc-CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCC
Q 029077           62 IRFYCWDTAGQEKF-------------GGLRDGYYI-HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV  127 (199)
Q Consensus        62 ~~~~l~D~~g~~~~-------------~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~  127 (199)
                      ..+.++|+||....             ......|++ ..+.+++|+|+...-.-.........+..  ...++++|+||.
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~  202 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKL  202 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECC
Confidence            67889999997421             112344566 45688899988653222222233333332  378999999999


Q ss_pred             CCCCcc
Q 029077          128 DVKNRQ  133 (199)
Q Consensus       128 D~~~~~  133 (199)
                      |..+..
T Consensus       203 D~~~~~  208 (240)
T smart00053      203 DLMDEG  208 (240)
T ss_pred             CCCCcc
Confidence            987643

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.09  E-value=2.5e-10  Score=89.69  Aligned_cols=158  Identities=22%  Similarity=0.359  Sum_probs=118.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ..+.+|++|+|..++|||+|+.+++.+.|.....+.-|  .....+..+++...+.+.|.+|.     ....|....|++
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdav   99 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAV   99 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCC-----chhhhhhhccce
Confidence            35679999999999999999999999888766555443  44455566778888888888773     235667889999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC----ccccHHHH-HHHHHcCCcEEEeccCCCCChHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN----RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~----~~~~~~~~-~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      |+||...+..+|+.+......+..+.  ..+|+++++++.-...    .....+.. ..+....+.||++++.+|.++..
T Consensus       100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r  179 (749)
T KOG0705|consen  100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER  179 (749)
T ss_pred             EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence            99999999999998887776665442  4678888887654321    12222223 34445567899999999999999


Q ss_pred             HHHHHHHHHhCC
Q 029077          163 PFLYLARKLAGD  174 (199)
Q Consensus       163 ~~~~i~~~~~~~  174 (199)
                      +|+.++..+...
T Consensus       180 vf~~~~~k~i~~  191 (749)
T KOG0705|consen  180 VFQEVAQKIVQL  191 (749)
T ss_pred             HHHHHHHHHHHH
Confidence            999999877643

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.07  E-value=2.9e-09  Score=86.46  Aligned_cols=120  Identities=10%  Similarity=0.059  Sum_probs=69.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc------c----cc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------L----RD   80 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~----~~   80 (199)
                      .-.++|+++|.+|+||||++|.++............+++. ............+.++||||......      .    ..
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            4457999999999999999999886543222111122221 11111111346789999999654311      0    11


Q ss_pred             cccc--CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcC---CCcEEEEEeCCCCCC
Q 029077           81 GYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN  131 (199)
Q Consensus        81 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~p~iiv~~K~D~~~  131 (199)
                      .++.  ..|++|+|..++......+-..++..+...+.   -..+|||+|+.|...
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            1223  47999999887633222122234444444442   256788999998753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=2.1e-09  Score=82.79  Aligned_cols=156  Identities=15%  Similarity=0.058  Sum_probs=106.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCc-cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      .|+..|.---|||||++.+.+...... -....|++..-..+...-.+..+.++|.||++++-......+...|.+++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            578889999999999998665433211 1223454444444444445568999999999998887777788899999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH-HHHHH---HcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHR---KKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~-~~~~~---~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      +.++.-..+......  +.........++|.||.|..+.....+. .++..   ....+++.+|+.+|.|++++.+.|..
T Consensus        82 ~~deGl~~qtgEhL~--iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~  159 (447)
T COG3276          82 AADEGLMAQTGEHLL--ILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELID  159 (447)
T ss_pred             eCccCcchhhHHHHH--HHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHH
Confidence            998765444333211  1122234556899999999875432221 12222   33466899999999999999999998


Q ss_pred             HHh
Q 029077          170 KLA  172 (199)
Q Consensus       170 ~~~  172 (199)
                      ...
T Consensus       160 L~~  162 (447)
T COG3276         160 LLE  162 (447)
T ss_pred             hhh
Confidence            874

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.06  E-value=3.9e-10  Score=81.63  Aligned_cols=101  Identities=8%  Similarity=0.044  Sum_probs=59.8

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-  139 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-  139 (199)
                      .+.+.+++|.|--.   .-.....-+|.+++|....-....+.++.-+-++..       ++|+||.|........... 
T Consensus       121 G~D~IiiETVGvGQ---sE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD-------i~vVNKaD~~gA~~~~~~l~  190 (266)
T PF03308_consen  121 GFDVIIIETVGVGQ---SEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD-------IFVVNKADRPGADRTVRDLR  190 (266)
T ss_dssp             T-SEEEEEEESSST---HHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S-------EEEEE--SHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCc---cHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc-------EEEEeCCChHHHHHHHHHHH
Confidence            35555666654211   112234568999999988777766666655554433       6889999965433322221 


Q ss_pred             ---HHHHH----cCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077          140 ---TFHRK----KNLQYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       140 ---~~~~~----~~~~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                         .+...    +.-+++.+||.++.|++++++.|.+..
T Consensus       191 ~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  191 SMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             HHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence               22111    224799999999999999999988643

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=1.3e-09  Score=80.64  Aligned_cols=162  Identities=16%  Similarity=0.126  Sum_probs=103.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCcccc--ceeEE--------------------EeeEEEEe--cC---c-EE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVE--------------------VHPLDFFT--NC---G-KI   62 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~--~~~~~--------------------~~~~~~~~--~~---~-~~   62 (199)
                      .+.++|.++|...-|||||.+.|.+ -+......  ..|.+                    .+...-..  .+   . -.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsG-vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R   86 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSG-VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR   86 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhc-eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence            4679999999999999999998553 22110000  01111                    00000000  11   1 24


Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH----
Q 029077           63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----  138 (199)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~----  138 (199)
                      .+.+.|.||++-.-..+..-..-.|+.++|++++.+..--...+-+..+.- ..-..++++-||.|+..++...+.    
T Consensus        87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleI-igik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEI-IGIKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhh-hccceEEEEecccceecHHHHHHHHHHH
Confidence            678999999987655555555667999999999876433223332322222 234667888899999876544433    


Q ss_pred             HHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHhCC
Q 029077          139 VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       139 ~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~  174 (199)
                      .+|.+.   .+.+++.+||..+.|++-+++.|.+.+...
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP  204 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP  204 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence            344443   256899999999999999999999888643

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.05  E-value=3.2e-09  Score=78.12  Aligned_cols=102  Identities=10%  Similarity=0.009  Sum_probs=63.8

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHH
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT  140 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~  140 (199)
                      .+.+.++.|.|--...   .....-+|.++++.-..-+...+-++.-+-++..       |+|+||.|....+.......
T Consensus       143 G~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD-------i~vINKaD~~~A~~a~r~l~  212 (323)
T COG1703         143 GYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD-------IIVINKADRKGAEKAARELR  212 (323)
T ss_pred             CCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh-------eeeEeccChhhHHHHHHHHH
Confidence            4555666665532211   2233457888777766666666666655544443       68899999766433322221


Q ss_pred             H----H------HHcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          141 F----H------RKKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       141 ~----~------~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      +    .      ..+.-+++.+||..|+|+.++++.+.+...
T Consensus       213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            1    1      122346999999999999999999987654

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.04  E-value=1.9e-09  Score=81.76  Aligned_cols=115  Identities=14%  Similarity=0.143  Sum_probs=77.4

Q ss_pred             CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh-------HhcHHHHHHHHHhhc-----CCCcEEEEEeC
Q 029077           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT-------YKNVPTWHRDLCRVC-----ENIPIVLCGNK  126 (199)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~l~~~~-----~~~p~iiv~~K  126 (199)
                      .++..+.++|.+|+...+..|...|.+++++|+|+++++-.-       ...+.+-+..+...+     .+.++|++.||
T Consensus       192 ~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK  271 (354)
T KOG0082|consen  192 IKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNK  271 (354)
T ss_pred             eCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeec
Confidence            356888999999999888889999999999999999875321       122333333333322     57999999999


Q ss_pred             CCCCCcc-----------------ccHHHH--------HHHHH--cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          127 VDVKNRQ-----------------VKAKQV--------TFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       127 ~D~~~~~-----------------~~~~~~--------~~~~~--~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      .|+-++.                 ...+..        ++.+.  ..+-+..+.|.+-.+++.+|.++...+..
T Consensus       272 ~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~  345 (354)
T KOG0082|consen  272 KDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ  345 (354)
T ss_pred             HHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence            9973211                 111111        11111  13446677888889999999988887754

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.02  E-value=8e-09  Score=71.57  Aligned_cols=77  Identities=10%  Similarity=0.023  Sum_probs=48.4

Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc--HHHHHHHH--HcCCcEEEeccCCCCChHHH
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHR--KKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~--~~~~~~~~--~~~~~~~~~s~~~~~~v~~~  163 (199)
                      .-|+|+|++.++..-  .+..+.+     ...=++|+||.|+....-.  +...+.++  ....+++++|.++|.|++++
T Consensus       120 ~~v~VidvteGe~~P--~K~gP~i-----~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~  192 (202)
T COG0378         120 LRVVVIDVTEGEDIP--RKGGPGI-----FKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEW  192 (202)
T ss_pred             eEEEEEECCCCCCCc--ccCCCce-----eEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHH
Confidence            667888888764211  0001111     1133788999999764332  22223233  34578999999999999999


Q ss_pred             HHHHHHHH
Q 029077          164 FLYLARKL  171 (199)
Q Consensus       164 ~~~i~~~~  171 (199)
                      +.++....
T Consensus       193 ~~~i~~~~  200 (202)
T COG0378         193 LRFIEPQA  200 (202)
T ss_pred             HHHHHhhc
Confidence            99887654

>cd01855 YqeH YqeH

Probab=98.98  E-value=5.1e-09  Score=74.24  Aligned_cols=103  Identities=17%  Similarity=0.138  Sum_probs=69.5

Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH-HHHHH-----HHcCC-
Q 029077           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-----RKKNL-  147 (199)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~-~~~~~-----~~~~~-  147 (199)
                      +......+++.+|++++|+|+++...     .|...+.....+.|+++|+||+|+.......+ ...+.     +..+. 
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   98 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK   98 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence            46667778899999999999987542     12222222234789999999999865433222 22222     22332 


Q ss_pred             --cEEEeccCCCCChHHHHHHHHHHHhCCCCCceecC
Q 029077          148 --QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVES  182 (199)
Q Consensus       148 --~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~  182 (199)
                        .++.+||++|.|+++++..|.+.+.......+.-.
T Consensus        99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~  135 (190)
T cd01855          99 PKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGA  135 (190)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcC
Confidence              58999999999999999999988754444444433

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=1.9e-09  Score=86.64  Aligned_cols=116  Identities=17%  Similarity=0.197  Sum_probs=81.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCc---------cc------cceeEEEeeEEE-----EecCcEEEEEEEeCC
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YE------PTIGVEVHPLDF-----FTNCGKIRFYCWDTA   70 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~---------~~------~~~~~~~~~~~~-----~~~~~~~~~~l~D~~   70 (199)
                      ....+|+++|+-+.|||+|+.-|.....+.-         |.      ...|++.+....     ...++.+-+++.|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            3456899999999999999997664333211         11      112333222211     225677899999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 029077           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV  129 (199)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~  129 (199)
                      |+-.|-......++.+|++++++|+.++-.+..-.-....+.   .+.|+++|+||.|.
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---NRLPIVVVINKVDR  261 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh---ccCcEEEEEehhHH
Confidence            999998888889999999999999998766543222222222   38999999999995

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=3.7e-09  Score=85.94  Aligned_cols=159  Identities=22%  Similarity=0.227  Sum_probs=101.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeEEEeeEEE--------Eec----CcEEEEEEEeCCCcc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTIGVEVHPLDF--------FTN----CGKIRFYCWDTAGQE   73 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~--------~~~----~~~~~~~l~D~~g~~   73 (199)
                      +-+..-|||+|...+|||-|+..+-..+...    .....+|.++.+...        ..+    .+-..+.++||||++
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            4556679999999999999998755433221    112223434333321        001    122356889999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC-------Ccccc----------H
Q 029077           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-------NRQVK----------A  136 (199)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~-------~~~~~----------~  136 (199)
                      .|..++......||.+|+|+|+..+-.-+. ..-++.++.  ++.|+|+..||+|.-       +..+.          .
T Consensus       552 sFtnlRsrgsslC~~aIlvvdImhGlepqt-iESi~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~  628 (1064)
T KOG1144|consen  552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQT-IESINLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ  628 (1064)
T ss_pred             hhhhhhhccccccceEEEEeehhccCCcch-hHHHHHHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence            999999999999999999999986532222 223344444  489999999999951       11100          0


Q ss_pred             HH---------HHHHHH-cC-------------CcEEEeccCCCCChHHHHHHHHHHH
Q 029077          137 KQ---------VTFHRK-KN-------------LQYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       137 ~~---------~~~~~~-~~-------------~~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      ..         .+|+.. ++             +..+++||.+|+|+.+++.+|++..
T Consensus       629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt  686 (1064)
T KOG1144|consen  629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT  686 (1064)
T ss_pred             HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence            00         012111 11             2467799999999999988887644

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.96  E-value=4.3e-09  Score=78.08  Aligned_cols=156  Identities=17%  Similarity=0.164  Sum_probs=96.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCC--ccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--cccccccc----
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGY----   82 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~----   82 (199)
                      ...--|.++|..+||||||++.|......+  ....|...+.......   ..-.+.+.||.|--.  -..+..+|    
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp---sg~~vlltDTvGFisdLP~~LvaAF~ATL  252 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP---SGNFVLLTDTVGFISDLPIQLVAAFQATL  252 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC---CCcEEEEeechhhhhhCcHHHHHHHHHHH
Confidence            444578999999999999999977433322  2333443333333332   234667789988321  11111221    


Q ss_pred             --ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCc----EEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccC
Q 029077           83 --YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIP----IVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK  155 (199)
Q Consensus        83 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p----~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~  155 (199)
                        ...+|.++.|.|++.+..-+.......-+.+.- +..|    ++=|-||.|.+......+.      .  ..+.+|++
T Consensus       253 eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~------n--~~v~isal  324 (410)
T KOG0410|consen  253 EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEK------N--LDVGISAL  324 (410)
T ss_pred             HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcccc------C--Cccccccc
Confidence              457999999999999876554444444444431 1222    3455688887765443321      1  15678999


Q ss_pred             CCCChHHHHHHHHHHHhCCCCC
Q 029077          156 SNYNFEKPFLYLARKLAGDPNL  177 (199)
Q Consensus       156 ~~~~v~~~~~~i~~~~~~~~~~  177 (199)
                      +|.|++++.+.+-.++......
T Consensus       325 tgdgl~el~~a~~~kv~~~t~~  346 (410)
T KOG0410|consen  325 TGDGLEELLKAEETKVASETTV  346 (410)
T ss_pred             cCccHHHHHHHHHHHhhhhhee
Confidence            9999999999888777654443

>PRK12289 GTPase RsgA; Reviewed

Probab=98.96  E-value=5e-09  Score=80.59  Aligned_cols=92  Identities=16%  Similarity=0.136  Sum_probs=68.2

Q ss_pred             ccccccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccC
Q 029077           77 GLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK  155 (199)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~  155 (199)
                      .+.+..+.++|.+++|+|+.++. +...+..|+.....  .++|+++|+||+|+.+..............++.++.+|+.
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~  158 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVE  158 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcC
Confidence            44455688999999999998765 34455666665533  4899999999999975432233344556778899999999


Q ss_pred             CCCChHHHHHHHHHH
Q 029077          156 SNYNFEKPFLYLARK  170 (199)
Q Consensus       156 ~~~~v~~~~~~i~~~  170 (199)
                      +|.|+++++..+...
T Consensus       159 tg~GI~eL~~~L~~k  173 (352)
T PRK12289        159 TGIGLEALLEQLRNK  173 (352)
T ss_pred             CCCCHHHHhhhhccc
Confidence            999999988877643

>cd01859 MJ1464 MJ1464

Probab=98.96  E-value=3.8e-09  Score=72.47  Aligned_cols=94  Identities=12%  Similarity=0.049  Sum_probs=64.1

Q ss_pred             ccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCC
Q 029077           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS  156 (199)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~  156 (199)
                      ...+...+++|++++|+|++++...... .+...+..  .++|+++|+||+|+.+.........+....+.+++.+|+++
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~   80 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE   80 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence            3455667789999999999876433321 22222221  37899999999998643222222233344567899999999


Q ss_pred             CCChHHHHHHHHHHHhC
Q 029077          157 NYNFEKPFLYLARKLAG  173 (199)
Q Consensus       157 ~~~v~~~~~~i~~~~~~  173 (199)
                      +.|++++++.+.+.+..
T Consensus        81 ~~gi~~L~~~l~~~~~~   97 (156)
T cd01859          81 RLGTKILRRTIKELAKI   97 (156)
T ss_pred             cccHHHHHHHHHHHHhh
Confidence            99999999999887653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.95  E-value=6.8e-09  Score=77.20  Aligned_cols=54  Identities=20%  Similarity=0.185  Sum_probs=38.5

Q ss_pred             CCcEEEEEeCCCCCCcc--ccHHHHHHHHH--cCCcEEEeccCCCCChHHHHHHHHHH
Q 029077          117 NIPIVLCGNKVDVKNRQ--VKAKQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus       117 ~~p~iiv~~K~D~~~~~--~~~~~~~~~~~--~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      ...-++|+||+|+....  ......+..+.  ...+++.+|+++|.|++++.++|...
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            45668999999997532  12222232322  35779999999999999999999764

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.94  E-value=4.7e-09  Score=78.98  Aligned_cols=88  Identities=11%  Similarity=0.074  Sum_probs=68.3

Q ss_pred             cccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCC
Q 029077           80 DGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY  158 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      +..+.++|.+++|+|+.++. ++..+..|+..+...  ++|+++|+||+|+.+..............+.+++.+|++++.
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~  150 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGE  150 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence            44588999999999999887 777788888766553  799999999999975422222234445578899999999999


Q ss_pred             ChHHHHHHHHH
Q 029077          159 NFEKPFLYLAR  169 (199)
Q Consensus       159 ~v~~~~~~i~~  169 (199)
                      |+++++..+..
T Consensus       151 gi~~L~~~L~~  161 (287)
T cd01854         151 GLDELREYLKG  161 (287)
T ss_pred             cHHHHHhhhcc
Confidence            99998877653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=1.6e-08  Score=72.29  Aligned_cols=156  Identities=18%  Similarity=0.203  Sum_probs=93.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEee--EEEEecCcEEEEEEEeCCCcccc-ccc--ccccccCCc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKF-GGL--RDGYYIHGQ   87 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~-~~~--~~~~~~~~d   87 (199)
                      +-+|+++|...|||||+.+- +.....+.-  |.-.+...  ..-.+.+.-+.+.+||+||+-.+ ...  ....++.+.
T Consensus        27 kp~ilLMG~rRsGKsSI~KV-VFhkMsPne--TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g  103 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKV-VFHKMSPNE--TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG  103 (347)
T ss_pred             CceEEEEeecccCcchhhhe-eeeccCCCc--eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence            35699999999999999886 444433322  32222111  11123345578999999998653 222  255689999


Q ss_pred             EEEEEEeCCCh--hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH--------HH-HHH----HHcCCcEEEe
Q 029077           88 CAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--------QV-TFH----RKKNLQYYEI  152 (199)
Q Consensus        88 ~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~--------~~-~~~----~~~~~~~~~~  152 (199)
                      ++|+|+|+.+.  +...++.....+.....+++.+=++..|.|.-......+        .. +++    ....+.++.+
T Consensus       104 ALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT  183 (347)
T KOG3887|consen  104 ALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT  183 (347)
T ss_pred             eEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence            99999999764  223333333333334457788888999999654221111        01 111    1123457777


Q ss_pred             ccCCCCChHHHHHHHHHHHh
Q 029077          153 SAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~  172 (199)
                      |..+. .+-|.|..+.+.+.
T Consensus       184 SIyDH-SIfEAFSkvVQkLi  202 (347)
T KOG3887|consen  184 SIYDH-SIFEAFSKVVQKLI  202 (347)
T ss_pred             eecch-HHHHHHHHHHHHHh
Confidence            77764 56677777776665

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.86  E-value=6.6e-09  Score=70.07  Aligned_cols=54  Identities=19%  Similarity=0.207  Sum_probs=38.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (199)
                      +++++|.+|+|||||+|++...... ......|.+.....+.++.   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            8999999999999999998765443 3333455555544444433   5789999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.86  E-value=3.1e-08  Score=74.12  Aligned_cols=176  Identities=17%  Similarity=0.121  Sum_probs=112.9

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhc---C-------CCC----CccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLT---G-------EFE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~---~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (199)
                      .-+.++++|.-||...-|||||-..+..   .       .|.    ..-....|++.....+.++.....+.-.|+||+.
T Consensus        49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA  128 (449)
T KOG0460|consen   49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA  128 (449)
T ss_pred             ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence            4467889999999999999999865431   0       111    1112245677776666777667778889999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc-----cHHHHHHHHHcCC-
Q 029077           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-----KAKQVTFHRKKNL-  147 (199)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-----~~~~~~~~~~~~~-  147 (199)
                      .|-.+...-..+.|+.|+|+.++|..--+.-..  -.+.+...-..++++.||.|+.+...     ..+..++...+++ 
T Consensus       129 DYIKNMItGaaqMDGaILVVaatDG~MPQTrEH--lLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~  206 (449)
T KOG0460|consen  129 DYIKNMITGAAQMDGAILVVAATDGPMPQTREH--LLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD  206 (449)
T ss_pred             HHHHHhhcCccccCceEEEEEcCCCCCcchHHH--HHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence            998888888889999999999999864333222  22333333345677789999985332     2344567777764 


Q ss_pred             ----cEEEecc---CCCCC-------hHHHHHHHHHHHhCCCCCceecCCCCCC
Q 029077          148 ----QYYEISA---KSNYN-------FEKPFLYLARKLAGDPNLHFVESPALAP  187 (199)
Q Consensus       148 ----~~~~~s~---~~~~~-------v~~~~~~i~~~~~~~~~~~~~~~p~~~~  187 (199)
                          +++.-||   +.|.+       +.++++.+-+.+....+.  ++.|+..+
T Consensus       207 Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~--~~~pFl~p  258 (449)
T KOG0460|consen  207 GDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERD--LDKPFLLP  258 (449)
T ss_pred             CCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccc--cCCCceee
Confidence                5777555   45533       333444443334333332  55666554

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.86  E-value=1.1e-09  Score=78.01  Aligned_cols=43  Identities=21%  Similarity=0.374  Sum_probs=36.5

Q ss_pred             cEEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          148 QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       148 ~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .+..++.++|..-+.  ..|++++.++|++.+.|||...     +|+...
T Consensus       141 A~qra~~LSGGQQQR--VaIARaL~Q~pkiILADEPvas-----LDp~~a  183 (258)
T COG3638         141 AYQRASTLSGGQQQR--VAIARALVQQPKIILADEPVAS-----LDPESA  183 (258)
T ss_pred             HHHHhccCCcchhHH--HHHHHHHhcCCCEEecCCcccc-----cChhhH
Confidence            367788888876555  6799999999999999999999     998764

>PRK00098 GTPase RsgA; Reviewed

Probab=98.85  E-value=1.4e-08  Score=76.80  Aligned_cols=85  Identities=15%  Similarity=0.137  Sum_probs=63.8

Q ss_pred             cccCCcEEEEEEeCCChhhHhc-HHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCC
Q 029077           82 YYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYN  159 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      .+.++|.+++|+|++++..+.. +..|+..+..  .++|+++|+||+|+.+. ....+.....+..+++++++|++++.|
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g  154 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG  154 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            4589999999999988765443 4567666544  48999999999999632 222233455666788999999999999


Q ss_pred             hHHHHHHHH
Q 029077          160 FEKPFLYLA  168 (199)
Q Consensus       160 v~~~~~~i~  168 (199)
                      +++++..+.
T Consensus       155 i~~L~~~l~  163 (298)
T PRK00098        155 LDELKPLLA  163 (298)
T ss_pred             HHHHHhhcc
Confidence            999887664

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.85  E-value=1.2e-08  Score=71.86  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=30.8

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA  196 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~  196 (199)
                      +.++|.  ++...+|++++.=+|++.++|||+++     ||++.
T Consensus       135 ~qLSGG--QqQRVAIARALaM~P~vmLFDEPTSA-----LDPEl  171 (240)
T COG1126         135 AQLSGG--QQQRVAIARALAMDPKVMLFDEPTSA-----LDPEL  171 (240)
T ss_pred             cccCcH--HHHHHHHHHHHcCCCCEEeecCCccc-----CCHHH
Confidence            556655  44557899999999999999999999     99864

>cd01858 NGP_1 NGP-1

Probab=98.83  E-value=1.6e-08  Score=69.47  Aligned_cols=56  Identities=18%  Similarity=0.169  Sum_probs=38.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (199)
                      ..++|+++|.+|+|||||+|+|.... .....++.|.+.....+..+.   .+.+.||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            46789999999999999999976543 233344556555544443322   367899998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01900 YchF YchF subfamily

Probab=98.83  E-value=6.5e-09  Score=77.20  Aligned_cols=79  Identities=16%  Similarity=-0.022  Sum_probs=47.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeE--EEEecCc---------------EEEEEEEeCCCcccccc-
Q 029077           16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCG---------------KIRFYCWDTAGQEKFGG-   77 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~l~D~~g~~~~~~-   77 (199)
                      |+++|.++||||||+|++........  ...+++..+.  .+.+.+.               ...+.++|+||.....+ 
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~--n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAA--NYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccc--cccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            58999999999999999776544211  1122221111  1111111               23589999999643211 


Q ss_pred             ---c---ccccccCCcEEEEEEeCC
Q 029077           78 ---L---RDGYYIHGQCAIIMFDVT   96 (199)
Q Consensus        78 ---~---~~~~~~~~d~~i~v~d~~   96 (199)
                         +   ....++++|++++|+|+.
T Consensus        79 ~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          79 GEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence               1   122357899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.82  E-value=2e-07  Score=70.61  Aligned_cols=138  Identities=17%  Similarity=0.298  Sum_probs=83.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCc----------cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc-
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-   79 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-   79 (199)
                      .-.++|+++|++|+|||||+|.|++......          ..++.........+.-++....++++||||-..+-... 
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            5678999999999999999999886533222          22334344455555556667889999999933221110 


Q ss_pred             -------------ccc------------c--cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077           80 -------------DGY------------Y--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (199)
Q Consensus        80 -------------~~~------------~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~  132 (199)
                                   ..|            +  ...+++++.+..+.. .+..+.  +..+.+.+..+-+|-|+.|.|.-..
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~D--Ie~Mk~ls~~vNlIPVI~KaD~lT~  177 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLD--IEAMKRLSKRVNLIPVIAKADTLTD  177 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHH--HHHHHHHhcccCeeeeeeccccCCH
Confidence                         001            1  145777777765532 222222  2223344457788888899997542


Q ss_pred             c----ccHHHHHHHHHcCCcEEE
Q 029077          133 Q----VKAKQVTFHRKKNLQYYE  151 (199)
Q Consensus       133 ~----~~~~~~~~~~~~~~~~~~  151 (199)
                      .    ......+.....++++|.
T Consensus       178 ~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         178 DELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             HHHHHHHHHHHHHHHHhCCceeC
Confidence            2    222334566667777775

>PRK12288 GTPase RsgA; Reviewed

Probab=98.81  E-value=3.3e-08  Score=76.06  Aligned_cols=87  Identities=14%  Similarity=0.111  Sum_probs=68.1

Q ss_pred             cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc---cHHHHHHHHHcCCcEEEeccCCCC
Q 029077           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSNY  158 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      ...|+|.+++|++.....++..+..|+.....  .++|.++|+||+|+.+...   ..+........+.+++++|+.++.
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            35789999999999888888888898775543  4789999999999975332   222334455678899999999999


Q ss_pred             ChHHHHHHHHHH
Q 029077          159 NFEKPFLYLARK  170 (199)
Q Consensus       159 ~v~~~~~~i~~~  170 (199)
                      |+++++..|...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999888653

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.80  E-value=2e-08  Score=69.84  Aligned_cols=56  Identities=18%  Similarity=0.213  Sum_probs=40.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (199)
                      ..++++++|.+|+|||||+|++..... ....+..|++.....+..+   ..+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~~~~~~~---~~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSMQEVHLD---KKVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcceEEEEeC---CCEEEEECcC
Confidence            458999999999999999999775433 3344556666655554433   2578999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=3.7e-07  Score=69.55  Aligned_cols=142  Identities=15%  Similarity=0.272  Sum_probs=84.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCc---------cccceeEEEeeEEEEecCcEEEEEEEeCCCcccc-------
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------   75 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------   75 (199)
                      -.+.+.++|++|.|||||+|.|+.....+.         ...+...........-++..+.+++.||||-...       
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            359999999999999999999876544322         2223344444455555666788999999993221       


Q ss_pred             ccc------------------cccccc--CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc
Q 029077           76 GGL------------------RDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  135 (199)
Q Consensus        76 ~~~------------------~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~  135 (199)
                      +..                  .+..+.  ..+++++.+..+-. .+..+.  +..+......+.+|-|..|.|.......
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~KaD~lT~~El  176 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIAKADTLTKDEL  176 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceeeccccCCHHHH
Confidence            110                  011122  46777777775532 122211  1223333457888888899998653222


Q ss_pred             ----HHHHHHHHHcCCcEEEeccCC
Q 029077          136 ----AKQVTFHRKKNLQYYEISAKS  156 (199)
Q Consensus       136 ----~~~~~~~~~~~~~~~~~s~~~  156 (199)
                          ....+.....++.+|......
T Consensus       177 ~~~K~~I~~~i~~~nI~vf~fp~~~  201 (366)
T KOG2655|consen  177 NQFKKRIRQDIEEHNIKVFDFPTDE  201 (366)
T ss_pred             HHHHHHHHHHHHHcCcceecCCCCc
Confidence                223455666777766655543

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=4e-07  Score=69.36  Aligned_cols=83  Identities=24%  Similarity=0.157  Sum_probs=51.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-c----cceeEEEeeEEEE-------ec----CcEEEEEEEeCCCccc-
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-KKY-E----PTIGVEVHPLDFF-------TN----CGKIRFYCWDTAGQEK-   74 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~-~~~-~----~~~~~~~~~~~~~-------~~----~~~~~~~l~D~~g~~~-   74 (199)
                      .++++++|.|++|||||+|.+...... ..| .    |-.|...-+. ..       ..    .....+.++|.+|.-. 
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d-~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G   80 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPD-CRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG   80 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCc-hHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence            478999999999999999997754432 111 1    1122211111 00       01    1235789999998533 


Q ss_pred             ---ccc---cccccccCCcEEEEEEeCC
Q 029077           75 ---FGG---LRDGYYIHGQCAIIMFDVT   96 (199)
Q Consensus        75 ---~~~---~~~~~~~~~d~~i~v~d~~   96 (199)
                         .+.   .....++.+|+++.|+++.
T Consensus        81 As~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          81 ASKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             cccCCCcchHHHHhhhhcCeEEEEEEec
Confidence               222   2334478999999999976

>cd01855 YqeH YqeH

Probab=98.73  E-value=2.5e-08  Score=70.67  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=41.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCC-------CccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (199)
                      ..+++++|.+|+|||||+|.|......       .......|++.....+.++.   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            468999999999999999998764321       12334456777776666543   478999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01856 YlqF YlqF

Probab=98.73  E-value=4.5e-08  Score=68.22  Aligned_cols=58  Identities=22%  Similarity=0.212  Sum_probs=41.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (199)
                      ...++++++|.+|+|||||+|++....+. ...+..+++.....+.++   ..+.++||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            44579999999999999999998765543 333444555554444443   45789999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.73  E-value=4.7e-08  Score=70.49  Aligned_cols=37  Identities=27%  Similarity=0.276  Sum_probs=29.2

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA  195 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~  195 (199)
                      ...++|.  ......|++++...|+++++|||+.+     +|-.
T Consensus       128 P~qLSGG--MrQRVaiARAL~~~P~lLLlDEPFgA-----LDal  164 (248)
T COG1116         128 PHQLSGG--MRQRVAIARALATRPKLLLLDEPFGA-----LDAL  164 (248)
T ss_pred             ccccChH--HHHHHHHHHHHhcCCCEEEEcCCcch-----hhHH
Confidence            3455543  33467899999999999999999999     8854

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.72  E-value=5.3e-08  Score=75.62  Aligned_cols=94  Identities=18%  Similarity=0.219  Sum_probs=69.0

Q ss_pred             cccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH-HHH----HHHHHcC
Q 029077           72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV----TFHRKKN  146 (199)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~-~~~----~~~~~~~  146 (199)
                      .+.+......+...++++++|+|+.+..     ..|...+.+...+.|+++|+||+|+....... +..    ++++..+
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g  124 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELG  124 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcC
Confidence            3456667777788999999999987643     33555555555688999999999986543322 212    3456666


Q ss_pred             C---cEEEeccCCCCChHHHHHHHHHH
Q 029077          147 L---QYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus       147 ~---~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      +   .++.+||++|.|+++++..|.+.
T Consensus       125 ~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       125 LKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             CCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            6   48999999999999999998764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.70  E-value=1.1e-06  Score=63.44  Aligned_cols=89  Identities=10%  Similarity=0.038  Sum_probs=60.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc-------cccccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYY   83 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~   83 (199)
                      +..-||+++|-|.+|||||+..+....  .+......++...+...+......+++.|.||.-..       ........
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavA  137 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVA  137 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEe
Confidence            456799999999999999999755222  222223334455555555666778899999984321       11224456


Q ss_pred             cCCcEEEEEEeCCChhhH
Q 029077           84 IHGQCAIIMFDVTARLTY  101 (199)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~  101 (199)
                      +.+|.+++|.|++..+.-
T Consensus       138 rtaDlilMvLDatk~e~q  155 (364)
T KOG1486|consen  138 RTADLILMVLDATKSEDQ  155 (364)
T ss_pred             ecccEEEEEecCCcchhH
Confidence            889999999999976543

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.70  E-value=1.2e-07  Score=68.11  Aligned_cols=52  Identities=17%  Similarity=0.204  Sum_probs=37.1

Q ss_pred             HHHHHHcCCc----EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          139 VTFHRKKNLQ----YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       139 ~~~~~~~~~~----~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ..+.+..++.    ....+.++|.  ++-..+|++++..+|.+.+.|||+.+     +|....
T Consensus       123 ~~l~~~lgl~~~~~~~~p~eLSGG--qqQRVAIARAL~~~P~iilADEPTgn-----LD~~t~  178 (226)
T COG1136         123 EELLEVLGLEDRLLKKKPSELSGG--QQQRVAIARALINNPKIILADEPTGN-----LDSKTA  178 (226)
T ss_pred             HHHHHhcCChhhhccCCchhcCHH--HHHHHHHHHHHhcCCCeEEeeCcccc-----CChHHH
Confidence            3444444443    1335666654  45567899999999999999999999     887653

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.69  E-value=2.1e-07  Score=70.33  Aligned_cols=52  Identities=19%  Similarity=0.254  Sum_probs=36.8

Q ss_pred             HHHHHcCCcE---EEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          140 TFHRKKNLQY---YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       140 ~~~~~~~~~~---~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ++....++.-   -.+...++..-+.  -.|+.++..+|.++++|||+.+     +|+...+
T Consensus       119 ~~l~~~~L~~~~~~~~~~lS~G~kqr--l~ia~aL~~~P~lliLDEPt~G-----LDp~~~~  173 (293)
T COG1131         119 ELLELFGLEDKANKKVRTLSGGMKQR--LSIALALLHDPELLILDEPTSG-----LDPESRR  173 (293)
T ss_pred             HHHHHcCCchhhCcchhhcCHHHHHH--HHHHHHHhcCCCEEEECCCCcC-----CCHHHHH
Confidence            4455555542   3345555544444  4599999999999999999999     9987653

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=2.9e-08  Score=75.74  Aligned_cols=157  Identities=18%  Similarity=0.146  Sum_probs=105.0

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcC--------------------C--CC-------CccccceeEEEeeEEEEecC
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG--------------------E--FE-------KKYEPTIGVEVHPLDFFTNC   59 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~--------------------~--~~-------~~~~~~~~~~~~~~~~~~~~   59 (199)
                      .+..++++.++|.-.+||||+-..++..                    +  +.       ..-.+..|.+...-...++.
T Consensus        75 ~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt  154 (501)
T KOG0459|consen   75 YPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET  154 (501)
T ss_pred             CCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe
Confidence            3477899999999999999987664420                    0  00       00111223344444444555


Q ss_pred             cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hHhcH--HHHHHHHHhhcCCCcEEEEEeCCCCCCcc-
Q 029077           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-  133 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~--~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-  133 (199)
                      ..-.+++.|+||+..|......-..++|..++|.++.-.+   .|+..  ..-+..+.....-..+|+++||+|.+... 
T Consensus       155 e~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW  234 (501)
T KOG0459|consen  155 ENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW  234 (501)
T ss_pred             cceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence            6678999999999999999888899999999999986543   23332  12344555555667889999999986421 


Q ss_pred             -------ccHHHHHHHHHcC------CcEEEeccCCCCChHHHHH
Q 029077          134 -------VKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus       134 -------~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~~~  165 (199)
                             ...+...+.+..+      ..++++|..+|.++.+...
T Consensus       235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence                   2223334444433      3599999999999987554

>cd01859 MJ1464 MJ1464

Probab=98.68  E-value=8.7e-08  Score=65.71  Aligned_cols=56  Identities=20%  Similarity=0.215  Sum_probs=39.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (199)
                      ...+++++|.+|+|||||+|++.... .....++.|.+........+   ..+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTKGEQLVKIT---SKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcC---CCEEEEECcC
Confidence            45789999999999999999976433 34455666665443323222   2689999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.66  E-value=8e-08  Score=68.93  Aligned_cols=39  Identities=26%  Similarity=0.431  Sum_probs=32.6

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...+|...+.  -+|++++.-+|+++.+|||+.+     +|..-|.
T Consensus       140 ~eLSGGQ~QR--iaIARAL~~~PklLIlDEptSa-----LD~siQa  178 (252)
T COG1124         140 HELSGGQRQR--IAIARALIPEPKLLILDEPTSA-----LDVSVQA  178 (252)
T ss_pred             hhcChhHHHH--HHHHHHhccCCCEEEecCchhh-----hcHHHHH
Confidence            4466666655  6799999999999999999999     9987664

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.66  E-value=6.4e-08  Score=66.92  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=31.7

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.++|.  ++....|+++++.+|.+++.|||+-+     +|+...+
T Consensus       136 ~~LSGG--EQQRvaIARAiV~~P~vLlADEPTGN-----LDp~~s~  174 (223)
T COG2884         136 SQLSGG--EQQRVAIARAIVNQPAVLLADEPTGN-----LDPDLSW  174 (223)
T ss_pred             cccCch--HHHHHHHHHHHccCCCeEeecCCCCC-----CChHHHH
Confidence            455443  55668899999999999999999999     9887543

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.65  E-value=3.6e-08  Score=71.81  Aligned_cols=153  Identities=13%  Similarity=0.158  Sum_probs=86.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCcccc-ceeEEEeeEEEEecCcEEEEEEEeCCCc----------ccccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-TIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLR   79 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~   79 (199)
                      ..+.+++++|.+++|||+|+|.++.......... +.|.+ ...+..  ...-.+.+.|.||.          ..+....
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T-q~in~f--~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT-QAINHF--HVGKSWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc-eeeeee--eccceEEEEecCCcccccCCccCcchHhHhH
Confidence            4668999999999999999998764333222211 33322 112221  12346778899992          2234444


Q ss_pred             cccccCCcEEE---EEEeCCChhhHhcHHH-HHHHHHhhcCCCcEEEEEeCCCCCCccc------cHH-------HHHHH
Q 029077           80 DGYYIHGQCAI---IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQV------KAK-------QVTFH  142 (199)
Q Consensus        80 ~~~~~~~d~~i---~v~d~~~~~s~~~~~~-~~~~l~~~~~~~p~iiv~~K~D~~~~~~------~~~-------~~~~~  142 (199)
                      ..|+.+.+..+   +++|++-+  ++.... .++.+.+.  ++|..+|+||+|......      ...       ....+
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~  286 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV  286 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence            55554444333   44444422  222221 22223332  899999999999754221      111       11122


Q ss_pred             HHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077          143 RKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus       143 ~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      .....+.+.+|+.++.|+.+++-.|++.
T Consensus       287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~  314 (320)
T KOG2486|consen  287 FLVDLPWIYVSSVTSLGRDLLLLHIAQL  314 (320)
T ss_pred             eeccCCceeeecccccCceeeeeehhhh
Confidence            2334567789999999999987766654

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.63  E-value=1.2e-07  Score=71.11  Aligned_cols=58  Identities=22%  Similarity=0.180  Sum_probs=41.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (199)
                      ...++++++|.+|+|||||+|+|..... ....+..|++.....+..+.   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKV-AKVGNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            4568999999999999999999775432 22234556665554444432   4689999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.63  E-value=1.4e-07  Score=66.44  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA  196 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~  196 (199)
                      |+..=.|=++..-.|++++.-+|+++++|||+.+     ||+-+
T Consensus       146 sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSA-----LDPIs  184 (253)
T COG1117         146 SALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA-----LDPIS  184 (253)
T ss_pred             CccCCChhHHHHHHHHHHHhcCCcEEEecCcccc-----cCchh
Confidence            4443344455556799999999999999999999     88755

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.63  E-value=1.6e-07  Score=70.79  Aligned_cols=59  Identities=20%  Similarity=0.157  Sum_probs=42.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (199)
                      ...++++++|.+|+|||||+|+|..... ....+..|++.....+..+.   .+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKI-AKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCc-cccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            4568999999999999999999775443 23344566666654444332   47899999964

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.63  E-value=1.8e-07  Score=65.32  Aligned_cols=31  Identities=13%  Similarity=0.268  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .-.-.+++++..+|.+.++|||+.+     +|...+
T Consensus        77 ~qrv~laral~~~p~lllLDEPts~-----LD~~~~  107 (177)
T cd03222          77 LQRVAIAAALLRNATFYLFDEPSAY-----LDIEQR  107 (177)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCccc-----CCHHHH
Confidence            3445689999999999999999999     887764

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.62  E-value=1.1e-07  Score=72.62  Aligned_cols=59  Identities=24%  Similarity=0.248  Sum_probs=45.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (199)
                      ...++++|+|.+++|||||||+|.+... ....+..|+|.....+..+..   +.++||||.-
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence            4568999999999999999999775544 445556677777766665543   7899999953

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.60  E-value=2.8e-07  Score=74.58  Aligned_cols=54  Identities=19%  Similarity=0.239  Sum_probs=39.4

Q ss_pred             HHHHHHHcCCc----EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          138 QVTFHRKKNLQ----YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       138 ~~~~~~~~~~~----~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ....+...+++    .-.+..++|..-.  .-.+++.+.+.|+++++|||+.+     ||+.+.+
T Consensus       419 ~r~~L~~f~F~~~~~~~~v~~LSGGEk~--Rl~La~ll~~~pNvLiLDEPTNh-----LDi~s~~  476 (530)
T COG0488         419 VRAYLGRFGFTGEDQEKPVGVLSGGEKA--RLLLAKLLLQPPNLLLLDEPTNH-----LDIESLE  476 (530)
T ss_pred             HHHHHHHcCCChHHHhCchhhcCHhHHH--HHHHHHHhccCCCEEEEcCCCcc-----CCHHHHH
Confidence            34455555553    3446667665444  45599999999999999999999     9998754

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.60  E-value=9.7e-07  Score=64.04  Aligned_cols=39  Identities=28%  Similarity=0.312  Sum_probs=30.4

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...+|...  -.-.|++++..+|.++++|||+.+     +|....+
T Consensus       130 ~~LSgG~~--qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~  168 (220)
T cd03293         130 HQLSGGMR--QRVALARALAVDPDVLLLDEPFSA-----LDALTRE  168 (220)
T ss_pred             ccCCHHHH--HHHHHHHHHHcCCCEEEECCCCCC-----CCHHHHH
Confidence            34444433  446699999999999999999999     9987653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01856 YlqF YlqF

Probab=98.60  E-value=3e-07  Score=64.04  Aligned_cols=88  Identities=19%  Similarity=0.163  Sum_probs=60.9

Q ss_pred             ccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCC
Q 029077           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY  158 (199)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      ....+.++|.+++|+|++++...... .    +.....+.|.++|+||+|+.+........+..+..+..++.+|++++.
T Consensus        13 ~~~~i~~aD~il~v~D~~~~~~~~~~-~----i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~   87 (171)
T cd01856          13 IKEKLKLVDLVIEVRDARIPLSSRNP-L----LEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGK   87 (171)
T ss_pred             HHHHHhhCCEEEEEeeccCccCcCCh-h----hHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcc
Confidence            35567899999999999876443221 1    122224679999999999964322222223334445668999999999


Q ss_pred             ChHHHHHHHHHHH
Q 029077          159 NFEKPFLYLARKL  171 (199)
Q Consensus       159 ~v~~~~~~i~~~~  171 (199)
                      |++++...+...+
T Consensus        88 gi~~L~~~l~~~l  100 (171)
T cd01856          88 GVKKLLKAAKKLL  100 (171)
T ss_pred             cHHHHHHHHHHHH
Confidence            9999999988875

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.59  E-value=2.4e-07  Score=70.26  Aligned_cols=118  Identities=22%  Similarity=0.185  Sum_probs=75.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCc---cccceeEEEeeEEEE------ec------------------------
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFF------TN------------------------   58 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~------~~------------------------   58 (199)
                      .+-=|+++|.-..||||+++-|+...+++.   ..||.  ++....+.      +.                        
T Consensus        57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln  134 (532)
T KOG1954|consen   57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN  134 (532)
T ss_pred             cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence            344589999999999999999887666532   11221  11110000      00                        


Q ss_pred             --------Cc-EEEEEEEeCCCcc-----------cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCC
Q 029077           59 --------CG-KIRFYCWDTAGQE-----------KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI  118 (199)
Q Consensus        59 --------~~-~~~~~l~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~  118 (199)
                              +. --.+++.||||.-           .|....+.|+..+|.++++||+....--++....+..+...  .-
T Consensus       135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--Ed  212 (532)
T KOG1954|consen  135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--ED  212 (532)
T ss_pred             HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cc
Confidence                    11 1246799999932           23444577789999999999987655555666666666655  34


Q ss_pred             cEEEEEeCCCCCCcc
Q 029077          119 PIVLCGNKVDVKNRQ  133 (199)
Q Consensus       119 p~iiv~~K~D~~~~~  133 (199)
                      .+-+|.||.|..+.+
T Consensus       213 kiRVVLNKADqVdtq  227 (532)
T KOG1954|consen  213 KIRVVLNKADQVDTQ  227 (532)
T ss_pred             eeEEEeccccccCHH
Confidence            456778999987744

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.59  E-value=3.1e-07  Score=69.90  Aligned_cols=51  Identities=18%  Similarity=0.217  Sum_probs=36.8

Q ss_pred             HHHHHHcCCc---EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077          139 VTFHRKKNLQ---YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA  196 (199)
Q Consensus       139 ~~~~~~~~~~---~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~  196 (199)
                      .+.++..++.   --..+.++|..-+.  .+++++++.+|+..++|||..+     +|...
T Consensus       115 ~eva~~L~l~~lL~r~P~~LSGGQrQR--VAlaRAlVr~P~v~L~DEPlSn-----LDa~l  168 (338)
T COG3839         115 KEVAKLLGLEHLLNRKPLQLSGGQRQR--VALARALVRKPKVFLLDEPLSN-----LDAKL  168 (338)
T ss_pred             HHHHHHcCChhHHhcCcccCChhhHHH--HHHHHHHhcCCCEEEecCchhH-----hhHHH
Confidence            3445555543   12246677766555  6799999999999999999999     88653

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.58  E-value=5e-08  Score=69.98  Aligned_cols=47  Identities=23%  Similarity=0.216  Sum_probs=31.0

Q ss_pred             HHHHHHHcCCc---EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCC
Q 029077          138 QVTFHRKKNLQ---YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA  186 (199)
Q Consensus       138 ~~~~~~~~~~~---~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~  186 (199)
                      ...+....++.   .-....+.+...+.  -+|++++..+|+++++|||...
T Consensus       130 A~~~Le~vgL~~~a~~~A~~LsyG~qR~--LEIArALa~~P~lLLLDEPaAG  179 (250)
T COG0411         130 ARELLEFVGLGELADRPAGNLSYGQQRR--LEIARALATQPKLLLLDEPAAG  179 (250)
T ss_pred             HHHHHHHcCCchhhcchhhcCChhHhHH--HHHHHHHhcCCCEEEecCccCC
Confidence            34445444543   23334444433333  4599999999999999999998

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.58  E-value=1.9e-07  Score=75.55  Aligned_cols=52  Identities=21%  Similarity=0.203  Sum_probs=39.4

Q ss_pred             HHHHHHcCCcE--EEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          139 VTFHRKKNLQY--YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       139 ~~~~~~~~~~~--~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .......++.-  -.++.++|.  ..+...|++++..+|.++++|||+.+     ||..+.
T Consensus       136 ~~~L~gLg~~~~~~~~~~LSGG--~r~Rv~LA~aL~~~pDlLLLDEPTNH-----LD~~~i  189 (530)
T COG0488         136 EEALLGLGFPDEDRPVSSLSGG--WRRRVALARALLEEPDLLLLDEPTNH-----LDLESI  189 (530)
T ss_pred             HHHHhcCCCCcccCchhhcCHH--HHHHHHHHHHHhcCCCEEEEcCCCcc-----cCHHHH
Confidence            34555566653  355666554  55567799999999999999999999     998865

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.57  E-value=6.5e-06  Score=63.94  Aligned_cols=161  Identities=16%  Similarity=0.156  Sum_probs=93.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCC--------------CCccccceeE----------EEeeEEEEe-cCcEEEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGV----------EVHPLDFFT-NCGKIRFYC   66 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~--------------~~~~~~~~~~----------~~~~~~~~~-~~~~~~~~l   66 (199)
                      ..+=|+|+||..+|||||++||+..-.              +.-+.+..|.          ......+.+ ++-.+++.+
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            346789999999999999999875211              0011111121          122233344 355789999


Q ss_pred             EeCCCcc--------c---ccccc-ccc-----------------cc--CCcEEEEEEeCC----ChhhHhcHH-HHHHH
Q 029077           67 WDTAGQE--------K---FGGLR-DGY-----------------YI--HGQCAIIMFDVT----ARLTYKNVP-TWHRD  110 (199)
Q Consensus        67 ~D~~g~~--------~---~~~~~-~~~-----------------~~--~~d~~i~v~d~~----~~~s~~~~~-~~~~~  110 (199)
                      .||.|.-        .   -+-.. .+|                 +.  ..-++++.-|-+    .++++..+. +.+.+
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            9998721        0   00000 000                 11  112333332322    234444433 45666


Q ss_pred             HHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077          111 LCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       111 l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~  175 (199)
                      |...  ++|++++.|-.+-..........++..+++.+++.+++.. -.-+++..-|.+.|.+-|
T Consensus       176 Lk~i--gKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~-l~~~DI~~Il~~vLyEFP  237 (492)
T PF09547_consen  176 LKEI--GKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQ-LREEDITRILEEVLYEFP  237 (492)
T ss_pred             HHHh--CCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHH-cCHHHHHHHHHHHHhcCC
Confidence            6666  8999999998877766666666788888999998887753 234555555556666544

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.56  E-value=2.6e-07  Score=63.34  Aligned_cols=57  Identities=18%  Similarity=0.178  Sum_probs=38.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (199)
                      ....+++++|.+|+|||||+|.+...... ...+..+++.........   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~-~~~~~~~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKL-KVGNVPGTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccc-cccCCCCcccceEEEEec---CCEEEEECCC
Confidence            45688999999999999999997754321 122233444444444332   3588999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.55  E-value=7.9e-07  Score=60.90  Aligned_cols=83  Identities=16%  Similarity=0.124  Sum_probs=55.3

Q ss_pred             cEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      |++++|+|+.++.+....  ++........++|+++|+||+|+.......+.. .+.......++.+|+.+|.|++++.+
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~   78 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES   78 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence            688999999887654432  222111112479999999999996532222222 23333455689999999999999999


Q ss_pred             HHHHHH
Q 029077          166 YLARKL  171 (199)
Q Consensus       166 ~i~~~~  171 (199)
                      .+.+..
T Consensus        79 ~i~~~~   84 (155)
T cd01849          79 AFTKQT   84 (155)
T ss_pred             HHHHHh
Confidence            887653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.53  E-value=8.1e-07  Score=67.58  Aligned_cols=153  Identities=14%  Similarity=0.167  Sum_probs=91.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCC-----------------------ccccceeEEEeeEEEEe----------
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-----------------------KYEPTIGVEVHPLDFFT----------   57 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~-----------------------~~~~~~~~~~~~~~~~~----------   57 (199)
                      -..+|++++|.-.+|||||+--|..+..+.                       ......|.+.....+.+          
T Consensus       165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~  244 (591)
T KOG1143|consen  165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV  244 (591)
T ss_pred             ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence            346899999999999999997654432211                       11122333322222222          


Q ss_pred             cCcEEEEEEEeCCCccccccccccccc--CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc
Q 029077           58 NCGKIRFYCWDTAGQEKFGGLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  135 (199)
Q Consensus        58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~  135 (199)
                      +...--+.++|.+|+.+|.......+.  ..+...+|+++........ .+.+..+..  -++|+.++++|+|+.+++-.
T Consensus       245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A--L~iPfFvlvtK~Dl~~~~~~  321 (591)
T KOG1143|consen  245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA--LNIPFFVLVTKMDLVDRQGL  321 (591)
T ss_pred             hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH--hCCCeEEEEEeeccccchhH
Confidence            122345789999999887655433322  3577888888876654332 122222222  29999999999998764211


Q ss_pred             H--------------------------HH----HHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077          136 A--------------------------KQ----VTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus       136 ~--------------------------~~----~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      .                          +.    .+.+...-.++|.+|..+|+|++-+...
T Consensus       322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f  382 (591)
T KOG1143|consen  322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF  382 (591)
T ss_pred             HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence            1                          11    1223333457889999999998865543

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.53  E-value=4.5e-07  Score=61.12  Aligned_cols=76  Identities=12%  Similarity=0.177  Sum_probs=52.7

Q ss_pred             ccccCCcEEEEEEeCCChhhHh--cHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCC
Q 029077           81 GYYIHGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY  158 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      ..+..+|++++|+|++++.+..  .+..++...   ..++|+++|+||+|+.+.....+.....+..+..++++|+.++.
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~   83 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKEN   83 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCC
Confidence            3467899999999998876544  333443322   25789999999999965433333345555666789999998875


Q ss_pred             C
Q 029077          159 N  159 (199)
Q Consensus       159 ~  159 (199)
                      +
T Consensus        84 ~   84 (141)
T cd01857          84 A   84 (141)
T ss_pred             c
Confidence            3

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.52  E-value=2.6e-07  Score=70.29  Aligned_cols=40  Identities=28%  Similarity=0.431  Sum_probs=31.0

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +...++...+.  -.|++++..+|+++++|||+.+     +|+..+.
T Consensus       136 ~~~LS~G~~qr--l~la~aL~~~P~lllLDEPt~g-----LD~~~~~  175 (306)
T PRK13537        136 VGELSGGMKRR--LTLARALVNDPDVLVLDEPTTG-----LDPQARH  175 (306)
T ss_pred             hhhCCHHHHHH--HHHHHHHhCCCCEEEEeCCCcC-----CCHHHHH
Confidence            34455444444  5599999999999999999999     9988653

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.52  E-value=3.4e-06  Score=60.52  Aligned_cols=140  Identities=17%  Similarity=0.244  Sum_probs=74.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCC------c---cccceeEEEeeEEEEecCcEEEEEEEeCCCccccc-------
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK------K---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-------   76 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------   76 (199)
                      .++|.|+|.+|.|||||+|.++......      .   ...|...-.....+.-++...+++++||||-...-       
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            4799999999999999999977533211      1   11122222222233335556788999999933211       


Q ss_pred             c-------ccccc------------cc--CCcEEEEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCC---
Q 029077           77 G-------LRDGY------------YI--HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN---  131 (199)
Q Consensus        77 ~-------~~~~~------------~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~---  131 (199)
                      .       .+..|            +.  ..+++++.+..+- .++..+. .++..+.   .-+.++-|.-|.|.--   
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt---~vvNvvPVIakaDtlTleE  201 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT---EVVNVVPVIAKADTLTLEE  201 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh---hhheeeeeEeecccccHHH
Confidence            0       01111            22  3456666665543 3333222 2333332   2345666777999642   


Q ss_pred             cc-ccHHHHHHHHHcCCcEEEeccCC
Q 029077          132 RQ-VKAKQVTFHRKKNLQYYEISAKS  156 (199)
Q Consensus       132 ~~-~~~~~~~~~~~~~~~~~~~s~~~  156 (199)
                      +. ..+....-...+++.+|.-.+.+
T Consensus       202 r~~FkqrI~~el~~~~i~vYPq~~fd  227 (336)
T KOG1547|consen  202 RSAFKQRIRKELEKHGIDVYPQDSFD  227 (336)
T ss_pred             HHHHHHHHHHHHHhcCcccccccccc
Confidence            21 22223345566778777765544

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=5e-07  Score=74.03  Aligned_cols=115  Identities=17%  Similarity=0.173  Sum_probs=85.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCC--------------CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (199)
                      ....-+|+++-...-|||||+..|+..+-.              .+-..+.|++.+..-+....+++.++++|.||+-+|
T Consensus         6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf   85 (887)
T KOG0467|consen    6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF   85 (887)
T ss_pred             CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence            345568999999999999999998753220              112235667766666666667899999999999999


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCC
Q 029077           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD  128 (199)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D  128 (199)
                      .+......+-+|+++.++|+..+-.-+....    +++.. .+...++|.||+|
T Consensus        86 ~sevssas~l~d~alvlvdvvegv~~qt~~v----lrq~~~~~~~~~lvinkid  135 (887)
T KOG0467|consen   86 SSEVSSASRLSDGALVLVDVVEGVCSQTYAV----LRQAWIEGLKPILVINKID  135 (887)
T ss_pred             hhhhhhhhhhcCCcEEEEeeccccchhHHHH----HHHHHHccCceEEEEehhh
Confidence            9999999999999999999987654433222    22221 3667788899999

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.51  E-value=1.5e-06  Score=63.67  Aligned_cols=39  Identities=31%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...+|...+  .-.|++++..+|.++++|||+.+     +|...++
T Consensus       135 ~~LSgG~~q--rv~ia~al~~~p~llllDEPt~~-----LD~~~~~  173 (235)
T cd03261         135 AELSGGMKK--RVALARALALDPELLLYDEPTAG-----LDPIASG  173 (235)
T ss_pred             hhCCHHHHH--HHHHHHHHhcCCCEEEecCCccc-----CCHHHHH
Confidence            344444434  45699999999999999999999     9987653

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.51  E-value=7.9e-07  Score=63.00  Aligned_cols=39  Identities=21%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +..++..  ...-.|++++..+|.+.++|||+.+     +|...++
T Consensus       126 ~~LS~G~--~qrv~laral~~~p~llllDEPt~~-----LD~~~~~  164 (190)
T TIGR01166       126 HCLSGGE--KKRVAIAGAVAMRPDVLLLDEPTAG-----LDPAGRE  164 (190)
T ss_pred             hhCCHHH--HHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence            3444433  3446699999999999999999999     9987653

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.51  E-value=8.2e-07  Score=60.06  Aligned_cols=29  Identities=34%  Similarity=0.519  Sum_probs=24.2

Q ss_pred             HHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .-.|++++..+|.+..+|||+.+     +|....
T Consensus        78 rv~laral~~~p~illlDEP~~~-----LD~~~~  106 (144)
T cd03221          78 RLALAKLLLENPNLLLLDEPTNH-----LDLESI  106 (144)
T ss_pred             HHHHHHHHhcCCCEEEEeCCccC-----CCHHHH
Confidence            35589999999999999999999     887654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.51  E-value=7e-07  Score=66.37  Aligned_cols=40  Identities=23%  Similarity=0.323  Sum_probs=33.2

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      -+.++|.+-+.  ..|+++++.+|++++.||++.+     +|++..+
T Consensus       139 P~qLSGGQKQR--VaIARALa~~P~iLL~DEaTSA-----LDP~TT~  178 (339)
T COG1135         139 PAQLSGGQKQR--VAIARALANNPKILLCDEATSA-----LDPETTQ  178 (339)
T ss_pred             chhcCcchhhH--HHHHHHHhcCCCEEEecCcccc-----CChHHHH
Confidence            46677665554  6799999999999999999999     9998654

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=2.6e-07  Score=71.09  Aligned_cols=135  Identities=19%  Similarity=0.193  Sum_probs=99.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc--C------CCCC--------ccccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLT--G------EFEK--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~--~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (199)
                      .+.-+|+++..-.+||||.-.|++.  +      ....        ......|++..+.-+.++.+.++++++||||+-.
T Consensus        35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd  114 (753)
T KOG0464|consen   35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD  114 (753)
T ss_pred             hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence            4445899999999999999988663  1      1111        1123467788888888899999999999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCc
Q 029077           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ  148 (199)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~  148 (199)
                      |+-.....++--|+++.|||.+.+-.-+.+..|.+.-.   .++|-..+.||+|.............-++.+..
T Consensus       115 f~leverclrvldgavav~dasagve~qtltvwrqadk---~~ip~~~finkmdk~~anfe~avdsi~ekl~ak  185 (753)
T KOG0464|consen  115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK---FKIPAHCFINKMDKLAANFENAVDSIEEKLGAK  185 (753)
T ss_pred             EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccc---cCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCc
Confidence            99888889999999999999998766677777775432   278999999999986543332222333344443

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.50  E-value=1.8e-07  Score=71.49  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=33.6

Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077          147 LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA  196 (199)
Q Consensus       147 ~~~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~  196 (199)
                      ...-..+.++|.+-  ...+|+++++.+|.++++|||..+     +|...
T Consensus       129 ~~~R~p~qLSGGQq--QRVALARAL~~~P~vLLLDEPlSa-----LD~kL  171 (352)
T COG3842         129 FADRKPHQLSGGQQ--QRVALARALVPEPKVLLLDEPLSA-----LDAKL  171 (352)
T ss_pred             hhhhChhhhChHHH--HHHHHHHHhhcCcchhhhcCcccc-----hhHHH
Confidence            33445677766544  457899999999999999999999     88653

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.50  E-value=7.9e-07  Score=67.62  Aligned_cols=40  Identities=20%  Similarity=0.318  Sum_probs=31.2

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +...+|...+  .-.|++++..+|.++++|||+.+     +|+...+
T Consensus       122 ~~~LSgG~~q--rv~la~al~~~p~lllLDEPt~g-----LD~~~~~  161 (302)
T TIGR01188       122 VGTYSGGMRR--RLDIAASLIHQPDVLFLDEPTTG-----LDPRTRR  161 (302)
T ss_pred             hhhCCHHHHH--HHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHH
Confidence            3455554444  45699999999999999999999     9987653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd01858 NGP_1 NGP-1

Probab=98.49  E-value=8.5e-07  Score=60.88  Aligned_cols=89  Identities=12%  Similarity=0.073  Sum_probs=57.2

Q ss_pred             cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHH-HHcCCcEEEeccCCCCCh
Q 029077           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH-RKKNLQYYEISAKSNYNF  160 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~v  160 (199)
                      .+..+|.+++|+|++++.... ...+...+.....++|+++|.||+|+.+........... +......+.+|++.+.|+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~   83 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTR-CKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGK   83 (157)
T ss_pred             hhhhCCEEEEEEECCCCcccc-CHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccH
Confidence            357899999999998864221 112222222223358999999999996543222222222 222233577999999999


Q ss_pred             HHHHHHHHHHH
Q 029077          161 EKPFLYLARKL  171 (199)
Q Consensus       161 ~~~~~~i~~~~  171 (199)
                      +++.+.+...+
T Consensus        84 ~~L~~~l~~~~   94 (157)
T cd01858          84 GSLIQLLRQFS   94 (157)
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.49  E-value=2.1e-06  Score=61.63  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .-.-.|++++..+|+++++|||+.+     +|...++
T Consensus       140 ~qr~~laral~~~p~llllDEPt~~-----LD~~~~~  171 (206)
T TIGR03608       140 QQRVALARAILKDPPLILADEPTGS-----LDPKNRD  171 (206)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcCC-----CCHHHHH
Confidence            3445699999999999999999999     9987653

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.48  E-value=2.1e-06  Score=61.96  Aligned_cols=39  Identities=28%  Similarity=0.371  Sum_probs=30.3

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...+|...+  .-.|++++..+|.++++|||+.+     +|...++
T Consensus       129 ~~LSgG~~q--rl~la~al~~~p~~lllDEPt~~-----LD~~~~~  167 (213)
T cd03259         129 HELSGGQQQ--RVALARALAREPSLLLLDEPLSA-----LDAKLRE  167 (213)
T ss_pred             hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence            345544434  45599999999999999999999     9987653

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.48  E-value=1.4e-07  Score=78.68  Aligned_cols=37  Identities=24%  Similarity=0.301  Sum_probs=29.6

Q ss_pred             CCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       155 ~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+|.+-+  .-.|++++..+|+++.+|||+.+     +|...++
T Consensus       610 LSGGQrQ--rlalARaLl~~P~ILlLDEaTSa-----LD~~sE~  646 (709)
T COG2274         610 LSGGQRQ--RLALARALLSKPKILLLDEATSA-----LDPETEA  646 (709)
T ss_pred             CCHHHHH--HHHHHHHhccCCCEEEEeCcccc-----cCHhHHH
Confidence            3444334  45699999999999999999999     9987654

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=2.5e-06  Score=68.22  Aligned_cols=138  Identities=14%  Similarity=0.190  Sum_probs=80.9

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      ...++.+-++|+|++|+|||||+++|+.. +...   |..-...+ .....++...+++..+|.  ... .......-+|
T Consensus        64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr-~tk~---ti~~i~GP-iTvvsgK~RRiTflEcp~--Dl~-~miDvaKIaD  135 (1077)
T COG5192          64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRR-FTKQ---TIDEIRGP-ITVVSGKTRRITFLECPS--DLH-QMIDVAKIAD  135 (1077)
T ss_pred             ccCCCCeEEEeecCCCCChhHHHHHHHHH-HHHh---hhhccCCc-eEEeecceeEEEEEeChH--HHH-HHHhHHHhhh
Confidence            34477889999999999999999986632 2111   11100111 112345778899999883  222 2234457799


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccccHHHH-------HHHHH-cCCcEEEeccCC
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQV-------TFHRK-KNLQYYEISAKS  156 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~~~~~-------~~~~~-~~~~~~~~s~~~  156 (199)
                      .+++++|..-+-..+ ...+++.+...  ..| ++.|+|+.|+-.........       -|-.. .|+.+|..|...
T Consensus       136 LVlLlIdgnfGfEME-TmEFLnil~~H--GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         136 LVLLLIDGNFGFEME-TMEFLNILISH--GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             eeEEEeccccCceeh-HHHHHHHHhhc--CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            999999987542222 23344433332  555 67888999997644332211       11111 356777777653

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.47  E-value=5.8e-07  Score=61.14  Aligned_cols=33  Identities=24%  Similarity=0.237  Sum_probs=25.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA  196 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~  196 (199)
                      |=+.....|++.+.-.|.++++||++.+     +|...
T Consensus       136 GGE~QriAliR~Lq~~P~ILLLDE~TsA-----LD~~n  168 (223)
T COG4619         136 GGEKQRIALIRNLQFMPKILLLDEITSA-----LDESN  168 (223)
T ss_pred             chHHHHHHHHHHhhcCCceEEecCchhh-----cChhh
Confidence            3355567788888889999999999988     77654

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.47  E-value=5.3e-07  Score=63.46  Aligned_cols=31  Identities=32%  Similarity=0.524  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          163 PFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      -.-.|++++..+|+++++|||+.+     +|...++
T Consensus       111 qrl~la~al~~~p~llllDEP~~~-----LD~~~~~  141 (182)
T cd03215         111 QKVVLARWLARDPRVLILDEPTRG-----VDVGAKA  141 (182)
T ss_pred             HHHHHHHHHccCCCEEEECCCCcC-----CCHHHHH
Confidence            345699999999999999999999     9987653

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.47  E-value=2.7e-06  Score=62.24  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .-.-.|++++..+|.++++|||+.+     +|...++
T Consensus       139 ~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~  170 (232)
T cd03218         139 RRRVEIARALATNPKFLLLDEPFAG-----VDPIAVQ  170 (232)
T ss_pred             HHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHH
Confidence            3445699999999999999999999     9987653

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.47  E-value=2e-07  Score=63.59  Aligned_cols=58  Identities=26%  Similarity=0.275  Sum_probs=31.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC------ccccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEK------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (199)
                      -.++++|++|||||||+|.|+......      ....-..++.....+.+...   ..++||||...
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~   99 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRS   99 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCc
Confidence            478999999999999999987542211      11111223333333333222   25689998654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.47  E-value=1.5e-06  Score=63.02  Aligned_cols=39  Identities=23%  Similarity=0.353  Sum_probs=30.6

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...+|...+  .-.|++++..+|.++++|||+.+     +|...++
T Consensus       130 ~~LS~G~~q--r~~la~al~~~p~llllDEPt~~-----LD~~~~~  168 (220)
T cd03265         130 KTYSGGMRR--RLEIARSLVHRPEVLFLDEPTIG-----LDPQTRA  168 (220)
T ss_pred             hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCccC-----CCHHHHH
Confidence            445544433  45699999999999999999999     9987653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.46  E-value=1.2e-06  Score=65.81  Aligned_cols=89  Identities=18%  Similarity=0.204  Sum_probs=61.2

Q ss_pred             cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCC
Q 029077           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN  159 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      ...+..+|++++|+|+.++.+....  .+..   ...++|+++|.||+|+.+........+..+..+..++.+|+.++.|
T Consensus        16 ~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~---~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~g   90 (276)
T TIGR03596        16 KEKLKLVDVVIEVLDARIPLSSRNP--MIDE---IRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKG   90 (276)
T ss_pred             HHHHhhCCEEEEEEeCCCCCCCCCh--hHHH---HHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCccc
Confidence            4557899999999999876543321  1111   1237899999999999643222222233333456789999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 029077          160 FEKPFLYLARKLAG  173 (199)
Q Consensus       160 v~~~~~~i~~~~~~  173 (199)
                      ++++.+.+.+.+.+
T Consensus        91 i~~L~~~i~~~~~~  104 (276)
T TIGR03596        91 VKKIIKAAKKLLKE  104 (276)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888877643

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.46  E-value=5.4e-07  Score=62.25  Aligned_cols=36  Identities=25%  Similarity=0.282  Sum_probs=28.1

Q ss_pred             CCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       155 ~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .++...+  .-.+++++..+|.+.++|||+.+     +|....
T Consensus        83 LS~G~~q--rl~laral~~~p~illlDEP~~~-----LD~~~~  118 (163)
T cd03216          83 LSVGERQ--MVEIARALARNARLLILDEPTAA-----LTPAEV  118 (163)
T ss_pred             cCHHHHH--HHHHHHHHhcCCCEEEEECCCcC-----CCHHHH
Confidence            4444333  45599999999999999999999     887764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.46  E-value=2.3e-05  Score=52.99  Aligned_cols=58  Identities=29%  Similarity=0.310  Sum_probs=36.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCC
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTA   70 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~   70 (199)
                      ....+||.+.|++|+||||++.++....-...+  +.| -+....+.-+++-.-|.+.|+.
T Consensus         2 ~~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~--kvg-Gf~t~EVR~gGkR~GF~Ivdl~   59 (179)
T COG1618           2 IKMAMKIFITGRPGVGKTTLVLKIAEKLREKGY--KVG-GFITPEVREGGKRIGFKIVDLA   59 (179)
T ss_pred             CCcceEEEEeCCCCccHHHHHHHHHHHHHhcCc--eee-eEEeeeeecCCeEeeeEEEEcc
Confidence            356799999999999999999885522111111  111 2333344455666778888876

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.45  E-value=5.4e-07  Score=68.68  Aligned_cols=160  Identities=13%  Similarity=0.091  Sum_probs=93.6

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccce------------e--EEEeeEEEEe-----------------
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------------G--VEVHPLDFFT-----------------   57 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~------------~--~~~~~~~~~~-----------------   57 (199)
                      ..+.++.|++.|....|||||+-.|..+......-.+.            |  .+.+...+-+                 
T Consensus       113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~  192 (527)
T COG5258         113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK  192 (527)
T ss_pred             CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence            35778999999999999999998776655432111110            1  0111111111                 


Q ss_pred             ----cCcEEEEEEEeCCCcccccc-ccccc-ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           58 ----NCGKIRFYCWDTAGQEKFGG-LRDGY-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        58 ----~~~~~~~~l~D~~g~~~~~~-~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                          +..+-.+.+.|+.|++.|-. ..+.. -.+.|..++++.+++.-+-..-... .-..  .-..|++++.||+|+..
T Consensus       193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHL-gi~~--a~~lPviVvvTK~D~~~  269 (527)
T COG5258         193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHL-GIAL--AMELPVIVVVTKIDMVP  269 (527)
T ss_pred             hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhh-hhhh--hhcCCEEEEEEecccCc
Confidence                12234567899999987533 23333 4678999999999887542221111 1111  13899999999999865


Q ss_pred             cccc----HHHHHHHH----------------------H---cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          132 RQVK----AKQVTFHR----------------------K---KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       132 ~~~~----~~~~~~~~----------------------~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      ....    ++...+.+                      +   .-.|++.+|+.+|.|++-+.+ +...+.
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~Lp  338 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLLP  338 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhCC
Confidence            3221    11111111                      1   124799999999999875443 333333

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.45  E-value=2.1e-06  Score=63.50  Aligned_cols=38  Identities=24%  Similarity=0.248  Sum_probs=29.9

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ...++...+  .-.|++++..+|.++++|||+.+     +|....
T Consensus       143 ~~LS~Gq~q--rv~la~al~~~p~lllLDEPt~~-----LD~~~~  180 (250)
T PRK11264        143 RRLSGGQQQ--RVAIARALAMRPEVILFDEPTSA-----LDPELV  180 (250)
T ss_pred             hhCChHHHH--HHHHHHHHhcCCCEEEEeCCCcc-----CCHHHH
Confidence            445544444  45699999999999999999999     998764

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.45  E-value=3.3e-06  Score=61.95  Aligned_cols=32  Identities=25%  Similarity=0.469  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...-.|++++..+|.++++|||+.+     +|...++
T Consensus       138 ~qrl~laral~~~p~llllDEP~~~-----LD~~~~~  169 (236)
T TIGR03864       138 RRRVEIARALLHRPALLLLDEPTVG-----LDPASRA  169 (236)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHH
Confidence            3445699999999999999999999     9987653

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.45  E-value=2.5e-06  Score=65.87  Aligned_cols=39  Identities=33%  Similarity=0.368  Sum_probs=30.3

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++...  ..-.|++++..+|+++++|||+.+     +|+..+.
T Consensus       171 ~~LS~G~k--qrv~lA~aL~~~P~lLiLDEPt~g-----LD~~~r~  209 (340)
T PRK13536        171 SDLSGGMK--RRLTLARALINDPQLLILDEPTTG-----LDPHARH  209 (340)
T ss_pred             hhCCHHHH--HHHHHHHHHhcCCCEEEEECCCCC-----CCHHHHH
Confidence            34444333  345699999999999999999999     9988653

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.45  E-value=8.6e-07  Score=63.63  Aligned_cols=40  Identities=30%  Similarity=0.303  Sum_probs=31.7

Q ss_pred             EEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077          150 YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA  196 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~  196 (199)
                      ..-|.++|.=.+  ...+++++.-+|++.++|||+..     +|+-.
T Consensus       141 ~~PsELSGGM~K--RvaLARAialdPell~~DEPtsG-----LDPI~  180 (263)
T COG1127         141 LYPSELSGGMRK--RVALARAIALDPELLFLDEPTSG-----LDPIS  180 (263)
T ss_pred             hCchhhcchHHH--HHHHHHHHhcCCCEEEecCCCCC-----CCcch
Confidence            344777764334  47799999999999999999999     88754

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.45  E-value=2e-06  Score=62.17  Aligned_cols=33  Identities=21%  Similarity=0.363  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|...++
T Consensus       143 ~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~  175 (216)
T TIGR00960       143 EQQRVAIARAIVHKPPLLLADEPTGN-----LDPELSR  175 (216)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHH
Confidence            34456699999999999999999999     9987653

>PRK12288 GTPase RsgA; Reviewed

Probab=98.44  E-value=6.2e-07  Score=69.13  Aligned_cols=57  Identities=18%  Similarity=0.212  Sum_probs=34.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCC--cc----ccceeEEEeeEEEEecCcEEEEEEEeCCCcccc
Q 029077           16 LVIVGDGGTGKTTFVKRHLTGEFEK--KY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (199)
                      ++|+|.+|||||||+|+|+......  ..    .....++.....+.+....   .++||||...+
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~  270 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF  270 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence            7899999999999999987543211  11    1112233333333333222   48999996653

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.44  E-value=1.3e-06  Score=65.65  Aligned_cols=86  Identities=19%  Similarity=0.094  Sum_probs=55.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEe---------------cCcEEEEEEEeCCCcccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---------------NCGKIRFYCWDTAGQEKF   75 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~D~~g~~~~   75 (199)
                      .+.++++++|.+++|||||+|.+..........|...++-..-++.+               ......++++|++|.-..
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            57789999999999999999997765554443333222211112211               123467899999985432


Q ss_pred             ----ccc---ccccccCCcEEEEEEeCC
Q 029077           76 ----GGL---RDGYYIHGQCAIIMFDVT   96 (199)
Q Consensus        76 ----~~~---~~~~~~~~d~~i~v~d~~   96 (199)
                          +.+   ....++.+|+++.|+++.
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEec
Confidence                222   233467899999988765

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.44  E-value=2.1e-06  Score=61.83  Aligned_cols=38  Identities=18%  Similarity=0.232  Sum_probs=29.4

Q ss_pred             cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..++...+  .-.|++++..+|++.++|||+.+     +|...++
T Consensus       128 ~LS~G~~q--rl~la~al~~~p~~lllDEP~~~-----LD~~~~~  165 (210)
T cd03269         128 ELSKGNQQ--KVQFIAAVIHDPELLILDEPFSG-----LDPVNVE  165 (210)
T ss_pred             hCCHHHHH--HHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHH
Confidence            34443333  45599999999999999999999     9987653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.43  E-value=4.7e-06  Score=60.13  Aligned_cols=39  Identities=15%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++..  .-.-.+++++..+|.+.++|||+.+     +|...+.
T Consensus       129 ~~LS~G~--~qr~~laral~~~p~llllDEPt~~-----LD~~~~~  167 (213)
T cd03301         129 KQLSGGQ--RQRVALGRAIVREPKVFLMDEPLSN-----LDAKLRV  167 (213)
T ss_pred             hhCCHHH--HHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence            3444443  3445699999999999999999999     9987653

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.43  E-value=2.3e-06  Score=61.75  Aligned_cols=38  Identities=24%  Similarity=0.292  Sum_probs=29.5

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ...++...+  .-.|++++..+|+++++|||+.+     +|...+
T Consensus       134 ~~LS~G~~q--rv~la~al~~~p~llllDEP~~~-----LD~~~~  171 (213)
T cd03262         134 AQLSGGQQQ--RVAIARALAMNPKVMLFDEPTSA-----LDPELV  171 (213)
T ss_pred             cccCHHHHH--HHHHHHHHhcCCCEEEEeCCccC-----CCHHHH
Confidence            334444333  45699999999999999999999     998765

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.43  E-value=2.7e-06  Score=61.59  Aligned_cols=39  Identities=26%  Similarity=0.326  Sum_probs=30.0

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...+|...  -.-.|++++..+|.++++|||+.+     +|....+
T Consensus       139 ~~LS~G~~--qrv~la~al~~~p~lllLDEP~~~-----LD~~~~~  177 (218)
T cd03255         139 SELSGGQQ--QRVAIARALANDPKIILADEPTGN-----LDSETGK  177 (218)
T ss_pred             hhcCHHHH--HHHHHHHHHccCCCEEEEcCCccc-----CCHHHHH
Confidence            34444433  345699999999999999999999     9987653

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=1.5e-06  Score=66.74  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=31.6

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++|...+.  -.|++++..+|+++++|||+.+     +|...+.
T Consensus       151 p~~LSgGq~QR--v~iArAL~~~P~llilDEPts~-----LD~~~~~  190 (326)
T PRK11022        151 PHQLSGGMSQR--VMIAMAIACRPKLLIADEPTTA-----LDVTIQA  190 (326)
T ss_pred             chhCCHHHHHH--HHHHHHHHhCCCEEEEeCCCCC-----CCHHHHH
Confidence            34555554444  5599999999999999999999     9987654

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.43  E-value=2.4e-06  Score=61.71  Aligned_cols=33  Identities=18%  Similarity=0.344  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|++.++|||+.+     +|...++
T Consensus       141 ~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~  173 (214)
T cd03292         141 EQQRVAIARAIVNSPTILIADEPTGN-----LDPDTTW  173 (214)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCCc-----CCHHHHH
Confidence            34456699999999999999999999     9987653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.42  E-value=3e-07  Score=66.95  Aligned_cols=42  Identities=17%  Similarity=0.184  Sum_probs=34.0

Q ss_pred             EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       149 ~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      -.....++|...+.  -.|+..+.-+|+++.+|||+..     +|....
T Consensus       133 ~r~p~~LSGGqkqR--vaIA~vLa~~P~iliLDEPta~-----LD~~~~  174 (235)
T COG1122         133 DRPPFNLSGGQKQR--VAIAGVLAMGPEILLLDEPTAG-----LDPKGR  174 (235)
T ss_pred             cCCccccCCcceee--HHhhHHHHcCCCEEEEcCCCCC-----CCHHHH
Confidence            34456677766665  5699999999999999999999     998764

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=5.8e-07  Score=67.30  Aligned_cols=39  Identities=15%  Similarity=0.172  Sum_probs=30.5

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...+|...+  .-.|++++..+|.++++|||+.+     +|...++
T Consensus       135 ~~LSgG~~q--rl~laraL~~~p~lllLDEPt~~-----LD~~~~~  173 (271)
T PRK13638        135 QCLSHGQKK--RVAIAGALVLQARYLLLDEPTAG-----LDPAGRT  173 (271)
T ss_pred             hhCCHHHHH--HHHHHHHHHcCCCEEEEeCCccc-----CCHHHHH
Confidence            445544444  45699999999999999999999     9987653

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.42  E-value=2.3e-06  Score=65.08  Aligned_cols=40  Identities=23%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ++..++...+.  -.+++++..+|+++++|||+.+     +|...++
T Consensus       131 ~~~LS~G~~qr--v~la~al~~~p~lliLDEPt~g-----LD~~~~~  170 (301)
T TIGR03522       131 IGQLSKGYRQR--VGLAQALIHDPKVLILDEPTTG-----LDPNQLV  170 (301)
T ss_pred             hhhCCHHHHHH--HHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence            34555544444  5599999999999999999999     9988653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.42  E-value=4.5e-06  Score=59.87  Aligned_cols=33  Identities=21%  Similarity=0.331  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|.++++|||+.+     +|....+
T Consensus       131 ~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~  163 (205)
T cd03226         131 QKQRLAIAAALLSGKDLLIFDEPTSG-----LDYKNME  163 (205)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCCcc-----CCHHHHH
Confidence            33446699999999999999999999     9987653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.42  E-value=3.5e-06  Score=60.84  Aligned_cols=38  Identities=18%  Similarity=0.274  Sum_probs=29.9

Q ss_pred             cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..+|..  .-.-.|++++..+|.++++|||+.+     +|....+
T Consensus       137 ~LS~G~--~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~  174 (214)
T TIGR02673       137 QLSGGE--QQRVAIARAIVNSPPLLLADEPTGN-----LDPDLSE  174 (214)
T ss_pred             hCCHHH--HHHHHHHHHHhCCCCEEEEeCCccc-----CCHHHHH
Confidence            444433  4446699999999999999999999     9987653

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.42  E-value=2.8e-06  Score=61.74  Aligned_cols=87  Identities=16%  Similarity=0.126  Sum_probs=52.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcC--CCCC---ccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc------
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------   78 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------   78 (199)
                      ..+..-|+|+|++++|||+|+|.++..  .+..   ....|.|+-........ +.+..+.++||+|.......      
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~   82 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDA   82 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhh
Confidence            455678999999999999999998876  4421   12223443322222211 24578999999996543221      


Q ss_pred             ccccccC--CcEEEEEEeCCC
Q 029077           79 RDGYYIH--GQCAIIMFDVTA   97 (199)
Q Consensus        79 ~~~~~~~--~d~~i~v~d~~~   97 (199)
                      ....+..  ++.+|+..+...
T Consensus        83 ~~~~l~~llss~~i~n~~~~~  103 (224)
T cd01851          83 RLFALATLLSSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHHHhCEEEEeccCcc
Confidence            1112223  777777766553

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.41  E-value=2.2e-06  Score=60.14  Aligned_cols=31  Identities=32%  Similarity=0.510  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          163 PFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      -.-.+++++..+|++..+|||+.+     +|...++
T Consensus       107 qr~~la~al~~~p~llilDEP~~~-----LD~~~~~  137 (178)
T cd03229         107 QRVALARALAMDPDVLLLDEPTSA-----LDPITRR  137 (178)
T ss_pred             HHHHHHHHHHCCCCEEEEeCCccc-----CCHHHHH
Confidence            345699999999999999999999     9987653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.41  E-value=1.7e-06  Score=66.69  Aligned_cols=40  Identities=28%  Similarity=0.294  Sum_probs=32.0

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|...+  .-.|++++..+|.++++|||+.+     +|....+
T Consensus       138 ~~~LSgGqkQ--RV~IARAL~~~P~iLLlDEPts~-----LD~~t~~  177 (343)
T TIGR02314       138 PSNLSGGQKQ--RVAIARALASNPKVLLCDEATSA-----LDPATTQ  177 (343)
T ss_pred             hhhCCHHHHH--HHHHHHHHHhCCCEEEEeCCccc-----CCHHHHH
Confidence            4556655444  46699999999999999999999     9987653

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.41  E-value=4e-06  Score=60.12  Aligned_cols=38  Identities=24%  Similarity=0.132  Sum_probs=29.8

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +..++...  -.-.|++++..+|++.++|||+.+     +|....
T Consensus       128 ~~LS~G~~--qrl~la~al~~~p~llllDEPt~~-----LD~~~~  165 (204)
T PRK13538        128 RQLSAGQQ--RRVALARLWLTRAPLWILDEPFTA-----IDKQGV  165 (204)
T ss_pred             hhcCHHHH--HHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHH
Confidence            44444433  446699999999999999999999     998764

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.41  E-value=1.9e-07  Score=67.10  Aligned_cols=28  Identities=39%  Similarity=0.644  Sum_probs=24.8

Q ss_pred             HHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077          164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAA  196 (199)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~  196 (199)
                      +..|+++++.+|+++.+|||+..     +|+..
T Consensus       179 rvLiaRALv~~P~LLiLDEP~~G-----LDl~~  206 (257)
T COG1119         179 RVLIARALVKDPELLILDEPAQG-----LDLIA  206 (257)
T ss_pred             HHHHHHHHhcCCCEEEecCcccc-----CChHH
Confidence            45599999999999999999999     88754

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.41  E-value=3e-06  Score=64.62  Aligned_cols=143  Identities=15%  Similarity=0.109  Sum_probs=78.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCC---------c-c-----------ccceeEEEeeEEEE-------------e
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK---------K-Y-----------EPTIGVEVHPLDFF-------------T   57 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~---------~-~-----------~~~~~~~~~~~~~~-------------~   57 (199)
                      +.-.|+++|++|+||||++..+.......         . +           ....+..+......             .
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            45688999999999999998755311000         0 0           00111111111000             0


Q ss_pred             cCcEEEEEEEeCCCccccccc----cccc--------ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEe
Q 029077           58 NCGKIRFYCWDTAGQEKFGGL----RDGY--------YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN  125 (199)
Q Consensus        58 ~~~~~~~~l~D~~g~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~  125 (199)
                      ....+.+.++||+|.......    ...+        -...+..++|.|++....  .+.. ...+...  -.+.-+|.|
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~-a~~f~~~--~~~~giIlT  267 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQ-AKAFHEA--VGLTGIILT  267 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHH-HHHHHhh--CCCCEEEEE
Confidence            124578899999996542221    1111        124678899999985432  1221 1222111  123457789


Q ss_pred             CCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077          126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus       126 K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      |.|....  .......+...+.|+.+++  +|.+++++
T Consensus       268 KlD~t~~--~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        268 KLDGTAK--GGVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             CCCCCCC--ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            9995433  3344566677789988887  77777654

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.41  E-value=4e-06  Score=61.48  Aligned_cols=39  Identities=28%  Similarity=0.361  Sum_probs=30.2

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...+|...+  .-.+++++..+|.++++|||+.+     +|....+
T Consensus       142 ~~LSgG~~q--rv~la~al~~~p~llllDEPt~~-----LD~~~~~  180 (236)
T cd03219         142 GELSYGQQR--RLEIARALATDPKLLLLDEPAAG-----LNPEETE  180 (236)
T ss_pred             hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence            344444444  45699999999999999999999     9987653

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.41  E-value=2.5e-06  Score=61.80  Aligned_cols=32  Identities=25%  Similarity=0.474  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++..+|.++++|||+.+     +|....
T Consensus       141 ~~qrv~laral~~~p~illlDEPt~~-----LD~~~~  172 (218)
T cd03266         141 MRQKVAIARALVHDPPVLLLDEPTTG-----LDVMAT  172 (218)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCcC-----CCHHHH
Confidence            34456699999999999999999999     998765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=6.1e-07  Score=68.65  Aligned_cols=33  Identities=21%  Similarity=0.349  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|.++++|||+.+     +|..+++
T Consensus       181 qkqRvaiAraL~~~p~iLLLDEPtsg-----LD~~~~~  213 (320)
T PRK13631        181 QKRRVAIAGILAIQPEILIFDEPTAG-----LDPKGEH  213 (320)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCccC-----CCHHHHH
Confidence            44557799999999999999999999     9987653

>TIGR00092 GTP-binding protein YchF

Probab=98.41  E-value=1.2e-06  Score=67.63  Aligned_cols=83  Identities=17%  Similarity=-0.028  Sum_probs=50.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC-CC-ccc-----cceeEEEeeEEE------Ee---cCcEEEEEEEeCCCcccc--
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEF-EK-KYE-----PTIGVEVHPLDF------FT---NCGKIRFYCWDTAGQEKF--   75 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~-~~-~~~-----~~~~~~~~~~~~------~~---~~~~~~~~l~D~~g~~~~--   75 (199)
                      ++++++|.+++|||||++.+..... .. .|.     |..|+-..+...      .+   ......+.+.|+||....  
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7999999999999999999775543 22 221     122211111000      00   011246788999996442  


Q ss_pred             -----cccccccccCCcEEEEEEeCC
Q 029077           76 -----GGLRDGYYIHGQCAIIMFDVT   96 (199)
Q Consensus        76 -----~~~~~~~~~~~d~~i~v~d~~   96 (199)
                           .......++++|++++|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                 112334578999999999975

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.41  E-value=4.3e-06  Score=62.55  Aligned_cols=39  Identities=26%  Similarity=0.210  Sum_probs=30.6

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.++|...+  .-.|++++..+|.++++|||+.+     +|...++
T Consensus       142 ~~LSgGq~q--rv~laral~~~p~lllLDEPt~~-----LD~~~~~  180 (269)
T PRK11831        142 SELSGGMAR--RAALARAIALEPDLIMFDEPFVG-----QDPITMG  180 (269)
T ss_pred             hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHH
Confidence            445544444  45699999999999999999999     9987654

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.41  E-value=3.5e-06  Score=61.68  Aligned_cols=32  Identities=28%  Similarity=0.407  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .-.-.|++++..+|.++++|||+.+     +|...++
T Consensus       146 ~qrv~la~al~~~p~lllLDEP~~~-----LD~~~~~  177 (233)
T cd03258         146 KQRVGIARALANNPKVLLCDEATSA-----LDPETTQ  177 (233)
T ss_pred             HHHHHHHHHHhcCCCEEEecCCCCc-----CCHHHHH
Confidence            3446699999999999999999999     9987653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.40  E-value=7.9e-06  Score=59.05  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +...-.+++++..+|.++++|||+.+     +|....+
T Consensus       142 ~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~  174 (214)
T PRK13543        142 QKKRLALARLWLSPAPLWLLDEPYAN-----LDLEGIT  174 (214)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHH
Confidence            44556799999999999999999999     9987653

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.40  E-value=6.6e-06  Score=58.68  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .-.-.|++++..+|++.++|||+.+     +|...++
T Consensus       133 ~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~  164 (198)
T TIGR01189       133 QRRLALARLWLSRAPLWILDEPTTA-----LDKAGVA  164 (198)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHH
Confidence            3445699999999999999999999     9987653

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.40  E-value=6.2e-06  Score=61.28  Aligned_cols=33  Identities=24%  Similarity=0.387  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|.++++|||+.+     +|....+
T Consensus       157 ~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~  189 (257)
T PRK10619        157 QQQRVSIARALAMEPEVLLFDEPTSA-----LDPELVG  189 (257)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHH
Confidence            34456699999999999999999999     9987653

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.40  E-value=2.6e-06  Score=61.41  Aligned_cols=39  Identities=23%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++..  .-.-.|++++..+|.+.++|||+.+     +|...++
T Consensus       129 ~~LS~G~--~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~  167 (211)
T cd03264         129 GSLSGGM--RRRVGIAQALVGDPSILIVDEPTAG-----LDPEERI  167 (211)
T ss_pred             hhCCHHH--HHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence            3444443  3446699999999999999999999     9987654

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.40  E-value=4.1e-06  Score=60.76  Aligned_cols=32  Identities=31%  Similarity=0.501  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .-.-.|++++..+|.++++|||+.+     +|....+
T Consensus       139 ~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~  170 (220)
T cd03263         139 KRKLSLAIALIGGPSVLLLDEPTSG-----LDPASRR  170 (220)
T ss_pred             HHHHHHHHHHhcCCCEEEECCCCCC-----CCHHHHH
Confidence            3446699999999999999999999     9987653

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.39  E-value=1.1e-06  Score=64.42  Aligned_cols=39  Identities=28%  Similarity=0.386  Sum_probs=31.7

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...+|...+.  -.|++++.-+|.+...|||..+     +|...|.
T Consensus       108 helSGGQrQR--i~IARALal~P~liV~DEpvSa-----LDvSiqa  146 (268)
T COG4608         108 HELSGGQRQR--IGIARALALNPKLIVADEPVSA-----LDVSVQA  146 (268)
T ss_pred             cccCchhhhh--HHHHHHHhhCCcEEEecCchhh-----cchhHHH
Confidence            4455666666  4499999999999999999999     9987664

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.39  E-value=2.8e-06  Score=60.79  Aligned_cols=32  Identities=9%  Similarity=0.149  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...-.|++++..+|+++++|||+.+     +|...++
T Consensus       124 ~qrl~laral~~~p~llllDEPt~~-----LD~~~~~  155 (202)
T cd03233         124 RKRVSIAEALVSRASVLCWDNSTRG-----LDSSTAL  155 (202)
T ss_pred             HHHHHHHHHHhhCCCEEEEcCCCcc-----CCHHHHH
Confidence            3345699999999999999999999     9987654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=3.6e-06  Score=65.11  Aligned_cols=38  Identities=24%  Similarity=0.300  Sum_probs=30.2

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.++|...+  .-.|++++..+|.++++|||+.+     +|....
T Consensus       139 ~~LSgGq~q--Rv~lAraL~~~p~iLlLDEPts~-----LD~~~~  176 (343)
T PRK11153        139 AQLSGGQKQ--RVAIARALASNPKVLLCDEATSA-----LDPATT  176 (343)
T ss_pred             hhCCHHHHH--HHHHHHHHHcCCCEEEEeCCccc-----CCHHHH
Confidence            445554444  46699999999999999999999     998765

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=6.6e-07  Score=68.03  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|.++++|||+.+     +|...++
T Consensus       170 qkqrvalA~aL~~~P~lLlLDEPt~~-----LD~~~~~  202 (305)
T PRK13651        170 QKRRVALAGILAMEPDFLVFDEPTAG-----LDPQGVK  202 (305)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHH
Confidence            34456799999999999999999999     9987653

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.38  E-value=4.6e-06  Score=63.49  Aligned_cols=39  Identities=31%  Similarity=0.351  Sum_probs=30.5

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...+|...  ..-.|++++..+|+++++|||+.+     +|....+
T Consensus       134 ~~LSgG~~--qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~  172 (303)
T TIGR01288       134 ALLSGGMK--RRLTLARALINDPQLLILDEPTTG-----LDPHARH  172 (303)
T ss_pred             hhCCHHHH--HHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHH
Confidence            44544433  345699999999999999999999     9987653

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.38  E-value=1.8e-06  Score=63.70  Aligned_cols=38  Identities=16%  Similarity=0.301  Sum_probs=30.1

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.++|...+  .-.|++++..+|.++++|||+.+     +|....
T Consensus       114 ~~LSgGe~q--rv~iaraL~~~p~llllDEPt~~-----LD~~~~  151 (246)
T cd03237         114 PELSGGELQ--RVAIAACLSKDADIYLLDEPSAY-----LDVEQR  151 (246)
T ss_pred             hhCCHHHHH--HHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence            445554444  45699999999999999999999     998765

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.38  E-value=3e-06  Score=59.15  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          163 PFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       163 ~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      -.-.|++++..+|+++++|||+.+     +|...++
T Consensus       102 qrv~laral~~~p~illlDEPt~~-----LD~~~~~  132 (173)
T cd03230         102 QRLALAQALLHDPELLILDEPTSG-----LDPESRR  132 (173)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHH
Confidence            345699999999999999999999     9987653

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.38  E-value=4.1e-06  Score=60.79  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +...-.|++++..+|.++.+|||+..     +|...++
T Consensus       146 ~~qrv~laral~~~p~illlDEP~~~-----LD~~~~~  178 (220)
T TIGR02982       146 QKQRVAIARALVHRPKLVLADEPTAA-----LDSKSGR  178 (220)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHH
Confidence            34456699999999999999999999     9988753

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.38  E-value=1.8e-06  Score=62.73  Aligned_cols=39  Identities=21%  Similarity=0.314  Sum_probs=30.1

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++...+  .-.|++++..+|.++++|||+.+     +|....+
T Consensus       131 ~~LS~G~~q--rv~laral~~~p~llllDEPt~~-----LD~~~~~  169 (222)
T cd03224         131 GTLSGGEQQ--MLAIARALMSRPKLLLLDEPSEG-----LAPKIVE  169 (222)
T ss_pred             hhCCHHHHH--HHHHHHHHhcCCCEEEECCCccc-----CCHHHHH
Confidence            334444333  45699999999999999999999     9987653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.38  E-value=1.5e-06  Score=62.44  Aligned_cols=39  Identities=23%  Similarity=0.225  Sum_probs=30.2

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++...  -.-.|++++..+|.++++|||+.+     +|...++
T Consensus       125 ~~LS~G~~--qrv~la~al~~~p~llllDEPt~~-----LD~~~~~  163 (208)
T cd03268         125 KGFSLGMK--QRLGIALALLGNPDLLILDEPTNG-----LDPDGIK  163 (208)
T ss_pred             hhCCHHHH--HHHHHHHHHhcCCCEEEECCCccc-----CCHHHHH
Confidence            34444433  345699999999999999999999     9987653

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=3.2e-07  Score=67.88  Aligned_cols=111  Identities=14%  Similarity=0.133  Sum_probs=71.0

Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH----
Q 029077           63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----  138 (199)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~----  138 (199)
                      .+.+.|+||++..-..+..-..-.|+.++++...+...--...+.+..+... .-+.++++-||.|+-.+....+.    
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~LkhiiilQNKiDli~e~~A~eq~e~I  204 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDLIKESQALEQHEQI  204 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-hhceEEEEechhhhhhHHHHHHHHHHH
Confidence            5678899998875554444445567777777765432211122222222111 24667888899999765443332    


Q ss_pred             HHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHhCC
Q 029077          139 VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       139 ~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~  174 (199)
                      ..|.+.   .+.+++.+||.-+.|++-+.+.|.+.+...
T Consensus       205 ~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP  243 (466)
T KOG0466|consen  205 QKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP  243 (466)
T ss_pred             HHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence            233332   357899999999999999999999988643

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.37  E-value=4e-06  Score=61.69  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=30.2

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++...  -.-.|++++..+|.++++|||+.+     +|...++
T Consensus       136 ~~LS~G~~--qrv~laral~~~p~llllDEPt~~-----LD~~~~~  174 (241)
T PRK10895        136 QSLSGGER--RRVEIARALAANPKFILLDEPFAG-----VDPISVI  174 (241)
T ss_pred             hhCCHHHH--HHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence            34444433  345699999999999999999999     9987653

>PRK10908 cell division protein FtsE; Provisional

Probab=98.37  E-value=5.6e-06  Score=60.12  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++...|+++++|||+.+     +|...++
T Consensus       142 ~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~  174 (222)
T PRK10908        142 EQQRVGIARAVVNKPAVLLADEPTGN-----LDDALSE  174 (222)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCCc-----CCHHHHH
Confidence            34456699999999999999999999     9987653

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.37  E-value=6.1e-06  Score=59.91  Aligned_cols=87  Identities=17%  Similarity=0.119  Sum_probs=60.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc-------cccccccccCC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYIHG   86 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~   86 (199)
                      -||.++|-+.+||||++..+. +.+ .+.....+++...+.........++++.|.||.-+.       ........+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~-g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLT-GTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhc-CCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            489999999999999999854 333 333344555555655555566788999999984321       12234557889


Q ss_pred             cEEEEEEeCCChhhHh
Q 029077           87 QCAIIMFDVTARLTYK  102 (199)
Q Consensus        87 d~~i~v~d~~~~~s~~  102 (199)
                      +.+++|.|+..+-+..
T Consensus       138 nli~~vld~~kp~~hk  153 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHK  153 (358)
T ss_pred             cEEEEEeeccCcccHH
Confidence            9999999988765443

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.37  E-value=6.5e-06  Score=61.46  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +...-.|++++..+|.++++|||+.+     +|...+
T Consensus       155 e~qrv~laral~~~p~illLDEPt~~-----LD~~~~  186 (265)
T TIGR02769       155 QLQRINIARALAVKPKLIVLDEAVSN-----LDMVLQ  186 (265)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence            34456699999999999999999999     998764

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.37  E-value=5.3e-06  Score=61.07  Aligned_cols=31  Identities=32%  Similarity=0.443  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .-.-.|++++..+|.++++|||+.+     +|....
T Consensus       141 ~qrv~laral~~~p~llllDEPt~~-----LD~~~~  171 (242)
T cd03295         141 QQRVGVARALAADPPLLLMDEPFGA-----LDPITR  171 (242)
T ss_pred             HHHHHHHHHHhcCCCEEEecCCccc-----CCHHHH
Confidence            3445699999999999999999999     988764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.36  E-value=5.5e-07  Score=65.24  Aligned_cols=37  Identities=27%  Similarity=0.272  Sum_probs=29.6

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA  195 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~  195 (199)
                      -+.++|..-+  ...+++++...|.+.++|||+.+     +|+-
T Consensus       133 P~eLSGGQQQ--RVGv~RALAadP~ilLMDEPFgA-----LDpI  169 (309)
T COG1125         133 PHELSGGQQQ--RVGVARALAADPPILLMDEPFGA-----LDPI  169 (309)
T ss_pred             chhcCcchhh--HHHHHHHHhcCCCeEeecCCccc-----cChh
Confidence            4566665444  46799999999999999999999     7763

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=3.6e-06  Score=65.34  Aligned_cols=39  Identities=13%  Similarity=0.265  Sum_probs=30.7

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..++|..  .-.-.|++++..+|+++++|||+.+     +|...++
T Consensus       133 ~~LSgGq--~QRvalARAL~~~P~llLLDEP~s~-----LD~~~r~  171 (356)
T PRK11650        133 RELSGGQ--RQRVAMGRAIVREPAVFLFDEPLSN-----LDAKLRV  171 (356)
T ss_pred             hhCCHHH--HHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHH
Confidence            3444443  4457799999999999999999999     9987653

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.36  E-value=1.9e-06  Score=62.12  Aligned_cols=39  Identities=23%  Similarity=0.308  Sum_probs=30.6

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +..+|...+  .-.|++++..+|+++++|||+.+     +|...++
T Consensus       133 ~~LSgG~~q--rv~laral~~~p~llllDEPt~~-----LD~~~~~  171 (211)
T cd03225         133 FTLSGGQKQ--RVAIAGVLAMDPDILLLDEPTAG-----LDPAGRR  171 (211)
T ss_pred             ccCCHHHHH--HHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence            445544444  45699999999999999999999     9987653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.36  E-value=1.1e-06  Score=61.58  Aligned_cols=28  Identities=25%  Similarity=0.528  Sum_probs=24.9

Q ss_pred             HHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077          164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAA  196 (199)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~  196 (199)
                      ...|+++++++|.++.+|||+..     +|.-.
T Consensus       141 kV~iARAlvh~P~i~vlDEP~sG-----LDi~~  168 (245)
T COG4555         141 KVAIARALVHDPSILVLDEPTSG-----LDIRT  168 (245)
T ss_pred             HHHHHHHHhcCCCeEEEcCCCCC-----ccHHH
Confidence            46799999999999999999999     88743

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.36  E-value=2.1e-06  Score=62.66  Aligned_cols=39  Identities=23%  Similarity=0.287  Sum_probs=30.4

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...+|...+  .-.|++++..+|.+.++|||+.+     +|...++
T Consensus       130 ~~LS~G~~q--rv~la~al~~~p~illlDEPt~~-----LD~~~~~  168 (230)
T TIGR03410       130 GDLSGGQQQ--QLAIARALVTRPKLLLLDEPTEG-----IQPSIIK  168 (230)
T ss_pred             hhCCHHHHH--HHHHHHHHhcCCCEEEecCCccc-----CCHHHHH
Confidence            344444434  46699999999999999999999     9987653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.36  E-value=2.7e-06  Score=58.73  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=29.7

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA  196 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~  196 (199)
                      ..++|..  .-..++++.++...-++++|||+.+     +|++.
T Consensus       128 ~~LSGGq--RQRvALARclvR~~PilLLDEPFsA-----LdP~L  164 (231)
T COG3840         128 GELSGGQ--RQRVALARCLVREQPILLLDEPFSA-----LDPAL  164 (231)
T ss_pred             cccCchH--HHHHHHHHHHhccCCeEEecCchhh-----cCHHH
Confidence            4455544  4457899999999999999999999     88864

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=8.1e-06  Score=59.02  Aligned_cols=156  Identities=17%  Similarity=0.218  Sum_probs=95.9

Q ss_pred             eEEEEEcCCCC--CHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc--EEEEEEEeCCCcccccccccccccCCcEE
Q 029077           14 FKLVIVGDGGT--GKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        14 ~~i~viG~~~~--GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      --++|+|.+|+  ||-+|+.+|....+.........+.++.+.+...+.  ++.+.+..... +.+-.. ........++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicd-e~~lpn-~~~a~pl~a~   82 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICD-EKFLPN-AEIAEPLQAF   82 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccc-hhccCC-cccccceeeE
Confidence            45789999999  999999998877776665555555666655533222  23333332221 111111 2223456788


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-------------------------------------
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-------------------------------------  132 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------------------------------  132 (199)
                      +++||.+....+..+..|+..-....-+ -++.+|||.|....                                     
T Consensus        83 vmvfdlse~s~l~alqdwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss  161 (418)
T KOG4273|consen   83 VMVFDLSEKSGLDALQDWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS  161 (418)
T ss_pred             EEEEeccchhhhHHHHhhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence            9999999999899899998743222111 13456788884210                                     


Q ss_pred             ---------cccHHHHHHHHHcCCcEEEeccCC------------CCChHHHHHHHHHHHh
Q 029077          133 ---------QVKAKQVTFHRKKNLQYYEISAKS------------NYNFEKPFLYLARKLA  172 (199)
Q Consensus       133 ---------~~~~~~~~~~~~~~~~~~~~s~~~------------~~~v~~~~~~i~~~~~  172 (199)
                               .+.....++|.++++.+++.++..            ..|++.+|.++...+.
T Consensus       162 llgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw  222 (418)
T KOG4273|consen  162 LLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW  222 (418)
T ss_pred             ccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence                     011234578889999999987732            2467787777765543

>PRK13796 GTPase YqeH; Provisional

Probab=98.36  E-value=8.1e-07  Score=69.16  Aligned_cols=57  Identities=19%  Similarity=0.272  Sum_probs=40.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC----CccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFE----KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (199)
                      .++.++|.+|||||||+|+|+.....    ....+..|+|.....+.+++.   ..++||||..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence            47999999999999999998743211    113345666766666655433   3689999963

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.36  E-value=5.7e-06  Score=64.62  Aligned_cols=38  Identities=21%  Similarity=0.386  Sum_probs=30.2

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ..++|..  .-.-.|++++..+|+++++|||+.+     +|....
T Consensus       132 ~~LSgGq--~QRvaLAraL~~~P~lLLLDEPts~-----LD~~~~  169 (369)
T PRK11000        132 KALSGGQ--RQRVAIGRTLVAEPSVFLLDEPLSN-----LDAALR  169 (369)
T ss_pred             hhCCHHH--HHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence            3455443  4446699999999999999999999     998764

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=1.3e-06  Score=65.97  Aligned_cols=39  Identities=15%  Similarity=0.196  Sum_probs=30.6

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..++|...  -.-.|++++..+|.++++|||+.+     +|...++
T Consensus       143 ~~LSgGq~--qrv~iAraL~~~P~llllDEPt~g-----LD~~~~~  181 (287)
T PRK13637        143 FELSGGQK--RRVAIAGVVAMEPKILILDEPTAG-----LDPKGRD  181 (287)
T ss_pred             ccCCHHHH--HHHHHHHHHHcCCCEEEEECCccC-----CCHHHHH
Confidence            44544443  446699999999999999999999     9987653

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.35  E-value=2.9e-06  Score=64.01  Aligned_cols=89  Identities=19%  Similarity=0.225  Sum_probs=61.6

Q ss_pred             cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCC
Q 029077           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN  159 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      ...+..+|++++|+|+.++.+...  .++.   ....++|+++|.||.|+.+........+..+..+..++.+|+.++.|
T Consensus        19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~---~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~g   93 (287)
T PRK09563         19 KENLKLVDVVIEVLDARIPLSSEN--PMID---KIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQG   93 (287)
T ss_pred             HHHhhhCCEEEEEEECCCCCCCCC--hhHH---HHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCccc
Confidence            445788999999999987654332  1111   22237899999999999653222222333344467789999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 029077          160 FEKPFLYLARKLAG  173 (199)
Q Consensus       160 v~~~~~~i~~~~~~  173 (199)
                      ++++.+.+.+.+.+
T Consensus        94 i~~L~~~l~~~l~~  107 (287)
T PRK09563         94 VKKILKAAKKLLKE  107 (287)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999888777643

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=3.5e-06  Score=64.69  Aligned_cols=38  Identities=26%  Similarity=0.370  Sum_probs=30.4

Q ss_pred             cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .++|..  .....|++++..+|+++++|||+.+     +|...++
T Consensus       154 ~LSgGq--~QRv~iArAL~~~P~lLilDEPts~-----LD~~~~~  191 (327)
T PRK11308        154 MFSGGQ--RQRIAIARALMLDPDVVVADEPVSA-----LDVSVQA  191 (327)
T ss_pred             cCCHHH--HHHHHHHHHHHcCCCEEEEECCCcc-----CCHHHHH
Confidence            444443  4456699999999999999999999     9987764

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=6.6e-06  Score=60.21  Aligned_cols=33  Identities=24%  Similarity=0.437  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|....+
T Consensus       150 ~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~  182 (233)
T PRK11629        150 ERQRVAIARALVNNPRLVLADEPTGN-----LDARNAD  182 (233)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHH
Confidence            34446699999999999999999999     9987653

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=5.6e-06  Score=60.94  Aligned_cols=33  Identities=21%  Similarity=0.387  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|.++.+|||+.+     +|...++
T Consensus       146 ~~qrv~laral~~~p~llilDEPt~~-----LD~~~~~  178 (242)
T PRK11124        146 QQQRVAIARALMMEPQVLLFDEPTAA-----LDPEITA  178 (242)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCCc-----CCHHHHH
Confidence            34446699999999999999999999     9987653

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.34  E-value=8.8e-06  Score=60.12  Aligned_cols=31  Identities=32%  Similarity=0.509  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .-.-.|++++..+|++.++|||+.+     +|...+
T Consensus       150 ~qrv~laral~~~p~llllDEPt~~-----LD~~~~  180 (247)
T TIGR00972       150 QQRLCIARALAVEPEVLLLDEPTSA-----LDPIAT  180 (247)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence            3446699999999999999999999     998765

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=4.7e-06  Score=62.89  Aligned_cols=39  Identities=15%  Similarity=0.236  Sum_probs=30.5

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...+|..  .-...|++++..+|.++++|||+.+     +|...+.
T Consensus       144 ~~LSgGq--~qrv~laraL~~~p~illlDEPt~~-----LD~~~~~  182 (286)
T PRK13646        144 FQMSGGQ--MRKIAIVSILAMNPDIIVLDEPTAG-----LDPQSKR  182 (286)
T ss_pred             ccCCHHH--HHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHH
Confidence            3444443  3456799999999999999999999     9987653

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.34  E-value=4.3e-06  Score=65.06  Aligned_cols=38  Identities=21%  Similarity=0.324  Sum_probs=30.1

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ..++|.  +.-.-.|++++..+|+++++|||+.+     +|....
T Consensus       136 ~~LSgG--q~QRvaLARAL~~~P~llLLDEP~s~-----LD~~~r  173 (362)
T TIGR03258       136 AQLSGG--MQQRIAIARAIAIEPDVLLLDEPLSA-----LDANIR  173 (362)
T ss_pred             hhCCHH--HHHHHHHHHHHhcCCCEEEEcCcccc-----CCHHHH
Confidence            344443  44456799999999999999999999     998754

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.34  E-value=1.7e-06  Score=60.44  Aligned_cols=32  Identities=28%  Similarity=0.538  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .-.-.|++++..+|+++++|||+.+     +|...++
T Consensus       102 ~qrv~la~al~~~p~~lllDEPt~~-----LD~~~~~  133 (173)
T cd03246         102 RQRLGLARALYGNPRILVLDEPNSH-----LDVEGER  133 (173)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCccc-----cCHHHHH
Confidence            3445699999999999999999999     9987653

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=4.6e-06  Score=61.90  Aligned_cols=38  Identities=16%  Similarity=0.242  Sum_probs=30.0

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ...++...+  .-.|++++..+|.++++|||+.+     +|....
T Consensus       152 ~~LS~G~~q--rv~la~al~~~p~llllDEPt~~-----LD~~~~  189 (255)
T PRK11300        152 GNLAYGQQR--RLEIARCMVTQPEILMLDEPAAG-----LNPKET  189 (255)
T ss_pred             hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCccC-----CCHHHH
Confidence            344444444  45699999999999999999999     998765

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.34  E-value=5.2e-06  Score=64.42  Aligned_cols=32  Identities=31%  Similarity=0.487  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|....
T Consensus       139 q~QRvaLARaL~~~P~llLLDEP~s~-----LD~~~r  170 (353)
T TIGR03265       139 QQQRVALARALATSPGLLLLDEPLSA-----LDARVR  170 (353)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHH
Confidence            45557799999999999999999999     987754

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=4e-06  Score=64.94  Aligned_cols=39  Identities=21%  Similarity=0.269  Sum_probs=31.0

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..++|.  +...-.|++++..+|+++++|||+.+     +|....+
T Consensus       135 ~~LSgG--q~QRVaLARaL~~~P~lLLLDEP~s~-----LD~~~r~  173 (351)
T PRK11432        135 DQISGG--QQQRVALARALILKPKVLLFDEPLSN-----LDANLRR  173 (351)
T ss_pred             hhCCHH--HHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHH
Confidence            445444  44557799999999999999999999     9987643

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.34  E-value=2.1e-06  Score=61.96  Aligned_cols=38  Identities=29%  Similarity=0.399  Sum_probs=30.0

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ...+|...+  .-.|++++..+|+++++|||+.+     +|....
T Consensus       131 ~~LSgG~~q--rv~la~al~~~p~llllDEPt~~-----LD~~~~  168 (213)
T cd03235         131 GELSGGQQQ--RVLLARALVQDPDLLLLDEPFAG-----VDPKTQ  168 (213)
T ss_pred             ccCCHHHHH--HHHHHHHHHcCCCEEEEeCCccc-----CCHHHH
Confidence            445544444  45699999999999999999999     998764

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.34  E-value=2.4e-06  Score=59.88  Aligned_cols=39  Identities=23%  Similarity=0.221  Sum_probs=30.2

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ....++...  ..-.|++++..+|+++.+|||+.+     +|....
T Consensus        96 ~~~LS~G~~--qrv~laral~~~p~~lllDEP~~~-----LD~~~~  134 (178)
T cd03247          96 GRRFSGGER--QRLALARILLQDAPIVLLDEPTVG-----LDPITE  134 (178)
T ss_pred             cccCCHHHH--HHHHHHHHHhcCCCEEEEECCccc-----CCHHHH
Confidence            344544433  445699999999999999999999     998765

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.33  E-value=8.1e-06  Score=58.96  Aligned_cols=39  Identities=33%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++..  ...-.|++++..+|.++++|||+.+     +|....+
T Consensus       130 ~~LS~G~--~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~  168 (214)
T cd03297         130 AQLSGGE--KQRVALARALAAQPELLLLDEPFSA-----LDRALRL  168 (214)
T ss_pred             ccCCHHH--HHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence            3444443  3446699999999999999999999     9987653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.33  E-value=1e-05  Score=59.34  Aligned_cols=39  Identities=23%  Similarity=0.328  Sum_probs=30.0

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++...+  .-.+++++..+|.++++|||+.+     +|...+.
T Consensus       152 ~~LS~G~~q--rl~la~al~~~p~llllDEPt~~-----LD~~~~~  190 (236)
T cd03267         152 RQLSLGQRM--RAEIAAALLHEPEILFLDEPTIG-----LDVVAQE  190 (236)
T ss_pred             hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCCCC-----CCHHHHH
Confidence            344444333  45699999999999999999999     9987653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.33  E-value=6.6e-07  Score=64.02  Aligned_cols=33  Identities=27%  Similarity=0.345  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +...-.+++++..+|.+.++|||+.+     +|....+
T Consensus       130 ~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~  162 (201)
T cd03231         130 QQRRVALARLLLSGRPLWILDEPTTA-----LDKAGVA  162 (201)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHH
Confidence            34446699999999999999999999     9987653

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.33  E-value=2.4e-06  Score=64.63  Aligned_cols=39  Identities=21%  Similarity=0.114  Sum_probs=30.3

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.+++...  -.-.|++++..+|.++++|||+.+     +|....+
T Consensus       149 ~~LS~Gq~--qrv~laral~~~p~lLlLDEPt~~-----LD~~~~~  187 (289)
T PRK13645        149 FELSGGQK--RRVALAGIIAMDGNTLVLDEPTGG-----LDPKGEE  187 (289)
T ss_pred             hhCCHHHH--HHHHHHHHHHhCCCEEEEeCCccc-----CCHHHHH
Confidence            44444433  445699999999999999999999     9987653

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.33  E-value=1.4e-06  Score=64.20  Aligned_cols=57  Identities=18%  Similarity=0.115  Sum_probs=34.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC--cc----ccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEK--KY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (199)
                      -.++++|.+|+|||||+|.|+......  ..    ....+++.....+...+    -.++||||...
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~  183 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE  183 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence            378899999999999999977532211  11    11122343333343322    26899999644

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.33  E-value=1.1e-06  Score=62.31  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=29.8

Q ss_pred             cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..+|...+  .-.|++++..+|.++++|||+.+     +|...++
T Consensus       108 ~LSgGe~q--rv~la~al~~~p~vlllDEP~~~-----LD~~~~~  145 (192)
T cd03232         108 GLSVEQRK--RLTIGVELAAKPSILFLDEPTSG-----LDSQAAY  145 (192)
T ss_pred             cCCHHHhH--HHHHHHHHhcCCcEEEEeCCCcC-----CCHHHHH
Confidence            44444444  45699999999999999999999     9887653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.33  E-value=1.6e-06  Score=67.39  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=39.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCC----CCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (199)
                      .++.++|.+|||||||+|+++....    .....+..|++.....+..+.   .+.++||||...
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~  216 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIIN  216 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCC
Confidence            4899999999999999999875322    112334556666655555422   246999999653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.32  E-value=6.5e-06  Score=59.75  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=30.2

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...+|...  -.-.|++++..+|.++++|||+.+     +|...++
T Consensus       140 ~~LS~G~~--qrv~laral~~~p~illlDEPt~~-----LD~~~~~  178 (221)
T TIGR02211       140 SELSGGER--QRVAIARALVNQPSLVLADEPTGN-----LDNNNAK  178 (221)
T ss_pred             hhCCHHHH--HHHHHHHHHhCCCCEEEEeCCCCc-----CCHHHHH
Confidence            34444433  345699999999999999999999     9987653

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.32  E-value=1.6e-06  Score=65.02  Aligned_cols=38  Identities=26%  Similarity=0.273  Sum_probs=30.1

Q ss_pred             cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..+|..  .-.-.|++++..+|.++++|||+.+     +|...+.
T Consensus       138 ~LSgG~--~qrv~laraL~~~p~llllDEPt~~-----LD~~~~~  175 (274)
T PRK13647        138 HLSYGQ--KKRVAIAGVLAMDPDVIVLDEPMAY-----LDPRGQE  175 (274)
T ss_pred             hCCHHH--HHHHHHHHHHHcCCCEEEEECCCcC-----CCHHHHH
Confidence            444433  4456699999999999999999999     9987653

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.32  E-value=2.4e-06  Score=59.99  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=28.8

Q ss_pred             cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ..++...  -.-.|++++..+|.++++|||+.+     +|....
T Consensus        97 ~LS~G~~--qrl~laral~~~p~llllDEP~~~-----LD~~~~  133 (180)
T cd03214          97 ELSGGER--QRVLLARALAQEPPILLLDEPTSH-----LDIAHQ  133 (180)
T ss_pred             cCCHHHH--HHHHHHHHHhcCCCEEEEeCCccC-----CCHHHH
Confidence            3444433  345699999999999999999999     887654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.32  E-value=8.6e-06  Score=59.41  Aligned_cols=39  Identities=23%  Similarity=0.373  Sum_probs=30.0

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++..  ...-.|++++..+|+++++|||+.+     +|....+
T Consensus       145 ~~LS~Ge--~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~  183 (228)
T PRK10584        145 AQLSGGE--QQRVALARAFNGRPDVLFADEPTGN-----LDRQTGD  183 (228)
T ss_pred             hhCCHHH--HHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHH
Confidence            3344433  3445699999999999999999999     9987653

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.32  E-value=3.5e-06  Score=58.38  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.+++++..+|+++.+|||+.+     +|...++
T Consensus        96 ~~~rv~laral~~~p~~lllDEPt~~-----LD~~~~~  128 (166)
T cd03223          96 EQQRLAFARLLLHKPKFVFLDEATSA-----LDEESED  128 (166)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCccc-----cCHHHHH
Confidence            34456699999999999999999999     9987653

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.32  E-value=9.3e-06  Score=61.33  Aligned_cols=38  Identities=18%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ..+++.  +.-.-.|++++..+|+++++|||+.+     +|...+
T Consensus       144 ~~LSgG--q~qrl~laral~~~p~lLlLDEPt~g-----LD~~~~  181 (287)
T PRK13641        144 FELSGG--QMRRVAIAGVMAYEPEILCLDEPAAG-----LDPEGR  181 (287)
T ss_pred             ccCCHH--HHHHHHHHHHHHcCCCEEEEECCCCC-----CCHHHH
Confidence            344443  34456699999999999999999999     998765

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.32  E-value=2.1e-06  Score=62.87  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.+...|+-++.++|+++++|||+..     +|..+|.
T Consensus       161 qRmraeLaaaLLh~p~VLfLDEpTvg-----LDV~aq~  193 (325)
T COG4586         161 QRMRAELAAALLHPPKVLFLDEPTVG-----LDVNAQA  193 (325)
T ss_pred             HHHHHHHHHHhcCCCcEEEecCCccC-----cchhHHH
Confidence            55678899999999999999999999     9988764

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.32  E-value=5.6e-06  Score=59.19  Aligned_cols=28  Identities=29%  Similarity=0.477  Sum_probs=24.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCceecCCCCC
Q 029077          159 NFEKPFLYLARKLAGDPNLHFVESPALA  186 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~~~~~~~~~~p~~~  186 (199)
                      |=++.+-+|++++..+|+++++|||+..
T Consensus       139 GGEQQMLAiaRALm~~PklLLLDEPs~G  166 (237)
T COG0410         139 GGEQQMLAIARALMSRPKLLLLDEPSEG  166 (237)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEecCCccC
Confidence            4466677899999999999999999998

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.32  E-value=1.1e-05  Score=60.31  Aligned_cols=37  Identities=27%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ..++..  .-.-.|++++..+|.++++|||+.+     +|....
T Consensus       160 ~LS~Gq--~qrv~lAral~~~p~illLDEPt~~-----LD~~~~  196 (269)
T cd03294         160 ELSGGM--QQRVGLARALAVDPDILLMDEAFSA-----LDPLIR  196 (269)
T ss_pred             cCCHHH--HHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHH
Confidence            444433  3445699999999999999999999     998765

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.32  E-value=4e-06  Score=68.67  Aligned_cols=32  Identities=28%  Similarity=0.460  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|+|++..++.++.+|||+.+     +|....
T Consensus       475 QrQRiaiARall~~~~iliLDE~TSa-----LD~~te  506 (529)
T TIGR02868       475 ERQRLALARALLADAPILLLDEPTEH-----LDAGTE  506 (529)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence            44456799999999999999999999     998654

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.31  E-value=1.6e-05  Score=57.34  Aligned_cols=38  Identities=21%  Similarity=0.177  Sum_probs=29.7

Q ss_pred             cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..++...+  .-.|++++..+|.+.++|||+.+     +|...+.
T Consensus       128 ~LS~G~~q--rl~laral~~~p~llllDEPt~~-----LD~~~~~  165 (213)
T TIGR01277       128 QLSGGQRQ--RVALARCLVRPNPILLLDEPFSA-----LDPLLRE  165 (213)
T ss_pred             cCCHHHHH--HHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHH
Confidence            44444333  46699999999999999999999     9987653

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.31  E-value=3e-06  Score=61.74  Aligned_cols=38  Identities=29%  Similarity=0.403  Sum_probs=29.6

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ...++..  .-.-.|++++..+|.++++|||+.+     +|....
T Consensus       144 ~~LS~G~--~qrv~laral~~~p~lllLDEPt~~-----LD~~~~  181 (228)
T cd03257         144 HELSGGQ--RQRVAIARALALNPKLLIADEPTSA-----LDVSVQ  181 (228)
T ss_pred             hhcCHHH--HHHHHHHHHHhcCCCEEEecCCCCC-----CCHHHH
Confidence            3344433  3446699999999999999999999     998764

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.31  E-value=3.8e-06  Score=64.64  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=30.9

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..++|...+  ...|++++..+|+++++|||+.+     +|...+.
T Consensus       160 ~~LSgG~~Q--Rv~IArAL~~~P~llilDEPts~-----LD~~~~~  198 (330)
T PRK09473        160 HEFSGGMRQ--RVMIAMALLCRPKLLIADEPTTA-----LDVTVQA  198 (330)
T ss_pred             ccCCHHHHH--HHHHHHHHHcCCCEEEEeCCCcc-----CCHHHHH
Confidence            344554444  45699999999999999999999     9987764

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.31  E-value=1.4e-05  Score=59.51  Aligned_cols=31  Identities=26%  Similarity=0.493  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .-.-.|++++..+|+++++|||+.+     +|....
T Consensus       154 ~qrv~laral~~~p~llllDEPt~~-----LD~~~~  184 (258)
T PRK14241        154 QQRLCIARAIAVEPDVLLMDEPCSA-----LDPIST  184 (258)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHH
Confidence            3446699999999999999999999     998764

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.31  E-value=1.2e-05  Score=62.47  Aligned_cols=39  Identities=23%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..++|..  .-.-.|++++..+|+++++|||+.+     +|....+
T Consensus       130 ~~LSgGq--kqRvalAraL~~~p~lllLDEPts~-----LD~~~~~  168 (354)
T TIGR02142       130 GRLSGGE--KQRVAIGRALLSSPRLLLMDEPLAA-----LDDPRKY  168 (354)
T ss_pred             hhCCHHH--HHHHHHHHHHHcCCCEEEEcCCCcC-----CCHHHHH
Confidence            3444443  4456699999999999999999999     9987653

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.31  E-value=7.3e-06  Score=64.12  Aligned_cols=32  Identities=31%  Similarity=0.461  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|....
T Consensus       154 q~QRVaLARAL~~~P~lLLLDEP~s~-----LD~~~r  185 (377)
T PRK11607        154 QRQRVALARSLAKRPKLLLLDEPMGA-----LDKKLR  185 (377)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence            45557799999999999999999999     998764

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.31  E-value=5.9e-06  Score=60.45  Aligned_cols=38  Identities=24%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ...++...+  .-.|++++..+|.++++|||+.+     +|...+
T Consensus       128 ~~LS~G~~q--rv~laral~~~p~lllLDEP~~g-----LD~~~~  165 (232)
T PRK10771        128 GQLSGGQRQ--RVALARCLVREQPILLLDEPFSA-----LDPALR  165 (232)
T ss_pred             ccCCHHHHH--HHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence            345544444  45699999999999999999999     998765

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.31  E-value=1.6e-05  Score=57.82  Aligned_cols=38  Identities=24%  Similarity=0.146  Sum_probs=29.6

Q ss_pred             cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..++...  -.-.+++++..+|.++++|||+.+     +|...++
T Consensus       124 ~LS~G~~--~rv~laral~~~p~llllDEP~~~-----LD~~~~~  161 (223)
T TIGR03740       124 QFSLGMK--QRLGIAIALLNHPKLLILDEPTNG-----LDPIGIQ  161 (223)
T ss_pred             hCCHHHH--HHHHHHHHHhcCCCEEEECCCccC-----CCHHHHH
Confidence            3444433  345699999999999999999999     9987653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.31  E-value=1.2e-05  Score=59.16  Aligned_cols=39  Identities=26%  Similarity=0.316  Sum_probs=30.2

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++...+  .-.|++++..+|.++++|||+.+     +|....+
T Consensus       135 ~~LS~G~~q--rl~la~al~~~p~llllDEP~~~-----LD~~~~~  173 (239)
T cd03296         135 AQLSGGQRQ--RVALARALAVEPKVLLLDEPFGA-----LDAKVRK  173 (239)
T ss_pred             hhCCHHHHH--HHHHHHHHhcCCCEEEEcCCccc-----CCHHHHH
Confidence            344444434  45699999999999999999999     9987653

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.30  E-value=1.6e-06  Score=61.16  Aligned_cols=33  Identities=36%  Similarity=0.492  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHh------CCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLA------GDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~------~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ++....+++.+.      ..++++++|||+..     +|+.+|.
T Consensus       140 EqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa-----LDi~HQ~  178 (259)
T COG4559         140 EQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA-----LDIAHQH  178 (259)
T ss_pred             HHHHHHHHHHHHHccCCCCCCceEEecCCccc-----cchHHHH
Confidence            455566777774      45578899999999     9999986

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.30  E-value=1.9e-06  Score=63.45  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +...-.|++++..+|+++++|||+.+     +|...+.
T Consensus       148 e~qrv~laral~~~p~~lllDEPt~~-----LD~~~~~  180 (242)
T TIGR03411       148 QKQWLEIGMLLMQDPKLLLLDEPVAG-----MTDEETE  180 (242)
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCccC-----CCHHHHH
Confidence            34446699999999999999999999     9987653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=1.1e-05  Score=59.88  Aligned_cols=39  Identities=26%  Similarity=0.289  Sum_probs=30.2

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..++|...+  .-.|++++..+|.++++|||+.+     +|...++
T Consensus       127 ~~LSgGq~q--rl~laral~~~p~lllLDEPt~~-----LD~~~~~  165 (255)
T PRK11248        127 WQLSGGQRQ--RVGIARALAANPQLLLLDEPFGA-----LDAFTRE  165 (255)
T ss_pred             hhCCHHHHH--HHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHH
Confidence            444544444  45699999999999999999999     9987653

>PRK14974 cell division protein FtsY; Provisional

Probab=98.30  E-value=1.4e-06  Score=66.74  Aligned_cols=95  Identities=13%  Similarity=0.000  Sum_probs=55.1

Q ss_pred             EEEEEEEeCCCccccccc-c---ccc--ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc
Q 029077           61 KIRFYCWDTAGQEKFGGL-R---DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~-~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~  134 (199)
                      ++.+.++||+|....... .   ..+  ..+.+..++|.|++....   .......+...  -..--++.||.|.....-
T Consensus       222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~--~~~~giIlTKlD~~~~~G  296 (336)
T PRK14974        222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA--VGIDGVILTKVDADAKGG  296 (336)
T ss_pred             CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc--CCCCEEEEeeecCCCCcc
Confidence            356899999996542221 1   111  235788899999876532   22222222221  122357789999865322


Q ss_pred             cHHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077          135 KAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                        .....+...+.++.+++  +|.+++++.
T Consensus       297 --~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        297 --AALSIAYVIGKPILFLG--VGQGYDDLI  322 (336)
T ss_pred             --HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence              23444555688887776  688886654

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=1.2e-05  Score=60.88  Aligned_cols=39  Identities=18%  Similarity=0.229  Sum_probs=30.4

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++.  +.-.-.|++++..+|+++++|||+.+     +|...+.
T Consensus       144 ~~LSgG--q~qrv~lAraL~~~P~llllDEPt~~-----LD~~~~~  182 (290)
T PRK13634        144 FELSGG--QMRRVAIAGVLAMEPEVLVLDEPTAG-----LDPKGRK  182 (290)
T ss_pred             ccCCHH--HHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHH
Confidence            344443  34456699999999999999999999     9987653

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=1e-05  Score=61.14  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++..+|.++++|||+.+     +|..++
T Consensus       149 qkqrvaiA~aL~~~p~illLDEPt~g-----LD~~~~  180 (288)
T PRK13643        149 QMRRVAIAGILAMEPEVLVLDEPTAG-----LDPKAR  180 (288)
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCccC-----CCHHHH
Confidence            34456699999999999999999999     998765

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.30  E-value=5.5e-06  Score=64.39  Aligned_cols=37  Identities=24%  Similarity=0.280  Sum_probs=29.7

Q ss_pred             cCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .++|.  +.-.-.|++++..+|.++++|||+.+     +|....
T Consensus       129 ~LSGG--q~QRV~lARAL~~~p~iLLlDEP~sa-----LD~~~r  165 (363)
T TIGR01186       129 ELSGG--MQQRVGLARALAAEPDILLMDEAFSA-----LDPLIR  165 (363)
T ss_pred             hCCHH--HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHH
Confidence            44444  34456799999999999999999999     998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	199
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		6e-91
1byu_A	216	Canine Gdp-Ran Length = 216		3e-89
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-88
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-88
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-88
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		4e-88
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		8e-88
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-87
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-87
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-87
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		3e-87
3icq_B	171	Karyopherin Nuclear State Length = 171		3e-83
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		3e-83
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-82
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-81
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-81
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		3e-81
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		1e-43
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		6e-27
1vg1_A	185	Gdp-bound Rab7 Length = 185		6e-27
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		1e-26
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		4e-26
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-23
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		3e-23
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		3e-23
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		4e-23
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		2e-22
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		2e-22
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		3e-22
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		4e-22
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		4e-22
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		4e-22
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		5e-22
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		5e-22
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		5e-22
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		6e-22
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		6e-22
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		7e-22
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		8e-22
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-21
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-21
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-21
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-21
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-21
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-21
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-21
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		3e-21
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		3e-21
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		3e-21
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		7e-21
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		7e-21
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-20
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		1e-20
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-20
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-20
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-20
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-20
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-20
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		3e-20
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		4e-20
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		5e-20
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		6e-20
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		9e-20
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		9e-20
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-19
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-19
4fmc_B	171	Espg-Rab1 Complex Length = 171		1e-19
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-19
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-19
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		1e-19
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-19
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-19
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-19
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		2e-19
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-19
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		4e-19
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		4e-19
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		4e-19
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		4e-19
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		6e-19
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		6e-19
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		7e-19
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		7e-19
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		8e-19
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-18
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-18
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-18
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-18
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-18
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		3e-18
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-18
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		3e-18
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-18
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-18
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		3e-18
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		3e-18
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		4e-18
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		4e-18
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		4e-18
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		5e-18
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		5e-18
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		5e-18
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		6e-18
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		6e-18
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		6e-18
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		7e-18
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		8e-18
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		8e-18
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		9e-18
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		9e-18
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-17
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-17
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-17
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-17
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		4e-17
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		4e-17
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		7e-17
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-16
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		2e-16
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-16
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-16
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		5e-16
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		5e-16
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		6e-16
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		7e-16
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		9e-16
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-15
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-15
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-15
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-15
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-15
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		5e-15
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		7e-15
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		8e-15
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		9e-15
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		1e-14
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		1e-14
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-14
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-14
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-14
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-14
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-14
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-14
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		3e-14
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-14
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		3e-14
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-14
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-14
4fmc_F	117	Espg-Rab1 Complex Length = 117		4e-14
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		6e-14
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		6e-14
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		9e-14
1mh1_A	186	Small G-Protein Length = 186		1e-13
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-13
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-13
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		2e-13
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		2e-13
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-13
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-13
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		4e-13
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		4e-13
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		4e-13
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		5e-13
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		5e-13
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		5e-13
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		5e-13
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-13
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		5e-13
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		7e-13
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-12
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-12
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-12
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-12
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		3e-12
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-12
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-12
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		3e-12
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-12
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-12
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		4e-12
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		4e-12
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		5e-12
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		6e-12
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		9e-12
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-11
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-11
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-11
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		1e-11
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		1e-11
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-11
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-11
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-11
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-11
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-11
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-11
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-11
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		3e-11
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-11
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-11
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		4e-11
1wq1_R	166	Ras-Rasgap Complex Length = 166		4e-11
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-11
4q21_A	189	Molecular Switch For Signal Transduction: Structura		4e-11
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		4e-11
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		5e-11
6q21_A	171	Molecular Switch For Signal Transduction: Structura		5e-11
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		5e-11
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		7e-11
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		7e-11
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		7e-11
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		7e-11
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		8e-11
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		8e-11
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		9e-11
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		9e-11
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		1e-10
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		1e-10
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		1e-10
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-10
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		1e-10
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		1e-10
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-10
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-10
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-10
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-10
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-10
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-10
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-10
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-10
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		3e-10
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-10
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		3e-10
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		4e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		4e-10
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		4e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		5e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		5e-10
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		5e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		5e-10
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		5e-10
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		5e-10
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-10
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		5e-10
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		5e-10
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		6e-10
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		6e-10
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		6e-10
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		6e-10
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		6e-10
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		6e-10
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		7e-10
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		7e-10
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		8e-10
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		9e-10
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-09
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-09
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-09
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		2e-09
2kb0_A	178	Cdc42(T35a) Length = 178		2e-09
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-09
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-09
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		2e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		3e-09
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		4e-09
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		5e-09
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		6e-09
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		8e-08
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-07
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		1e-07
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-07
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-07
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-07
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		8e-07
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		9e-07
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		9e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-06
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-06
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-06
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-06
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		3e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		7e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		7e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		8e-06
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-05
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-05
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		9e-05
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		1e-04
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		2e-04
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		2e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-04
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		2e-04
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-04
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		4e-04
3dpu_A	535	Roccor Domain Tandem Of Rab Family Protein (Roco) L		4e-04
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		4e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		5e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		5e-04
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		5e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		6e-04
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		6e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		7e-04
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		7e-04
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		8e-04
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		8e-04
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		9e-04

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score =  329 bits (844), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 153/184 (83%), Positives = 168/184 (91%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDT
Sbjct: 9   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 68
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
           AG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct: 69  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 128
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189
           K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPE
Sbjct: 129 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPE 188
Query: 190 VQID 193
           VQ+D
Sbjct: 189 VQVD 192

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  323 bits (829), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 154/186 (82%), Positives = 166/186 (89%), Gaps = 2/186 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY PT+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 190
Query: 194 --LAAQ 197
             LAAQ
Sbjct: 191 PALAAQ 196

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score =  321 bits (822), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/186 (82%), Positives = 165/186 (88%), Gaps = 2/186 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct: 136 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 195
Query: 194 --LAAQ 197
             LAAQ
Sbjct: 196 PALAAQ 201

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score =  321 bits (822), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/186 (82%), Positives = 165/186 (88%), Gaps = 2/186 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 190
Query: 194 --LAAQ 197
             LAAQ
Sbjct: 191 PALAAQ 196

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score =  321 bits (822), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/188 (81%), Positives = 166/188 (88%), Gaps = 2/188 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct: 124 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 183
Query: 194 --LAAQQQ 199
             LAAQ +
Sbjct: 184 PALAAQYE 191

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score =  320 bits (819), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 152/186 (81%), Positives = 165/186 (88%), Gaps = 2/186 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           K+GGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 190
Query: 194 --LAAQ 197
             LAAQ
Sbjct: 191 PALAAQ 196

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score =  319 bits (817), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 152/186 (81%), Positives = 164/186 (88%), Gaps = 2/186 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGL DGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 190
Query: 194 --LAAQ 197
             LAAQ
Sbjct: 191 PALAAQ 196

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score =  318 bits (815), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 152/188 (80%), Positives = 165/188 (87%), Gaps = 2/188 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 190
Query: 194 --LAAQQQ 199
             LAAQ +
Sbjct: 191 PALAAQYE 198

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score =  318 bits (815), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 152/186 (81%), Positives = 164/186 (88%), Gaps = 2/186 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGE EKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct: 136 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 195
Query: 194 --LAAQ 197
             LAAQ
Sbjct: 196 PALAAQ 201

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score =  318 bits (815), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 152/186 (81%), Positives = 164/186 (88%), Gaps = 2/186 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  P LAPPEV +D
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAPPEVVMD 190
Query: 194 --LAAQ 197
             LAAQ
Sbjct: 191 PALAAQ 196

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score =  317 bits (811), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 152/186 (81%), Positives = 163/186 (87%), Gaps = 2/186 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAII FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV  D
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAPPEVVXD 190
Query: 194 --LAAQ 197
             LAAQ
Sbjct: 191 PALAAQ 196

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score =  304 bits (778), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 156/171 (91%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDT
Sbjct: 1   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
           AG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct: 61  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 120
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct: 121 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 171

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score =  303 bits (777), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 156/171 (91%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDT
Sbjct: 2   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 61
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
           AG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct: 62  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 121
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct: 122 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 172

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score =  301 bits (771), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 141/167 (84%), Positives = 152/167 (91%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY PT+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 177

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score =  298 bits (764), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 140/170 (82%), Positives = 151/170 (88%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 132
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 183
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  P
Sbjct: 133 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score =  297 bits (761), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 140/170 (82%), Positives = 151/170 (88%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 126
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 183
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  P
Sbjct: 127 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score =  297 bits (760), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 139/166 (83%), Positives = 150/166 (90%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 130
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 179
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL F
Sbjct: 131 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 176

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score =  172 bits (435), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 87/191 (45%), Positives = 123/191 (64%), Gaps = 4/191 (2%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAG 71
           ++K+ ++GDGG GKTT++ R L G FEK Y  T+G   HP+ F  + G  I+F  WDTAG
Sbjct: 11  TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVK 130
           QEK   L+D YYI    AI+ FDVT+R+T +N+  W ++   V  N  PIV+C NK+D+K
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 131 NRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 188
           NRQ  +K++     + KN +Y+EISAK+ +NF  PFL+LAR   G P+L FV +  L P 
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPT 190
Query: 189 EVQIDLAAQQQ 199
           EV  D  + ++
Sbjct: 191 EVNYDYHSPEE 201

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           ++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  117 bits (292), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           ++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            +NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct: 129 FENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAG E
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           ++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Query: 3   LPNQQTVDYP-SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           +P     DY   FK+V++G+ G GKT  V+R   G F      TIGV+        N  K
Sbjct: 15  VPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 74
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPI 120
           ++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +   N +  
Sbjct: 75  VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVIT 134
Query: 121 VLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175
           VL GNK+D+  R+  ++Q    F   +++ Y E SAK + N EK FL LA +L  + 
Sbjct: 135 VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N 
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V+ ++   +   N L + E SAK+  N    FL +A+KL
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQ
Sbjct: 5   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD---- 128
           E+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L  NK+D    
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 129 --VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
             +KN + +       ++  L++Y  S K + N  + F YLA K
Sbjct: 125 SCIKNEEAEG----LAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  104 bits (259), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 7/165 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK D
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131
Query: 129 VKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171
           +K RQV  ++     K N    Y+E SAK + N    F    R++
Sbjct: 132 IKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L    + NI I+L GNK D+++ 
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K NL + E SA  + N E+ F
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 159

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 7/165 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK+D
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 129 VKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171
           +  RQV  ++     + N    Y+E SAK   N    F    R++
Sbjct: 128 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+ + 
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++          E+ P V+ GNK+D
Sbjct: 70  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 129
Query: 129 VKNRQVKAKQVTFHRKKNLQ--YYEISAKSNYNFEKPFLYLARKL 171
           +  RQV  ++     + N    Y+E SAK   N    F    R++
Sbjct: 130 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 100/188 (53%), Gaps = 9/188 (4%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++  
Sbjct: 4   SETYDFL-FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCG 124
            WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D      +NI I+LCG
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Query: 125 NKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVES 182
           NK D+  +R+V   + + F ++  L + E SA +  N E+ F+  ARK+     L+ +ES
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI-----LNKIES 177
Query: 183 PALAPPEV 190
             L P  +
Sbjct: 178 GELDPERM 185

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 99.8 bits (247), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F  +A+KL
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 12/166 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGD   GKT  V+R  TG F ++   TIGV+           +++   WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR 132
           +F  +   YY     AI+ +D+T R ++ +VP W  D+ +    NI  +L GNK D+   
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS-- 147
Query: 133 QVKAKQVTFHRKKNL-QYYEI------SAKSNYNFEKPFLYLARKL 171
             + ++V+    ++L ++Y+I      SAK + N E+ FL +A +L
Sbjct: 148 --ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV++GD G GK++ V R +  +F +  E TIG          N   ++F  WDTAGQE+
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-R 132
           +  L   YY     AII+FDVT + +++    W ++L  +   N+ + L GNK D+ + R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 133 QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V A+   T+ ++  L + E SAK+  N ++ F  +AR+L
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L    + NI I+L GNK D+++ 
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+I+GD G GK++ + R     F   Y  TIGV+        N  K++   WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +F  +   YY      I+++DVT+  ++ NV  W  ++ + C+++  +L GNK D   R+
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERK 129
Query: 134 VKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 164
           V   +    F  +  +Q +E SAK N N E+ F
Sbjct: 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L    + NI I+L GNK D+++ 
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 8/180 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +++G  GTGK+  + + +  +F++    TIGVE            ++   WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
           +F  +   YY     A++++D+T+R TY ++  W  D   +   NI ++LCGNK D+   
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 190
           R+V   + + F ++  L + E SA +  N E+ FL  AR +     L+ ++S  L P  +
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDPERM 200

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TI           +   ++F  WDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+ + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 8   LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V  R +++N+  W ++          E+ P V+ GNKVD
Sbjct: 68  RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            ++RQV  +  Q       +  Y E SAK + N    F    R++
Sbjct: 128 KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+ + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 3/179 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAGQ
Sbjct: 15  TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVK 130
           E+F  L   YY   Q  I+++DVT R T+  +  W  +L   C    IV  L GNK+D +
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKE 134
Query: 131 NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 188
           NR+V   + + F RK +  + E SAK+    +  F  L  K+   P L   E+    P 
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPS 193

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S KLV++G+   GK++ V R ++ +F +  EPTIG          N   ++F  WDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDV-- 129
           E+F  L   YY + Q A++++DVT   ++     W ++L  +  ++I I L GNK+D   
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 130 ---KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              + +  + +      +K L ++E SAK+  N    FL +  K+
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L    + NI I+L GNK D+++ 
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L    + NI I+L GNK D+++ 
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 129 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 4/169 (2%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++  
Sbjct: 5   SETYDFL-FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 63
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCG 124
            WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D      +NI I+LCG
Sbjct: 64  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 123
Query: 125 NKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK D+  +R+V   + + F ++  L + E SA +  + E+ F+  ARK+
Sbjct: 124 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR 132
            F  +   YY     A++++D+T R T+ ++ TW  D  +    N+ I+L GNK D+++R
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130
Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +   K+    F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L    + NI I L GNK D+++ 
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L    + NI I L GNK D+++ 
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + +Y NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 130 KVVDNTTAKE--FADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + +Y NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 130 KVVDNTTAKE--FADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     IR   WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 169

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 11/165 (6%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV +G+   GKT+ + R     F+  Y+ TIG++      + + G +R   WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKNR 132
           +F  L   Y      AI+++D+T R +++N   W +D L    +++ I L GNK D+ + 
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD- 120
Query: 133 QVKAKQVTFH------RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               ++VT+       ++ N  ++E SAK+ +N +  F   A KL
Sbjct: 121 ---LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   ++     W  D+      ++ I+L GNK D+ + 
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 137 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 127 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++  
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135
Query: 132 RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V   +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 136 RDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+++R
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 133 Q-VKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           + VK ++   F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 127 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 12/185 (6%)
Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYC 66
           +T DY  FKL+++GD G GKT  + R     F   +  TIG++        +  +I+   
Sbjct: 3   KTYDYL-FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61
Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN 125
           WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GN
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
Query: 126 KVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 179
           K DV ++    +QV+  R + L      ++ E SAK+N N E  F  LAR +    + ++
Sbjct: 122 KCDVNDK----RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNW 177
Query: 180 VESPA 184
             + A
Sbjct: 178 KATAA 182

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 4/169 (2%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++  
Sbjct: 2   SETYDFL-FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 60
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCG 124
            WDTAG E+F  +   YY     A++++D+T+R TY  +  W  D      +NI I+LCG
Sbjct: 61  IWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 120
Query: 125 NKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK D+  +R+V   + + F ++  L + E SA +  + E+ F+  ARK+
Sbjct: 121 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 146 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 4/155 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQ 72
           FK+V++GD G GK+  + R    EF  + + TIGVE         N   I+   WDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN 131
           E++  +   YY     A++++D+T + +++N+  W ++L    + NI I+L GNK D+K+
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 132 -RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPF 164
            R +     T + +K+ L + E SA    N E  F
Sbjct: 128 LRVINDNDATQYAKKEKLAFIETSALEATNVELAF 162

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK   + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 137 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 14/162 (8%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRF 64
           KL+ +GD G GKTTF+ R+   +F  K+  T+G++        N            K+  
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
             WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IVL
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146
Query: 123 CGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 162
            GNK D+ + R+V  +Q      K  + Y+E SA +  N EK
Sbjct: 147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     +   Y  TIGV+            ++   WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      II++DVT R ++ NV  W +++ R   EN+  +L GNK D+ ++
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 133 QVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V              +++ E SAK+ YN E+ F  +A ++
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 9/188 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     IR   WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 190
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G      +ES      E 
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG------MESTQDRSRED 187
Query: 191 QIDLAAQQ 198
            ID+  ++
Sbjct: 188 MIDIKLEK 195

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 94/188 (50%), Gaps = 9/188 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 190
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G      +ES      E 
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG------MESTQDRSRED 180
Query: 191 QIDLAAQQ 198
            ID+  ++
Sbjct: 181 MIDIKLEK 188

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF    + TIGVE           +I+   WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN- 131
           ++  +   YY     A+I++D++   +Y+N   W  +L     +N+ + L GNK D+ + 
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167
           R V  ++  TF ++  L + E SA ++ N +K F  L
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 9   VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
           +DY  FKL+++GD G GKT  + R     F   +  TIG++        +  +I+   WD
Sbjct: 3   MDYL-FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61
Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKV 127
           TAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GNK 
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 121
Query: 128 DVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 171
           DV ++    +QV+  R + L      ++ E SAK+N N E  F  LAR +
Sbjct: 122 DVNDK----RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 7/162 (4%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQ 133
           F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  ++
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 134 V----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 121 VVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNR 132
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ ++
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 133 QVKAKQVTF----HRKKNLQ--YYEISAKSNYNFEKPFLYLARKL 171
               +Q+T      R K L   + E SAK+ YN ++ F  +A  L
Sbjct: 123 ----RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDTAGQ 
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++  
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 150
Query: 132 RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V   +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 151 RDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 179

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 89.7 bits (221), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 6/163 (3%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G GG GK+    + + G F +KY+PTI  + +      +C +      DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   E++P++L GNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 132 RQVKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K+   +  +   N  + E SAKS  N  + F  L R++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 90/163 (55%), Gaps = 14/163 (8%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKT+ ++R     F +  + T+GV+           KIR   WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-N 131
           +F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + +
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146
Query: 132 RQVK-------AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
           R++        A+Q+T      +++ E SAK N+N ++ FL L
Sbjct: 147 REITRQQGEKFAQQIT-----GMRFCEASAKDNFNVDEIFLKL 184

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK+V++G+G  GKT+ V R+   +F  K+  T+G             ++    WDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDV-K 130
           E+F  L   YY     AI+++D+T   +++ V  W ++L ++  N I + + GNK+D+ K
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L G K D+  +
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 129 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F   A ++
Sbjct: 154 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Query: 3   LPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI 62
           +P     DY  FKL+++G+ G GK+  + R     +   Y  TIGV+        +   +
Sbjct: 12  VPRGSEYDYL-FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV 70
Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-V 121
           +   WDTAGQE+F  +   YY      II++DVT + ++  V  W +++ R   +  + +
Sbjct: 71  KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL 130
Query: 122 LCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D+K+++V    V   F     + + E SA  + N E  FL +AR++
Sbjct: 131 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 6/163 (3%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G GG GK+    + + G F  +Y+PTI  + +      +C +      DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   E++P++L GNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 132 RQVKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K+   +  +   N  + E SAKS  N  + F  L R++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 14/163 (8%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRF 64
           KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
             WDTAG E+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 123 CGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163
            GNK D+ + R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNR 132
           ++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ 
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
           +V    + +Q+  H     +++E SAK N N ++ F
Sbjct: 126 RVVSSERGRQLADHL--GFEFFEASAKDNINVKQTF 159

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 78
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 66
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 88/167 (52%), Gaps = 12/167 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-RFYCWDTAGQ 72
            K++I+GD G GKT+ + R++  ++ ++Y+ TIG +    +   +  K+     WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI------PIVLCGNK 126
           E+F  L   +Y    C ++++DVT   +++N+ +W RD   V  N+      P V+ GNK
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSW-RDEFLVHANVNSPETFPFVILGNK 127
Query: 127 VDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           +D +  +     K+ Q       ++  +  SAK+  N +  F  +AR
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 127
Query: 133 QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 165

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           +FK+++VGD G GKT  + R   G F    +  T+G++        +  K++   WDTAG
Sbjct: 10  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK 130
           QE+F  +   YY      ++++DVT + ++ N+  W  ++    + ++ ++L GNKVD  
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 131 NRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           + +V  ++      ++  L + E SAK+  N +  F  +A++L
Sbjct: 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++G+ G GKT  + R    EF      TIGVE            ++   WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A+++FD+T   TY  V  W ++L    E  I ++L GNK D+   
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R+V  ++   F     L + E SA  + N E  F
Sbjct: 131 REVPTEEARMFAENNGLLFLETSALDSTNVELAF 164

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++G+ G GKT  + R    EF      TIGVE            ++   WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A+++FD+T   TY  V  W ++L    E  I ++L GNK D+   
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R+V  ++   F     L + E SA  + N E  F
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAF 179

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++G+ G GK+  + R     +   Y  TIGV+        +   ++   WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNR 132
           +F  +   YY      II++DVT + ++  V  W +++ R   +  + +L GNK D+K++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V    V   F     + + E SA  + N E  FL +AR++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++D+T   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123
Query: 133 QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 87.0 bits (214), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++      + N+ Y E SAK+  N +K F  L R++
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 74
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 140
Query: 133 QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++G+ G GK+  + R     +   Y  TIGV+        +   ++   WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNR 132
           +F  +   YY      II++DVT + ++  V  W +++ R   +  + +L GNK D+K++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V    V   F     + + E SA  + N E  FL +AR++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 14/164 (8%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIR 63
            KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+ 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              WDTAG E+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 122 LCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163
           L GNK D+ + R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK+V++G+G  GKT+ V R+   +F  K+  T+              ++    WDTAGQ
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDV-K 130
           E+F  L   YY     AI+++D+T   +++ V  W ++L ++  N I + + GNK+D+ K
Sbjct: 80  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 139
Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 140 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R  T EF  + + TIGVE           KI+   WDTAG E
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN- 131
           ++  +   YY     A+I++D++   +Y+N   W  +L     +N+ + L GNK D+ + 
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  +  + + E SA ++ N +K F
Sbjct: 131 RAVPTDEAKNFAMENQMLFTETSALNSDNVDKAF 164

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK+V++G+G  GKT+ V R+   +F  K+  T+              ++    WDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDV-K 130
           E+F  L   YY     AI+++D+T   +++ V  W ++L ++  N I + + GNK+D+ K
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQ 133
           F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D + R 
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 134 VKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G GG GK+    + + G F +KY+PTI  + +      +  +      DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 132 RQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQ 133
           F  +   YY      I+++D+T   T+ N+  W + +     +   ++L GNK D + R 
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 134 VKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           ++K+V+ GD   GK++F+ R    EF +    T+GV+        +  +     WDTAGQ
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN 131
           E+F  +   Y+      ++++DVT   ++ N+  W   +     E +PI+L GNK D+++
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147
Query: 132 RQVKAKQVT----FHRKKNLQY----YEISAKSNYNFEKPFLYLARKL 171
                 Q      F  K  + Y     E SAK   N  +  L+LAR++
Sbjct: 148 TAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 66
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRF 64
           KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
             WDTAG E+F  L   ++      ++ FD+T++ ++ NV  W   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 123 CGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163
            GNK D+ + R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRF 64
           KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
             WDTAG E+F  L   ++      ++ FD+T++ ++ NV  W   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 123 CGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163
            GNK D+ + R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 17/181 (9%)
Query: 5   NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF 64
           +QQ  +    KLVIVGDG  GKT  +  +  G+F + Y PT+  E +  D   +  ++  
Sbjct: 2   SQQVGNSIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVEL 60
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLC 123
             WDTAGQE +  LR   Y      +I F +    + +NV   W  ++   C+ +PI+L 
Sbjct: 61  ALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILV 120
Query: 124 GNKVDVKN--------RQVKAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPFLYLA 168
           G KVD++N        RQ   + VT    +++        YYE SAK+ Y   + F    
Sbjct: 121 GCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAAT 180
Query: 169 R 169
           R
Sbjct: 181 R 181

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 10/167 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 74  KF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDV 129
           +F   +   YY +    + ++D+T   ++ ++P W  + C+   +  +IP +L GNK D+
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDL 139
Query: 130 KNR-QVKAKQV-TFHRKKNLQYYEISAKS---NYNFEKPFLYLARKL 171
           ++  QV       F    ++  +E SAK+   N + E  F+ LA KL
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 6/163 (3%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G  G GK+    + + G F +KY+PTI  + +      +  +      DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 64
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 132 RQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+V+VGDGG GKT+ +     G F + Y PT+  E + ++       +  + WDTAGQ
Sbjct: 34  SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           + +  LR  +Y      ++ FDVT+  ++ N+   W+ ++   C+ +PI++ G K D++ 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                   R+   + VT+HR + +        Y E SA+ + N    F
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 7/159 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNR 132
           ++  +   YY      I+ +D+T   ++  V  W   +     +N  ++L GNK D ++ 
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
           +V    + +Q+  H     +++E SAK N N ++ F  L
Sbjct: 129 RVVSSERGRQLADHL--GFEFFEASAKDNINVKQTFERL 165

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
           Q   DY  FKL+I+G+   GKT+F+ R+    F   +  T+G++      + +  +++  
Sbjct: 17  QGNFDYM-FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQ 75
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCG 124
            WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L G
Sbjct: 76  IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135
Query: 125 NKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
           NK D++  +V    K      +    ++E SAK N +  + F
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 131
           +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D++ 
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 132 -RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
            RQV  ++     ++  +QY E SAK+  N +K F  L R++
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 63
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 131
           +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D++ 
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 132 -RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
            RQV  ++     ++  +QY E SAK+  N +K F  L R++
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++G+   GKT+F+ R+    F   +  T+G++      + +  +I+   WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNR 132
           ++  +   YY      ++M+D+  + ++  V  W   +     +N  ++L GNK D+++ 
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 133 QVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPF 164
           +V   +       +L  +++E SAK N N ++ F
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K+ ++GD G GK++ V R +   F+    PTIG               +F  WDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN- 131
           +F  L   YY     AII++D+T   T+  +  W R+L +    +I + + GNK D+ + 
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R+V  +    +    +  + E SAK+  N  + F+ ++R++
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---CGKI--RFYCWD 68
            K+ ++GD G GK++ V R +   F+    PTIG       F T    CG    +F  WD
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCGNELHKFLIWD 78
Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127
           TAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK 
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 128 DVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D+ + R+V  K    +         E SAK+  N E+ F  ++R++
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 74  KF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDV 129
           +F   +   YY +    + ++D T   ++ ++P W  + C+   +  +IP +L GNK D+
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDL 148
Query: 130 KNR-QVKAKQV-TFHRKKNLQYYEISAKS---NYNFEKPFLYLARKL 171
           ++  QV       F    +   +E SAK+   N + E  F  LA KL
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH----------PLDFFTNCGKIRF 64
           K + +GD G GKT+ + ++  G+F  K+  T+G++            P        +I  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVL 122
             WDTAG E+F  L   ++      +++FD+T   ++ NV  W   L      EN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 123 CGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 159
           CGNK D+++ R VK ++      K  + Y+E SA +  N
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTN 171

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQYYEISAKSN 157
              +++   +++ ++  E    +N
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMAN 149

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 134 VKAKQVTFHRKKNLQYYEISAKSN 157
              +++   +++ ++  E    +N
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMAN 147

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 134 VKAKQVTFHRKKNLQYYEISAKSN 157
              +++   +++ ++  E    +N
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMAN 147

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K+ ++GD G GK++ + R +   F+    PTIG               +F  WDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN- 131
           +F  L   YY     AII++D+T   T+  +  W R+L +    +I + + GNK D+ + 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R+V  +    +    +  + E SAK+  N  + F+ ++R++
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 129
Query: 134 VKAKQVTFHRKKNLQYYEISAKSN 157
              +++   +++ ++  E    +N
Sbjct: 130 HTRRELAKMKQEPVKPEEGRDMAN 153

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 134 VKAKQVTFHRKKNLQYYEISAKSN 157
              +++   +++ ++  E    +N
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMAN 150

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 134 VKAKQVTFHRKKNLQYYEISAKSN 157
              +++   +++ ++  E    +N
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMAN 151

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 39/198 (19%)
Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG------------------------ 47
            S+K V++G+   GK++ V R     F +    TIG                        
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 48  -------------VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94
                        +     ++  N   I+F  WDTAGQE++  +   YY    CAI++FD
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 95  VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEIS 153
           ++   T     TW   L ++  N  I+L  NK+D    QV   +V  + +  NL + + S
Sbjct: 126 ISNSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 154 AKSNYNFEKPFLYLARKL 171
           AK+  N +  F  LA ++
Sbjct: 185 AKTGTNIKNIFYMLAEEI 202

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           L+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+F
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 76  GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV 129
             +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++  +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 125
Query: 134 VKAKQVTFHRKKNLQYYEISAKSN 157
              +++   +++ ++  E    +N
Sbjct: 126 HTRRELAKMKQEPVRSEEGRDMAN 149

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 2/144 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 134 VKAKQVTFHRKKNLQYYEISAKSN 157
              +++   +++ ++  E    +N
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMAN 152

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 74/144 (51%), Gaps = 2/144 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++  +
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145
Query: 134 VKAKQVTFHRKKNLQYYEISAKSN 157
              +++   +++ ++  E    +N
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMAN 169

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 124 DKDTIEKLKEKKLT 137

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 7   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 66  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 125
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 126 DKDTIEKLKEKKLT 139

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGD   GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGD   GKT  +      +F   Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +   R   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQYYE 151
             A+++   +++ ++  E
Sbjct: 126 HTARELAKMKQEPVKPAE 143

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGDG  GKT  +      EF + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F V +  + +N+P  W  ++   C N+PI+L  NK D+++ +
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 13  AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 131
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 132 DKDTIEKLKEKKLT 145

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 22  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 140
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 141 DKDTIEKLKEKKLT 154

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 149 DKDTIEKLKEKKLT 162

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +Y+NV   W  ++   C + PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++     N+PI+L GNK D++  +
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDE 145
Query: 134 VKAKQVTFHRKKNLQYYEISAKSN 157
              +++   +++ ++  E    +N
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMAN 169

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 15/165 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V VGDG  GKT  +  + +  F   Y PT+  +    +   N   +    WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGATVNLGLWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR 132
            +  LR   Y      I+ F + ++ +Y+NV   W  +L      +PIVL G K+D+++ 
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127
Query: 133 Q---------VKAKQVTFHRKKNL----QYYEISAKSNYNFEKPF 164
           +         V    V     K L     Y E S+KS  N +  F
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T     +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 149 DKDTIEKLKEKKLT 162

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GK   +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 10  AIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 128
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 129 DKDTIEKLKEKKLT 142

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG 
Sbjct: 6   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 124
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 125 DKDTIEKLKEKKLT 138

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-----RFYCWDTAGQEKFGGLRD 80
           K+    + +   F   Y+PTI       D +T    +     R    DTAGQE+FG +R+
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIE------DSYTKICSVDGIPARLDILDTAGQEEFGAMRE 75
Query: 81  GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQV-KA 136
            Y   G   +++F +  R ++  V      + RV   ++ P+VL GNK D+++ RQV ++
Sbjct: 76  QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRS 135
Query: 137 KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +   F    ++ Y+E SAK   N ++ F  L R +
Sbjct: 136 EASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C + PI+L G K+D+++
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 122
Query: 132 --------RQVKAKQVTF-------HRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
                   R  K   +T+           +++Y E SA +    +  F    R + G
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C + PI+L G K+D+++
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 122
Query: 132 --------RQVKAKQVTF-------HRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
                   R  K   +T+           +++Y E SA +    +  F    R + G
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG 
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 149 DKDTIEKLKEKKLT 162

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 13/163 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V VGDG  GKT  +  + + +F   Y PT+  +    +   +   +    WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR 132
            +  LR   Y      ++ F + ++ +Y+NV   W  +L R   N+PIVL G K+D+++ 
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128
Query: 133 Q---------VKAKQVTFHRKK--NLQYYEISAKSNYNFEKPF 164
           +         + + Q    RK+     Y E S+K+  N +  F
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85
           K+    + +   F   Y+PTI  + +      +    R    DTAGQE+FG +R+ Y   
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 86  GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQ-VTF 141
           G+  +++F VT R +++ +  + R + RV   +  P++L GNK D+ + RQV  ++    
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 142 HRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            R+  + Y E SAK   N ++ F  L R
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVR 164

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C + PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 121

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 17/172 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF----TNCG--KIRFYCW 67
            K+V++GDG +GKT+         F K+Y+ TIG     LDFF    T  G   +    W
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG-----LDFFLRRITLPGNLNVTLQIW 61
Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI---PIV-LC 123
           D  GQ   G + D Y    Q  ++++D+T   +++N+  W+  + +V E     P+V L 
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 124 GNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
           GNK+D+++ R +K  K + F ++     + +SAK+  +    F  +A ++ G
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 15/165 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V VGDG  GKT  +  + +  F   Y PT+  +    +   +   +    WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR 132
            +  LR   Y      I+ F + ++ +Y+NV   W  +L      +PI+L G K+D+++ 
Sbjct: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
Query: 133 Q------VKAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPF 164
           +        A  +T ++ + L+       Y E S+K+  N +  F
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F +KY+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAG 71
           +++ + G GG GK++ V R + G F + Y PT+      +    +C K        DT G
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV---ISCDKSICTLQITDTTG 60
Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVD 128
             +F  ++      G   I+++ +T+R + + +   +  +C +    E+IPI+L GNK D
Sbjct: 61  SHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 120
Query: 129 VK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167
              +R+V++ +     R     + E SAK N+N ++ F  L
Sbjct: 121 ESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGD   GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 10  AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +Y+NV   W  ++   C + PI+L G K+D+++
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 128
Query: 132 RQ 133
            +
Sbjct: 129 DK 130

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGD   GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 9   AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +Y+NV   W  ++   C + PI+L G K+D+++
Sbjct: 68  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 127
Query: 132 RQ 133
            +
Sbjct: 128 DK 129

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  E +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  KY+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V VGDG  GKT  +  +    F   Y PT+  +    +   +   +    WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR 132
            +  LR   Y      ++ F + ++ +Y+N+   W  +L      IPIVL G K+D+++ 
Sbjct: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDD 125
Query: 133 QV------KAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
           +        A  +T  + + L       +Y E S+K+  N +  F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           D   +KLV+VG GG GK+    + +   F  +Y+P+I  + +      +         DT
Sbjct: 6   DMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDT 64
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127
           AGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK 
Sbjct: 65  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 124
Query: 128 DVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 125 DLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 128 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 128 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 9/173 (5%)
Query: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           A+P++   + P++KLV+VGDGG GK+    +     F  +Y+PTI           N   
Sbjct: 10  AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWA 66
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 119
           I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P
Sbjct: 67  I-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 125
Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 169
           ++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN- 131
            +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI+L G K+D+++ 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 132 ----RQVKAKQVT 140
                ++K K++T
Sbjct: 275 KDTIEKLKEKKLT 287

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN- 131
            +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI+L G K+D+++ 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 132 ----RQVKAKQVT 140
                ++K K++T
Sbjct: 275 KDTIEKLKEKKLT 287

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN- 131
            +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI+L G K+D+++ 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 132 ----RQVKAKQVT 140
                ++K K++T
Sbjct: 275 KDTIEKLKEKKLT 287

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 4/149 (2%)
Query: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85
           K+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 86  GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFH 142
           G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     
Sbjct: 82  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLA 141
Query: 143 RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R   + Y E SAK+    E  F  L R++
Sbjct: 142 RSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK     + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGEICLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 9/173 (5%)
Query: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           A+P++   + P++KLV+VGDGG GK+    +     F  +Y+PTI           N   
Sbjct: 10  AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWA 66
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 119
           I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P
Sbjct: 67  I-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 125
Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 169
           ++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R+ 
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREF 163

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           A+P++   + P++KLV+VGDGG GK+    +     F   Y+PTI           N   
Sbjct: 10  AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWA 66
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 119
           I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P
Sbjct: 67  I-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 125
Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 169
           ++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GN+ D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 125 NKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+P+I  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           A+P++   + P++KLV+VGDGG GK+    +     F   Y+PTI           N   
Sbjct: 5   AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWA 61
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 119
           I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P
Sbjct: 62  I-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 120
Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 169
           ++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 121 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 173

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +++PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +   +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VGDG  GKT  +     GE    Y PT+      +  + N  +   + WDTAGQ
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKN-EEFILHLWDTAGQ 81
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK 130
           E++  LR   Y      ++ F V  R ++ N+ T W  ++    +    VL G KVD++
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTGGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGKE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTTGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VGDG  GKT  +     GE    Y PT+      +  + N  +   + WDTAGQ
Sbjct: 22  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKN-EEFILHLWDTAGQ 80
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK 130
           E++  LR   Y      ++ F V  R ++ N+ T W  ++    +    VL G KVD++
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 139

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 128 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETXLLDILDTAGGE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGGE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGVE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 13  TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 71
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 72  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 131
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 132 DPSTIEKLAKNKQKPI 147

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGIE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 6   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 125 DPSTIEKLAKNKQKPI 140

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 10  TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 128
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 129 DPSTIEKLAKNKQKPI 144

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 5   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 124 DPSTIEKLAKNKQKPI 139

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 4   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 63  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 122
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 123 DPSTIEKLAKNKQKPI 138

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 126 DPSTIEKLAKNKQKPI 141

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 6   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 125 DPSTIEKLAKNKQKPI 140

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT----------IGVEVHPLDFFTNCGKI 62
           + K V+VGDG  GKT  +  + T +F  +Y PT          IG E + L  F      
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLF------ 56
Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIV 121
                DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +
Sbjct: 57  -----DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL 111
Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNL 147
           L G ++D+++     +++  +++K +
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPI 137

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85
           K+    + +TG F +KY+PTI  + +  +   +         DTAG E+F  +RD Y  +
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 86  GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TF 141
           GQ  I+++ +  + +++++      + RV   E +P++L GNKVD+++ +  +       
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 142 HRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             +    + E SAKS    ++ F  + R++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 80
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    ++ ++  +   + RV   +++P+VL GNK D+  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     +   + + E SAK+    E  F  L R++
Sbjct: 141 RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 5   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 124 DPSTIEKLAKNKQKPI 139

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHE 80
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 141 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 26/153 (16%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 73  EKFGGLRDGYYIH-------------------GQCAIIMFDVTARLTYKNV-PTWHRDLC 112
           E +  LR   Y                         +I F + +  +++NV   W+ ++ 
Sbjct: 64  EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 113 RVCENIPIVLCGNKVDVKN-----RQVKAKQVT 140
             C N PI+L G K+D+++      ++K K++T
Sbjct: 124 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 156

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR 63
           PNQ        K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I 
Sbjct: 18  PNQNV----KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIE 72
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVL 122
              WDT+G   +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L
Sbjct: 73  LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 132
Query: 123 CGNKVDVKNRQVKAKQVTFHRKKNLQY 149
            G K D++       +++ HR+  + Y
Sbjct: 133 VGCKSDLRTDVSTLVELSNHRQTPVSY 159

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR 63
           PNQ        K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I 
Sbjct: 23  PNQNV----KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIE 77
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVL 122
              WDT+G   +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L
Sbjct: 78  LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 137
Query: 123 CGNKVDVKNRQVKAKQVTFHRKKNLQY 149
            G K D++       +++ HR+  + Y
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSY 164

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 134 VKAKQVTFHRKKNLQY 149
               +++ HR+  + Y
Sbjct: 128 STLVELSNHRQTPVSY 143

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +              DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y P +  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GK   +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 10  TIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 128
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 129 DPSTIEKLAKNKQKPI 144

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +   +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 33/174 (18%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT--------IGVEVHPLDFFTNCGKIRFYC 66
           K V+VGDG  GKT+ V  + T  +  +Y PT        + V+  P         +R   
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRP---------VRLQL 72
Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 125
            DTAGQ++F  LR   Y +    ++ F V +  +++NV   W  ++   C   PI+L G 
Sbjct: 73  CDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGT 132
Query: 126 KVDV-------------KNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
           + D+             K + V  +A ++     K   Y E SA +  N ++ F
Sbjct: 133 QSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAG 
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGL 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAG 
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGL 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 126 DPSTIEKLAKNKQKPI 141

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  +    F ++Y PT+  + + +       +     +DTAGQE
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
            +  LR   Y      +I F V    +++NV   W  +L     N+P +L G ++D+++
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGD   GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+++VG+ G GK+T        + +  +EP    + +      +  ++    +D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 74  KFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVK 130
             GG LRD     G   +I+F VT R ++  VP     L   R   ++P++L GNK D+ 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 142
Query: 131 NRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 171
               ++++V+    ++L      ++ E SA  ++N  + F    R++
Sbjct: 143 ---ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAGQEKFGGLRDGYY 83
           K++ V R + G F   Y PTI      +    +C K        DT G  +F  ++    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQV---ISCDKSVCTLQITDTTGSHQFPAMQRLSI 77
Query: 84  IHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQV- 139
             G   I++F VT++ + + +   ++ + ++    E+IP++L GNK D   R+V  ++  
Sbjct: 78  SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQ 137
Query: 140 TFHRKKNLQYYEISAKSNYNFEKPFLYL 167
              ++    + E SAK NYN ++ F  L
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 7/171 (4%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
           Q        KL I G  G GK+  V R LT  F  +Y+PT+    +      +   +   
Sbjct: 21  QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE-STYRHQATIDDEVVSME 79
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR--DLCRVCENIPIVLC 123
             DTAGQE     R+G+   G+  ++++D+T R +++ V       D  +  +N+ ++L 
Sbjct: 80  ILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV 138
Query: 124 GNKVDVK-NRQVKAKQ-VTFHRKKNLQYYEISA-KSNYNFEKPFLYLARKL 171
           GNK D+  +RQV  ++      +    +YE SA     N  + F  L R++
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F   Y+PTI      L    N  +      DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK 130
           +++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GNK D+ 
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
Query: 131 NRQVKAKQVTFHRKK------NLQYYEISAKSN 157
             +V    +++   K      N  + E SAK N
Sbjct: 125 MERV----ISYEEGKALAESWNAAFLESSAKEN 153

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F   Y+PTI      L    N  +      DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK 130
           +++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GNK D+ 
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
Query: 131 NRQVKAKQVTFHRKK------NLQYYEISAKSN 157
             +V    +++   K      N  + E SAK N
Sbjct: 125 MERV----ISYEEGKALAESWNAAFLESSAKEN 153

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW--DTAGQ 72
           K+VI+G    GKT+   + + GEF + Y+PT+    +        GK  F+    DTAGQ
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE---NTYSKIVTLGKDEFHLHLVDTAGQ 82
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVK 130
           +++  L   + I     ++++ VT+  +++ + + ++ L        +P+VL GNK D+ 
Sbjct: 83  DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142
Query: 131 -NRQVKA 136
             R+V+A
Sbjct: 143 PEREVQA 149

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F   Y+PTI      L    N  +      DTAGQ
Sbjct: 1   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 59
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK 130
           +++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GNK D+ 
Sbjct: 60  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 119
Query: 131 NRQVKAKQVTFHRKK------NLQYYEISAKSN 157
             +V    +++   K      N  + E SAK N
Sbjct: 120 MERV----ISYEEGKALAESWNAAFLESSAKEN 148

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      ++ FD++   T  + +  W  ++   C +  ++L G K D++   
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 131
Query: 134 VKAKQVTFHRKKNLQY 149
               +++  ++  + Y
Sbjct: 132 STLMELSHQKQAPISY 147

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      ++ FD++   T  + +  W  ++   C +  ++L G K D++   
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 147
Query: 134 VKAKQVTFHRKKNLQY 149
               +++  ++  + Y
Sbjct: 148 STLMELSHQKQAPISY 163

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 70
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      ++ FD++   T  + +  W  ++   C +  ++L G K D++   
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 130
Query: 134 VKAKQVTFHRKKNLQY 149
               +++  ++  + Y
Sbjct: 131 STLMELSHQKQAPISY 146

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV----TKGNVTIKIWDIGGQP 78
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
           +F  + + Y       + M D   R   +       +L      + IP+++ GNK D+ N
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
Query: 132 -----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
                + ++   ++  + + +  Y IS K   N +    +L
Sbjct: 139 ALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 15  KLVIVGDGGTGKTTFVKRHLT--GEFEKKYEPTIGVEV--HPLDFFTNCGKIRFYCWDTA 70
           K+ +VG+   GK+  +    +   +F K Y  T GVEV   P+        +  +  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 71  GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPI--VLCGNK 126
           G + +      Y+     AI++FDV++  ++++   W   L   R     P+  VL  NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 127 VDV--KNRQVKAKQV-TFHRKKNLQYYEISAK-SNYNFEKPFLYLA 168
            D+  +  QV+      +     L ++++SA     + + PFL +A
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F    +PTI      L    N  +      DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK 130
           +++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GNK D+ 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 131 NRQVKAKQVTFHRKK------NLQYYEISAKSN 157
             +V    +++   K      N  + E SAK N
Sbjct: 123 MERV----ISYEEGKALAESWNAAFLESSAKEN 151

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 14  FKLVIVGDGGTGKTT----FVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIR 63
           +++V++G+ G GK+T    F   H + +       E  YE T+ V+            I 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATI------IL 60
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V+ R+V     +A  V F    + ++ E SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 30/176 (17%)
Query: 14  FKLVIVGDGGTGKTT----FVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIR 63
           +++V++G+ G GK+T    F   H + +       E  YE T+ V+            I 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATI------IL 60
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V+ R+V     +A  V F  K    + E SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXK----FIETSAAVQHNVKELFEGIVRQV 170

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+++VG+ G GK+T        + +  +E     + +      +  ++    +D   Q 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 74  KFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVK 130
             GG L+D     G   +I+F VT R ++  VP     L   R   ++P++L GNK D+ 
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 121
Query: 131 NRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 171
               ++++V+    ++L      ++ E SA  ++N  + F    R++
Sbjct: 122 ---ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++G+ G GK+T        + +  +E     + +      +  ++    +D   Q 
Sbjct: 13  FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 74  KFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVK 130
             GG L+D     G   +I+F VT R ++  VP     L   R   ++P++L GNK D+ 
Sbjct: 73  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 131
Query: 131 NRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 171
               ++++V+    ++L      ++ E SA  ++N  + F    R++
Sbjct: 132 ---ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQP 78
Query: 74  KFGGLRDGYYIHGQCAII-MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDV- 129
           +F  + +  Y  G  AI+ M D   +   +       +L      + IP+++ GNK D+ 
Sbjct: 79  RFRSMWE-RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137
Query: 130 ----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
               +   ++   ++  + + +  Y IS K   N +    +L
Sbjct: 138 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQP 87
Query: 74  KFGGLRDGYYIHGQCAII-MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDV- 129
           +F  + +  Y  G  AI+ M D   +   +       +L      + IP+++ GNK D+ 
Sbjct: 88  RFRSMWE-RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 146
Query: 130 ----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
               +   ++   ++  + + +  Y IS K   N +    +L
Sbjct: 147 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 188

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 14  FKLVIVGDGGTGKTT----FVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIR 63
           +++V++G+ G GK+T    F   H + +       E  YE T+ V+            I 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATI------IL 91
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 92  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V+ R+V     +A  V F    + ++ E SA   +N ++ F  + R++
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 14  FKLVIVGDGGTGKTT----FVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIR 63
           +++V++G+ G GK+T    F   H + +       E  YE T+ V+            I 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATI------IL 60
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V+ R+V     +A  V F    + ++ E SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           ++   K++IVG    GKTT + +    E      PTIG  V  +         RF  WD 
Sbjct: 13  NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI----NNTRFLMWDI 67
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFD--------VTARLTYKNVPTWHRDLCRVCENIPIV 121
            GQE      + YY + +  I++ D        VT    YK +   H DL +      ++
Sbjct: 68  GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA--HEDLRKA----GLL 121
Query: 122 LCGNKVDVK 130
           +  NK DVK
Sbjct: 122 IFANKQDVK 130

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           ++   K++IVG    GKTT + +    E      PTIG  V  +         RF  WD 
Sbjct: 13  NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI----NNTRFLMWDI 67
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFD--------VTARLTYKNVPTWHRDLCRVCENIPIV 121
            GQE      + YY + +  I++ D        VT    YK +   H DL +      ++
Sbjct: 68  GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA--HEDLRKA----GLL 121
Query: 122 LCGNKVDVK 130
           +  NK DVK
Sbjct: 122 IFANKQDVK 130

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++++VG    GKTT + +   GE      PTIG  V  +++   C    F  WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNIC----FTVWDVGGQD 72
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN 131
           +   L   Y+ + Q  I + D   R   + V    + +  V E  +  ++L  NK D+ N
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPN 132

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 20/172 (11%)
Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           P  K+ IVG+  +GK+  V R+LTG + ++  P  G      +   +         D  G
Sbjct: 19  PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGG 76
Query: 72  --QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCGNK- 126
             + +F    D         + +F +   ++++ V  +   LC  R    +P+VL G + 
Sbjct: 77  PPELQFAAWVD-------AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQD 129
Query: 127 -VDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
            +   N +V    +A++++   K+   YYE  A    N E+ F  +A+K+  
Sbjct: 130 AISAANPRVIDDSRARKLSTDLKR-CTYYETCATYGLNVERVFQDVAQKVVA 180

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
            +   K++IVG    GKTT + +    E      PTIG  V  +         RF  WD 
Sbjct: 19  SHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI----NNTRFLMWDI 73
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTAR 98
            GQE      + YY + +  I++ D T R
Sbjct: 74  GGQESLRSSWNTYYTNTEFVIVVVDSTDR 102

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K++IVG    GKTT + +    E      PTIG  V  +         RF  WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI----NNTRFLMWDIGGQES 77
Query: 75  FGGLRDGYYIHGQCAIIMFDVTAR 98
                + YY + +  I++ D T R
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDR 101

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +++V++GD G GKT+       G+ E+     +G +V+      +         DT   E
Sbjct: 5   YRVVLLGDPGVGKTSLASL-FAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 74  KF--GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 129
           K      ++     G   +I++ +  R ++++       L R    +++PI+L GNK D+
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 130 -KNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF 164
            + R+V  ++     V F    + ++ E SA   +N  + F
Sbjct: 124 ARCREVSVEEGRACAVVF----DCKFIETSATLQHNVAELF 160

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG  G GKTT + +   GE      PTIG  V  + +      I F  WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVETVQY----KNISFTVWDVGGQD 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          +   L   YY + +  I + D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDR 97

>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Query: 9   VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--------HPLDFFTNCG 60
           V     K+ ++GDG  GKT+ +K+ +   F+ K   T G+ V          L+      
Sbjct: 37  VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELK 96
Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           +  F+ WD  GQE        +       +++ D     T  N   W R + +     P+
Sbjct: 97  ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSPV 153
Query: 121 VLCGNKVD 128
           ++  NK+D
Sbjct: 154 IVVMNKID 161

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG  G GKTT + +   GE      PTIG  V  + +      I F  WD  GQ+
Sbjct: 1  MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVETVQY----KNISFTVWDVGGQD 55
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          +   L   YY + +  I + D   R
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDR 80

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 55
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVD 128
           K   L   Y+ + Q  I + D   R   + V     +L R+       +  +++  NK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 112
Query: 129 VKNRQVKAKQVT----FHRKKNLQYY 150
           + N  + A ++T     H  ++  +Y
Sbjct: 113 LPN-AMNAAEITDKLGLHSLRHRNWY 137

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           ++++VG    GKTT + +   GE      PTIG  V  ++F      I F  WD  GQ+K
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEVVTTI-PTIGFNVETVEF----RNISFTVWDVGGQDK 73
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDV 129
              L   YY +    I + D   R   + +     +L R+      ++  I++  NK D+
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDR---ERIDDAREELHRMINEEELKDAIILVFANKQDL 130
Query: 130 KNRQVKAKQVT 140
            N  + A +VT
Sbjct: 131 PN-AMSAAEVT 140

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG  G GKTT + +   GE      PTIG  V  + +      I F  WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVETVQY----KNISFTVWDVGGQD 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          +   L   YY + +  I + D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDR 97

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG  G GKTT + +   GE      PTIG  V  + +   C  I F  WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVECVQY---C-NISFTVWDVGGQD 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          +   L   YY + +  I + D   R
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDR 97

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG    GKT+ + +   GE      PTIG  V  +++      I F  WD  GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          K   L   YY + Q  I + D   R
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDR 97

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ
Sbjct: 17  EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQ 71
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKV 127
           +K   L   Y+ + Q  I + D   R   + V     +L R+       +  +++  NK 
Sbjct: 72  DKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 128 DVKNRQVKAKQVT----FHRKKNLQYY 150
           D+ N  + A ++T     H  ++  +Y
Sbjct: 129 DLPN-AMNAAEITDKLGLHSLRHRNWY 154

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 18/147 (12%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ
Sbjct: 16  EMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQ 70
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKV 127
           +K   L   Y+ + Q  I + D   R   + V     +L R+       +  +++  NK 
Sbjct: 71  DKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQ 127
Query: 128 DVKNRQVKAKQVT----FHRKKNLQYY 150
           D+ N  + A ++T     H  ++  +Y
Sbjct: 128 DLPN-AMNAAEITDKLGLHSLRHRNWY 153

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 220
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVD 128
           K   L   Y+ + Q  I + D   R   + V     +L R+       +  +++  NK D
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 277
Query: 129 VKNRQVKAKQVT----FHRKKNLQYY 150
           + N  + A ++T     H  ++  +Y
Sbjct: 278 LPN-AMNAAEITDKLGLHSLRHRNWY 302

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           D   +K++++G  G GK+   +  + G  E   E       +      +  +     +D 
Sbjct: 4   DESVYKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDI 61
Query: 70  AGQEKFGGLRDGYYIHGQCA------IIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
             Q+       G ++ G C       +I++ VT + +++        L   R  +++PI+
Sbjct: 62  WEQDG------GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII 115
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V++R+V     +A  V F    + ++ E SA  ++N +  F  + R++
Sbjct: 116 LVGNKSDLVRSREVSVDEGRACAVVF----DCKFIETSAALHHNVQALFEGVVRQI 167

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 26/176 (14%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           D   +K++++G  G GK+   +  + G  E   E       +      +  +     +D 
Sbjct: 4   DESVYKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDI 61
Query: 70  AGQEKFGGLRDGYYIHGQCA------IIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
             Q+       G ++ G C       +I++ VT + +++        L   R  +++PI+
Sbjct: 62  WEQDG------GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPII 115
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V++R+V     +A  V F    + ++ E SA  ++N +  F  + R++
Sbjct: 116 LVGNKSDLVRSREVSVDEGRACAVVF----DCKFIETSAALHHNVQALFEGVVRQI 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-119
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-108
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	7e-47
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	2e-45
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-45
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-44
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-44
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-44
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-44
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	9e-44
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-43
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-43
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-43
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-43
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	4e-43
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	5e-43
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	7e-43
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	8e-43
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	8e-43
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	8e-43
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	9e-43
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	9e-43
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-42
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-42
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-42
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-42
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-42
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-42
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-42
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-42
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	4e-42
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	4e-42
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-42
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	6e-42
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	6e-42
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-41
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-41
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	2e-41
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-41
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	2e-41
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	3e-41
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	3e-41
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-41
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	4e-41
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	7e-41
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	8e-41
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	8e-41
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-40
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-40
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-40
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	3e-40
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	3e-40
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	5e-40
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	8e-40
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-39
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-39
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	4e-39
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	5e-39
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	5e-39
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	7e-39
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-38
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-38
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	9e-38
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-37
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-37
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	6e-37
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	6e-36
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	6e-35
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	7e-34
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-33
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-33
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	5e-32
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	3e-31
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-30
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-30
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	7e-30
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	8e-30
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-29
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	5e-29
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-28
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	3e-28
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	7e-28
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	4e-26
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-21
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	5e-19
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	4e-18
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	7e-14
3llu_A	196	RAS-related GTP-binding protein C; structural geno	7e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-11
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-10
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-10
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-10
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-10
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	3e-10
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	4e-10
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-09
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-09
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	6e-09
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	6e-09
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-07
2fh5_B	214	SR-beta, signal recognition particle receptor beta	1e-06
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	7e-06
2ged_A	193	SR-beta, signal recognition particle receptor beta	3e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	6e-05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-04
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-04

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  337 bits (866), Expect = e-119
 Identities = 154/199 (77%), Positives = 166/199 (83%), Gaps = 1/199 (0%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MA   Q       FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G
Sbjct: 4   MASAAQGEPQV-QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 62

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
            I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI 122

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV
Sbjct: 123 VLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 182

Query: 181 ESPALAPPEVQIDLAAQQQ 199
             PALAPPEV +D A   Q
Sbjct: 183 AMPALAPPEVVMDPALAAQ 201

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  308 bits (792), Expect = e-108
 Identities = 86/198 (43%), Positives = 124/198 (62%), Gaps = 5/198 (2%)

Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRF 64
            +  +  ++K+ ++GDGG GKTT++ R L G FEK Y  T+G   HP+ F  + G  I+F
Sbjct: 5   MERREL-TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
             WDTAGQEK   L+D YYI    AI+ FDVT+R+T +N+  W ++   V     PIV+C
Sbjct: 64  NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVC 123

Query: 124 GNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE 181
            NK+D+KNRQ  +K++     + KN +Y+EISAK+ +NF  PFL+LAR   G P+L FV 
Sbjct: 124 ANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVS 183

Query: 182 SPALAPPEVQIDLAAQQQ 199
           +  L P EV  D  + ++
Sbjct: 184 NVNLEPTEVNYDYHSPEE 201

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  152 bits (385), Expect = 7e-47
 Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 17/170 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K++I+GD G GKT+ + +++  +F  +Y+ TIG      DF T     +   +    WD
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTKEVMVDDRLVTMQIWD 63

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLC 123
           TAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ 
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123

Query: 124 GNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK+D++NRQV  K+     + K N+ Y+E SAK   N E+ F  +AR  
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  147 bits (373), Expect = 2e-45
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           +  + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV     DF       N   +R 
Sbjct: 3   EV-AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV-----DFLERQIQVNDEDVRL 56

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
             WDTAGQE+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L  
Sbjct: 57  MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ 116

Query: 125 NKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK+D+ +   +K ++     ++  L++Y  S K + N  + F YLA K 
Sbjct: 117 NKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  147 bits (373), Expect = 2e-45
 Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 17/170 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           FK++++GDGG GK++ + R++T +F+ +   TIGV     +F       +   +    WD
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV-----EFLNKDLEVDGHFVTMQIWD 62

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLC 123
           TAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ 
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 124 GNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK+D+  RQV  ++         +  Y+E SAK   N    F    R++
Sbjct: 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  144 bits (366), Expect = 2e-44
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 14/167 (8%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
             +KLV+VG GG GK+    + +   F  + +PTI       D +      +        
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE------DSYRKQVVIDGETCLLDI 55

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115

Query: 125 NKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R+
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  145 bits (367), Expect = 2e-44
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 20/173 (11%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK-IRFYCW 67
            K++I+GD G GKT+ + R++  ++ ++Y+ TIG      DF T     +  K      W
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA-----DFLTKEVTVDGDKVATMQVW 63

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVL 122
           DTAGQE+F  L   +Y    C ++++DVT   +++N+ +W  +          E  P V+
Sbjct: 64  DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123

Query: 123 CGNKVDVK--NRQVKAKQV-TFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
            GNK+D +   + V  K      +   ++  +  SAK+  N +  F  +AR  
Sbjct: 124 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  144 bits (366), Expect = 3e-44
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 14/167 (8%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
             +KLV+VG GG GK+    + +   F  +Y+PTI       D +      +        
Sbjct: 20  TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE------DSYRKQVVIDGETCLLDI 73

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE++  +RD Y   G+  + +F +    ++ ++  +   + RV   +++P+VL G
Sbjct: 74  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133

Query: 125 NKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           NK D+  R V  KQ     +   + + E SAK+    E  F  L R+
Sbjct: 134 NKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  143 bits (364), Expect = 4e-44
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 21/172 (12%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYCW 67
            K+V++GDG +GKT+         F K+Y+ TIG+     DFF           +    W
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGL-----DFFLRRITLPGNLNVTLQIW 61

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLC 123
           D  GQ   G + D Y    Q  ++++D+T   +++N+  W+  + +V E       + L 
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 124 GNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK+D+++ R +   K  +  F ++     + +SAK+  +    F  +A ++
Sbjct: 122 GNKIDLEHMRTIKPEKHLR--FCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  143 bits (363), Expect = 9e-44
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 14/166 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +KLV+VG  G GK+    + +   F  +Y+PTI       D +      +         D
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE------DSYRKQVVIDGETCLLDILD 58

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK
Sbjct: 59  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNK 118

Query: 127 VDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+ +R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 119 CDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  142 bits (361), Expect = 1e-43
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 14/181 (7%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
           M+  +        FKLV +G+   GKT+ + R +   F+  Y+ TIG+     DF +   
Sbjct: 3   MSSGDFGNPLR-KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI-----DFLSKTM 56

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
                 +R   WDTAGQE+F  L   Y      A++++D+T   ++     W  D+    
Sbjct: 57  YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER 116

Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
             ++ I+L GNK D+ + RQV  ++     ++ N+ + E SAK+ YN ++ F  +A  L 
Sbjct: 117 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176

Query: 173 G 173
           G
Sbjct: 177 G 177

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  142 bits (361), Expect = 1e-43
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 15/167 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            KLV+VG GG GK+    + +   F   Y+PTI       D +T     +    R    D
Sbjct: 10  HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE------DSYTKICSVDGIPARLDILD 63

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQE+FG +R+ Y   G   +++F +  R ++  V      + RV   ++ P+VL GNK
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+++ RQV   +   F    ++ Y+E SAK   N ++ F  L R +
Sbjct: 124 ADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  141 bits (359), Expect = 3e-43
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 15/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K+++VG GG GK+    + +  EF + YEPT        D +      +  +++    D
Sbjct: 19  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKKVVLDGEEVQIDILD 72

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            D+++ RQV  ++      + N+ Y E SAK+  N +K F  L R
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 177

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  141 bits (358), Expect = 3e-43
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 15/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +K+V++G GG GK+    + +TG F +KY+PTI       DF+      +         D
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE------DFYRKEIEVDSSPSVLEILD 57

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNK
Sbjct: 58  TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           VD+++ R+V + +      +    + E SAKS    ++ F  + R
Sbjct: 118 VDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  142 bits (360), Expect = 4e-43
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 16/179 (8%)

Query: 1   MALPNQQTVDY-PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-- 57
           MA    +  +     K+++VG GG GK+    + +  EF + YEPT        D +   
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKK 54

Query: 58  ---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114
              +  +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV
Sbjct: 55  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 114

Query: 115 --CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
              EN+P +L GNK D    RQV  ++      + N+ Y E SAK+  N +K F  L R
Sbjct: 115 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 173

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  140 bits (356), Expect = 5e-43
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 15/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K+++VG GG GK+    + +  EF + YEPT        D +      +  +++    D
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKKVVLDGEEVQIDILD 58

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK
Sbjct: 59  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118

Query: 127 VDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            D+++ RQV  ++      + N+ Y E SAK+  N +K F  L R
Sbjct: 119 SDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  141 bits (358), Expect = 7e-43
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 15/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +++V+ G GG GK++ V R + G F   Y PTI       D +      +         D
Sbjct: 9   YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE------DTYRQVISCDKSVCTLQITD 62

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGN 125
           T G  +F  ++      G   I++F VT++ + + +   ++ + ++    E+IP++L GN
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122

Query: 126 KVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           K D   R+V  ++     ++    + E SAK NYN ++ F  L  
Sbjct: 123 KCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  140 bits (356), Expect = 8e-43
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
           S K+ I+G    GK++   + + G+F   Y+PTI       + FT     N  +      
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE------NTFTKLITVNGQEYHLQLV 59

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
           DTAGQ+++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GN
Sbjct: 60  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119

Query: 126 KVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D    R +  ++        N  + E SAK N      F  +  + 
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  140 bits (355), Expect = 8e-43
 Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
            Y SFK+V++G+G  GKT+ V R+   +F  K+  T+G       F T        ++  
Sbjct: 4   AY-SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGA-----SFLTKKLNIGGKRVNL 57

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
             WDTAGQE+F  L   YY     AI+++D+T   +++ V  W ++L ++    I + + 
Sbjct: 58  AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV 117

Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK+D++  R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  141 bits (358), Expect = 8e-43
 Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 17/194 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           FKLV +G+   GKT+ + R +   F+  Y+ TIG+     DF +         +R   WD
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI-----DFLSKTMYLEDRTVRLQLWD 71

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKV 127
           TAG E+F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK 
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131

Query: 128 DVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 185
           D+ + RQV  ++     ++ N+ + E SAK+ YN ++ F  +A  L G  +         
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES----TQDRS 187

Query: 186 APPEVQIDLAAQQQ 199
               + I L   Q+
Sbjct: 188 REDMIDIKLEKPQE 201

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  141 bits (357), Expect = 9e-43
 Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 15/167 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K+VI+G    GKT+   + + GEF + Y+PT+       + ++        +   +  D
Sbjct: 25  RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE------NTYSKIVTLGKDEFHLHLVD 78

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQ+++  L   + I     ++++ VT+  +++ + + ++ L        +P+VL GNK
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138

Query: 127 VDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+   R+V+A +           + E SA+ N   +  F  + +++
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  141 bits (357), Expect = 9e-43
 Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 15/181 (8%)

Query: 5   NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE---------VHPLDF 55
           +    DY   K + +GD G GKT+ + ++  G+F  K+  T+G++          +  D 
Sbjct: 4   SDGDYDY-LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62

Query: 56  FTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR- 113
               G+ I    WDTAG E+F  L   ++      +++FD+T   ++ NV  W   L   
Sbjct: 63  AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122

Query: 114 -VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
              EN  IVLCGNK D+++ R VK ++      K  + Y+E SA +  N       L   
Sbjct: 123 AYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDL 182

Query: 171 L 171
           +
Sbjct: 183 I 183

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  139 bits (354), Expect = 1e-42
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           FK+++VG+ G GK+T        + +  +E          D +      +  ++    +D
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSE-----DTYERRIMVDKEEVTLIVYD 57

Query: 69  TAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
              Q   GG L+D     G   +I+F VT R ++  VP     L       ++P++L GN
Sbjct: 58  IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 117

Query: 126 KVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           K D  ++R+V  ++        + ++ E SA  ++N  + F    R
Sbjct: 118 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  140 bits (356), Expect = 1e-42
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 15/166 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           FK+++VG+ G GK+T        + +  +EP         D +      +  ++    +D
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPE-----DTYERRIMVDKEEVTLVVYD 78

Query: 69  TAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
              Q   GG LRD     G   +I+F VT R ++  VP     L       ++P++L GN
Sbjct: 79  IWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 138

Query: 126 KVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           K D  ++R+V  ++        + ++ E SA  ++N  + F    R
Sbjct: 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  139 bits (353), Expect = 2e-42
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +++ + G GG GK++ V R + G F + Y PT+       D +      +         D
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE------DTYRQVISCDKSICTLQITD 57

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGN 125
           T G  +F  ++      G   I+++ +T+R + + +   +  +C +    E+IPI+L GN
Sbjct: 58  TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117

Query: 126 KVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           K D   +R+V++ +     R     + E SAK N+N ++ F  L  
Sbjct: 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  139 bits (353), Expect = 2e-42
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 13/169 (7%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           D+  FKL+I+GD G GK++ + R     F   Y  TIGV     DF       N  K++ 
Sbjct: 7   DH-LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGV-----DFKIRTVEINGEKVKL 60

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
             WDTAGQE+F  +   YY      I+++DVT+  ++ NV  W  ++ + C+++  +L G
Sbjct: 61  QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVG 120

Query: 125 NKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK D    + V+ +    F  +  +Q +E SAK N N E+ F  +   +
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  140 bits (356), Expect = 2e-42
 Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 15/185 (8%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE----------V 50
           +        DY   KL+ +GD G GKTTF+ R+   +F  K+  T+G++           
Sbjct: 14  LVPRGSGDYDY-LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 72

Query: 51  HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 110
            P        K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   
Sbjct: 73  GPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 132

Query: 111 LCR--VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166
           L     CEN  IVL GNK D+ + R+V  +Q      K  + Y+E SA +  N EK    
Sbjct: 133 LQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVET 192

Query: 167 LARKL 171
           L   +
Sbjct: 193 LLDLI 197

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  139 bits (353), Expect = 3e-42
 Identities = 58/178 (32%), Positives = 95/178 (53%), Gaps = 14/178 (7%)

Query: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---- 57
           ++         + KLV++GD G GK++ V R +  +F +  E TIG       FF+    
Sbjct: 2   SMAAAGNKSI-NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA-----AFFSQTLA 55

Query: 58  -NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 115
            N   ++F  WDTAGQE++  L   YY     AII+FDVT + +++    W ++L     
Sbjct: 56  VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN 115

Query: 116 ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            N+ + L GNK D+ + R+V A+   T+ ++  L + E SAK+  N ++ F  +AR+L
Sbjct: 116 PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  138 bits (351), Expect = 3e-42
 Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 13/167 (7%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
            FKLV++G+   GK++ V R + G+F +  E TIG       F T     +   ++F  W
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA-----AFLTQTVCLDDTTVKFEIW 60

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNK 126
           DTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+ N R V  ++  ++    +L + E SAK++ N  + F+ +A+KL
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  138 bits (351), Expect = 4e-42
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 13/169 (7%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           D    K++++GD G GK+  + R +  +F   +  TIG+     DF       N  K++ 
Sbjct: 1   DS-IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI-----DFKIKTVDINGKKVKL 54

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
             WDTAGQE+F  +   YY      I+++D+T   T+ N+  W + +     +   ++L 
Sbjct: 55  QIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV 114

Query: 124 GNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D++ R V A Q     ++  + + E SAK++ N  + F  LA+ +
Sbjct: 115 GNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  139 bits (352), Expect = 4e-42
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 13/167 (7%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
             K+ ++GD G GK++ V R +   F+    PTIG       F T          +F  W
Sbjct: 23  ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGA-----SFMTKTVPCGNELHKFLIW 77

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
           DTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK
Sbjct: 78  DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 137

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+ + R+V  K    +         E SAK+  N E+ F  ++R++
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  139 bits (352), Expect = 4e-42
 Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 16/179 (8%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
           MA     + + P++KLV+VGDGG GK+    +     F   Y+PTI       D +    
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE------DSYLKHT 59

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV- 114
             +         DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV 
Sbjct: 60  EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119

Query: 115 -CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSN-YNFEKPFLYLAR 169
             E+ P++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 120 DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  140 bits (354), Expect = 4e-42
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 13/178 (7%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
            +  N ++ D    K++++GD G GK+  + R +  +F   +  TIG+     DF     
Sbjct: 9   ASSGNGKSYDS-IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI-----DFKIKTV 62

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
             N  K++   WDTAGQE+F  +   YY      I+++DVT   T+ N+  W + +    
Sbjct: 63  DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA 122

Query: 115 CENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +   ++L GNK D++ R V A Q     ++  + + E SAK++ N  + F  LA+ +
Sbjct: 123 NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  138 bits (350), Expect = 6e-42
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 17/169 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
             K+ ++GD G GK++ + R +   F+    PTIG       F T          +F  W
Sbjct: 6   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGA-----SFMTKTVQYQNELHKFLIW 60

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
           DTAG E+F  L   YY     AII++D+T   T+  +  W R+L +    +I + + GNK
Sbjct: 61  DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120

Query: 127 VDVKN-RQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+ + R+V    AK   +    +  + E SAK+  N  + F+ ++R++
Sbjct: 121 CDLTDVREVMERDAKD--YADSIHAIFVETSAKNAININELFIEISRRI 167

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  138 bits (351), Expect = 6e-42
 Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 14/176 (7%)

Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
                 DY  FK+V++GD G GK+  + R    EF  + + TIGV     +F T     +
Sbjct: 21  TRDDEYDY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-----EFATRSIQVD 74

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
              I+   WDTAG E++  +   YY     A++++D+   LTY+NV  W ++L      N
Sbjct: 75  GKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN 134

Query: 118 IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           I I+L GNK D+++ R V   +   F  K  L + E SA  + N E  F  +  ++
Sbjct: 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  138 bits (349), Expect = 1e-41
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 14/179 (7%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
           +     +  ++  FK+V++G+ G GKT  + R    EF      TIGV     +F T   
Sbjct: 14  LVPRGSEDYNF-VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGV-----EFSTRTV 67

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
                 ++   WDTAG E++  +   YY     A+++FD+T   TY  V  W ++L    
Sbjct: 68  MLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA 127

Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              I ++L GNK D+   R+V  ++   F     L + E SA  + N E  F  + +++
Sbjct: 128 EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  138 bits (349), Expect = 1e-41
 Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 14/192 (7%)

Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
              + V   + K++I+G+ G GK++ + R     F+ +   TIGV     DF       +
Sbjct: 7   GMDEDVLT-TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGV-----DFKVKTISVD 60

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--E 116
             K +   WDTAGQE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C   
Sbjct: 61  GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN 120

Query: 117 NIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175
           +I  +L GNK+D +NR+V   + + F RK ++ + E SAK+    +  F  L  K+   P
Sbjct: 121 DIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180

Query: 176 NLHFVESPALAP 187
            L   E+    P
Sbjct: 181 GLWESENQNSGP 192

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  138 bits (349), Expect = 2e-41
 Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           D+  FK +++G  GTGK+  + + +  +F++    TIGV     +F +         ++ 
Sbjct: 23  DF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV-----EFGSRVVNVGGKTVKL 76

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
             WDTAGQE+F  +   YY     A++++D+T+R TY ++  W  D   +   NI ++LC
Sbjct: 77  QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILC 136

Query: 124 GNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D+   R+V   +   F ++  L + E SA +  N E+ FL  AR +
Sbjct: 137 GNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  137 bits (347), Expect = 2e-41
 Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 18/175 (10%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
           +T D+  FK +++G+ GTGK+  + + +  +F+     TIGV     +F +         
Sbjct: 5   ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGV-----EFGSKIINVGGKY 58

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPI 120
           ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I
Sbjct: 59  VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVI 118

Query: 121 VLCGNKVDVK-NRQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +LCGNK D+  +R+V    A +  F ++  L + E SA +  N E+ F+  ARK+
Sbjct: 119 ILCGNKKDLDADREVTFLEASR--FAQENELMFLETSALTGENVEEAFVQCARKI 171

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  136 bits (346), Expect = 2e-41
 Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 14/176 (7%)

Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
                  Y  FK +I+GD G GK+  + +    +F      TIGV     +F T     +
Sbjct: 7   TAPYNYSY-IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGV-----EFGTRIIEVS 60

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN 117
             KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N
Sbjct: 61  GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN 120

Query: 118 IPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             I+L GNK D++  R V  ++   F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  137 bits (347), Expect = 3e-41
 Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 14/179 (7%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
           +   + +  D+  FK+V++G+ G GKT  V+R   G F      TIGV     DF     
Sbjct: 15  VPRGSMEDYDF-LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV-----DFMIKTV 68

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
             N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +  
Sbjct: 69  EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 128

Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              +  VL GNK+D+   R+V  ++   F   +++ Y E SAK + N EK FL LA +L
Sbjct: 129 SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  137 bits (347), Expect = 3e-41
 Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           DY  FK+V++GD G GK+  + R    EF  + + TIGV     +F T     +   I+ 
Sbjct: 3   DY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-----EFATRSIQVDGKTIKA 56

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
             WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L 
Sbjct: 57  QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 116

Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D+++ R V   +   F  K NL + E SA  + N E+ F  +  ++
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  136 bits (344), Expect = 3e-41
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 18/167 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +KLV++G GG GK+    + + G F +KY+PTI       D +      +C +      D
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE------DSYRKQVEVDCQQCMLEILD 57

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   E++P++L GNK
Sbjct: 58  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 117

Query: 127 VD-VKNRQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            D    R V   + + +   +  N  + E SAKS  N  + F  L R
Sbjct: 118 CDLEDERVVGKEQGQNLA-RQWCNCAFLESSAKSKINVNEIFYDLVR 163

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  136 bits (345), Expect = 4e-41
 Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 18/172 (10%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
            Y  FK +I+GD G GK+  + +     F+  ++ TIGV     +F       +  +I+ 
Sbjct: 19  SY-LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV-----EFGARMVNIDGKQIKL 72

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
             WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L 
Sbjct: 73  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLI 132

Query: 124 GNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D+++ R V   + +   F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 133 GNKSDLESRRDVKREEGEA--FAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  136 bits (344), Expect = 7e-41
 Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 14/173 (8%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
           +  DY  FKL+++G+   GKT+F+ R+    F   +  T+G+     DF       +  +
Sbjct: 17  RGSDY-MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGI-----DFKVKTVYRHDKR 70

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPI 120
           I+   WDTAGQE++  +   YY      ++M+D+  + ++  V  W   +     +N  +
Sbjct: 71  IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQV 130

Query: 121 VLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +L GNK D+++ R V A+           +++E SAK N N ++ F  L   +
Sbjct: 131 ILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  136 bits (344), Expect = 8e-41
 Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 14/179 (7%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
             L  Q   DY  FKL+I+G+   GKT+F+ R+    F   +  T+G+     DF     
Sbjct: 12  ENLYFQGNFDY-MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGI-----DFKVKTV 65

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
             +  +++   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +    
Sbjct: 66  YRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS 125

Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +N  ++L GNK D++  R V  ++      +    ++E SAK N +  + F  L   +
Sbjct: 126 WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  136 bits (345), Expect = 8e-41
 Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 39/196 (19%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE------------------------ 49
           +K V++G+   GK++ V R     F +    TIG                          
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67

Query: 50  -------------VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96
                            ++  N   I+F  WDTAGQE++  +   YY    CAI++FD++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127

Query: 97  ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAK 155
              T     TW   L ++  N  I+L  NK+D    QV   +V  + +  NL + + SAK
Sbjct: 128 NSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAK 186

Query: 156 SNYNFEKPFLYLARKL 171
           +  N +  F  LA ++
Sbjct: 187 TGTNIKNIFYMLAEEI 202

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  134 bits (340), Expect = 1e-40
 Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 16/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +K++++G  G GK+   +    G  +       G        +      +  +     +D
Sbjct: 3   YKVLLLGAPGVGKSALARI-FGGVEDGPEAEAAG------HTYDRSIVVDGEEASLMVYD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
              Q+    L       G   +I++ VT + +++        L R    +++PI+L GNK
Sbjct: 56  IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 115

Query: 127 VD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            D V++R+V   +        + ++ E SA  ++N +  F  + R
Sbjct: 116 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  135 bits (342), Expect = 2e-40
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 23/185 (12%)

Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKR--HLTGEFEKKYEPTIGVEVHPLDFFT---- 57
           P   T      K+ +VG+   GK+  +        +F K Y  T GV     +       
Sbjct: 12  PIDITATL-RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGV-----EVVVAPVT 65

Query: 58  -NCGKIRF--YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--- 111
                +    +  DTAG + +      Y+     AI++FDV++  ++++   W   L   
Sbjct: 66  IPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSA 125

Query: 112 -CRVCENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAK-SNYNFEKPFLY 166
                  +  VL  NK D+     QV+      +     L ++++SA     + + PFL 
Sbjct: 126 RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLS 185

Query: 167 LARKL 171
           +A   
Sbjct: 186 IATTF 190

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  135 bits (341), Expect = 2e-40
 Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 14/174 (8%)

Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCG 60
               DY  FKL+++GD G GK+  + R     + + Y  TIGV     DF       +  
Sbjct: 27  NPEYDY-LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DFKIRTIELDGK 80

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIP 119
            I+   WDTAGQE+F  +   YY      I+++DVT + ++ NV  W +++ R   EN+ 
Sbjct: 81  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 140

Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +L GNK D+   + V       F     + + E SAK+  N E+ F+ +A ++
Sbjct: 141 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  135 bits (341), Expect = 3e-40
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 24/184 (13%)

Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
               +    ++K+V+ GD   GK++F+ R    EF +    T+GV     DF       +
Sbjct: 20  AKSFSSQK-AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGV-----DFQMKTLIVD 73

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
             +     WDTAGQE+F  +   Y+      ++++DVT   ++ N+  W   +     E 
Sbjct: 74  GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET 133

Query: 118 IPIVLCGNKVDVKN-------RQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
           +PI+L GNK D+++       + V     ++          + E SAK   N  +  L+L
Sbjct: 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEK--LAMTYGALFCETSAKDGSNIVEAVLHL 191

Query: 168 ARKL 171
           AR++
Sbjct: 192 AREV 195

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  134 bits (339), Expect = 3e-40
 Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 14/173 (8%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
           +T DY  FKL+++GD G GKT  + R     F   +  TIG+     DF       +  +
Sbjct: 3   KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGI-----DFKIRTIELDGKR 56

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPI 120
           I+   WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  
Sbjct: 57  IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK 116

Query: 121 VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++ GNK DV + RQV  ++         +++ E SAK+N N E  F  LAR +
Sbjct: 117 MILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  134 bits (339), Expect = 5e-40
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 14/170 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           DY  FK++I+G+   GKT+F+ R+    F   +  T+G+     DF       N  +I+ 
Sbjct: 6   DY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGI-----DFKVKTIYRNDKRIKL 59

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
             WDTAG E++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L 
Sbjct: 60  QIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 119

Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D+++ R V +++          +++E SAK N N ++ F  L   +
Sbjct: 120 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  133 bits (337), Expect = 8e-40
 Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 14/174 (8%)

Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCG 60
               DY  FKL+++GD G GK+  + R     + + Y  TIGV     DF       +  
Sbjct: 10  NPEYDY-LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DFKIRTIELDGK 63

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIP 119
            I+   WDTAGQE+F  +   YY      I+++DVT + ++ NV  W +++ R   EN+ 
Sbjct: 64  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 123

Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +L GNK D+   + V       F     + + E SAK+  N E+ F+ +A ++
Sbjct: 124 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  134 bits (339), Expect = 1e-39
 Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 15/180 (8%)

Query: 1   MALPNQ-QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-- 57
           M+  +     D   FK+V++GD G GK+  + R    EF    + TIGV     +F T  
Sbjct: 1   MSSEDYGYDYDL-LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV-----EFATRT 54

Query: 58  ---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR- 113
                 +I+   WDTAGQE++  +   YY     A+I++D++   +Y+N   W  +L   
Sbjct: 55  LEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN 114

Query: 114 VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             +N+ + L GNK D+ + R V  ++  TF ++  L + E SA ++ N +K F  L   +
Sbjct: 115 ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  132 bits (334), Expect = 2e-39
 Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +++V++GD G GKT+        +    +E          D +      +         D
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGE------DVYERTLTVDGEDTTLVVVD 58

Query: 69  TAGQEKFGG--LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
           T   EK      ++     G   +I++ +  R ++++       L R    +++PI+L G
Sbjct: 59  TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVG 118

Query: 125 NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           NK D  + R+V  ++        + ++ E SA   +N  + F  + R
Sbjct: 119 NKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  132 bits (333), Expect = 4e-39
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
              DY  FKL+++G+ G GK+  + R     +   Y  TIGV     DF       +   
Sbjct: 3   SEYDY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV-----DFKIKTVELDGKT 56

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPI 120
           ++   WDTAGQE+F  +   YY      II++DVT + ++  V  W +++ R     +  
Sbjct: 57  VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 116

Query: 121 VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +L GNK D+K+ R V+      F     + + E SA  + N E  FL +AR++
Sbjct: 117 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  131 bits (332), Expect = 5e-39
 Identities = 61/174 (35%), Positives = 90/174 (51%), Gaps = 15/174 (8%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
           +  D+  FKLV+VGD   GKT  V+R  TG F ++   TIGV     DF          +
Sbjct: 24  EQYDF-LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGV-----DFTMKTLEIQGKR 77

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPI 120
           ++   WDTAGQE+F  +   YY     AI+ +D+T R ++ +VP W  D+ +    NI  
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ 137

Query: 121 VLCGNKVDVKN-RQVKAKQV-TFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           +L GNK D+   R+V   +  +     + L   E SAK + N E+ FL +A +L
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  131 bits (331), Expect = 5e-39
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 15/171 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFT-----NCGKIR 63
           D  +FK+++VGD G GKT  + R   G F    +  T+G+     DF       +  K++
Sbjct: 8   DV-AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGI-----DFRNKVLDVDGVKVK 61

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVL 122
              WDTAGQE+F  +   YY      ++++DVT + ++ N+  W  ++      ++ ++L
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121

Query: 123 CGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            GNKVD  + R VK +      ++  L + E SAK+  N +  F  +A++L
Sbjct: 122 LGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  131 bits (332), Expect = 7e-39
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 22/170 (12%)

Query: 14  FKLVIVGDGGTGKTTFVKR--HLTGEFEKKYEPTIGVEVHPLDFFT--------NCGKIR 63
           +++V++G+ G GK+T       +    +   E          D +         +   I 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE------DTYERTLMVDGESATIIL 91

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L R    E+IPI+
Sbjct: 92  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149

Query: 122 LCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           L GNK D V+ R+V   +        + ++ E SA   +N ++ F  + R
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  130 bits (328), Expect = 2e-38
 Identities = 51/176 (28%), Positives = 96/176 (54%), Gaps = 15/176 (8%)

Query: 5   NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
           + +  D+   +++I+G  G GKT+ ++R     F +  + T+GV     DF         
Sbjct: 19  SPRPADF-KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV-----DFKIKTVELRG 72

Query: 60  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
            KIR   WDTAGQE+F  +   YY   +  I+++D+T + T+ ++P W + + +   E+ 
Sbjct: 73  KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA 132

Query: 119 PIVLCGNKVDVK-NRQVKAKQ-VTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
            ++L GNK+D + +R++  +Q   F ++   +++ E SAK N+N ++ FL L   +
Sbjct: 133 ELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  129 bits (327), Expect = 3e-38
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 17/170 (10%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
              KL I G  G GK+  V R LT  F  +Y+PT+         +      +   +    
Sbjct: 27  AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE------STYRHQATIDDEVVSMEI 80

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE     R+G+   G+  ++++D+T R +++ V      L  +   +N+ ++L G
Sbjct: 81  LDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139

Query: 125 NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKL 171
           NK D   +RQV  ++      +    +YE SA +   N  + F  L R++
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  128 bits (323), Expect = 9e-38
 Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 18/170 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--------NCGKIRFY 65
           +++V++G+ G GK+T              +  +  E    D +         +   I   
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGE----DTYERTLMVDGESATIILLD 62

Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLC 123
            W+  G+ ++  L D     G   +I++ +T R +++        L R    E+IPI+L 
Sbjct: 63  MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120

Query: 124 GNKVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D V+ R+V   +        + ++ E SA   +N ++ F  + R++
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  127 bits (321), Expect = 2e-37
 Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 23/185 (12%)

Query: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-- 59
           +L  + +     FK++++GD   GKT    R   G F  + E TIGV     DF      
Sbjct: 10  SLVPRGSRSR-IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV-----DFRERAVD 63

Query: 60  --GK-IRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-- 113
             G+ I+   WDTAGQE+F   +   YY +    + ++D+T   ++ ++P W  +  +  
Sbjct: 64  IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 123

Query: 114 VCENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKS---NYNFEKPFLY 166
           +  +IP +L GNK D+++  QV    A++  F    ++  +E SAK+   N + E  F+ 
Sbjct: 124 LANDIPRILVGNKCDLRSAIQVPTDLAQK--FADTHSMPLFETSAKNPNDNDHVEAIFMT 181

Query: 167 LARKL 171
           LA KL
Sbjct: 182 LAHKL 186

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  126 bits (320), Expect = 3e-37
 Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 34/176 (19%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---------EVHPLDFFTNCGKI 62
           P  K+ IVG+  +GK+  V R+LTG + ++  P  G          + + L         
Sbjct: 19  PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLI------- 71

Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPI 120
                D  G  +       +       + +F +   ++++ V  +   LC       +P+
Sbjct: 72  ----RDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM 122

Query: 121 VLCGNKVDVKN---RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           VL G +  +     R +   +A++++    K   YYE  A    N E+ F  +A+K
Sbjct: 123 VLVGTQDAISAANPRVIDDSRARKLS-TDLKRCTYYETCATYGLNVERVFQDVAQK 177

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  125 bits (315), Expect = 6e-37
 Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 16/170 (9%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
           S KLV++G+   GK++ V R ++ +F +  EPTIG       F T     N   ++F  W
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGA-----AFLTQRVTINEHTVKFEIW 57

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
           DTAGQE+F  L   YY + Q A++++DVT   ++     W ++L     ++I I L GNK
Sbjct: 58  DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117

Query: 127 VDVK----NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +D       R+V  ++      +K L ++E SAK+  N    FL +  K+
Sbjct: 118 IDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  123 bits (310), Expect = 6e-36
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 26/174 (14%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
           P  +L ++GD  +GK++ + R LTG ++   E T        + +      +        
Sbjct: 6   PELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTES------EQYKKEMLVDGQTHLVLI 58

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVL 122
            + AG          +       I +F +    +++ V   H  L  +       + + L
Sbjct: 59  REEAGAP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113

Query: 123 --CGNKVDVKN-RQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               +++   + R V   +        K   YYE  A    N ++ F  +A+K+
Sbjct: 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  120 bits (303), Expect = 6e-35
 Identities = 28/179 (15%), Positives = 67/179 (37%), Gaps = 26/179 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFT--------NCGKIR 63
            KL+IVG+ G+GKTT +++ +  +         T+G+     D               + 
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGI-----DVKDWPIQIRDKRKRDLV 57

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVL 122
              WD AG+E+F      +       + ++D++        +  W  ++     + P++L
Sbjct: 58  LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVIL 117

Query: 123 CGNKVDVKNRQVKAKQVT-----FHRKKNLQ-----YYEISAKSNYNFEKPFLYLARKL 171
            G  +DV + + +   ++        K+        ++  + + +    K    +  + 
Sbjct: 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  118 bits (297), Expect = 7e-34
 Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 22/181 (12%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
             L  Q  ++     L I+G  G GK+    + LT  F  +Y+P +       D ++   
Sbjct: 12  ENLYFQGPLEV---NLAILGRRGAGKSALTVKFLTKRFISEYDPNLE------DTYSSEE 62

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115
             +   +     DTA  +      + Y       ++++ V +R ++ +  ++   L    
Sbjct: 63  TVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA 121

Query: 116 ----ENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY-NFEKPFLYLA 168
                +IP +L GNK+D  + RQV   + V    +    ++E+SA  ++ + +  F    
Sbjct: 122 KETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

Query: 169 R 169
           R
Sbjct: 182 R 182

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  117 bits (296), Expect = 1e-33
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 11/165 (6%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VGDG  GKT  +     GE    Y PT+  E           +   + WDTAGQ
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF-ENFSHVMKYKNEEFILHLWDTAGQ 81

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E++  LR   Y      ++ F V  R ++ N+ T W  ++    +    VL G KVD+  
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL-- 139

Query: 132 RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
           R+  +  VT     +L        Y E S+ +     + F     
Sbjct: 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  123 bits (311), Expect = 2e-33
 Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 13/194 (6%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
                +  V     K+ ++GDG  GKT+ +K+ +   F+ K   T G+ V         G
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88

Query: 61  --------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC 112
                   +  F+ WD  GQE        +       +++ D     T  N   W R + 
Sbjct: 89  LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIE 145

Query: 113 RVCENIPIVLCGNKVD-VKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           +     P+++  NK+D   +  ++ K++         +++ IS K+    E     L   
Sbjct: 146 KYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA 205

Query: 171 LAGDPNLHFVESPA 184
           +    +++      
Sbjct: 206 VLHPDSIYGTPLAP 219

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  113 bits (286), Expect = 5e-32
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 13/169 (7%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K V VGDG  GKT  +  + + +F   Y PT+  +    +   +   +    WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQ 67

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F + ++ +Y+NV   W  +L R   N+PIVL G K+D+++
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127

Query: 132 ----RQVKAKQVTFH-------RKKNLQYYEISAKSNYNFEKPFLYLAR 169
                      +T         +     Y E S+K+  N +  F    +
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 176

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  111 bits (279), Expect = 3e-31
 Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 15/171 (8%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K V VGDG  GKT  +  + +  F   Y PT+  +    +   N   +    WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGATVNLGLWDTAGQ 66

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      I+ F + ++ +Y+NV   W  +L      +PIVL G K+D+++
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126

Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
                     A  +T  + + L        Y E S+KS  N +  F    R
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  109 bits (275), Expect = 2e-30
 Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 17/169 (10%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
            + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG
Sbjct: 29  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 87

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK 130
           QE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D++
Sbjct: 88  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147

Query: 131 N--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
           +        ++ K   +T+ +   +       +Y E SA +    +  F
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  109 bits (273), Expect = 3e-30
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 17/163 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K V+VGDG  GKT+ V  + T  +  +Y PT   +        +   +R    DTAGQ
Sbjct: 20  GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQ 78

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           ++F  LR   Y +    ++ F V +  +++NV   W  ++   C   PI+L G + D++ 
Sbjct: 79  DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138

Query: 132 --------RQVKAKQVTFH-------RKKNLQYYEISAKSNYN 159
                    + K K V            K   Y E SA +  N
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  107 bits (270), Expect = 7e-30
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 17/168 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K V+VGDG  GKT  +  +    F ++Y PT+  + + +       +     +DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F V    +++NV   W  +L     N+P +L G ++D+++
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136

Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                     +K K +   + + L        Y E SA +    +  F
Sbjct: 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  108 bits (272), Expect = 8e-30
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 17/173 (9%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+V+VGDGG GKT+ +     G F + Y PT+  E + ++       +  + WDTAGQ
Sbjct: 34  SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQ 92

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           + +  LR  +Y      ++ FDVT+  ++ N+   W+ ++   C+ +PI++ G K D++ 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152

Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
                   R+   + VT+HR + +        Y E SA+ + N    F   A 
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  107 bits (269), Expect = 1e-29
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 17/168 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQ
Sbjct: 25  RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQ 83

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++ 
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143

Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                    ++K + V     +++        Y E SAK+     + F
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  105 bits (264), Expect = 5e-29
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 17/161 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-- 131
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127

Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
                    +   V++ +  N+        Y E SA  + N
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  105 bits (264), Expect = 1e-28
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 17/166 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGDG  GKT  +      EF + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-- 131
           +  LR   Y      ++ F V +  + +N+P  W  ++   C N+PI+L  NK D+++  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145

Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                  ++K + V     + +        Y E SAK+     + F
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  104 bits (260), Expect = 3e-28
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 17/163 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G 
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGS 86

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
             +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++ 
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146

Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
                      +   V++ +  N+        Y E SA  + N
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  102 bits (256), Expect = 7e-28
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 17/168 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 132 --------RQVKAKQVTFH-------RKKNLQYYEISAKSNYNFEKPF 164
                   ++ K   +T+            ++Y E SA +    +  F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 98.8 bits (246), Expect = 4e-26
 Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 2/117 (1%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G 
Sbjct: 27  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF-ENYTACLETEEQRVELSLWDTSGS 85

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 128
             +  +R   Y      ++ FD++   T  +    W  ++   C +  ++L G K D
Sbjct: 86  PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTD 142

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 88.1 bits (218), Expect = 1e-21
 Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 19/177 (10%)

Query: 5   NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH---PLDFFTNCGK 61
           ++   D    K+ IV      +T F+           +  T               +  K
Sbjct: 86  SRSLEDCVECKMHIVE-----QTEFIDDQTFQP----HRSTALQPYIKRAAATKLASAEK 136

Query: 62  IRFYCWDTAGQEKF--GGLRDGYYIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVC-- 115
           + ++C D  G E+           +     ++  DV+      + +   +  +L      
Sbjct: 137 LMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK 196

Query: 116 ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              PIV+   K D    R ++        KKNLQ  E SA+SN N +  F  L + +
Sbjct: 197 TKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 79.8 bits (197), Expect = 5e-19
 Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 20/163 (12%)

Query: 13  SFKLVIVGDGGTGKTTFVKR-------HLTGE---FEKKYEPTIGVEVHPLDFFTNCG-K 61
           +FK+V  G G +GKTT +K           GE      + E T+  +  PLD     G K
Sbjct: 14  NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE----- 116
            RF+ +   GQ  +   R          + + D        N  +       + E     
Sbjct: 74  TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133

Query: 117 -NIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKS 156
            ++PIV+  NK D+ +  +  + V      +      E  A  
Sbjct: 134 DDVPIVIQVNKRDLPDA-LPVEMVRAVVDPEGKFPVLEAVATE 175

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 79.6 bits (196), Expect = 4e-18
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 17/172 (9%)

Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR 63
            N         K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   + 
Sbjct: 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVN 204

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVL 122
              WDTAG E +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI+L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264

Query: 123 CGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
            G K+D+++        ++ K   +T+ +   +       +Y E SA +   
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 67.7 bits (165), Expect = 7e-14
 Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 26/189 (13%)

Query: 15  KLVIVGDGGTGKTTFVKR---HLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           KL+++G  G+GK++       + +    ++   TI VE   L F  N   +    WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN---MTLNLWDCGG 61

Query: 72  QEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR---DLCRVCENIPIVLC 123
           Q+ F        +D  +   Q  I +FDV +    K++  + +    L +   +  I + 
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121

Query: 124 GNKVDV----------KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
            +K+D+          +       + +            ++  + +  K +  +   L  
Sbjct: 122 LHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLI- 180

Query: 174 DPNLHFVES 182
            PN+   +S
Sbjct: 181 -PNMSNHQS 188

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 60.8 bits (147), Expect = 7e-12
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 11/122 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           +++++G   +GK++  K              E T  +    +   +    + F  WD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIWDFPG 78

Query: 72  QEKFGGL---RDGYYIHGQCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNK 126
           Q  F       +  +      I + D           +        +V  ++   +  +K
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138

Query: 127 VD 128
           VD
Sbjct: 139 VD 140

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 59.9 bits (146), Expect = 1e-11
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQP 78

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
           +F  + + Y       + M D   +   + +     +L  + +      IP+++ GNK D
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQ---EKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135

Query: 129 VKN 131
           +  
Sbjct: 136 LPG 138

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNICFTVWDVGGQD 84

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
           K   L   Y+ + Q  I + D   R   + V     +L ++ +     +  +++  NK D
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVQESADELQKMLQEDELRDAVLLVFANKQD 141

Query: 129 VKN 131
           + N
Sbjct: 142 MPN 144

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKTT + R   GE     +PTIG  V  L +      ++   WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVETLSY----KNLKLNVWDLGGQT 73

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                   YY      I + D T +     + T  ++L  + +     +  +++  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDK---DRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Query: 129 VKN 131
              
Sbjct: 131 QPG 133

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L+++G    GKTT +K+    + +    PT+G  +  L+        +   WD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFNIKTLEH----RGFKLNIWDVGGQK 73

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                   Y+      I + D   R   + +    R+L  +          +++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADR---QRMQDCQRELQSLLVEERLAGATLLIFANKQD 130

Query: 129 VKN 131
           +  
Sbjct: 131 LPG 133

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 55.3 bits (134), Expect = 3e-10
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+K
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 56

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
              L   Y+ + Q  I + D   R   + V     +L R+       +  +++  NK D+
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113

Query: 130 KN 131
            N
Sbjct: 114 PN 115

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 55.6 bits (135), Expect = 3e-10
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKTT + R   GE      PTIG  V  + +      ++F  WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTY----KNLKFQVWDLGGLT 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                   YY +    I + D   R     +     +L  + E        +V+  NK D
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 119

Query: 129 VKN 131
           ++ 
Sbjct: 120 MEQ 122

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++IVG    GKTT + +    E      PTIG  V  +         RF  WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQE 71

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                 + YY + +  I++ D T R   + +     +L ++          +++  NK D
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 128

Query: 129 VKN 131
           VK 
Sbjct: 129 VKE 131

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++++G    GKT+ + R   G+      PT+GV +  L +      I F  WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVGVNLETLQY----KNISFEVWDLGGQT 77

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                   Y+      I + D T R     +     +L  + +        +++  NK D
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDR---DRMGVAKHELYALLDEDELRKSLLLIFANKQD 134

Query: 129 VKN 131
           + +
Sbjct: 135 LPD 137

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++IVG    GKTT + +    E      PTIG  V  +         RF  WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQE 76

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                 + YY + +  I++ D T R   + +     +L ++          +++  NK D
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 133

Query: 129 VKN 131
           VK 
Sbjct: 134 VKE 136

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 53.8 bits (130), Expect = 2e-09
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV +G    GKTT +          ++ PT+      L        + F  +D  G  +
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQ 81

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
              +   Y       + + D       + +     +L  +       N+PI++ GNK+D 
Sbjct: 82  ARRVWKNYLPAINGIVFLVDCADH---ERLLESKEELDSLMTDETIANVPILILGNKIDR 138

Query: 130 KN 131
             
Sbjct: 139 PE 140

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 52.3 bits (126), Expect = 6e-09
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             ++ +G   +GKTT + +      +     PTIG  +           + F  +D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS----SSLSFTVFDMSGQ 77

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-------NIPIVLCGN 125
            ++  L + YY  GQ  I + D + R     +     +L  +          IPI+   N
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDR---LRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134

Query: 126 KVDVKN 131
           K+D+++
Sbjct: 135 KMDLRD 140

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 52.2 bits (126), Expect = 6e-09
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++++G    GKTT +K+  + +      PT G  +  +         +   WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKSVQS----QGFKLNVWDIGGQR 71

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
           K       Y+ +    I + D   R   K      ++L  + E      +P+++  NK D
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADR---KRFEETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 129 VKN 131
           +  
Sbjct: 129 LLT 131

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 48.7 bits (117), Expect = 1e-07
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 13/124 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             KL+ +G    GKTT +            +PT       L      G I+F  +D  G 
Sbjct: 23  HGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAI----GNIKFTTFDLGGH 77

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKV 127
            +   L   Y+      + + D       +       +L  +       ++P V+ GNK+
Sbjct: 78  IQARRLWKDYFPEVNGIVFLVDAADP---ERFDEARVELDALFNIAELKDVPFVILGNKI 134

Query: 128 DVKN 131
           D  N
Sbjct: 135 DAPN 138

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 14/126 (11%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
            ++ VG   +GKT    R LTG++      +I           N         D  G E 
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYK-VNNNRGNSLTLIDLPGHES 66

Query: 75  FGGLRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-------IPIVLCGN 125
              LR             ++F V +    + V      L +V  +         +++  N
Sbjct: 67  ---LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123

Query: 126 KVDVKN 131
           K D+  
Sbjct: 124 KQDIAM 129

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 44.7 bits (105), Expect = 7e-06
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 15/122 (12%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           ++++G    GK++  K  +    +       E T    +           I     +  G
Sbjct: 2   VLLMGVRRCGKSSICKV-VFHNMQPLDTLYLESTSNPSLEHFSTL-----IDLAVMELPG 55

Query: 72  QEKFGGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRD----LCRVCENIPIVLCGNK 126
           Q  +     D   +      +++ + ++  Y N  T          +V  +I I +  +K
Sbjct: 56  QLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115

Query: 127 VD 128
           VD
Sbjct: 116 VD 117

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 18/128 (14%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++I G   +GKT+ +    T         +   +     D             D  G  
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYD------GSGVTLVDFPGHV 102

Query: 74  KFGGLRDGYYIHGQCAI--IMFDVTARLTYKNVPTWHRDLCRV--------CENIPIVLC 123
           K       Y       +  ++F V + +  K + T    L  +           I I++ 
Sbjct: 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 162

Query: 124 GNKVDVKN 131
            NK ++  
Sbjct: 163 CNKSELFT 170

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 18/127 (14%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           ++I G   +GKT+ +    T         +   +         +         D  G  K
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSA------ADYDGSGVTLVDFPGHVK 67

Query: 75  FGGLRDGYYIHGQCAI--IMFDVTARLTYKNVPTWHRDLCRV--------CENIPIVLCG 124
                  Y       +  ++F V + +  K + T    L  +           I I++  
Sbjct: 68  LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127

Query: 125 NKVDVKN 131
           NK ++  
Sbjct: 128 NKSELFT 134

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 13  SFKLVIVGDGGTGKTTFV----KRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
            F ++ VG+ G GK+T +         GE     +P + ++ +  D   +  +++     
Sbjct: 42  CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101

Query: 69  TAG 71
           T G
Sbjct: 102 TVG 104

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 13/136 (9%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
                +        ++++VG    GKTT + +   GE      PTIG  V  +++     
Sbjct: 153 TPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY----K 207

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---- 116
            I F  WD  GQ+K   L   Y+ + Q  I + D   R   + V     +L R+      
Sbjct: 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDEL 264

Query: 117 -NIPIVLCGNKVDVKN 131
            +  +++  NK D+ N
Sbjct: 265 RDAVLLVFANKQDLPN 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.98
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.98
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.98
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.98
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.98
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.98
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.96
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.96
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.93
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.95
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.95
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.94
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.93
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.93
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.9
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.9
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.89
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.88
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.87
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.87
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.86
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.86
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.86
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.86
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.85
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.85
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.85
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.85
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.85
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.85
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.84
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.84
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.84
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.84
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.83
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.83
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.83
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.82
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.82
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.82
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.82
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.81
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.81
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.81
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.81
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.79
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.79
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.78
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.77
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.76
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.76
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.74
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.73
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.73
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.73
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.73
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.73
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.72
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.7
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.69
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.67
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.67
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.66
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.64
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.61
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.6
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.6
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.59
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.58
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.56
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.55
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.55
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.52
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.48
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.44
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.4
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.39
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.36
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.28
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.28
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.17
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.16
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.95
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.93
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.91
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.91
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.9
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.87
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.85
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.81
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.79
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.66
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.65
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.65
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.62
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.6
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.53
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.51
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.51
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.51
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.5
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.49
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.48
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.47
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.46
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.46
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.46
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.44
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.42
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.39
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.39
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.38
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.38
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.38
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.38
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.36
1g6h_A	257	High-affinity branched-chain amino acid transport	98.35
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.35
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.33
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.32
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.32
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.32
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.29
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.21
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.2
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.2
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.19
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.19
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.15
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.14
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.12
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.06
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.03
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.02
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.99
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.96
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.89
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.87
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.86
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.86
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.85
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.81
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.8
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.79
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.72
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.7
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.69
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.68
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.68
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.66
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.64
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.64
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.63
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.62
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.61
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.6
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.59
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.58
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.58
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.58
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.57
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.55
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.55
2xxa_A	433	Signal recognition particle protein; protein trans	97.55
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.53
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.51
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.49
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.49
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.45
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.45
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.45
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.45
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.44
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.43
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.42
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.41
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.41
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.38
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.38
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.37
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.37
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.35
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.35
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.35
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.35
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.35
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.34
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.34
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.33
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.33
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.33
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.32
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.32
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.3
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.3
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.3
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.3
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.3
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.29
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.29
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.29
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.28
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.28
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.27
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.27
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.27
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.27
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.26
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.25
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.24
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.24
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.24
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.23
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.23
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.22
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.22
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.21
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.21
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.2
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.2
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.19
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.19
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.19
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.18
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.17
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.16
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.16
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.16
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.15
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.14
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.13
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.13
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.12
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.11
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.1
1via_A	175	Shikimate kinase; structural genomics, transferase	97.1
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.1
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.09
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.09
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.08
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.08
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.08
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.08
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.08
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.07
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.06
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.05
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.05
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.04
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.03
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.03
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.03
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.03
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.03
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.02
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.01
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.0
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.99
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.99
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.99
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.98
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.98
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.98
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	96.96
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.96
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.96
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.96
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.95
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.95
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.94
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.94
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.93
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.93
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.92
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.92
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.92
2og2_A	359	Putative signal recognition particle receptor; nuc	96.92
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.91
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.91
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.9
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.89
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.88
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.87
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.87
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.87
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.86
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.85
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.84
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.83
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.83
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.82
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.82
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.82
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.82
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.8
3end_A	307	Light-independent protochlorophyllide reductase ir	96.79
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.77
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.76
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.74
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.73
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.73
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.73
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.72
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.72
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.71
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.7
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.69
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.68
3bos_A	242	Putative DNA replication factor; P-loop containing	96.68
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.64
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.63
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.61
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.6
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.59
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.57
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.57
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.56
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.52
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.52
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.52
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.5
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.49
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.48
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.47
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.44
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.43
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.43
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.41
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.41
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.4
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.4
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.4
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.39
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.37
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.35
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.35
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.33
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.32
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.32
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.32
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.31
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.29
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.28
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.28
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.26
3co5_A	143	Putative two-component system transcriptional RES	96.23
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	96.21
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.2
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.16
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.16
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.15
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.14
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.12
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.11
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.1
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.1
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.08
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.07
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.07
3uc9_A	233	Increased recombination centers protein 6; rossman	96.06
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.05
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.05
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.04
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.04
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.04
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.02
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.01
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.01
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.0

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=2.6e-39  Score=232.19  Aligned_cols=174  Identities=29%  Similarity=0.520  Sum_probs=138.5

Q ss_pred             CCCCCCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc
Q 029077            1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (199)
Q Consensus         1 ~~~~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (199)
                      |........+++.+||+|+|++|||||||+++|+.+.+...+.+|.|.++.......++..+.+.+|||+|+++++.++.
T Consensus         1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~   80 (216)
T 4dkx_A            1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP   80 (216)
T ss_dssp             ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred             CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence            55555555667899999999999999999999999999999999999999988888899999999999999999999999


Q ss_pred             ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCC
Q 029077           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSN  157 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~  157 (199)
                      .+++.++++++|||++++.+|+.+..|+..+.... ++.|+++||||.|+.+. .+.. +...+++..++.|++|||++|
T Consensus        81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg  160 (216)
T 4dkx_A           81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG  160 (216)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred             HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCC
Confidence            99999999999999999999999999999987764 68999999999999763 4443 456899999999999999999


Q ss_pred             CChHHHHHHHHHHHhCC
Q 029077          158 YNFEKPFLYLARKLAGD  174 (199)
Q Consensus       158 ~~v~~~~~~i~~~~~~~  174 (199)
                      .||+++|..|++.+...
T Consensus       161 ~nV~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          161 YNVKQLFRRVAAALPGM  177 (216)
T ss_dssp             BSHHHHHHHHHHHC---
T ss_pred             cCHHHHHHHHHHHHHhh
Confidence            99999999999988643

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=1.9e-36  Score=218.62  Aligned_cols=191  Identities=79%  Similarity=1.287  Sum_probs=172.9

Q ss_pred             CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (199)
Q Consensus         6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (199)
                      .+......+||+++|.+|||||||+++|+.+.+...+.++.|.+........++..+.+.+||++|++.+...+..++++
T Consensus         8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (221)
T 3gj0_A            8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ   87 (221)
T ss_dssp             STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence            34556788999999999999999999988888888888999999999888888889999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +|++++|||++++.++..+..|+..+....++.|+++|+||+|+.+.....+...+++..++.++++||++|.|++++|.
T Consensus        88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  167 (221)
T 3gj0_A           88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  167 (221)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999999998889999999999999876666666678888899999999999999999999


Q ss_pred             HHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077          166 YLARKLAGDPNLHFVESPALAPPEVQIDLAA  196 (199)
Q Consensus       166 ~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~  196 (199)
                      +|.+.+...+.....+.|...+++..++...
T Consensus       168 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  198 (221)
T 3gj0_A          168 WLARKLIGDPNLEFVAMPALAPPEVVMDPAL  198 (221)
T ss_dssp             HHHHHHHTCTTCCEEECCCBCCCSSCCCHHH
T ss_pred             HHHHHHHhCcccccccCCCCCCCCCCcchhh
Confidence            9999999999999999998888777665543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=6.1e-34  Score=202.74  Aligned_cols=171  Identities=33%  Similarity=0.522  Sum_probs=139.1

Q ss_pred             CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (199)
Q Consensus         6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (199)
                      ++......+||+|+|++|||||||+++|..+.+...+.+|.+.++....+.+++..+.+.+||++|++.+...+..++++
T Consensus        22 ~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  101 (201)
T 2hup_A           22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS  101 (201)
T ss_dssp             ----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred             cccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence            44455667999999999999999999999888877788888877777777778888999999999999999989999999


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCC-cEEEeccCCCCChH
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNL-QYYEISAKSNYNFE  161 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~-~~~~~s~~~~~~v~  161 (199)
                      +|++|+|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..++ .++++||++|.|++
T Consensus       102 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~  181 (201)
T 2hup_A          102 ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVE  181 (201)
T ss_dssp             CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHH
Confidence            999999999999999999999999988775 67999999999999763 333 345678888898 99999999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 029077          162 KPFLYLARKLAGDPN  176 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~  176 (199)
                      ++|.+|++.+.+...
T Consensus       182 ~l~~~l~~~i~~~~~  196 (201)
T 2hup_A          182 EAFLRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999876544

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=8.9e-34  Score=203.78  Aligned_cols=170  Identities=20%  Similarity=0.338  Sum_probs=141.8

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCC
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (199)
                      +...+..+||+|+|.+|||||||+++|..+.+...+.+|.+.++ ......++..+.+.+||++|++.+...+..+++++
T Consensus        21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   99 (214)
T 3q3j_B           21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS   99 (214)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence            35557889999999999999999999999998888888988765 44566677889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHhc-HHHHHHHHHhhcCCCcEEEEEeCCCCCC-------------cccc-HHHHHHHHHcCC-cEE
Q 029077           87 QCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVK-AKQVTFHRKKNL-QYY  150 (199)
Q Consensus        87 d~~i~v~d~~~~~s~~~-~~~~~~~l~~~~~~~p~iiv~~K~D~~~-------------~~~~-~~~~~~~~~~~~-~~~  150 (199)
                      |++|+|||++++.++.. +..|+..+....++.|+++|+||+|+.+             +... .+...+++..++ +++
T Consensus       100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (214)
T 3q3j_B          100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL  179 (214)
T ss_dssp             SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence            99999999999999998 6899999998888999999999999975             2233 345678888998 899


Q ss_pred             EeccCCCCC-hHHHHHHHHHHHhCCCCC
Q 029077          151 EISAKSNYN-FEKPFLYLARKLAGDPNL  177 (199)
Q Consensus       151 ~~s~~~~~~-v~~~~~~i~~~~~~~~~~  177 (199)
                      ++||++|.| ++++|.+|++.+......
T Consensus       180 e~SA~~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred             EeccCCCcccHHHHHHHHHHHHhccCcC
Confidence            999999998 999999999999866543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=4.4e-33  Score=195.25  Aligned_cols=169  Identities=32%  Similarity=0.520  Sum_probs=143.9

Q ss_pred             CCCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccc
Q 029077            4 PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY   83 (199)
Q Consensus         4 ~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   83 (199)
                      +..++...+.+||+++|++|||||||+++|..+.+...+.++.+... ......++..+.+.+||++|++.+...+..++
T Consensus         9 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~   87 (183)
T 3kkq_A            9 SAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYM   87 (183)
T ss_dssp             -----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHH
T ss_pred             ccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHH
Confidence            34445667899999999999999999999998888888888887666 55666778889999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccC-CCC
Q 029077           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAK-SNY  158 (199)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~-~~~  158 (199)
                      +++|++++|||++++.++..+..|+..+....  .+.|+++|+||+|+.+ +... .+...+++..+++++++||+ +|.
T Consensus        88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  167 (183)
T 3kkq_A           88 RTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPL  167 (183)
T ss_dssp             HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCB
T ss_pred             hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCC
Confidence            99999999999999999999999999887643  5789999999999976 3333 34567888889999999999 999


Q ss_pred             ChHHHHHHHHHHHhC
Q 029077          159 NFEKPFLYLARKLAG  173 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~  173 (199)
                      |++++|.+|.+.+.+
T Consensus       168 ~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          168 NVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.1e-33  Score=195.94  Aligned_cols=171  Identities=33%  Similarity=0.576  Sum_probs=151.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+|+|++|||||||+++|..+.+...+.++.+.++......+++..+.+.+||++|++.+...+..+++.+|++|
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            46799999999999999999999988888888889888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCcccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|+|++++.++..+..|+..+....  .+.|+++|+||+|+.++... .+...+++..++.++++||++|.|++++|.+|
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  172 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  172 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999999887764  57899999999999765544 34567888889999999999999999999999


Q ss_pred             HHHHhCCCCCceec
Q 029077          168 ARKLAGDPNLHFVE  181 (199)
Q Consensus       168 ~~~~~~~~~~~~~~  181 (199)
                      .+.+.+.+.....+
T Consensus       173 ~~~~~~~~~~~~~~  186 (195)
T 1x3s_A          173 VEKIIQTPGLWESE  186 (195)
T ss_dssp             HHHHHTSGGGTCC-
T ss_pred             HHHHHhhhhhhccc
Confidence            99998776554433

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.5e-32  Score=191.38  Aligned_cols=166  Identities=31%  Similarity=0.622  Sum_probs=141.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ..+.+||+++|++|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            44579999999999999999999998888888888988888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCccccH-HHHHHHH-HcCCcEEEeccCCCCChHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHR-KKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~~~~~-~~~~~~~-~~~~~~~~~s~~~~~~v~~  162 (199)
                      ++|||+++..++..+..|+..+....     .+.|+++|+||+|+.++.... +...+++ ..+.+++++||++|.|+++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  163 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  163 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence            99999999999999999999887654     578999999999998654444 3446666 5678999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 029077          163 PFLYLARKLAGDP  175 (199)
Q Consensus       163 ~~~~i~~~~~~~~  175 (199)
                      +|.+|.+.+.+.+
T Consensus       164 l~~~l~~~~~~~~  176 (177)
T 1wms_A          164 AFEEAVRRVLATE  176 (177)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999987653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=192.42  Aligned_cols=165  Identities=32%  Similarity=0.553  Sum_probs=145.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ....+||+++|++|||||||+++|..+.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..++..+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            34679999999999999999999988888778888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      ++|+|++++.++..+..|+..+....++.|+++|+||+|+.+.. .. .+...++...+++++++||++|.|++++|++|
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  165 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI  165 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999998888899999999999987643 22 34567888889999999999999999999999


Q ss_pred             HHHHhCC
Q 029077          168 ARKLAGD  174 (199)
Q Consensus       168 ~~~~~~~  174 (199)
                      .+.+...
T Consensus       166 ~~~~~~~  172 (181)
T 3tw8_B          166 TELVLRA  172 (181)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=1.2e-32  Score=194.56  Aligned_cols=168  Identities=32%  Similarity=0.530  Sum_probs=142.6

Q ss_pred             CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (199)
Q Consensus         6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (199)
                      .+......+||+|+|++|||||||+++|..+.+...+.++.+.+........++..+.+.+||++|++.+...+..++++
T Consensus        14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   93 (191)
T 2a5j_A           14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG   93 (191)
T ss_dssp             CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence            34455778999999999999999999999888877777888877777777778888999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      +|++++|+|+++..+++.+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..++.++++||++|.|+++
T Consensus        94 ~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  173 (191)
T 2a5j_A           94 AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEE  173 (191)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999999887764 58999999999999753 333 345578888899999999999999999


Q ss_pred             HHHHHHHHHhC
Q 029077          163 PFLYLARKLAG  173 (199)
Q Consensus       163 ~~~~i~~~~~~  173 (199)
                      +|.+|++.+.+
T Consensus       174 l~~~l~~~i~~  184 (191)
T 2a5j_A          174 AFINTAKEIYR  184 (191)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988864

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=9.6e-33  Score=190.71  Aligned_cols=163  Identities=30%  Similarity=0.596  Sum_probs=144.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+++|++|||||||+++|..+.+...+.++.+.+........++..+.+.+||+||++.+......+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999988888888888887877777777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      +|+|++++.++..+..|+..+.....+.|+++|+||+|+.+. .. ..+...+++..+++++++||++|.|+++++.+|.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  162 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA  162 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence            999999999999999999988887789999999999999753 33 3344577888899999999999999999999999


Q ss_pred             HHHhC
Q 029077          169 RKLAG  173 (199)
Q Consensus       169 ~~~~~  173 (199)
                      +.+.+
T Consensus       163 ~~~~~  167 (168)
T 1z2a_A          163 EKHLQ  167 (168)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.1e-32  Score=192.37  Aligned_cols=164  Identities=33%  Similarity=0.535  Sum_probs=144.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ....+||+|+|.+|||||||+++|..+.+...+.++.+.+........++..+.+.+||++|++.+...+..+++++|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            45679999999999999999999998888888888888888777788888889999999999999999899999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|.+
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (179)
T 1z0f_A           92 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  171 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999888765 68999999999999753 333 3456788888999999999999999999999


Q ss_pred             HHHHHhC
Q 029077          167 LARKLAG  173 (199)
Q Consensus       167 i~~~~~~  173 (199)
                      |.+.+.+
T Consensus       172 l~~~i~~  178 (179)
T 1z0f_A          172 AAKKIYQ  178 (179)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHhh
Confidence            9998754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=1.6e-32  Score=194.21  Aligned_cols=167  Identities=25%  Similarity=0.407  Sum_probs=144.7

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      ...+.+||+++|.+|||||||+++|..+.+...+.+|.+..+.. ....++..+.+.+||++|++.+...+..+++++|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            34667999999999999999999999988888888888866654 56677788999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCC---ccc-cHHHHHHHHHcCCc-EEEeccCCCCChHH
Q 029077           89 AIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN---RQV-KAKQVTFHRKKNLQ-YYEISAKSNYNFEK  162 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~---~~~-~~~~~~~~~~~~~~-~~~~s~~~~~~v~~  162 (199)
                      +++|||++++.++..+ ..|+..+....++.|+++|+||+|+.+   +.. ..+...+++..++. ++++||++|.|+++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE  177 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence            9999999999999997 679998888888999999999999974   233 33455788888888 99999999999999


Q ss_pred             HHHHHHHHHhCCCC
Q 029077          163 PFLYLARKLAGDPN  176 (199)
Q Consensus       163 ~~~~i~~~~~~~~~  176 (199)
                      +|.+|.+.+.....
T Consensus       178 l~~~l~~~i~~~~~  191 (194)
T 3reg_A          178 VFEKSVDCIFSNKP  191 (194)
T ss_dssp             HHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999886653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.8e-33  Score=196.48  Aligned_cols=164  Identities=34%  Similarity=0.607  Sum_probs=145.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+......+++.+|++|
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            45689999999999999999999998888888889988888888888888899999999999999988999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.+|
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  183 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  183 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999888765 57899999999999753 333 34456777888999999999999999999999


Q ss_pred             HHHHhCC
Q 029077          168 ARKLAGD  174 (199)
Q Consensus       168 ~~~~~~~  174 (199)
                      ++.+.+.
T Consensus       184 ~~~i~~~  190 (201)
T 2ew1_A          184 ACRLISE  190 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=8.6e-33  Score=191.22  Aligned_cols=163  Identities=33%  Similarity=0.593  Sum_probs=143.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ++.+||+++|++|||||||+++|..+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            46799999999999999999999988888888888888888888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.+|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998887764 68999999999998653 333 34557788889999999999999999999999


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+.+
T Consensus       164 ~~~~~~  169 (170)
T 1r2q_A          164 AKKLPK  169 (170)
T ss_dssp             HHTSCC
T ss_pred             HHHHhh
Confidence            987653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=3.1e-32  Score=191.99  Aligned_cols=163  Identities=25%  Similarity=0.520  Sum_probs=144.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+|+|++|||||||+++|..+.+...+.++.+.++.......++..+.+.+||++|++.+...+..++..+|+++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            44689999999999999999999988888788888888887777777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|.+|
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  179 (189)
T 2gf9_A          100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL  179 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999888765 58999999999999763 333 34567888889999999999999999999999


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+.+
T Consensus       180 ~~~i~~  185 (189)
T 2gf9_A          180 VDVICE  185 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.2e-32  Score=193.51  Aligned_cols=162  Identities=21%  Similarity=0.398  Sum_probs=135.5

Q ss_pred             CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (199)
Q Consensus         6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (199)
                      .....++.+||+++|++|||||||+++|+.+.+...+.++.+ .+ ...+.+++..+.+.+||++|++.+.     +++.
T Consensus        13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~   85 (184)
T 3ihw_A           13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW   85 (184)
T ss_dssp             ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred             CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence            345668899999999999999999999999988877777743 33 3666778888999999999998766     7788


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCC---Ccccc-HHHHHHHHHcC-CcEEEeccCCCC
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK---NRQVK-AKQVTFHRKKN-LQYYEISAKSNY  158 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~---~~~~~-~~~~~~~~~~~-~~~~~~s~~~~~  158 (199)
                      +|++++|||++++.+++.+..|+..+....  .+.|+++|+||.|+.   .+... .+...++...+ +.++++||++|.
T Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  165 (184)
T 3ihw_A           86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL  165 (184)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence            999999999999999999999999998764  579999999999984   23333 34457888886 899999999999


Q ss_pred             ChHHHHHHHHHHHhCC
Q 029077          159 NFEKPFLYLARKLAGD  174 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~~  174 (199)
                      |++++|.+|++.+.+.
T Consensus       166 gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          166 NVERVFQDVAQKVVAL  181 (184)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999987654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=1.6e-32  Score=189.98  Aligned_cols=163  Identities=29%  Similarity=0.533  Sum_probs=137.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+++|++|||||||+++|..+.+...+.++.+.+........++..+.+.+||+||++.+......+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            45799999999999999999999988888788888888887777888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  163 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999998887654 57999999999999763 333 34567888889999999999999999999999


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+.+
T Consensus       164 ~~~~~~  169 (170)
T 1z08_A          164 CKRMIE  169 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=3.6e-32  Score=192.53  Aligned_cols=166  Identities=30%  Similarity=0.548  Sum_probs=148.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ....+||+|+|++|||||||+++|..+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++.+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            35679999999999999999999999888888888988888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.. .. .+...++...+++++++||++|.|++++|.+
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  172 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  172 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999887775 478999999999997543 33 3456788889999999999999999999999


Q ss_pred             HHHHHhCCC
Q 029077          167 LARKLAGDP  175 (199)
Q Consensus       167 i~~~~~~~~  175 (199)
                      |.+.+.+..
T Consensus       173 l~~~i~~~~  181 (196)
T 3tkl_A          173 MAAEIKKRM  181 (196)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            999987544

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=1.8e-32  Score=189.67  Aligned_cols=163  Identities=28%  Similarity=0.551  Sum_probs=138.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      ..+||+++|++|||||||+++|..+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999888877788888877777777778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      |+|++++.++..+..|+..+.... ++.|+++|+||+|+.++.... +...+++..+++++++||++|.|++++|.+|.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  161 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  161 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999888765 579999999999996654444 345778888999999999999999999999999


Q ss_pred             HHhCC
Q 029077          170 KLAGD  174 (199)
Q Consensus       170 ~~~~~  174 (199)
                      .+.+.
T Consensus       162 ~~~~~  166 (170)
T 1g16_A          162 LIQEK  166 (170)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            88654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-32  Score=190.52  Aligned_cols=161  Identities=33%  Similarity=0.597  Sum_probs=142.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      +.+||+++|++|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            56899999999999999999999888888888899888888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc----ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR----QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~----~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      |+|++++.++..+..|+..+.... ++.|+++|+||+|+.+.    ... .+...++...+++++++||++|.|++++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998887765 68999999999998643    233 334577788899999999999999999999


Q ss_pred             HHHHHHh
Q 029077          166 YLARKLA  172 (199)
Q Consensus       166 ~i~~~~~  172 (199)
                      +|.+.+.
T Consensus       162 ~l~~~i~  168 (170)
T 1ek0_A          162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHHh
Confidence            9987664

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=198.67  Aligned_cols=181  Identities=29%  Similarity=0.476  Sum_probs=138.9

Q ss_pred             CCCCCCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc
Q 029077            1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (199)
Q Consensus         1 ~~~~~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (199)
                      |..++........+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+...+.
T Consensus         1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   80 (223)
T 3cpj_B            1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS   80 (223)
T ss_dssp             ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred             CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence            44444444456779999999999999999999998888877888888887777777888889999999999999999999


Q ss_pred             ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCC
Q 029077           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN  157 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                      .+++.+|++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...+++++++||++|
T Consensus        81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  160 (223)
T 3cpj_B           81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS  160 (223)
T ss_dssp             GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence            99999999999999999999999999999887764 57899999999999753 333 3455788888999999999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCceec
Q 029077          158 YNFEKPFLYLARKLAGDPNLHFVE  181 (199)
Q Consensus       158 ~~v~~~~~~i~~~~~~~~~~~~~~  181 (199)
                      .|++++|.+|++.+.+.......+
T Consensus       161 ~gi~~l~~~l~~~i~~~~~~~~~~  184 (223)
T 3cpj_B          161 ENVDKAFEELINTIYQKVSKHQMD  184 (223)
T ss_dssp             CCHHHHHHHHHHHHTTCC------
T ss_pred             CCHHHHHHHHHHHHHHHhhhcccC
Confidence            999999999999998765554443

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.5e-32  Score=193.40  Aligned_cols=164  Identities=21%  Similarity=0.341  Sum_probs=136.2

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      ...++.+||+++|.+|||||||+++|..+.+...+.+|.+..+ ......++..+.+.+||++|++.++.. ..+++.+|
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~   93 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH   93 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence            3446789999999999999999999999888888888888665 345566778899999999999988775 56889999


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEecc-CCCCCh
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISA-KSNYNF  160 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~-~~~~~v  160 (199)
                      ++++|||++++.++..+..|+..+....    .+.|+++|+||+|+.+ +... .+...+++..+++++++|| ++|.|+
T Consensus        94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv  173 (187)
T 3c5c_A           94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHV  173 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccH
Confidence            9999999999999999999999888764    6899999999999975 3333 3456788888999999999 899999


Q ss_pred             HHHHHHHHHHHhC
Q 029077          161 EKPFLYLARKLAG  173 (199)
Q Consensus       161 ~~~~~~i~~~~~~  173 (199)
                      +++|..|++.+.+
T Consensus       174 ~~lf~~l~~~i~~  186 (187)
T 3c5c_A          174 QHVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=2.6e-32  Score=190.99  Aligned_cols=164  Identities=24%  Similarity=0.325  Sum_probs=142.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+++|.+|||||||+++|..+.+...+.++.+.++ ......++..+.+.+||++|++.+......+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4579999999999999999999998888888888888776 566677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||++++.+++.+..|+..+....  .+.|+++|+||+|+.+. .. ..+...+++..+++++++||++|.|++++|.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            9999999999999999999887764  47999999999999653 33 34456788899999999999999999999999


Q ss_pred             HHHHHhCCC
Q 029077          167 LARKLAGDP  175 (199)
Q Consensus       167 i~~~~~~~~  175 (199)
                      |++.+....
T Consensus       163 l~~~~~~~~  171 (181)
T 3t5g_A          163 IILEAEKMD  171 (181)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHhc
Confidence            999998655

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=2.7e-32  Score=190.81  Aligned_cols=166  Identities=33%  Similarity=0.528  Sum_probs=144.0

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      ..+..+||+++|++|||||||+++|..+.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            34677999999999999999999999888887777888888877777788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +++|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|.
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            999999999999999999999888765 58999999999999653 333 345578888899999999999999999999


Q ss_pred             HHHHHHhCC
Q 029077          166 YLARKLAGD  174 (199)
Q Consensus       166 ~i~~~~~~~  174 (199)
                      +|.+.+...
T Consensus       168 ~l~~~~~~~  176 (181)
T 2efe_B          168 EIARRLPRV  176 (181)
T ss_dssp             HHHHTCC--
T ss_pred             HHHHHHHhc
Confidence            999887654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=1.1e-32  Score=192.19  Aligned_cols=166  Identities=26%  Similarity=0.455  Sum_probs=142.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC-cEEEEEEEeCCCcccccccccccccCCcE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      .++.+||+++|++|||||||+++|..+.+...+.++.+.+.....+.+++ ..+.+.+||++|++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45679999999999999999999998887777778888777777777765 57899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhc---CCCc-EEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVC---ENIP-IVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~p-~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      +++|||++++.++..+..|+..+....   .+.| +++|+||+|+.+. ... .+...+++..+++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            999999999999999999998887653   2556 7899999999763 333 344577888899999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 029077          163 PFLYLARKLAGDP  175 (199)
Q Consensus       163 ~~~~i~~~~~~~~  175 (199)
                      +|.+|.+.+.+.+
T Consensus       163 l~~~l~~~~~~~~  175 (178)
T 2hxs_A          163 CFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999987665

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=4.1e-32  Score=187.89  Aligned_cols=162  Identities=28%  Similarity=0.515  Sum_probs=143.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+++|++|||||||+++|..+.+...+.++.|.+.........+..+.+.+||+||.+.+......+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            35699999999999999999999998888888899998888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhh-cCCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|+|++++.++..+..|+..+... .++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.+|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            999999999999999999988876 367899999999999763 333 34457788889999999999999999999999


Q ss_pred             HHHHh
Q 029077          168 ARKLA  172 (199)
Q Consensus       168 ~~~~~  172 (199)
                      .+.+.
T Consensus       164 ~~~i~  168 (170)
T 1z0j_A          164 SRRIP  168 (170)
T ss_dssp             HHHCC
T ss_pred             HHHHh
Confidence            98774

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.2e-32  Score=192.05  Aligned_cols=162  Identities=24%  Similarity=0.370  Sum_probs=140.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+++|++|||||||+++|..+.+...+.+|.+..+ ......++..+.+.+||++|++.+...+..+++++|+++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            4679999999999999999999998888777778876554 345566777899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcCC-cEEEecc
Q 029077           91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYEISA  154 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~~-~~~~~s~  154 (199)
                      +|||++++.++..+. .|+..+....++.|+++|+||+|+.+.             ... .+...+++..++ +++++||
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  174 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA  174 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence            999999999999987 799999888789999999999999753             222 344577878887 8999999


Q ss_pred             CCCCChHHHHHHHHHHHhC
Q 029077          155 KSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       155 ~~~~~v~~~~~~i~~~~~~  173 (199)
                      ++|.|++++|.+|++.+..
T Consensus       175 ~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          175 LTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-32  Score=193.66  Aligned_cols=165  Identities=29%  Similarity=0.495  Sum_probs=145.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+|+|++|||||||+++|..+.+...+.++.|.++......+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            45799999999999999999999988888788899998888888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-ccc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|+|+++..++..+..|+..+.... ++.|+++|+||+|+.+ +.. ..+...+++..+++++++||++|.|++++|.+|
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI  180 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            9999999999999999999888765 5799999999999975 333 334567888889999999999999999999999


Q ss_pred             HHHHhCCC
Q 029077          168 ARKLAGDP  175 (199)
Q Consensus       168 ~~~~~~~~  175 (199)
                      .+.+.+.+
T Consensus       181 ~~~i~~~~  188 (192)
T 2fg5_A          181 SRQIPPLD  188 (192)
T ss_dssp             HHTCC---
T ss_pred             HHHHHhhC
Confidence            99876543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=2e-32  Score=192.99  Aligned_cols=166  Identities=30%  Similarity=0.552  Sum_probs=139.6

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc-ccccccccC
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIH   85 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~   85 (199)
                      ....++.+||+|+|.+|||||||+++|..+.+...+.++.+.++....+..++..+.+.+||++|++.+. ..+..++++
T Consensus        14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   93 (189)
T 1z06_A           14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN   93 (189)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred             CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence            3445678999999999999999999999888888888888888877778888888999999999999887 778888999


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCC---C
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN---Y  158 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~---~  158 (199)
                      +|++|+|+|+++..++..+..|+..+....  .+.|+++|+||+|+.+. ... .+...++...+++++++||++|   .
T Consensus        94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~  173 (189)
T 1z06_A           94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND  173 (189)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence            999999999999999999999999988764  67999999999999753 333 3445788888999999999999   9


Q ss_pred             ChHHHHHHHHHHHh
Q 029077          159 NFEKPFLYLARKLA  172 (199)
Q Consensus       159 ~v~~~~~~i~~~~~  172 (199)
                      |++++|.+|++.+.
T Consensus       174 ~i~~l~~~l~~~i~  187 (189)
T 1z06_A          174 HVEAIFMTLAHKLK  187 (189)
T ss_dssp             CHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.2e-32  Score=191.88  Aligned_cols=164  Identities=29%  Similarity=0.514  Sum_probs=144.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ....+||+|+|++|||||||+++|..+.+...+.++.|.++......+++..+.+.+||++|.+.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            34569999999999999999999998888878888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...++.++++||++|.|++++|.+
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  181 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET  181 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999887764 57899999999999763 333 3455778888999999999999999999999


Q ss_pred             HHHHHhC
Q 029077          167 LARKLAG  173 (199)
Q Consensus       167 i~~~~~~  173 (199)
                      |.+.+.+
T Consensus       182 l~~~i~~  188 (193)
T 2oil_A          182 VLKEIFA  188 (193)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=194.17  Aligned_cols=170  Identities=24%  Similarity=0.299  Sum_probs=135.1

Q ss_pred             CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc-ccccccc
Q 029077            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYI   84 (199)
Q Consensus         6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~   84 (199)
                      .+......+||+++|++|||||||+++|..........++.+.+.....+.+++..+.+.+||++|++.+.. .+..+++
T Consensus        16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   95 (195)
T 3cbq_A           16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ   95 (195)
T ss_dssp             ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH
T ss_pred             CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc
Confidence            445567789999999999999999999764333333444555555556667788889999999999987664 6677788


Q ss_pred             CCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCCh
Q 029077           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNF  160 (199)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      .+|++|+|||++++.+|..+..|+..+....  .+.|+++|+||+|+.+ +.+.. +...+++..++.++++||++|.|+
T Consensus        96 ~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v  175 (195)
T 3cbq_A           96 TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT  175 (195)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence            9999999999999999999999999887765  4799999999999975 33333 445788888899999999999999


Q ss_pred             HHHHHHHHHHHhCCC
Q 029077          161 EKPFLYLARKLAGDP  175 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~  175 (199)
                      +++|.+|++.+....
T Consensus       176 ~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          176 RELFEGAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.2e-32  Score=187.90  Aligned_cols=167  Identities=28%  Similarity=0.555  Sum_probs=136.5

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      .....+||+++|++|||||||+++|..+.+. ..+.++.+.++.......++..+.+.+||+||++.+...+..++.++|
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            3466799999999999999999999887774 466778888877777777888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      ++++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  165 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999888765 58999999999999763 333 34457778889999999999999999999


Q ss_pred             HHHHHHHhCCC
Q 029077          165 LYLARKLAGDP  175 (199)
Q Consensus       165 ~~i~~~~~~~~  175 (199)
                      .+|.+.+.+..
T Consensus       166 ~~l~~~~~~~~  176 (180)
T 2g6b_A          166 TAIAKELKRRS  176 (180)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHh
Confidence            99999887543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.4e-32  Score=192.66  Aligned_cols=163  Identities=29%  Similarity=0.559  Sum_probs=115.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+++|++|||||||+++|..+.+...+.++.+.++......+++..+.+.+||++|++.+...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            34699999999999999999999888777778888888887777777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||++++.++..+..|+..+.... ++.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|.+|
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  165 (183)
T 2fu5_C           86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL  165 (183)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999887764 57999999999999763 333 34567888889999999999999999999999


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+.+
T Consensus       166 ~~~i~~  171 (183)
T 2fu5_C          166 ARDIKA  171 (183)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=195.02  Aligned_cols=166  Identities=27%  Similarity=0.511  Sum_probs=132.6

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      ....+.+||+|+|++|||||||+++|+.+.+...+.++.|.++......+++..+.+.+||++|++.+...+..+++.+|
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  102 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD  102 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence            33466799999999999999999999988887788888888887778888888899999999999999888889999999


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-------cccc-HHHHHHHHHcCCcEEEeccCCCC
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-------RQVK-AKQVTFHRKKNLQYYEISAKSNY  158 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-------~~~~-~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      ++|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+       +... .+...++...+++++++||++|.
T Consensus       103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~  182 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS  182 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence            9999999999999999999999887764 5799999999999852       2333 34457788889999999999999


Q ss_pred             ChHHHHHHHHHHHhC
Q 029077          159 NFEKPFLYLARKLAG  173 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~  173 (199)
                      |++++|.+|++.+.+
T Consensus       183 gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          183 NIVEAVLHLAREVKK  197 (199)
T ss_dssp             THHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=3.2e-32  Score=191.21  Aligned_cols=163  Identities=24%  Similarity=0.414  Sum_probs=138.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ....+||+++|++|||||||+++|..+.+...+.++.+..+ .....+++..+.+.+||++|++.+...+..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999998888877888887655 34556677889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcC-CcEEEec
Q 029077           90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEIS  153 (199)
Q Consensus        90 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~-~~~~~~s  153 (199)
                      ++|||++++.++..+ ..|+..+....++.|+++|+||.|+.+.             .+. .+...+++..+ .+++++|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  162 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  162 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence            999999999999988 6899988887789999999999999742             233 33456777776 6899999


Q ss_pred             cC-CCCChHHHHHHHHHHHhC
Q 029077          154 AK-SNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       154 ~~-~~~~v~~~~~~i~~~~~~  173 (199)
                      |+ +|.|++++|..+++.+..
T Consensus       163 a~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          163 ALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTTBHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCcCHHHHHHHHHHHHhc
Confidence            99 689999999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=6.9e-32  Score=186.23  Aligned_cols=161  Identities=32%  Similarity=0.567  Sum_probs=138.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ++.+||+++|.+|||||||+++|..+.+...+.++.+.... .....++..+.+.+||+||++.+...+..+++++|+++
T Consensus         1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   79 (167)
T 1c1y_A            1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999988887778888875543 45566778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHc-CCcEEEeccCCCCChHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKK-NLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~-~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +|||++++.++..+..|+..+....  .+.|+++|+||+|+.+.. .. .+...+++.. +.+++++||++|.|+++++.
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (167)
T 1c1y_A           80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence            9999999999999999998887753  589999999999997633 32 3445677776 78999999999999999999


Q ss_pred             HHHHHHh
Q 029077          166 YLARKLA  172 (199)
Q Consensus       166 ~i~~~~~  172 (199)
                      +|.+.+.
T Consensus       160 ~l~~~i~  166 (167)
T 1c1y_A          160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998774

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-32  Score=194.03  Aligned_cols=167  Identities=28%  Similarity=0.555  Sum_probs=136.8

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCC
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (199)
                      +......+||+|+|.+|||||||+++|..+.+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++++
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA   99 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence            34456679999999999999999999988887777788888888888888888889999999999999988889999999


Q ss_pred             cEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHc-CCcEEEeccCCCCChHH
Q 029077           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKK-NLQYYEISAKSNYNFEK  162 (199)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~-~~~~~~~s~~~~~~v~~  162 (199)
                      |++|+|||+++..++..+..|+..+.... .+.|+++|+||+|+.+. .... +...+++.. +..++++||++|.|+++
T Consensus       100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  179 (192)
T 2il1_A          100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE  179 (192)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence            99999999999999999999998887765 47999999999999753 3333 345666663 78999999999999999


Q ss_pred             HHHHHHHHHhC
Q 029077          163 PFLYLARKLAG  173 (199)
Q Consensus       163 ~~~~i~~~~~~  173 (199)
                      +|.+|.+.+.+
T Consensus       180 l~~~l~~~i~~  190 (192)
T 2il1_A          180 IFLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=5.4e-32  Score=189.94  Aligned_cols=166  Identities=27%  Similarity=0.480  Sum_probs=141.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      .++.+||+++|++|||||||+++|..+.+...+.++.+... ......++..+.+.+||+||++.+...+..+++.+|++
T Consensus         2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   80 (186)
T 1mh1_A            2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (186)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence            35689999999999999999999998888777777776444 44556677889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcCC-cEEEec
Q 029077           90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYEIS  153 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~~-~~~~~s  153 (199)
                      ++|||++++.++..+. .|+..+....++.|+++|+||+|+.+.             ... .+...+++..+. +++++|
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            9999999999999887 799888887789999999999998653             122 234567777887 899999


Q ss_pred             cCCCCChHHHHHHHHHHHhCCCC
Q 029077          154 AKSNYNFEKPFLYLARKLAGDPN  176 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~~~~  176 (199)
                      |++|.|++++|.+|.+.+.+.+.
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~~  183 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCPPP  183 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCCC
T ss_pred             CCCccCHHHHHHHHHHHHhcccc
Confidence            99999999999999999876553

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=8.3e-32  Score=192.28  Aligned_cols=166  Identities=29%  Similarity=0.532  Sum_probs=146.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            45699999999999999999999998888888888888888777888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.+|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  165 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM  165 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999887765 57999999999999763 333 34457788889999999999999999999999


Q ss_pred             HHHHhCCCC
Q 029077          168 ARKLAGDPN  176 (199)
Q Consensus       168 ~~~~~~~~~  176 (199)
                      .+.+.+...
T Consensus       166 ~~~i~~~~~  174 (206)
T 2bcg_Y          166 ARQIKESMS  174 (206)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHHh
Confidence            998875443

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=8.3e-32  Score=191.82  Aligned_cols=163  Identities=26%  Similarity=0.534  Sum_probs=144.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+|+|++|||||||+++|..+.+...+.++.+.++.......++..+.+.+||++|.+.+...+..+++.+|++|
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            35699999999999999999999988888888888888888888888888899999999999999988899999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.+|
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  165 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL  165 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999888765 57999999999999763 333 34457788889999999999999999999999


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+.+
T Consensus       166 ~~~i~~  171 (203)
T 1zbd_A          166 VDVICE  171 (203)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=1.2e-31  Score=191.42  Aligned_cols=166  Identities=34%  Similarity=0.639  Sum_probs=144.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ....+||+|+|++|||||||+++|..+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            35679999999999999999999998888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCccccH-HHHHHHH-HcCCcEEEeccCCCCChHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHR-KKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~~~~~-~~~~~~~-~~~~~~~~~s~~~~~~v~~  162 (199)
                      |+|+|++++.++..+..|+..+....     .+.|+++|+||.|+.++.... +...++. ..+++++++||++|.|+++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  164 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ  164 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence            99999999999999999999887664     478999999999998654443 3445665 6678999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 029077          163 PFLYLARKLAGDP  175 (199)
Q Consensus       163 ~~~~i~~~~~~~~  175 (199)
                      +|.+|++.+.+.+
T Consensus       165 l~~~l~~~~~~~~  177 (207)
T 1vg8_A          165 AFQTIARNALKQE  177 (207)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999887543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=5.1e-32  Score=190.22  Aligned_cols=164  Identities=32%  Similarity=0.588  Sum_probs=144.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+|+|++|||||||+++|..+.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            45799999999999999999999988888888888888888778888888899999999999999988899999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+ +... .+...++...+++++++||++|.|++++|.++
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  167 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  167 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999998887764 6799999999999965 3333 34567888889999999999999999999999


Q ss_pred             HHHHhCC
Q 029077          168 ARKLAGD  174 (199)
Q Consensus       168 ~~~~~~~  174 (199)
                      .+.+.+.
T Consensus       168 ~~~~~~~  174 (186)
T 2bme_A          168 ARKILNK  174 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=8.9e-32  Score=187.97  Aligned_cols=166  Identities=30%  Similarity=0.508  Sum_probs=142.6

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      +.++.+||+++|.+|||||||+++|..+.+...+.++.+..+. .....++..+.+.+||++|++.+...+..++..+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            4567899999999999999999999988888888888876655 555667778899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      +++|||+++..++..+..|+..+....  .+.|+++|+||+|+.+. ... .+...++...++.++++||++|.|++++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            999999999999999999998885543  57999999999999763 333 34457778889999999999999999999


Q ss_pred             HHHHHHHhCCC
Q 029077          165 LYLARKLAGDP  175 (199)
Q Consensus       165 ~~i~~~~~~~~  175 (199)
                      ++|.+.+.+..
T Consensus       164 ~~l~~~~~~~~  174 (181)
T 2fn4_A          164 EQLVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            99999887543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=7.8e-32  Score=185.95  Aligned_cols=162  Identities=30%  Similarity=0.528  Sum_probs=137.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ++.+||+++|++|||||||+++|..+.+...+.++.+.... .....++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence            56799999999999999999999988887777777765543 44566777899999999999998888899999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCCc-cc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||++++.++..+..|+..+.....  +.|+++|+||+|+.+. .. ..+...+++..+++++++||++|.|++++|.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            99999999999999999998887754  8999999999999753 33 33455778888899999999999999999999


Q ss_pred             HHHHHhC
Q 029077          167 LARKLAG  173 (199)
Q Consensus       167 i~~~~~~  173 (199)
                      |.+.+.+
T Consensus       161 l~~~i~~  167 (168)
T 1u8z_A          161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=5.2e-32  Score=188.86  Aligned_cols=165  Identities=30%  Similarity=0.566  Sum_probs=143.3

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      .+++.+||+++|++|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+||+||++.+...+..++.++|+
T Consensus        10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   89 (179)
T 2y8e_A           10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV   89 (179)
T ss_dssp             --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence            34677999999999999999999999888888888888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.
T Consensus        90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  169 (179)
T 2y8e_A           90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR  169 (179)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998887664 57999999999999753 332 344577778889999999999999999999


Q ss_pred             HHHHHHhC
Q 029077          166 YLARKLAG  173 (199)
Q Consensus       166 ~i~~~~~~  173 (199)
                      +|.+.+.+
T Consensus       170 ~l~~~~~~  177 (179)
T 2y8e_A          170 RVAAALPG  177 (179)
T ss_dssp             HHHHTCC-
T ss_pred             HHHHHHhh
Confidence            99987643

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=1e-31  Score=191.21  Aligned_cols=165  Identities=28%  Similarity=0.456  Sum_probs=139.2

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      .+....+||+++|.+|||||||+++|..+.+...+.++.+.++.. ....++..+.+.+||++|++.+...+..+++++|
T Consensus        20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   98 (201)
T 2gco_A           20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD   98 (201)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence            455677999999999999999999999888877777777655443 3566777899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcCC-cEEE
Q 029077           88 CAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYE  151 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~~-~~~~  151 (199)
                      ++++|||++++.++..+ ..|...+....++.|+++|+||+|+.+.             ... .+...+++..+. .+++
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (201)
T 2gco_A           99 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE  178 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence            99999999999999988 6788888887789999999999999753             122 234567777787 8999


Q ss_pred             eccCCCCChHHHHHHHHHHHhC
Q 029077          152 ISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      +||++|.|++++|.+|.+.+.+
T Consensus       179 ~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          179 CSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             eeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999988753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.4e-32  Score=193.65  Aligned_cols=167  Identities=23%  Similarity=0.320  Sum_probs=138.1

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      +..+.+||+|+|.+|||||||+++|..+.+...+.++.+..+ ......++..+.+.+||++|++.+...+..+++.+|+
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            346789999999999999999999999888888888887666 5555556677899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      +++|||+++..++..+..|+..+....  .++|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  178 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF  178 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999999999887763  47899999999999753 333 34567888899999999999999999999


Q ss_pred             HHHHHHHhCCCC
Q 029077          165 LYLARKLAGDPN  176 (199)
Q Consensus       165 ~~i~~~~~~~~~  176 (199)
                      .+|.+.+.+...
T Consensus       179 ~~l~~~i~~~~~  190 (201)
T 3oes_A          179 TKVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHhhhh
Confidence            999999876543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=4.6e-32  Score=194.45  Aligned_cols=165  Identities=27%  Similarity=0.457  Sum_probs=139.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      +..+||+++|++|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|++|
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            5679999999999999999999998888877888877544 345566778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc----------ccHHHHHHHHHcCC-cEEEeccCCCC
Q 029077           91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ----------VKAKQVTFHRKKNL-QYYEISAKSNY  158 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~----------~~~~~~~~~~~~~~-~~~~~s~~~~~  158 (199)
                      +|||++++.++..+. .|+..+....++.|+++|+||.|+.+..          ...+...++...+. +++++||++|.
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~  165 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ  165 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence            999999999999987 7999998887899999999999986532          23344577777886 89999999999


Q ss_pred             ChHHHHHHHHHHHhCCCC
Q 029077          159 NFEKPFLYLARKLAGDPN  176 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~~~~  176 (199)
                      |++++|.+|++.+.+...
T Consensus       166 gi~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          166 NVKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             THHHHHHHHHHHHHCC--
T ss_pred             CHHHHHHHHHHHHhhhhh
Confidence            999999999999986653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=4e-32  Score=193.18  Aligned_cols=164  Identities=31%  Similarity=0.581  Sum_probs=134.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...+||+|+|++|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+||++|++.+...+..+++.+|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            45789999999999999999999988887777788887777777777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||++++.++..+..|+..+.... ++.|+++|+||+|+.+. ... .+...+++..++.++++||++|.|++++|.+|
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l  182 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC  182 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998887754 58999999999999753 333 34567888889999999999999999999999


Q ss_pred             HHHHhCC
Q 029077          168 ARKLAGD  174 (199)
Q Consensus       168 ~~~~~~~  174 (199)
                      ++.+.++
T Consensus       183 ~~~i~~~  189 (200)
T 2o52_A          183 ARTILNK  189 (200)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=8.8e-32  Score=186.18  Aligned_cols=161  Identities=24%  Similarity=0.313  Sum_probs=124.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc-cccccccCCcEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAII   91 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~   91 (199)
                      .+||+++|++|||||||+++|..........++.+.+........++..+.+.+||++|++.+.. ....+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999876666555555555666666777788889999999999988776 66677889999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      |||+++++++..+..|+..+.....  +.|+++|+||.|+.+ +... .+...+++..+++++++||++|.|++++|.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999999888764  899999999999974 3333 34457888899999999999999999999999


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+..
T Consensus       162 ~~~i~~  167 (169)
T 3q85_A          162 VRQIRL  167 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1e-31  Score=191.03  Aligned_cols=166  Identities=25%  Similarity=0.369  Sum_probs=132.2

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      ......+||+++|.+|||||||+++|..+.+...+.+|.+..+ ......++..+.+.+||++|++.+...+..++.++|
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            4557789999999999999999999998887777777776444 445566777899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcCC-cEEE
Q 029077           88 CAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYE  151 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~~-~~~~  151 (199)
                      ++++|||++++.++..+. .|+..+....++.|+++|+||+|+.+.             ... .+...++...+. ++++
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            999999999999999987 799999888789999999999998652             222 344567777777 8999


Q ss_pred             eccCCCCChHHHHHHHHHHHhCC
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~  174 (199)
                      +||++|.|++++|.+|.+.+.+.
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999987643

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.8e-33  Score=197.69  Aligned_cols=165  Identities=26%  Similarity=0.516  Sum_probs=146.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ....+||+|+|.+|||||||+++|..+.+...+.++.+.+........++..+.+.+||++|++.+...+..+++.+|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            35678999999999999999999998888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++|.+
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  179 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFER  179 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998865 68999999999999753 333 3445788888999999999999999999999


Q ss_pred             HHHHHhCC
Q 029077          167 LARKLAGD  174 (199)
Q Consensus       167 i~~~~~~~  174 (199)
                      |.+.+.+.
T Consensus       180 l~~~i~~~  187 (191)
T 3dz8_A          180 LVDAICDK  187 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=5.6e-32  Score=193.13  Aligned_cols=163  Identities=24%  Similarity=0.414  Sum_probs=138.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ....+||+++|++|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            35679999999999999999999999888887888887665 34556677889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHcC-CcEEEec
Q 029077           90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEIS  153 (199)
Q Consensus        90 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~~-~~~~~~s  153 (199)
                      |+|||++++.++..+ ..|+..+....++.|+++|+||+|+.+.             .+. .+...+++..+ ..++++|
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  183 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  183 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence            999999999999998 6899988887789999999999999742             233 33457777776 6899999


Q ss_pred             cC-CCCChHHHHHHHHHHHhC
Q 029077          154 AK-SNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       154 ~~-~~~~v~~~~~~i~~~~~~  173 (199)
                      |+ +|.|++++|..|++.+..
T Consensus       184 Ak~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          184 ALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHH
T ss_pred             eccCCcCHHHHHHHHHHHHhh
Confidence            99 689999999999988763

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=7e-32  Score=193.87  Aligned_cols=167  Identities=28%  Similarity=0.501  Sum_probs=120.8

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      +...+.+||+++|++|||||||+++|..+.+...+.++.+..+ ......++..+.+.+||++|++.+...+..++.++|
T Consensus        29 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  107 (214)
T 2j1l_A           29 PPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDAS  107 (214)
T ss_dssp             ---CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEE
T ss_pred             CCCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCC
Confidence            3446789999999999999999999998887777777775443 445666778899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------cc-HHHHHHHHHcCC-cEEE
Q 029077           88 CAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKNL-QYYE  151 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~~-~~~~~~~~~~~~-~~~~  151 (199)
                      ++++|||++++.++..+. .|+..+....++.|+++|+||+|+.+..             +. .+...+++..++ ++++
T Consensus       108 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  187 (214)
T 2j1l_A          108 VLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE  187 (214)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence            999999999999999986 7999988887899999999999997532             22 234577778887 8999


Q ss_pred             eccCCCCChHHHHHHHHHHHhCCC
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~  175 (199)
                      +||++|.|++++|.+|++.+.+.+
T Consensus       188 ~SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          188 CSARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999999887654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=1.3e-31  Score=191.06  Aligned_cols=168  Identities=29%  Similarity=0.508  Sum_probs=142.4

Q ss_pred             CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (199)
Q Consensus         6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (199)
                      .+...++.+||+|+|++|||||||+++|..+.+...+.++.+... ...+.+++..+.+.+||++|++.+...+..++..
T Consensus         7 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (206)
T 2bov_A            7 KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS   85 (206)
T ss_dssp             ----CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred             cCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhh
Confidence            344567889999999999999999999998888777778877554 3455667778899999999999998888999999


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChH
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFE  161 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      +|++++|||+++..++..+..|+..+.....  +.|+++|+||.|+.+. ... .+...++...+++++++||++|.|++
T Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  165 (206)
T 2bov_A           86 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD  165 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence            9999999999999999999999999887754  8999999999999763 333 34557788888999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 029077          162 KPFLYLARKLAGD  174 (199)
Q Consensus       162 ~~~~~i~~~~~~~  174 (199)
                      ++|.+|.+.+.+.
T Consensus       166 ~l~~~l~~~i~~~  178 (206)
T 2bov_A          166 KVFFDLMREIRAR  178 (206)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999988653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.8e-31  Score=191.28  Aligned_cols=166  Identities=28%  Similarity=0.527  Sum_probs=143.1

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      .....++|+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   95 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG   95 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence            34567999999999999999999999888877788888888877777778888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +++|||++++.++..+..|+..+.... .+.|+++|+||+|+..+.... +...++...+++++++||++|.|++++|.+
T Consensus        96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  175 (213)
T 3cph_A           96 IILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  175 (213)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999887765 378999999999996554443 345677888899999999999999999999


Q ss_pred             HHHHHhCC
Q 029077          167 LARKLAGD  174 (199)
Q Consensus       167 i~~~~~~~  174 (199)
                      |.+.+.+.
T Consensus       176 l~~~~~~~  183 (213)
T 3cph_A          176 LAKLIQEK  183 (213)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888643

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=6.9e-32  Score=194.30  Aligned_cols=176  Identities=45%  Similarity=0.825  Sum_probs=146.3

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc-EEEEEEEeCCCcccccccccccccCC
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDGYYIHG   86 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (199)
                      ......+||+|+|.+|||||||+++|+.+.+...+.++.+.+.........+. .+.+.+||++|++.+......++..+
T Consensus         6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   85 (218)
T 4djt_A            6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA   85 (218)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence            34567899999999999999999998888888888888887777776655444 48999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHhcHHHHHHHHHhhcC-CCcEEEEEeCCCCCCc-cccHH-HHHHHHHcCCcEEEeccCCCCChHHH
Q 029077           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~p~iiv~~K~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      |++|+|+|++++.++..+..|+..+..... +.|+++|+||+|+.+. ....+ ...++...+++++++||++|.|++++
T Consensus        86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  165 (218)
T 4djt_A           86 SGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP  165 (218)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence            999999999999999999999998887764 5899999999999764 33333 34777788899999999999999999


Q ss_pred             HHHHHHHHhCCCCCceecCC
Q 029077          164 FLYLARKLAGDPNLHFVESP  183 (199)
Q Consensus       164 ~~~i~~~~~~~~~~~~~~~p  183 (199)
                      |.+|.+.+.+.........+
T Consensus       166 ~~~l~~~~~~~~~~~~~~~~  185 (218)
T 4djt_A          166 FLHLARIFTGRPDLIFVSNV  185 (218)
T ss_dssp             HHHHHHHHHCCTTCCBCSCC
T ss_pred             HHHHHHHHhccccccccccc
Confidence            99999999887766655443

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=2.1e-31  Score=188.08  Aligned_cols=164  Identities=29%  Similarity=0.528  Sum_probs=141.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEe-eEEEEecCc---------EEEEEEEeCCCcccccccc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCG---------KIRFYCWDTAGQEKFGGLR   79 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~g~~~~~~~~   79 (199)
                      ....+||+|+|++|||||||+++|..+.+...+.++.+.++. ......++.         .+.+.+||+||++.+....
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            355799999999999999999999988888788888888776 455555555         7899999999999998888


Q ss_pred             cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccC
Q 029077           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAK  155 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~  155 (199)
                      ..+++++|++|+|+|++++.++..+..|+..+....  .+.|+++|+||+|+.+. ... .+...++...+++++++||+
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  167 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA  167 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence            999999999999999999999999999999888765  58999999999999763 333 34457788889999999999


Q ss_pred             CCCChHHHHHHHHHHHhC
Q 029077          156 SNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       156 ~~~~v~~~~~~i~~~~~~  173 (199)
                      +|.|++++|.+|.+.+.+
T Consensus       168 ~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          168 NGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=4.5e-31  Score=181.69  Aligned_cols=162  Identities=28%  Similarity=0.517  Sum_probs=138.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      |+.+||+++|++|||||||+++|..+.+...+.++.+... ......++..+.+.+||+||++.+...+..++..+|+++
T Consensus         1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   79 (166)
T 2ce2_X            1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence            4568999999999999999999998887777777766443 445566777889999999999998888888999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|+|+++..++..+..|+..+.....  +.|+++|+||+|+.++.... +...+++..+++++++|+++|.|+++++.+|
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999998877654  79999999999998754433 4457788889999999999999999999999


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-31  Score=189.84  Aligned_cols=166  Identities=28%  Similarity=0.442  Sum_probs=135.3

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      -+.+..+||+++|.+|||||||+++|..+.+...+.++.+..... ....++..+.+.+||+||++.+...+..++.++|
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   98 (207)
T 2fv8_A           20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD   98 (207)
T ss_dssp             GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCC
T ss_pred             cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCC
Confidence            445678999999999999999999999888877777777655543 3566777899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHhcH-HHHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------cc-HHHHHHHHHcCC-cEEE
Q 029077           88 CAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKNL-QYYE  151 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~~-~~~~~~~~~~~~-~~~~  151 (199)
                      ++++|||+++..++..+ ..|+..+....++.|+++|+||+|+.+..             .. .+...++...+. .+++
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (207)
T 2fv8_A           99 VILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE  178 (207)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence            99999999999999988 67888888877899999999999996531             22 234567777777 8999


Q ss_pred             eccCCCCChHHHHHHHHHHHhCC
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~  174 (199)
                      +||++|.|++++|.+|.+.+...
T Consensus       179 ~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          179 CSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             eeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=3.9e-31  Score=188.18  Aligned_cols=162  Identities=30%  Similarity=0.490  Sum_probs=139.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcE-----------------------------
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-----------------------------   61 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   61 (199)
                      ...+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+..++..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            357999999999999999999999988888888888877777666665544                             


Q ss_pred             --------EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077           62 --------IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (199)
Q Consensus        62 --------~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~  133 (199)
                              ..+.+||+||++.+......+++.+|++++|+|++++.++..+..|+..+..... .|+++|+||+|..+..
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~~~~~  163 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDKNKFQ  163 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTCC-CC
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCccccc
Confidence                    8999999999999999999999999999999999999999999999998877654 9999999999954444


Q ss_pred             cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          134 VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       134 ~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      .. .+...+++..+++++++||++|.|++++|.+|.+.+.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            44 44567888889999999999999999999999988764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=5.1e-31  Score=185.85  Aligned_cols=165  Identities=27%  Similarity=0.499  Sum_probs=129.8

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      ...++.+||+++|.+|||||||+++|..+.+...+.++.+... ......++..+.+.+||++|++.+...+..++..+|
T Consensus        16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (190)
T 3con_A           16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE   94 (190)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred             ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence            4457889999999999999999999998887777777766443 345566777889999999999999899999999999


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCcccc-HHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      ++++|||+++..++..+..|+..+....  .+.|+++|+||+|+.++... .+...+++..+++++++||++|.|+++++
T Consensus        95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  174 (190)
T 3con_A           95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF  174 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999998887765  37999999999999775443 34557888889999999999999999999


Q ss_pred             HHHHHHHhC
Q 029077          165 LYLARKLAG  173 (199)
Q Consensus       165 ~~i~~~~~~  173 (199)
                      .+|.+.+.+
T Consensus       175 ~~l~~~~~~  183 (190)
T 3con_A          175 YTLVREIRQ  183 (190)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=1.2e-31  Score=187.57  Aligned_cols=164  Identities=27%  Similarity=0.549  Sum_probs=127.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      ..+.+||+++|++|||||||+++|..+.+...+.++.+.+.....+..+ +..+.+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            3567999999999999999999999888887788888877777766666 556899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCc--ccc-HHHHHHHH-HcCCcEEEeccCCCCC
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR--QVK-AKQVTFHR-KKNLQYYEISAKSNYN  159 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~--~~~-~~~~~~~~-~~~~~~~~~s~~~~~~  159 (199)
                      +++|+|++++.++..+..|+..+....     .+.|+++|+||+|+.+.  ... .+...++. ..+.+++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            999999999999999999998887654     57899999999999542  222 33446666 4678899999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 029077          160 FEKPFLYLARKLAG  173 (199)
Q Consensus       160 v~~~~~~i~~~~~~  173 (199)
                      ++++|.+|.+.+.+
T Consensus       165 i~~l~~~l~~~~~~  178 (182)
T 1ky3_A          165 VDTAFEEIARSALQ  178 (182)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=1.4e-31  Score=184.54  Aligned_cols=161  Identities=28%  Similarity=0.515  Sum_probs=138.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      |+.+||+++|++|||||||+++|..+.+...+.++.+... .....+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus         1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i   79 (167)
T 1kao_A            1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4679999999999999999999998888777777776433 556667778889999999999999888888999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|+|++++.++..+..|...+....  .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|+++++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  159 (167)
T 1kao_A           80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence            9999999999999999988887764  47999999999998653 333 3445778888999999999999999999999


Q ss_pred             HHHHHh
Q 029077          167 LARKLA  172 (199)
Q Consensus       167 i~~~~~  172 (199)
                      |.+.+.
T Consensus       160 l~~~~~  165 (167)
T 1kao_A          160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998775

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=5.1e-31  Score=185.41  Aligned_cols=163  Identities=27%  Similarity=0.517  Sum_probs=138.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+++|++|||||||+++|..+.+...+.++.+ +........++..+.+.+||+||++.+...+..++..+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            4579999999999999999999998888777777765 444455667778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||+++..++..+..|...+....  .+.|+++|+||+|+.++.... +...++...+++++++||++|.|++++|.+|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  160 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL  160 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999887754  579999999999998755544 4457888889999999999999999999999


Q ss_pred             HHHHhCC
Q 029077          168 ARKLAGD  174 (199)
Q Consensus       168 ~~~~~~~  174 (199)
                      .+.+...
T Consensus       161 ~~~~~~~  167 (189)
T 4dsu_A          161 VREIRKH  167 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988643

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=1.1e-31  Score=190.54  Aligned_cols=167  Identities=19%  Similarity=0.339  Sum_probs=131.5

Q ss_pred             CCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccc
Q 029077            5 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY   83 (199)
Q Consensus         5 ~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   83 (199)
                      +.++......||+|+|.+|||||||+++|..+.+.. .+.+|.+......    +...+.+.+||++|++.+...+..++
T Consensus         9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~   84 (199)
T 4bas_A            9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYY   84 (199)
T ss_dssp             -------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGC
T ss_pred             ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHH
Confidence            455677889999999999999999999999888877 7788888655543    34678999999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc---------CCCcEEEEEeCCCCCCccccHHHH------HHHHHcCCc
Q 029077           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---------ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQ  148 (199)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---------~~~p~iiv~~K~D~~~~~~~~~~~------~~~~~~~~~  148 (199)
                      +++|++|+|||+++..+|..+..|+..+....         .+.|+++|+||+|+.+.....+..      .+++..++.
T Consensus        85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  164 (199)
T 4bas_A           85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFV  164 (199)
T ss_dssp             TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEE
T ss_pred             hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeE
Confidence            99999999999999999999998888776542         289999999999998753322221      112456788


Q ss_pred             EEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077          149 YYEISAKSNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       149 ~~~~s~~~~~~v~~~~~~i~~~~~~~~  175 (199)
                      ++++||++|.|++++|++|.+.+....
T Consensus       165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          165 IFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             EEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999887543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=2.5e-31  Score=186.66  Aligned_cols=165  Identities=29%  Similarity=0.517  Sum_probs=139.8

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      ...++.+||+++|++|||||||+++|..+.+...+.++.+... ......++..+.+.+||++|++.+...+..++..+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (187)
T 2a9k_A           13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   91 (187)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence            3457789999999999999999999998888777777776554 344566777889999999999999888899999999


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhcC--CCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      ++++|||+++..++..+..|+..+.....  +.|+++|+||+|+.+. ... .+...+++..+++++++||++|.|++++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  171 (187)
T 2a9k_A           92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV  171 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence            99999999999999999999998887764  8999999999999763 333 3456788888999999999999999999


Q ss_pred             HHHHHHHHhC
Q 029077          164 FLYLARKLAG  173 (199)
Q Consensus       164 ~~~i~~~~~~  173 (199)
                      |.+|.+.+.+
T Consensus       172 ~~~l~~~i~~  181 (187)
T 2a9k_A          172 FFDLMREIRA  181 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=2.3e-32  Score=193.58  Aligned_cols=165  Identities=19%  Similarity=0.171  Sum_probs=138.2

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------ccceeEEEeeEEE-EecCcEEEEEEEeCCCccccc
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------EPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFG   76 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~~~   76 (199)
                      .....+||+++|++|||||||++. +.+.+...+           .+|.+.++..... ..++..+.+.+||++|++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            345679999999999999999975 555555543           3466666666655 567788999999999999999


Q ss_pred             ccccccccCCcEEEEEEeCC------ChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cE
Q 029077           77 GLRDGYYIHGQCAIIMFDVT------ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QY  149 (199)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~  149 (199)
                      ..+..+++++|++|+|||++      +.+++..+..|+..+.....+.|+++|+||+|+.+.....+..++++..++ ++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  168 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPV  168 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCE
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceE
Confidence            99999999999999999999      556777788888877555578999999999999887666667788888898 99


Q ss_pred             EEeccCCCCChHHHHHHHHHHHhCC
Q 029077          150 YEISAKSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~i~~~~~~~  174 (199)
                      +++||++|.|++++|.+|.+.+.+.
T Consensus       169 ~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          169 LEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             EECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=4.1e-32  Score=190.02  Aligned_cols=162  Identities=28%  Similarity=0.450  Sum_probs=123.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      +..+||+++|++|||||||+++|..+.+...+.+|.+..+. .....++..+.+.+||++|++.+...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            56799999999999999999999988887777777764432 23344556788899999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc------------ccHHHHHHHHHcCC-cEEEeccCC
Q 029077           91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------------VKAKQVTFHRKKNL-QYYEISAKS  156 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~------------~~~~~~~~~~~~~~-~~~~~s~~~  156 (199)
                      +|||++++.++..+. .|+..+....++.|+++|+||+|+.+..            ...+...+++..+. +++++||++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  164 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS  164 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence            999999999999987 6999888877899999999999986532            22344577777886 899999999


Q ss_pred             CCChHHHHHHHHHHHhC
Q 029077          157 NYNFEKPFLYLARKLAG  173 (199)
Q Consensus       157 ~~~v~~~~~~i~~~~~~  173 (199)
                      |.|++++|.+|.+.+.+
T Consensus       165 ~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          165 QENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             CTTHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999998754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=3.4e-31  Score=182.71  Aligned_cols=160  Identities=19%  Similarity=0.257  Sum_probs=114.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      +.+||+++|++|||||||+++|..... ....++.+.++ .....+++..+.+.+||++|++.+...+..+++.+|++++
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   78 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI   78 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCccc-cCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence            368999999999999999999764433 34445666555 3455678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      |||++++.++..+..|+..+....  .+.|+++|+||+|+.+. .... +...++...+++++++||++|.|++++|.+|
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  158 (166)
T 3q72_A           79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  158 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence            999999999999999999887653  58999999999999753 3333 3457888889999999999999999999999


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      .+.+..
T Consensus       159 ~~~~~~  164 (166)
T 3q72_A          159 VRQIRL  164 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=3.8e-31  Score=183.88  Aligned_cols=162  Identities=20%  Similarity=0.293  Sum_probs=127.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--ccccccccccCCcE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGYYIHGQC   88 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d~   88 (199)
                      +..+||+++|++|||||||+++|..+.+... .++.|.+.....+.+++..+.+.+||++|++.  +......+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            4579999999999999999999887665433 34566676666777788889999999999887  55666778899999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      +++|||++++.++..+..|+..+....  .+.|+++|+||+|+.+. .... +...++...+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998887653  58999999999999763 3333 3456777888999999999999999999


Q ss_pred             HHHHHHHhC
Q 029077          165 LYLARKLAG  173 (199)
Q Consensus       165 ~~i~~~~~~  173 (199)
                      .+|.+.+..
T Consensus       161 ~~l~~~~~~  169 (175)
T 2nzj_A          161 EGVVRQLRL  169 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.98  E-value=3.9e-31  Score=184.56  Aligned_cols=156  Identities=20%  Similarity=0.374  Sum_probs=128.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ++.+||+++|++|||||||+++|..+.+.. +.+|.+..+ .....+++..+.+.+||++|++.     ..+++++|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            578999999999999999999999888765 667776443 45566677889999999999876     45678899999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCC---CccccH-HHHHHHHHc-CCcEEEeccCCCCChH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVK---NRQVKA-KQVTFHRKK-NLQYYEISAKSNYNFE  161 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~---~~~~~~-~~~~~~~~~-~~~~~~~s~~~~~~v~  161 (199)
                      +|||++++.++..+..|+..+....    ++.|+++|+||.|+.   .+.... +...++... +++++++||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            9999999999999999877665542    478999999999994   233333 345666665 6899999999999999


Q ss_pred             HHHHHHHHHHhC
Q 029077          162 KPFLYLARKLAG  173 (199)
Q Consensus       162 ~~~~~i~~~~~~  173 (199)
                      ++|.+|++.+..
T Consensus       158 ~lf~~l~~~~~~  169 (178)
T 2iwr_A          158 RVFQEVAQKVVT  169 (178)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.98  E-value=3.6e-32  Score=194.16  Aligned_cols=163  Identities=24%  Similarity=0.398  Sum_probs=106.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeEEEeeEEEEecCc--EEEEEEEeCCCcccccccccccccCC
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHG   86 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~   86 (199)
                      ...+||+|+|++|||||||+++|..+  .+...+.+|.+.+.....+.+++.  .+.+.+||++|++.+...+..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            56799999999999999999998877  677777888887777777777776  89999999999999989999999999


Q ss_pred             cEEEEEEeCCChhhHhcHHHHHHHHHhhcC----CCcEEEEEeCCCCCC--cccc-HHHHHHHHHcCCcEEEeccCC-CC
Q 029077           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN--RQVK-AKQVTFHRKKNLQYYEISAKS-NY  158 (199)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~----~~p~iiv~~K~D~~~--~~~~-~~~~~~~~~~~~~~~~~s~~~-~~  158 (199)
                      |++|+|||++++.++..+..|+..+.....    +.|+++|+||+|+.+  +... .+...+++..+++++++||++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988754    899999999999976  3333 455678888899999999999 99


Q ss_pred             ChHHHHHHHHHHHhC
Q 029077          159 NFEKPFLYLARKLAG  173 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~  173 (199)
                      |++++|.+|.+.+.+
T Consensus       178 gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          178 DADAPFLSIATTFYR  192 (208)
T ss_dssp             --CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=3.8e-31  Score=187.51  Aligned_cols=163  Identities=28%  Similarity=0.405  Sum_probs=138.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      .++.+||+++|.+|||||||+++|..+.+...+.++.+..+ .....+++..+.+.+||++|++. ...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            45689999999999999999999998888878888887554 44556677889999999999888 67778889999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCC-ChHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNY-NFEKPF  164 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~-~v~~~~  164 (199)
                      ++|||++++.++..+..|+..+....  .+.|+++|+||+|+.+. ... .+...+++..+++++++||++|. |++++|
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            99999999999999999998887753  58999999999999763 333 34557788889999999999999 999999


Q ss_pred             HHHHHHHhCC
Q 029077          165 LYLARKLAGD  174 (199)
Q Consensus       165 ~~i~~~~~~~  174 (199)
                      .+|++.+.+.
T Consensus       183 ~~l~~~i~~~  192 (196)
T 2atv_A          183 YELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.98  E-value=1.2e-31  Score=192.89  Aligned_cols=164  Identities=32%  Similarity=0.532  Sum_probs=141.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc----------EEEEEEEeCCCccccccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRD   80 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~g~~~~~~~~~   80 (199)
                      ...+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++.          .+.+.+||++|++.+...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            45689999999999999999999988887778888887777766666665          78999999999999988889


Q ss_pred             ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCC
Q 029077           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKS  156 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~  156 (199)
                      .+++.+|++|+|||+++..++..+..|+..+....  .+.|+++|+||+|+.+. ... .+...+++..+++++++||++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  182 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT  182 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence            99999999999999999999999999988776654  57999999999999763 333 345578888899999999999


Q ss_pred             CCChHHHHHHHHHHHhCC
Q 029077          157 NYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       157 ~~~v~~~~~~i~~~~~~~  174 (199)
                      |.|++++|.+|.+.+.+.
T Consensus       183 g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          183 GQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.98  E-value=3.9e-31  Score=188.63  Aligned_cols=162  Identities=26%  Similarity=0.472  Sum_probs=134.6

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      ..++.+||+++|.+|||||||+++|..+.+...+.++.+ +........++..+.+.+||++|++.+......+++++|+
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV  104 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            346789999999999999999999998888877777775 3445556677788999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------c-cHHHHHHHHHcCC-cEEEe
Q 029077           89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEI  152 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~  152 (199)
                      +++|||++++.++..+. .|+..+....++.|+++|+||+|+.+..             . ..+...+++..+. +++++
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            99999999999999987 7999988888899999999999986532             2 2334567777776 49999


Q ss_pred             ccCCCCChHHHHHHHHHHH
Q 029077          153 SAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~  171 (199)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=5.4e-31  Score=186.86  Aligned_cols=167  Identities=25%  Similarity=0.400  Sum_probs=140.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ....++|+++|++|||||||+++|..+.+...+.++.+.+.. .....++..+.+.+||++|++.+...+..++..+|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            356799999999999999999999988887777777775544 3445677788999999999999888888899999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      ++|||++++.++..+..|+..+....   ++.|+++|+||+|+.++.... +...++...+++++++||++|.|++++|.
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence            99999999999999888887776653   478999999999998755443 44577788889999999999999999999


Q ss_pred             HHHHHHhCCCCC
Q 029077          166 YLARKLAGDPNL  177 (199)
Q Consensus       166 ~i~~~~~~~~~~  177 (199)
                      +|.+.+......
T Consensus       164 ~l~~~~~~~~~~  175 (199)
T 2gf0_A          164 ELLTLETRRNMS  175 (199)
T ss_dssp             HHHHHCSSSCEE
T ss_pred             HHHHHHhhhhcc
Confidence            999988765433

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.2e-30  Score=180.76  Aligned_cols=161  Identities=25%  Similarity=0.422  Sum_probs=134.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      +.+||+++|++|||||||+++|..+.+...+.++.+.+.. .....++..+.+.+||+||++.+......++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            4689999999999999999999988877777777765543 334556677899999999999988888889999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |+|++++.++..+..|+..+....   ++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|.+
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            999999999999888888777653   57999999999998753 333 3445677788899999999999999999999


Q ss_pred             HHHHHhC
Q 029077          167 LARKLAG  173 (199)
Q Consensus       167 i~~~~~~  173 (199)
                      |.+.+..
T Consensus       161 l~~~~~~  167 (172)
T 2erx_A          161 LLNLEKR  167 (172)
T ss_dssp             HHHTCCS
T ss_pred             HHHHHhh
Confidence            9987653

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=8.2e-31  Score=184.86  Aligned_cols=162  Identities=20%  Similarity=0.327  Sum_probs=127.2

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (199)
                      .....+.+||+++|.+|||||||+++|..+. +...+.+|.+......  .+  .++.+.+||++|++.+...+..++.+
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~--~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~   90 (190)
T 2h57_A           15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKF--KS--SSLSFTVFDMSGQGRYRNLWEHYYKE   90 (190)
T ss_dssp             ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEE--EC--SSCEEEEEEECCSTTTGGGGGGGGGG
T ss_pred             ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEE--EE--CCEEEEEEECCCCHHHHHHHHHHHhc
Confidence            3455778999999999999999999988766 4566777777443333  22  34789999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCCccccHHHHHHHH-----HcCCcEEEeccCC
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKS  156 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~  156 (199)
                      +|++++|+|++++.++..+..|+..+....    .+.|+++|+||+|+.+.....+......     ..++.++++||++
T Consensus        91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  170 (190)
T 2h57_A           91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIK  170 (190)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence            999999999999999999988888877653    5799999999999976543333333332     2356899999999


Q ss_pred             CCChHHHHHHHHHHHh
Q 029077          157 NYNFEKPFLYLARKLA  172 (199)
Q Consensus       157 ~~~v~~~~~~i~~~~~  172 (199)
                      |.|++++|++|.+.+.
T Consensus       171 ~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          171 GEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             TBTHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999998774

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=6.3e-31  Score=185.22  Aligned_cols=162  Identities=22%  Similarity=0.378  Sum_probs=130.9

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      ...+.+||+|+|.+|||||||+++|..+.+...+.+|.+.+.....    ...+.+.+||++|++.+...+..+++++|+
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPRFRSMWERYCRGVSA   93 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEE----ETTEEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEE----eCCEEEEEEECCCCHhHHHHHHHHHccCCE
Confidence            3456799999999999999999999988887778888887765432    356889999999999999888999999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHH-----HHHcCCcEEEeccCCCCChH
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFE  161 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~  161 (199)
                      +++|+|+++..++..+..|+..+...  ..+.|+++|+||+|+.+.....+....     +...++.++++||++|.|++
T Consensus        94 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           94 IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            99999999999999998888877654  368999999999999764322222211     11234579999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 029077          162 KPFLYLARKLAGD  174 (199)
Q Consensus       162 ~~~~~i~~~~~~~  174 (199)
                      ++|.+|.+.+...
T Consensus       174 ~l~~~l~~~~~~~  186 (188)
T 1zd9_A          174 ITLQWLIQHSKSR  186 (188)
T ss_dssp             HHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999877543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=2.1e-30  Score=182.10  Aligned_cols=159  Identities=17%  Similarity=0.267  Sum_probs=130.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+++|++|||||||+++|..+. ...+.+|.+........    ..+.+.+||+||++.+...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEH----RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEE----TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            578999999999999999999988776 66777888765544433    3588999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+..+..     ...+++++++||++|.|++++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  170 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  170 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence            999999999999998888877654  3689999999999997654333222221     134567999999999999999


Q ss_pred             HHHHHHHHhCC
Q 029077          164 FLYLARKLAGD  174 (199)
Q Consensus       164 ~~~i~~~~~~~  174 (199)
                      |++|.+.+.++
T Consensus       171 ~~~l~~~i~~~  181 (186)
T 1ksh_A          171 IDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhc
Confidence            99999998765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=3.1e-31  Score=185.69  Aligned_cols=161  Identities=22%  Similarity=0.304  Sum_probs=124.4

Q ss_pred             CCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccccccc
Q 029077            5 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI   84 (199)
Q Consensus         5 ~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~   84 (199)
                      +.++...+.+||+++|.+|||||||+++|..+.+ ..+.++.|........    .++.+.+||++|++.+...+..+++
T Consensus        13 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~   87 (181)
T 2h17_A           13 GLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYT   87 (181)
T ss_dssp             --------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEE----TTEEEEEEEESSSGGGTCGGGGGGT
T ss_pred             CccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEE----CCEEEEEEECCCCHhHHHHHHHHhc
Confidence            3445667889999999999999999999887776 5666777755433332    3488999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCC
Q 029077           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSN  157 (199)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~  157 (199)
                      ++|++++|+|+++..++..+..|+..+...  ..+.|+++|+||+|+.+.....+.....     ...++.++++||++|
T Consensus        88 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g  167 (181)
T 2h17_A           88 NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTG  167 (181)
T ss_dssp             TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence            999999999999999999998888887765  3689999999999997643322222221     224557999999999


Q ss_pred             CChHHHHHHHHHH
Q 029077          158 YNFEKPFLYLARK  170 (199)
Q Consensus       158 ~~v~~~~~~i~~~  170 (199)
                      .|++++|++|.+.
T Consensus       168 ~gi~~l~~~l~~~  180 (181)
T 2h17_A          168 EGLCQGLEWMMSR  180 (181)
T ss_dssp             BTHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHhh
Confidence            9999999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.7e-30  Score=184.85  Aligned_cols=163  Identities=20%  Similarity=0.325  Sum_probs=129.8

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCC--CCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-ccccccccccC
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIH   85 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~   85 (199)
                      .....+||+|+|++|||||||+++|....  +...+ ++.|.++....+.+++..+.+.+||++|.+. +......+++.
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~  111 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV  111 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence            34567999999999999999999987533  23332 3456566666677788889999999999876 45556677889


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChH
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFE  161 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      ++++|+|||++++.+|..+..|...+...  ..++|+++|+||+|+.+ +.+.. +...++...+++++++||++|.|++
T Consensus       112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~  191 (211)
T 2g3y_A          112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK  191 (211)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999999998887653  35799999999999975 33333 3346677888999999999999999


Q ss_pred             HHHHHHHHHHh
Q 029077          162 KPFLYLARKLA  172 (199)
Q Consensus       162 ~~~~~i~~~~~  172 (199)
                      ++|.+|++.+.
T Consensus       192 elf~~l~~~i~  202 (211)
T 2g3y_A          192 ELFEGIVRQVR  202 (211)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=9.8e-31  Score=184.02  Aligned_cols=160  Identities=23%  Similarity=0.307  Sum_probs=125.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+++|.+|||||||+++|..+.+. .+.+|.+........    .++.+.+||++|++.+...+..+++++|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEE----TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            56799999999999999999998877765 666777644433332    3488999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+.....     ...+++++++||++|.|++++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  168 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG  168 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHH
Confidence            999999999999999998888765  3689999999999998643333332222     234568999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 029077          164 FLYLARKLAGDP  175 (199)
Q Consensus       164 ~~~i~~~~~~~~  175 (199)
                      +++|++.+...+
T Consensus       169 ~~~l~~~~~~~~  180 (187)
T 1zj6_A          169 LEWMMSRLKIRL  180 (187)
T ss_dssp             HHHHHHHHCC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999886554

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.3e-32  Score=195.55  Aligned_cols=165  Identities=30%  Similarity=0.551  Sum_probs=135.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ....+||+|+|.+|||||||+++|..+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++++|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            35579999999999999999999888887777778888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccc--cHHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      ++|||+++..++..+..|+..+.... .+.|+++|+||+|+.+...  ..+...++...+++++++||++|.|++++|.+
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~  189 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  189 (199)
T ss_dssp             EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999887765 4789999999999975332  23445778888999999999999999999999


Q ss_pred             HHHHHhCC
Q 029077          167 LARKLAGD  174 (199)
Q Consensus       167 i~~~~~~~  174 (199)
                      |.+.+.+.
T Consensus       190 l~~~l~~~  197 (199)
T 3l0i_B          190 MAAEIKKR  197 (199)
T ss_dssp             HTTTTTTT
T ss_pred             HHHHHHHh
Confidence            98877643

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=1.3e-29  Score=175.52  Aligned_cols=159  Identities=21%  Similarity=0.339  Sum_probs=128.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+++|++|||||||+++|..+.+. .+.+|.+........    ....+.+||+||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTY----KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEE----TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEE----CCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            45799999999999999999998877764 456677655444333    3688999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHH-----HHHHcCCcEEEeccCCCCChHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +|+|++++.++.....|+..+....  .+.|+++|+||+|+.+.....+...     .+...+++++++||++|.|++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  159 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence            9999999999998888887776543  6899999999999976533222221     22334568999999999999999


Q ss_pred             HHHHHHHHhCC
Q 029077          164 FLYLARKLAGD  174 (199)
Q Consensus       164 ~~~i~~~~~~~  174 (199)
                      |.+|.+.+.++
T Consensus       160 ~~~l~~~i~~~  170 (171)
T 1upt_A          160 MEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhhc
Confidence            99999988764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=2e-30  Score=184.10  Aligned_cols=158  Identities=17%  Similarity=0.234  Sum_probs=119.3

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      ...+.+||+++|++|||||||+++|..+.+ ..+.+|.+.+..  .+.+++  +.+.+||+||++.++..+..+++.+|+
T Consensus        21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~   95 (198)
T 1f6b_A           21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAING   95 (198)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhcCCC-CccCCCCCceeE--EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCE
Confidence            345678999999999999999999876665 345667665433  333333  889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHHH-----------------cCCcE
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----------------KNLQY  149 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~-----------------~~~~~  149 (199)
                      +++|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+..+++..                 .+..+
T Consensus        96 ~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           96 IVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            99999999999999999998888654  368999999999999864333333344331                 34579


Q ss_pred             EEeccCCCCChHHHHHHHHHHH
Q 029077          150 YEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      ++|||++|.|++++|.+|.+.+
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            9999999999999999998643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=5e-30  Score=180.96  Aligned_cols=157  Identities=18%  Similarity=0.281  Sum_probs=123.1

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      ...+.+||+++|++|||||||+++|..+.+. .+.+|.+.....  +.++  ++.+.+||++|++.++..+..+++++|+
T Consensus        19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 1m2o_B           19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEE--LAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNG   93 (190)
T ss_dssp             -----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEE--EEET--TEEEEEEECCCSGGGTTSGGGGCTTCCE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEE--EEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            3466789999999999999999998877664 456677665433  3333  3889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHH------------HcCCcEEEecc
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------------KKNLQYYEISA  154 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~------------~~~~~~~~~s~  154 (199)
                      +++|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+..+...            ..+++++++||
T Consensus        94 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           94 IVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            99999999999999999998888654  36899999999999987333333333332            13467999999


Q ss_pred             CCCCChHHHHHHHHHH
Q 029077          155 KSNYNFEKPFLYLARK  170 (199)
Q Consensus       155 ~~~~~v~~~~~~i~~~  170 (199)
                      ++|.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=7.4e-31  Score=184.28  Aligned_cols=163  Identities=18%  Similarity=0.327  Sum_probs=123.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeEEEeeEEEEe---cCcEEEEEEEeCCCcccccccccccccCCc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      .+||+++|++|||||||+++|...  .+...+.+|.|.++.......   ++..+.+.+||++|++.+...+..+++.++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999998764  455566778887766655443   235678999999999998888888899999


Q ss_pred             EEEEEEeCCCh-hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH-----HHHHHHHHcCCc----EEEeccCCC
Q 029077           88 CAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-----KQVTFHRKKNLQ----YYEISAKSN  157 (199)
Q Consensus        88 ~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~-----~~~~~~~~~~~~----~~~~s~~~~  157 (199)
                      ++++|||++++ .++..+..|+..+....++.|+++|+||+|+.+.....     ....+++..+++    ++++||++|
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE  161 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence            99999999997 57999999999988776789999999999997643221     123455556776    999999999


Q ss_pred             C-ChHHHHHHHHHHHhCCC
Q 029077          158 Y-NFEKPFLYLARKLAGDP  175 (199)
Q Consensus       158 ~-~v~~~~~~i~~~~~~~~  175 (199)
                      . +++++++.|.+.+....
T Consensus       162 ~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          162 SDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             CHHHHHHHHHHHHHHHCC-
T ss_pred             chhHHHHHHHHHHHHhccc
Confidence            7 99999999998887543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=3.1e-29  Score=177.20  Aligned_cols=161  Identities=20%  Similarity=0.335  Sum_probs=126.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC--CCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-ccccccccccCCc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQ   87 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d   87 (199)
                      ...+||+++|++|||||||+++|...  .+...+ ++.|.+.....+.+++..+.+.+||++|.+. +......+++.++
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            45799999999999999999998743  233333 3455566666677788888999999999776 4556677788899


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      ++++|||++++.+|..+..|...+....  .+.|+++|+||.|+.+ +.... +...++...+++++++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988777643  5799999999999965 33333 334567778889999999999999999


Q ss_pred             HHHHHHHHh
Q 029077          164 FLYLARKLA  172 (199)
Q Consensus       164 ~~~i~~~~~  172 (199)
                      |.++++.+.
T Consensus       163 f~~l~~~~~  171 (192)
T 2cjw_A          163 FEGIVRQVR  171 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=6.5e-30  Score=179.04  Aligned_cols=159  Identities=17%  Similarity=0.300  Sum_probs=124.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      +...+||+++|++|||||||+++|..+. ...+.+|.|........  +  .+.+.+||++|++.++..+..+++.+|++
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~-~~~~~~t~g~~~~~~~~--~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   87 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASED-ISHITPTQGFNIKSVQS--Q--GFKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSC-CEEEEEETTEEEEEEEE--T--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcCC-CCcccCcCCeEEEEEEE--C--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            4567999999999999999999977553 34566777755433332  2  57899999999999988888899999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHH-----HHHcCCcEEEeccCCCCChHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      ++|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+..+.     +...+++++++||++|.|+++
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  167 (181)
T 1fzq_A           88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD  167 (181)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHH
Confidence            9999999999999988888877543  368999999999999765432222221     112346799999999999999


Q ss_pred             HHHHHHHHHhC
Q 029077          163 PFLYLARKLAG  173 (199)
Q Consensus       163 ~~~~i~~~~~~  173 (199)
                      +|.+|.+.+.+
T Consensus       168 l~~~l~~~~~~  178 (181)
T 1fzq_A          168 GMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHHHHHh
Confidence            99999987754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=8.7e-30  Score=180.01  Aligned_cols=159  Identities=21%  Similarity=0.313  Sum_probs=120.9

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ..+.+||+++|++|||||||+++|..+.+. .+.+|.+......    ....+.+.+||+||++.+...+..+++++|++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV----EYKNICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEEEE----EETTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEEEE----EECCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            467899999999999999999998776654 3455665433322    22558999999999999999888899999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHH-----HHHHcCCcEEEeccCCCCChHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      ++|+|++++.++..+..|+..+....  .+.|+++|+||+|+.+.....+...     .+...+++++++||++|.|+++
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  180 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYD  180 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHH
Confidence            99999999999999988888876543  5899999999999976432222211     1122345799999999999999


Q ss_pred             HHHHHHHHHhC
Q 029077          163 PFLYLARKLAG  173 (199)
Q Consensus       163 ~~~~i~~~~~~  173 (199)
                      +|++|++.+.+
T Consensus       181 l~~~l~~~i~~  191 (192)
T 2b6h_A          181 GLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHhc
Confidence            99999988753

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=7.2e-30  Score=175.69  Aligned_cols=155  Identities=24%  Similarity=0.326  Sum_probs=121.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||+++|..+.+.. +.+|.+.....    +....+.+.+||+||++.++..+..+++++|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEEE----EECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEEE----EEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999988777653 45666633222    2335688999999999999888888999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHH-----HHHcCCcEEEeccCCCCChHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |++++.++..+..|+..+...  .++.|+++|+||+|+.+.....+....     +...+++++++||++|.|++++|++
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence            999999999988888877653  368999999999999764322222111     1223457999999999999999999


Q ss_pred             HHHHHhC
Q 029077          167 LARKLAG  173 (199)
Q Consensus       167 i~~~~~~  173 (199)
                      |.+.+..
T Consensus       156 l~~~i~~  162 (164)
T 1r8s_A          156 LSNQLRN  162 (164)
T ss_dssp             HHHHC--
T ss_pred             HHHHHhh
Confidence            9988753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=3.2e-30  Score=180.56  Aligned_cols=158  Identities=20%  Similarity=0.300  Sum_probs=123.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+++|++|||||||++++..+.+ ..+.++.+........    ....+.+||++|++.+...+..++.++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEE----TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5789999999999999999999876665 5566677644433332    3488999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHH-----HcCCcEEEeccCCCCChHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+......     ..+++++++||++|.|++++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  170 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG  170 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence            999999999999999988888765  36899999999999976433232222221     23357999999999999999


Q ss_pred             HHHHHHHHhC
Q 029077          164 FLYLARKLAG  173 (199)
Q Consensus       164 ~~~i~~~~~~  173 (199)
                      +++|.+.+.+
T Consensus       171 ~~~l~~~~~~  180 (183)
T 1moz_A          171 LDWLIDVIKE  180 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=8.3e-30  Score=180.64  Aligned_cols=162  Identities=15%  Similarity=0.168  Sum_probs=120.3

Q ss_pred             CCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEe--eEEEEec-CcEEEEEEEeCCCcccccccc---
Q 029077            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTN-CGKIRFYCWDTAGQEKFGGLR---   79 (199)
Q Consensus         6 ~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~l~D~~g~~~~~~~~---   79 (199)
                      .+....+.+||+++|.+|||||||++++. +.+...  ++.+.+..  .....+. +..+.+.+||++|++.+....   
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   89 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVF-HKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY   89 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHH-SCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHH-hcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence            44566788999999999999999999755 444443  33333333  2333333 567899999999999987777   


Q ss_pred             cccccCCcEEEEEEeCCCh--hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc--------ccH-HHHHHHH----H
Q 029077           80 DGYYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKA-KQVTFHR----K  144 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~--------~~~-~~~~~~~----~  144 (199)
                      ..+++++|++|+|||++++  +++..+..|+..+....++.|+++|+||+|+.+..        +.. +...+++    .
T Consensus        90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence            7889999999999999997  66777777888776667899999999999986521        111 2235566    5


Q ss_pred             cCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077          145 KNLQYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       145 ~~~~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      .++.++++||++ .|++++|..|++.+
T Consensus       170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          170 LHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CCcceEEEEech-hhHHHHHHHHHHHh
Confidence            678899999999 99999999999875

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=2.5e-29  Score=177.07  Aligned_cols=160  Identities=19%  Similarity=0.275  Sum_probs=126.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+++|++|||||||+++|..+.+. .+.+|.+........    ..+.+.+||+||++.+...+..+++++|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQY----KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEE----TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEE----CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            57899999999999999999998766553 355666644333332    3688999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHH-----HHHHcCCcEEEeccCCCCChHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +|+|+++++++..+..|+..+....  .+.|+++|+||+|+.+.....+...     .+...+++++++||++|.|++++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  174 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG  174 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence            9999999999998888888776542  5899999999999976533222221     12233557999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 029077          164 FLYLARKLAGDP  175 (199)
Q Consensus       164 ~~~i~~~~~~~~  175 (199)
                      +++|.+.+.+..
T Consensus       175 ~~~l~~~i~~~~  186 (189)
T 2x77_A          175 MDWLVERLREQG  186 (189)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhcc
Confidence            999999886543

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.96  E-value=1.6e-28  Score=187.09  Aligned_cols=163  Identities=25%  Similarity=0.443  Sum_probs=139.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ...++|+++|.+|+|||||++++..+.+...+.++.+... ......++..+.+.+||++|++.+......+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            4568999999999999999999998888777778876444 445566778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCc-------------cc-cHHHHHHHHHcCC-cEEEecc
Q 029077           91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISA  154 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~-~~~~~~~~~~~~~-~~~~~s~  154 (199)
                      +|||++++.++..+. .|+..+....+++|+++|+||+|+.+.             .. ..+...+++..++ +++++||
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            999999999999887 788888887779999999999998542             22 2344577888887 8999999


Q ss_pred             CCCCChHHHHHHHHHHHhCC
Q 029077          155 KSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       155 ~~~~~v~~~~~~i~~~~~~~  174 (199)
                      ++|.|++++|..|.+.+...
T Consensus       312 ~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC-
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            99999999999999988754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.96  E-value=4.6e-28  Score=172.03  Aligned_cols=162  Identities=33%  Similarity=0.578  Sum_probs=138.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      ..++|+++|++|||||||+++|....+...+.++.|.+.....+.+++..+.+.+||++|++.++.....+++.++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            35899999999999999999999888877777888888777788888888999999999999988888888899999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      |+|+++..++..+..|+..+.... .+.|+++++||.|+.+. .. ..+...++...++.++++|++++.|++++|+.|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999888988776653 47899999999999753 22 2345678888899999999999999999999999


Q ss_pred             HHHhC
Q 029077          169 RKLAG  173 (199)
Q Consensus       169 ~~~~~  173 (199)
                      +.+.+
T Consensus       164 ~~~~~  168 (199)
T 2f9l_A          164 TEIYR  168 (199)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=1.3e-27  Score=168.67  Aligned_cols=160  Identities=33%  Similarity=0.576  Sum_probs=139.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      ..++|+++|++|||||||++++....+...+.++.+.++....+.+++..+.+.+||++|.+++...+..+++.++++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~  107 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL  107 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence            46899999999999999999999888888888899988888888888888999999999999988888888899999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      |+|+++..+++.+..|+..+.... .+.|+++++||.|+.+. .. ..+...++...++.++++|++++.+++++|+.|.
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999888988776643 47899999999999763 22 3345678888899999999999999999999998


Q ss_pred             HHH
Q 029077          169 RKL  171 (199)
Q Consensus       169 ~~~  171 (199)
                      +.+
T Consensus       188 ~~i  190 (191)
T 1oix_A          188 TEI  190 (191)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            865

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.93  E-value=1.9e-31  Score=190.19  Aligned_cols=161  Identities=27%  Similarity=0.480  Sum_probs=132.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ..+.+||+++|.+|||||||+++|..+.+...+.++.+... ......++..+.+.+||++|++.+...+..+++++|++
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            35779999999999999999999887777766666665333 33445566778899999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc-------------c-cHHHHHHHHHcCC-cEEEec
Q 029077           90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEIS  153 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~s  153 (199)
                      ++|||++++.++..+. .|+..+....++.|+++|+||+|+.+..             . ..+...+++..++ +++++|
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            9999999999999887 7888887776789999999999996532             1 1223456666776 899999


Q ss_pred             cCCCCChHHHHHHHHHHH
Q 029077          154 AKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~  171 (199)
                      |++|.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=5.3e-29  Score=183.25  Aligned_cols=166  Identities=20%  Similarity=0.262  Sum_probs=123.1

Q ss_pred             CccCCCceEEEEEcCC---------CCCHHHHHHHHhc---CCCCCccccce-eEEEeeEEE--------------EecC
Q 029077            7 QTVDYPSFKLVIVGDG---------GTGKTTFVKRHLT---GEFEKKYEPTI-GVEVHPLDF--------------FTNC   59 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~---------~~GKStli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~   59 (199)
                      .+..+..+||+|+|.+         |||||||+++|..   +.+...+.++. +.++....+              ..++
T Consensus        13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   92 (255)
T 3c5h_A           13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC   92 (255)
T ss_dssp             TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred             CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence            3455778999999999         9999999999987   44555555543 333222111              1345


Q ss_pred             cEEEEEEEe-----------------------CCCccccccccccccc---------------------CCcEEEEEEeC
Q 029077           60 GKIRFYCWD-----------------------TAGQEKFGGLRDGYYI---------------------HGQCAIIMFDV   95 (199)
Q Consensus        60 ~~~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~   95 (199)
                      ..+.+.+||                       ++|++++...+..++.                     ++|++|+|||+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            678899999                       6667777777777776                     79999999999


Q ss_pred             CCh--hhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHHH-cCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           96 TAR--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        96 ~~~--~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      +++  .++..+..|+..+...  ..+.|+++|+||+|+.+.....+...++.. .+++++++||++|.|++++|.+|++.
T Consensus       173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~  252 (255)
T 3c5h_A          173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL  252 (255)
T ss_dssp             BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            998  8999999999988765  368999999999999764333455566665 47899999999999999999999987


Q ss_pred             Hh
Q 029077          171 LA  172 (199)
Q Consensus       171 ~~  172 (199)
                      +.
T Consensus       253 l~  254 (255)
T 3c5h_A          253 ID  254 (255)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=6.8e-28  Score=183.23  Aligned_cols=160  Identities=23%  Similarity=0.317  Sum_probs=121.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ..+.+||+|+|.+|||||||+++|..+.+... .+|.+......    ....+.+.+|||+|++.+...+..+++.+|++
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~~----~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~v  236 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL  236 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEEE----EETTEEEEEEECC-----CCSHHHHHTTEEEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEEE----ecCcEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            35678999999999999999999877665433 35555544433    33568999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHH-----HHcCCcEEEeccCCCCChHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~v~~  162 (199)
                      |+|||+++..++..+..|+..+....  +++|+++|+||+|+.+.....+.....     ...+++++++||++|.|+++
T Consensus       237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            99999999999998888877765543  589999999999998754333322221     12345699999999999999


Q ss_pred             HHHHHHHHHhCC
Q 029077          163 PFLYLARKLAGD  174 (199)
Q Consensus       163 ~~~~i~~~~~~~  174 (199)
                      +|++|.+.+.+.
T Consensus       317 l~~~l~~~l~~~  328 (329)
T 3o47_A          317 GLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999988654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=8.1e-28  Score=165.92  Aligned_cols=154  Identities=17%  Similarity=0.191  Sum_probs=111.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc------ccccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI   84 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~   84 (199)
                      |+.++|+++|++|||||||+++|....+.....++.+.+.....+..+  +..+.+|||+|+..+..      ....+++
T Consensus         1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   78 (165)
T 2wji_A            1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYII   78 (165)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence            456899999999999999999988765543333333222223333333  36899999999887643      2244443


Q ss_pred             --CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077           85 --HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (199)
Q Consensus        85 --~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                        +++++++|+|+++.+.   ...|+..+..  .+.|+++|+||+|+.+. ....+...+++..+++++++||++|.|++
T Consensus        79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           79 NEKPDLVVNIVDATALER---NLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             HHCCSEEEEEEETTCHHH---HHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             cCCCCEEEEEecCCchhH---hHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence              7999999999988643   3456666655  37999999999998642 22223456777788999999999999999


Q ss_pred             HHHHHHHHHH
Q 029077          162 KPFLYLARKL  171 (199)
Q Consensus       162 ~~~~~i~~~~  171 (199)
                      ++|.+|.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998876

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.95  E-value=2.8e-27  Score=169.67  Aligned_cols=158  Identities=18%  Similarity=0.185  Sum_probs=112.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc-EEEEEEEeCCCcccccc-cccccccCCcE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-LRDGYYIHGQC   88 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~d~   88 (199)
                      .+.+||+++|++|||||||+++|..+.+...+.++. .....  +.+++. .+.+.+||+||++.+.. .+..+++.+|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            467999999999999999999999888776665433 33333  444444 68999999999998887 67888999999


Q ss_pred             EEEEEeCCChh-hHhcHHH-HHHHHHhh---cCCCcEEEEEeCCCCCCccccHHHHH----HHH----------------
Q 029077           89 AIIMFDVTARL-TYKNVPT-WHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVT----FHR----------------  143 (199)
Q Consensus        89 ~i~v~d~~~~~-s~~~~~~-~~~~l~~~---~~~~p~iiv~~K~D~~~~~~~~~~~~----~~~----------------  143 (199)
                      +++|+|+++.. ++..... |...+...   ..+.|+++|+||+|+.+.....+...    ...                
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999854 3555444 44444332   24789999999999976432221110    000                


Q ss_pred             -----------------Hc--CCcEEEeccCCC------CChHHHHHHHHHHH
Q 029077          144 -----------------KK--NLQYYEISAKSN------YNFEKPFLYLARKL  171 (199)
Q Consensus       144 -----------------~~--~~~~~~~s~~~~------~~v~~~~~~i~~~~  171 (199)
                                       ..  ++.|++|||++|      .|++++|.+|.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                             11  567999999999      99999999998753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.95  E-value=8.8e-27  Score=162.25  Aligned_cols=161  Identities=16%  Similarity=0.141  Sum_probs=116.0

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      ...+.++|+++|++|||||||+++|..+.+...+.++.+.+.....+..++  ..+.+||+||++.+...+..++..+|+
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   81 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI   81 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence            446779999999999999999999988777665555544444444444443  467899999999999998889999999


Q ss_pred             EEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHH-------cC--CcEEEeccCCCCC
Q 029077           89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------KN--LQYYEISAKSNYN  159 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~-------~~--~~~~~~s~~~~~~  159 (199)
                      +++|+|+++....... .++..+.  ..+.|+++|+||+|+.+... .+.......       .+  ++++++||++|.|
T Consensus        82 ~i~v~d~~~~~~~~~~-~~l~~~~--~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (178)
T 2lkc_A           82 VILVVAADDGVMPQTV-EAINHAK--AANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG  157 (178)
T ss_dssp             EEEEEETTCCCCHHHH-HHHHHHG--GGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred             EEEEEECCCCCcHHHH-HHHHHHH--hCCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence            9999999884221111 1222222  24899999999999976421 111222221       11  4799999999999


Q ss_pred             hHHHHHHHHHHHhCCC
Q 029077          160 FEKPFLYLARKLAGDP  175 (199)
Q Consensus       160 v~~~~~~i~~~~~~~~  175 (199)
                      ++++|.+|++.+....
T Consensus       158 v~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          158 LDHLLEMILLVSEMEE  173 (178)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhhhc
Confidence            9999999999876543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.95  E-value=9.3e-27  Score=175.52  Aligned_cols=158  Identities=21%  Similarity=0.308  Sum_probs=123.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCC---CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc-----ccccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGY   82 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~   82 (199)
                      +..+||+++|.+|||||||+++|+.+...   ..+.+|.+........  . +.+.+.+||+||++.+     ......+
T Consensus         1 ~~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~--~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   77 (307)
T 3r7w_A            1 PLGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF--L-GNMTLNLWDCGGQDVFMENYFTKQKDHI   77 (307)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEE--T-TTEEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEe--C-CceEEEEEECCCcHHHhhhhhhhHHHHH
Confidence            35689999999999999999998766322   2455666665554332  3 3689999999999887     6777888


Q ss_pred             ccCCcEEEEEEeCCChhhHhcHHHHHHH---HHhhcCCCcEEEEEeCCCCCC--cc-----c-cHHHHHHHHHcC---Cc
Q 029077           83 YIHGQCAIIMFDVTARLTYKNVPTWHRD---LCRVCENIPIVLCGNKVDVKN--RQ-----V-KAKQVTFHRKKN---LQ  148 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~---l~~~~~~~p~iiv~~K~D~~~--~~-----~-~~~~~~~~~~~~---~~  148 (199)
                      ++++|++|+|||+++..++..+..|...   +....++.|+++|+||+|+.+  ..     . ..+...+++..+   ++
T Consensus        78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~  157 (307)
T 3r7w_A           78 FQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI  157 (307)
T ss_dssp             HTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred             hccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence            8999999999999999999988776554   444467899999999999976  22     1 134457777776   78


Q ss_pred             EEEeccCCCCChHHHHHHHHHHHh
Q 029077          149 YYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       149 ~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      ++++||++ .++.++|..+++.+.
T Consensus       158 ~~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          158 GFPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             EEECCTTS-SHHHHHHHHHHHTTC
T ss_pred             EEEeeecC-ChHHHHHHHHHHHHc
Confidence            99999999 889999988887654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.95  E-value=1.1e-26  Score=168.30  Aligned_cols=164  Identities=12%  Similarity=0.090  Sum_probs=112.8

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc---------ccc
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLR   79 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~   79 (199)
                      .+...++|+|+|.+|||||||+++|+.+.+...  +..+.+..............+.+|||||.....         ...
T Consensus        25 ~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  102 (228)
T 2qu8_A           25 INPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTI  102 (228)
T ss_dssp             CCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHH
Confidence            346789999999999999999999886654311  122222222222222234789999999983210         112


Q ss_pred             cccccCCcEEEEEEeCCChhhHhc--HHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccH----HHHHHHHHcC--CcEE
Q 029077           80 DGYYIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKA----KQVTFHRKKN--LQYY  150 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~----~~~~~~~~~~--~~~~  150 (199)
                      ..++..+|++|+|+|++++.++..  ...|+..+....++.|+++|+||+|+.+. ....    ....++...+  ++++
T Consensus       103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (228)
T 2qu8_A          103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS  182 (228)
T ss_dssp             HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence            334678899999999999887752  23466666555568999999999999753 3322    2235666666  7899


Q ss_pred             EeccCCCCChHHHHHHHHHHHhCC
Q 029077          151 EISAKSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       151 ~~s~~~~~~v~~~~~~i~~~~~~~  174 (199)
                      ++||++|.|++++|.+|++.+...
T Consensus       183 ~~SA~~g~gi~~l~~~l~~~i~~~  206 (228)
T 2qu8_A          183 SFSTLTGVGVEQAKITACELLKND  206 (228)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988643

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=2.9e-26  Score=172.85  Aligned_cols=177  Identities=16%  Similarity=0.156  Sum_probs=130.7

Q ss_pred             CCCccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc-EEEEEEEeCCCccccc-------
Q 029077            5 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG-------   76 (199)
Q Consensus         5 ~~~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~-------   76 (199)
                      +..+.+++.-.|+++|.+|||||||+|+|++..+. ...+..+++........... ...+.+|||||.....       
T Consensus         2 ~~~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~   80 (308)
T 3iev_A            2 HHHHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS-IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGH   80 (308)
T ss_dssp             -----CCEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHH
T ss_pred             CCCCCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc-ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHH
Confidence            34567788899999999999999999998866543 23334444444444444444 7889999999986544       


Q ss_pred             ---ccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC-CccccHHH-HHHHHHcC--CcE
Q 029077           77 ---GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKN--LQY  149 (199)
Q Consensus        77 ---~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~-~~~~~~~~-~~~~~~~~--~~~  149 (199)
                         .....++..+|++++|+|+++..++.....|+..+...  +.|+++|+||+|+. +.....+. ..+....+  ..+
T Consensus        81 ~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i  158 (308)
T 3iev_A           81 SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI  158 (308)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred             HHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence               34456678999999999999988777777777777664  79999999999997 44443333 35566654  779


Q ss_pred             EEeccCCCCChHHHHHHHHHHHhCCCCCceecCCC
Q 029077          150 YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPA  184 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~  184 (199)
                      +++||++|.|++++++.|.+.+.+.+.....+..+
T Consensus       159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~t  193 (308)
T 3iev_A          159 VPISALKGANLDELVKTILKYLPEGEPLFPEDMIT  193 (308)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCB
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCccCCCCCCccccc
Confidence            99999999999999999999998877654444333

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=1.4e-26  Score=162.65  Aligned_cols=161  Identities=16%  Similarity=0.196  Sum_probs=118.5

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc------ccccc
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGY   82 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~   82 (199)
                      .+++.++|+++|++|||||||+++|....+.....++.+.+.....+..+  ...+.+||+||+..+..      ....+
T Consensus         3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (188)
T 2wjg_A            3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDY   80 (188)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHH
Confidence            35678999999999999999999988655433333433333333334333  47899999999887642      23444


Q ss_pred             cc--CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCC
Q 029077           83 YI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYN  159 (199)
Q Consensus        83 ~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      +.  .++++++|+|.++   +.....|+..+..  .+.|+++|+||+|+.+. ....+...+++..+++++++||++|.|
T Consensus        81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  155 (188)
T 2wjg_A           81 IINEKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMG  155 (188)
T ss_dssp             HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             HhccCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCC
Confidence            43  5899999999875   4455667766655  48899999999998653 233345567777889999999999999


Q ss_pred             hHHHHHHHHHHHhCCCC
Q 029077          160 FEKPFLYLARKLAGDPN  176 (199)
Q Consensus       160 v~~~~~~i~~~~~~~~~  176 (199)
                      ++++|.++++.+.+..+
T Consensus       156 v~~l~~~i~~~~~~~~~  172 (188)
T 2wjg_A          156 IEELKKAISIAVKDKKT  172 (188)
T ss_dssp             HHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHhccC
Confidence            99999999999876653

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.94  E-value=1.5e-27  Score=178.76  Aligned_cols=153  Identities=14%  Similarity=0.134  Sum_probs=113.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC---ccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc---cccccccCCcE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQC   88 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~   88 (199)
                      ||+++|+.|||||||++++..+....   .+.+|.|.+....     +..+.+++|||+|+++|+.   .+..+++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v-----~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF-----STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE-----CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE-----ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999866443322   2456777665542     2458899999999999964   35788999999


Q ss_pred             EEEEEeCCCh--hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc--------ccHH-HHHHHHH----cCCcEEEec
Q 029077           89 AIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKAK-QVTFHRK----KNLQYYEIS  153 (199)
Q Consensus        89 ~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~--------~~~~-~~~~~~~----~~~~~~~~s  153 (199)
                      +|+|||++++  ++......|+..+....++.|++++|||+|+.+..        +..+ ..++++.    .++.|++||
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS  155 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS  155 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence            9999999997  23333334455555556899999999999997532        2222 2244553    578899999


Q ss_pred             cCCCCChHHHHHHHHHHHhC
Q 029077          154 AKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~  173 (199)
                      |++ .++.+.|..+++.+..
T Consensus       156 Akd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          156 IFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             SSS-SHHHHHHHHHHTTSST
T ss_pred             cCC-CcHHHHHHHHHHHHHh
Confidence            998 5899999999987753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.94  E-value=3.4e-26  Score=161.65  Aligned_cols=157  Identities=13%  Similarity=0.180  Sum_probs=106.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC----------cccccccc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR   79 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~   79 (199)
                      ....++|+++|.+|||||||+++|+.+.+...+.++.+.+........++   .+.+||+||          ++.+....
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            45679999999999999999999887766666666766655544444433   589999999          55555556


Q ss_pred             cccccCC---cEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH-HH----HHHHcCCcEEE
Q 029077           80 DGYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VT----FHRKKNLQYYE  151 (199)
Q Consensus        80 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~-~~----~~~~~~~~~~~  151 (199)
                      ..+++.+   |++++|+|++++.++.... +...+..  .+.|+++|+||+|+.+....... .+    +....+.++++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL  173 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence            6666666   9999999999876655432 2222222  48999999999999764433221 12    22234578999


Q ss_pred             eccCCCCChHHHHHHHHHHHh
Q 029077          152 ISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      +||++|.|++++|++|.+.+.
T Consensus       174 ~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          174 FSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEccCCCCHHHHHHHHHHHhc
Confidence            999999999999999998764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.94  E-value=1.2e-26  Score=187.01  Aligned_cols=165  Identities=21%  Similarity=0.297  Sum_probs=123.6

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEE--------EEecCcEEEEEEEeCCCccccccccc
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--------FFTNCGKIRFYCWDTAGQEKFGGLRD   80 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (199)
                      .....+||+++|.+|||||||+++|..+.+...+.+|.|.+.....        ...++..+.+.+||++|++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            4578899999999999999999999988887777888887666432        12233468999999999999999999


Q ss_pred             ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCC
Q 029077           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNY  158 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      .+++.+|++|+|+|+++.   +....|...+....++.|+++|+||+|+.+. .... +....+...+.+++++||++|.
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            999999999999998754   6678899999888788999999999999763 3333 3446677778899999999999


Q ss_pred             ChHHHHHHHHHHHhCCCC
Q 029077          159 NFEKPFLYLARKLAGDPN  176 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~~~~  176 (199)
                      |+++++..|.+.+.+.+.
T Consensus       194 gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          194 GVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             -CTTHHHHHHHHHTCTTS
T ss_pred             CHHHHHHHHHHHHhcccc
Confidence            999999999999987654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=4.3e-26  Score=167.81  Aligned_cols=156  Identities=13%  Similarity=0.089  Sum_probs=116.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc------cccc-
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY-   83 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~------~~~~-   83 (199)
                      ++.++|+++|.+|||||||+|+|.+..+.....+  |++.......+......+.+||+||...+....      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~p--g~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWP--GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECT--TSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4578999999999999999999886554322222  334333444444445789999999988776532      4444 


Q ss_pred             -cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077           84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (199)
Q Consensus        84 -~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                       ..+|++++|+|+++.++.   ..|...+...  +.|+++|+||+|+.+ +....+...+++..+++++++||++|.|++
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~  155 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE  155 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence             589999999999986543   3455555543  899999999999865 233334567788889999999999999999


Q ss_pred             HHHHHHHHHHhC
Q 029077          162 KPFLYLARKLAG  173 (199)
Q Consensus       162 ~~~~~i~~~~~~  173 (199)
                      ++|.++.+.+..
T Consensus       156 el~~~i~~~~~~  167 (258)
T 3a1s_A          156 ELKEKIVEYAQK  167 (258)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhc
Confidence            999999998753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.93  E-value=5.6e-26  Score=155.66  Aligned_cols=148  Identities=22%  Similarity=0.176  Sum_probs=100.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEE--EeeEEEEecCcEEEEEEEeCCCcccc-------ccccccccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYI   84 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~   84 (199)
                      .||+++|++|||||||+++|..+.+.. ..+..+.+  ........+  +..+.+||+||...+       ......+++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   78 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAV-VADVPGVTRDLKEGVVETD--RGRFLLVDTGGLWSGDKWEKKIQEKVDRALE   78 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEET--TEEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeee-ccCCCCceecceEEEEEeC--CceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence            589999999999999999988765421 11222222  222333333  347899999998763       333455678


Q ss_pred             CCcEEEEEEeCCChhhHhcHHHHH-HHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cEEEeccCCCCChHH
Q 029077           85 HGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK  162 (199)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~  162 (199)
                      .+|++++|+|++++.+..  ..++ ..+..  .+.|+++|+||+|+.+..  .+..+++ ..++ +++++||++|.|+++
T Consensus        79 ~~~~~i~v~d~~~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~  151 (161)
T 2dyk_A           79 DAEVVLFAVDGRAELTQA--DYEVAEYLRR--KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEE  151 (161)
T ss_dssp             TCSEEEEEEESSSCCCHH--HHHHHHHHHH--HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHH
T ss_pred             hCCEEEEEEECCCcccHh--HHHHHHHHHh--cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHH
Confidence            999999999999863322  2222 22222  389999999999997652  2222333 4566 799999999999999


Q ss_pred             HHHHHHHHH
Q 029077          163 PFLYLARKL  171 (199)
Q Consensus       163 ~~~~i~~~~  171 (199)
                      +|++|.+.+
T Consensus       152 l~~~l~~~l  160 (161)
T 2dyk_A          152 LLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999998865

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.93  E-value=3.4e-25  Score=156.30  Aligned_cols=158  Identities=16%  Similarity=0.204  Sum_probs=110.7

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC----------ccccc
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFG   76 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~   76 (199)
                      +.+....+||+++|++|||||||+++|+.+. .....++.+.+........+   ..+.+||+||          .+.+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~   92 (195)
T 3pqc_A           17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWK   92 (195)
T ss_dssp             CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred             hCCCCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHH
Confidence            3445678899999999999999999988765 34445555555444333332   2477999999          44555


Q ss_pred             ccccccccCC---cEEEEEEeCCChhhH--hcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH----HHHHHHHH-cC
Q 029077           77 GLRDGYYIHG---QCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK-KN  146 (199)
Q Consensus        77 ~~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~----~~~~~~~~-~~  146 (199)
                      .....+++.+   +++++|+|+++..+.  ..+..|+...     +.|+++|+||+|+.+.....    +...++.. ..
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  167 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE  167 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence            5555565554   999999998875332  2333343332     79999999999997543222    22344444 34


Q ss_pred             CcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          147 LQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       147 ~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      ++++++||++|.|++++|++|.+.+.+
T Consensus       168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          168 YTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            789999999999999999999998754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.93  E-value=2e-26  Score=162.01  Aligned_cols=156  Identities=15%  Similarity=0.186  Sum_probs=111.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC-----------ccccccccccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLRDGY   82 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~   82 (199)
                      +||+++|++|||||||+++|..+.+...+.++.  +.........    .+.+||+||           ++.+......+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV--TRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTC--TTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCc--cceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            689999999999999999998877665554433  2222223222    688999999           45555566666


Q ss_pred             ccC-CcEEEEEEeCCChhhHhcH-HHHHHH--------HHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCc--
Q 029077           83 YIH-GQCAIIMFDVTARLTYKNV-PTWHRD--------LCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ--  148 (199)
Q Consensus        83 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~--  148 (199)
                      ++. ++++++|+++.+..++..+ ..|...        +...  ..+.|+++|+||+|+.+.. ..+...+++..+.+  
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~  154 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLS  154 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGG
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhh
Confidence            666 7777777777777777665 455542        2221  2589999999999998654 33344666777654  


Q ss_pred             -----EEEeccCCCCChHHHHHHHHHHHhCCCC
Q 029077          149 -----YYEISAKSNYNFEKPFLYLARKLAGDPN  176 (199)
Q Consensus       149 -----~~~~s~~~~~~v~~~~~~i~~~~~~~~~  176 (199)
                           ++++||++|.|++++|.+|.+.+.+..+
T Consensus       155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          155 EIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             ccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence                 7999999999999999999998876543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=3.6e-26  Score=158.70  Aligned_cols=154  Identities=15%  Similarity=0.123  Sum_probs=107.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc--------ccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGY   82 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~   82 (199)
                      +.++|+++|++|||||||+++|...... ....+....+.....+.+++  ..+.+||++|...+....        ..+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4589999999999999999998765432 11112222222333344443  458899999986543211        135


Q ss_pred             ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      ++.+|++++|+|++++.++. ...|+..+.... .++|+++|+||+|+.+....     ++...+.+++++||++|.|++
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~~SA~~g~gv~  154 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG-----MSEVNGHALIRLSARTGEGVD  154 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----EEEETTEEEEECCTTTCTTHH
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh-----hhhccCCceEEEeCCCCCCHH
Confidence            78999999999999988876 456777666554 47999999999998543211     122246789999999999999


Q ss_pred             HHHHHHHHHHhC
Q 029077          162 KPFLYLARKLAG  173 (199)
Q Consensus       162 ~~~~~i~~~~~~  173 (199)
                      ++|.+|.+.+..
T Consensus       155 ~l~~~l~~~~~~  166 (172)
T 2gj8_A          155 VLRNHLKQSMGF  166 (172)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHHhhh
Confidence            999999987753

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=1.3e-25  Score=166.23  Aligned_cols=153  Identities=14%  Similarity=0.122  Sum_probs=115.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc------ccccccc--
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI--   84 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~~--   84 (199)
                      .++|+++|++|||||||+|+|.+......  ...|+++......+.. ...+.+||+||...+..      ....++.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~--~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVG--NWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCC--SSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            57999999999999999999886543222  2235555555555555 67899999999887653      3344554  


Q ss_pred             CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      .+|++++|+|+++.+++   ..|...+..  .+.|+++|+||+|+.+. ....+...+++.++++++++||++|.|++++
T Consensus        80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el  154 (272)
T 3b1v_A           80 RADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV  154 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence            69999999999886543   345555554  38999999999998642 3333445677788999999999999999999


Q ss_pred             HHHHHHHHhC
Q 029077          164 FLYLARKLAG  173 (199)
Q Consensus       164 ~~~i~~~~~~  173 (199)
                      |.++.+.+..
T Consensus       155 ~~~i~~~~~~  164 (272)
T 3b1v_A          155 VKKAAHTTTS  164 (272)
T ss_dssp             HHHHHHSCTT
T ss_pred             HHHHHHHHhh
Confidence            9999887643

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.92  E-value=6.3e-26  Score=168.39  Aligned_cols=157  Identities=14%  Similarity=0.142  Sum_probs=112.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc----------cc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RD   80 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~   80 (199)
                      |++++|+++|.+|||||||+|+|.+..+.....+  |++.......+......+.+||+||...+...          ..
T Consensus         1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~--g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~   78 (274)
T 3i8s_A            1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWA--GVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (274)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHTTCEEEEECT--TSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCcccCCCC--CeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHH
Confidence            4679999999999999999999886654322223  33333333333333457889999998776532          12


Q ss_pred             cc--ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCC
Q 029077           81 GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSN  157 (199)
Q Consensus        81 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                      .+  ...+|++++|+|+++.+....+   ...+...  +.|+++|+||+|+.+. ........+++..+++++++||++|
T Consensus        79 ~~~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           79 HYILSGDADLLINVVDASNLERNLYL---TLQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGG
T ss_pred             HHHhhcCCCEEEEEecCCChHHHHHH---HHHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            22  2689999999999986654433   3334333  8999999999998653 2223345677778899999999999


Q ss_pred             CChHHHHHHHHHHHhCC
Q 029077          158 YNFEKPFLYLARKLAGD  174 (199)
Q Consensus       158 ~~v~~~~~~i~~~~~~~  174 (199)
                      .|+++++.+|.+.+...
T Consensus       154 ~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          154 RGIEALKLAIDRYKANE  170 (274)
T ss_dssp             HHHHHHHHHHHTCCCCC
T ss_pred             CCHHHHHHHHHHHHhcC
Confidence            99999999998877654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=2.2e-25  Score=163.75  Aligned_cols=150  Identities=15%  Similarity=0.155  Sum_probs=109.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc----------cccccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRDGYY   83 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~   83 (199)
                      .+|+++|.+|||||||+|+|.+........+....+.....+..+  +..+.+||+||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~--~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG--EHLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET--TEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC--CeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            389999999999999999988665433333333333444444433  34889999999877654          234455


Q ss_pred             --cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-ccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077           84 --IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNF  160 (199)
Q Consensus        84 --~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                        .++|++|+|+|+++.+.+..+..+   +...  +.|+++|+||+|+.+.. .......+++..+++++++||++|.|+
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~~--~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi  154 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LFEL--GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI  154 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HTTS--CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HHHc--CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence              889999999999987655443333   3332  79999999999986532 223344577778999999999999999


Q ss_pred             HHHHHHHHHH
Q 029077          161 EKPFLYLARK  170 (199)
Q Consensus       161 ~~~~~~i~~~  170 (199)
                      ++++.+|.+.
T Consensus       155 ~el~~~i~~~  164 (256)
T 3iby_A          155 PALQQSLLHC  164 (256)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhh
Confidence            9999999887

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=4.2e-25  Score=159.27  Aligned_cols=163  Identities=17%  Similarity=0.054  Sum_probs=110.5

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcc----------cccc
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQE----------KFGG   77 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~----------~~~~   77 (199)
                      +....++|+|+|..|||||||+++|+..........+.|++......... .....+.+|||||..          .+..
T Consensus        25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            34567899999999999999999988765333334444444443334443 445788999999943          2233


Q ss_pred             cccccccC---CcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH----HHHH-HHH------
Q 029077           78 LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVT-FHR------  143 (199)
Q Consensus        78 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~----~~~~-~~~------  143 (199)
                      ....++..   +|++++|+|+++..+. ....++..+..  .+.|+++|+||+|+.+.....    +... +..      
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  181 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY  181 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence            44444444   7889999999875332 12334444444  378999999999997643321    1112 222      


Q ss_pred             HcCCcEEEeccCCCCChHHHHHHHHHHHhCC
Q 029077          144 KKNLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       144 ~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~  174 (199)
                      ....+++++||++|.|+++++.+|.+.+...
T Consensus       182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          182 AGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence            1567899999999999999999999988644

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=1.6e-24  Score=160.72  Aligned_cols=160  Identities=17%  Similarity=0.125  Sum_probs=116.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc------cccccc-
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY-   83 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~-   83 (199)
                      |+.++|+++|++|||||||+++|.+..+.....++.+.+.........  +..+.+||+||...+..      ....++ 
T Consensus         1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   78 (271)
T 3k53_A            1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR--EKEFLVVDLPGIYSLTAHSIDELIARNFIL   78 (271)
T ss_dssp             CCCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET--TEEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC--CceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence            457899999999999999999988665533333444444444444333  35689999999887665      334444 


Q ss_pred             -cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077           84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (199)
Q Consensus        84 -~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                       .++|++++|+|+++.+.   ...|...+... ...|+++|+||+|+.+. ........+.+..+++++++|+++|.|+.
T Consensus        79 ~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           79 DGNADVIVDIVDSTCLMR---NLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             TTCCSEEEEEEEGGGHHH---HHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             ccCCcEEEEEecCCcchh---hHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHH
Confidence             68999999999988642   23344444443 23999999999998642 22223556777889999999999999999


Q ss_pred             HHHHHHHHHHhCCCC
Q 029077          162 KPFLYLARKLAGDPN  176 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~  176 (199)
                      +++..+.+.+.....
T Consensus       155 ~l~~~i~~~~~~~~~  169 (271)
T 3k53_A          155 ELKRMIALMAEGKVT  169 (271)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHhcccc
Confidence            999999998875543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.91  E-value=3.6e-24  Score=160.69  Aligned_cols=162  Identities=19%  Similarity=0.145  Sum_probs=112.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--------cccccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGY   82 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~   82 (199)
                      .+..+|+++|.+|||||||+|+|+...+.. ..+..+++..............+.+|||||...        +......+
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~i-vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAP-ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceee-ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            456789999999999999999988765531 112222232222222333567899999999876        33344567


Q ss_pred             ccCCcEEEEEEeCCChhhHhcHHHHH-HHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHH-cC-CcEEEeccCCCCC
Q 029077           83 YIHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KN-LQYYEISAKSNYN  159 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~-~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~-~~-~~~~~~s~~~~~~  159 (199)
                      ++.+|++++|+|++++.+..  ..|+ ..+....++.|+++|+||+|+.+....  ....... .+ .+++++||++|.|
T Consensus        84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~g  159 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEE--AMKAYHELLPEAEPRMLSALDERQ  159 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH--HHHHHHHTSTTSEEEECCTTCHHH
T ss_pred             HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHH--HHHHHHHhcCcCcEEEEeCCCCCC
Confidence            88999999999998764332  3444 445444457999999999999754320  1122222 22 4689999999999


Q ss_pred             hHHHHHHHHHHHhCCCCC
Q 029077          160 FEKPFLYLARKLAGDPNL  177 (199)
Q Consensus       160 v~~~~~~i~~~~~~~~~~  177 (199)
                      ++++++.|.+.+.+.+..
T Consensus       160 v~~l~~~l~~~l~~~~~~  177 (301)
T 1wf3_A          160 VAELKADLLALMPEGPFF  177 (301)
T ss_dssp             HHHHHHHHHTTCCBCCCS
T ss_pred             HHHHHHHHHHhcccCCCC
Confidence            999999999988766654

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=1.2e-23  Score=166.45  Aligned_cols=158  Identities=15%  Similarity=0.070  Sum_probs=98.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc--------cccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYY   83 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~~   83 (199)
                      ..++|+++|.+|||||||+|+|+.... ....+..|++.......+....+.+.+|||||...+....        ..++
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            357899999999999999999775432 1222233444333322222345789999999987755433        3367


Q ss_pred             cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      ..+|++++|+|++++.++..+..+...+.. ..+.|+++|+||+|+.+...... ..+......+++++||++|.|++++
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~~~-~~l~~~~~~~~i~vSAktg~GI~eL  388 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADALI-RAIADGTGTEVIGISALNGDGIDTL  388 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHHH-HHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccchhH-HHHHhcCCCceEEEEECCCCCHHHH
Confidence            899999999999998887654444433332 34899999999999976443221 2233332368999999999999999


Q ss_pred             HHHHHHHHh
Q 029077          164 FLYLARKLA  172 (199)
Q Consensus       164 ~~~i~~~~~  172 (199)
                      +++|.+.+.
T Consensus       389 ~~~i~~~~~  397 (476)
T 3gee_A          389 KQHMGDLVK  397 (476)
T ss_dssp             HHHHTHHHH
T ss_pred             HHHHHHHHh
Confidence            999999887

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=3.6e-24  Score=166.80  Aligned_cols=160  Identities=17%  Similarity=0.181  Sum_probs=112.4

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEe--eEEEEecCcEEEEEEEeCCCcccccccc------
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFGGLR------   79 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~------   79 (199)
                      .+....++|+|+|..|+|||||+++|+...+. ......|++..  .......+. ..+.+|||||+..+....      
T Consensus        29 ~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~-~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~  106 (423)
T 3qq5_A           29 PDAGFRRYIVVAGRRNVGKSSFMNALVGQNVS-IVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEK  106 (423)
T ss_dssp             ---CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHH
Confidence            34567899999999999999999997765542 11223333322  223333332 388999999998776542      


Q ss_pred             -cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCC
Q 029077           80 -DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY  158 (199)
Q Consensus        80 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                       ..++..+|++|+|+|+....   ....|+..+...  +.|+++|+||+|+.+.........++...+++++++||++|.
T Consensus       107 ~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~  181 (423)
T 3qq5_A          107 ARRVFYRADCGILVTDSAPTP---YEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKK  181 (423)
T ss_dssp             HHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTT
T ss_pred             HHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCC
Confidence             34678999999999984332   234566666665  899999999999987665555556666778899999999999


Q ss_pred             ChHHHHHHHHHHHhCC
Q 029077          159 NFEKPFLYLARKLAGD  174 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~~  174 (199)
                      |++++|++|.+.+.+.
T Consensus       182 gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          182 GFDDIGKTISEILPGD  197 (423)
T ss_dssp             STTTHHHHHHHHSCCC
T ss_pred             CHHHHHHHHHHhhhhh
Confidence            9999999999999655

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.90  E-value=3.6e-23  Score=159.06  Aligned_cols=159  Identities=21%  Similarity=0.197  Sum_probs=116.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCc--cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc---------cc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LR   79 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~   79 (199)
                      ...++|+++|++|||||||+++|........  ...|.+....    ........+.+|||+|......         ..
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  240 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVG----QFEDGYFRYQIIDTPGLLDRPISERNEIEKQAI  240 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEE----EEEETTEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEE----EEEecCceEEEEeCCCccccchhhhhHHHHHHH
Confidence            5678999999999999999999776543211  1112222211    1122346789999999754321         11


Q ss_pred             cccccCCcEEEEEEeCCChh--hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCC
Q 029077           80 DGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN  157 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                      ..+...+|++++|+|+++..  ++.....|+..+.....+.|+++|+||.|+.+.....+...++...+.+++++||++|
T Consensus       241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g  320 (357)
T 2e87_A          241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKG  320 (357)
T ss_dssp             HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTT
T ss_pred             HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCC
Confidence            23445799999999998876  5677778888887765689999999999998754334455666677889999999999


Q ss_pred             CChHHHHHHHHHHHhC
Q 029077          158 YNFEKPFLYLARKLAG  173 (199)
Q Consensus       158 ~~v~~~~~~i~~~~~~  173 (199)
                      .|+++++.+|.+.+..
T Consensus       321 ~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          321 TGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             BTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999999999988753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.90  E-value=1.7e-24  Score=155.58  Aligned_cols=142  Identities=17%  Similarity=0.175  Sum_probs=101.7

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCc---cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~   85 (199)
                      .....++|+++|++|||||||+++|..+.+...   +.++.+.         ......+.+||+||++.++..+..+++.
T Consensus         8 ~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   78 (218)
T 1nrj_B            8 QKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKT   78 (218)
T ss_dssp             --CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHh
Confidence            356789999999999999999999887765432   2233221         1145678999999999988888888776


Q ss_pred             ----CcEEEEEEeCC-ChhhHhcHHHHHHHHHhh-----cCCCcEEEEEeCCCCCCcccc--------HHHHHHHHHcCC
Q 029077           86 ----GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKNL  147 (199)
Q Consensus        86 ----~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~-----~~~~p~iiv~~K~D~~~~~~~--------~~~~~~~~~~~~  147 (199)
                          ++++|+|+|++ +..++.....|+..+...     ..++|+++|+||+|+.+....        .+...++...+.
T Consensus        79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~  158 (218)
T 1nrj_B           79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK  158 (218)
T ss_dssp             HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence                89999999999 888888888888777653     258999999999999764432        223355566677


Q ss_pred             cEEEeccCCCCC
Q 029077          148 QYYEISAKSNYN  159 (199)
Q Consensus       148 ~~~~~s~~~~~~  159 (199)
                      .++++|+++|.+
T Consensus       159 ~~~~~Sa~~~~~  170 (218)
T 1nrj_B          159 SLNEVERKINEE  170 (218)
T ss_dssp             HHHC--------
T ss_pred             cccccccccccc
Confidence            899999998865

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.89  E-value=3.2e-22  Score=156.03  Aligned_cols=165  Identities=17%  Similarity=0.103  Sum_probs=114.8

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeE-------EE---------Ee---cCcEEEEEEE
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL-------DF---------FT---NCGKIRFYCW   67 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~l~   67 (199)
                      ++...+.++|+++|..++|||||+++|......... .....+....       ..         ..   ......+.+|
T Consensus         2 ~~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii   80 (403)
T 3sjy_A            2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFI   80 (403)
T ss_dssp             CCCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEE
T ss_pred             CCccCCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEE
Confidence            345677899999999999999999997753322110 0000000000       00         00   1123789999


Q ss_pred             eCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH----HHHHH
Q 029077           68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFHR  143 (199)
Q Consensus        68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~----~~~~~  143 (199)
                      ||||++.+.......+..+|++++|+|+++..++.....++..+... ...|+++|+||+|+.+.....+.    .++..
T Consensus        81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             ECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            99999999988888999999999999999876566666666555443 34689999999999764322221    22222


Q ss_pred             H---cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          144 K---KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       144 ~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      .   .+++++++||++|.|+++++++|.+.+..
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence            2   25689999999999999999999987753

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=7.7e-23  Score=155.56  Aligned_cols=157  Identities=19%  Similarity=0.251  Sum_probs=113.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC-Ccc-ccceeEEEeeEEEEecCcEEEEEEEeCCCccc----ccccccccc---cC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFE-KKY-EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDGYY---IH   85 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~---~~   85 (199)
                      +|+|+|.+|||||||+++|...... ..+ ..|......  .+.+++ ...+.+||+||...    +..+...++   ..
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~  236 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER  236 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence            6899999999999999997754321 111 122221111  122222 25789999999532    333444444   45


Q ss_pred             CcEEEEEEeCCC---hhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHHHHHHHHHcC--CcEEEeccCCC
Q 029077           86 GQCAIIMFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSN  157 (199)
Q Consensus        86 ~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~  157 (199)
                      ++++|+|+|+++   +.++..+..|...+..+.   .++|+++|+||+|+.+..  .....+.+...  .+++++||+++
T Consensus       237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~~~v~~iSA~tg  314 (342)
T 1lnz_A          237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTR  314 (342)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHHhhcCCCEEEEECCCC
Confidence            999999999998   778888888998888764   479999999999997643  22234555555  68999999999


Q ss_pred             CChHHHHHHHHHHHhCCCC
Q 029077          158 YNFEKPFLYLARKLAGDPN  176 (199)
Q Consensus       158 ~~v~~~~~~i~~~~~~~~~  176 (199)
                      .|+++++.+|.+.+.+.+.
T Consensus       315 ~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          315 EGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             STTHHHHHHHHHHHTSCCC
T ss_pred             cCHHHHHHHHHHHHhhCcc
Confidence            9999999999999987765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=4.5e-23  Score=162.36  Aligned_cols=160  Identities=14%  Similarity=0.136  Sum_probs=107.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----------ccccc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLR   79 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~   79 (199)
                      +...+||+++|.+|||||||+|+|+..... ...+..|++.......+...+..+.+|||||+..          +....
T Consensus       172 ~~~~~ki~lvG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          172 NEEVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTTE-EEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             cccCcEEEEEcCCCCCHHHHHHHHhCCCce-eecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHH
Confidence            346799999999999999999998865432 1122333333333222222334689999999733          22222


Q ss_pred             c-ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc--HHHH-HH----HHHcCCcEEE
Q 029077           80 D-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQV-TF----HRKKNLQYYE  151 (199)
Q Consensus        80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~--~~~~-~~----~~~~~~~~~~  151 (199)
                      . .+++.+|++++|+|++++.+++.. .|...+..  .++|+++|+||+|+.+....  .+.. .+    ....++++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  327 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            2 367889999999999998777664 46555544  48999999999999764321  1111 22    2234678999


Q ss_pred             eccCCCCChHHHHHHHHHHHhC
Q 029077          152 ISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      +||++|.|++++|..+.+.+..
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999988764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.88  E-value=5e-22  Score=149.24  Aligned_cols=162  Identities=17%  Similarity=0.126  Sum_probs=110.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc---------cccccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRDG   81 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~   81 (199)
                      .+..+|+++|++|||||||+|+|++.... ...+..+++.......+......+.+|||||..         .+......
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~-i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKIS-ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEE-ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            34568999999999999999998865432 111122222222222233345789999999986         23444566


Q ss_pred             cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHH-HHHHHHHcCC-cEEEeccCCCC
Q 029077           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNL-QYYEISAKSNY  158 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~-~~~~~~~~~~-~~~~~s~~~~~  158 (199)
                      ++..+|++++|+|+++   +.....|+..... ..+.|+++++||+|+.. .....+ ...+....++ .++++||++|.
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~  160 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL  160 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence            7889999999999976   3333334332222 24799999999999986 222222 2345555665 69999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCC
Q 029077          159 NFEKPFLYLARKLAGDPNL  177 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~~~~~  177 (199)
                      |++++++.+.+.+.+.+..
T Consensus       161 ~v~~l~~~i~~~l~~~~~~  179 (301)
T 1ega_A          161 NVDTIAAIVRKHLPEATHH  179 (301)
T ss_dssp             THHHHHHHHHTTCCBCCCS
T ss_pred             CHHHHHHHHHHhCCcCCCC
Confidence            9999999999988766654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=1.8e-22  Score=158.99  Aligned_cols=152  Identities=17%  Similarity=0.207  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc---------cccccccccC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYIH   85 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---------~~~~~~~~~~   85 (199)
                      +|+++|.+|||||||+|+|..... .....+.|++...........+..+.+|||+|.+..         ......+++.
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~   81 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   81 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence            799999999999999999886553 223445565544443333323456899999997642         2334556899


Q ss_pred             CcEEEEEEeCCChhhHhc--HHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH-HHHHHHcCC-cEEEeccCCCCChH
Q 029077           86 GQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNFE  161 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~~~~v~  161 (199)
                      +|++++|+|++++.+...  +..|+.   .  .++|+++|+||+|+.+.. ..+. .+++ ..++ .++++||++|.|+.
T Consensus        82 ad~il~V~D~~~~~~~~d~~i~~~l~---~--~~~p~ilv~NK~D~~~~~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~  154 (439)
T 1mky_A           82 ADLVLFVVDGKRGITKEDESLADFLR---K--STVDTILVANKAENLREF-EREVKPELY-SLGFGEPIPVSAEHNINLD  154 (439)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHHHHH---H--HTCCEEEEEESCCSHHHH-HHHTHHHHG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHH---H--cCCCEEEEEeCCCCcccc-HHHHHHHHH-hcCCCCEEEEeccCCCCHH
Confidence            999999999987644322  223332   2  279999999999986431 1222 3343 4565 68999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 029077          162 KPFLYLARKLAGD  174 (199)
Q Consensus       162 ~~~~~i~~~~~~~  174 (199)
                      ++++++.+.+.+.
T Consensus       155 ~L~~~i~~~l~~~  167 (439)
T 1mky_A          155 TMLETIIKKLEEK  167 (439)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcccc
Confidence            9999999988643

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=3.5e-22  Score=161.53  Aligned_cols=160  Identities=14%  Similarity=0.147  Sum_probs=112.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCC--CC-----Cc------cccceeEEEeeEEEEe-----cCcEEEEEEEeCCCcc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FE-----KK------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE   73 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~--~~-----~~------~~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~   73 (199)
                      +..+|+++|+.++|||||+++|+...  ..     ..      ...+.|.+.......+     ++..+.+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            45799999999999999999987521  11     00      1123444443332222     4557899999999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC---cEE
Q 029077           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY  150 (199)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~---~~~  150 (199)
                      .|...+..++..+|++|+|+|++++.+.+....|.....   .++|+++|+||+|+.+........++....++   .++
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi  159 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAV  159 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCE
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEE
Confidence            998888888999999999999999877777777765543   37899999999999875433333455555565   489


Q ss_pred             EeccCCCCChHHHHHHHHHHHhCC
Q 029077          151 EISAKSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       151 ~~s~~~~~~v~~~~~~i~~~~~~~  174 (199)
                      ++||++|.|+++++++|.+.+...
T Consensus       160 ~vSAktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          160 RCSAKTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             EECTTTCTTHHHHHHHHHHHSCCC
T ss_pred             EeecccCCCchhHHHHHhhcCCCc
Confidence            999999999999999999987643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.88  E-value=2.6e-22  Score=148.00  Aligned_cols=171  Identities=10%  Similarity=0.048  Sum_probs=105.1

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCC-CCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc-------
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------   79 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-------   79 (199)
                      .+....++|+|+|.+|||||||+++|+... +.....++ +++..............+.+|||||...+....       
T Consensus        17 ~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i   95 (260)
T 2xtp_A           17 CASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEV   95 (260)
T ss_dssp             ----CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHH
Confidence            345678999999999999999999988655 33322222 012211211222234679999999976653322       


Q ss_pred             ----cccccCCcEEEEEEeCCChhhH-hcHHHHHHHHHhhcCCCcEEEEEe-CCCCCCccccH--------HHHHHHHHc
Q 029077           80 ----DGYYIHGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGN-KVDVKNRQVKA--------KQVTFHRKK  145 (199)
Q Consensus        80 ----~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~l~~~~~~~p~iiv~~-K~D~~~~~~~~--------~~~~~~~~~  145 (199)
                          ..+++.+|++++|+|+++.... ..+..++..+.......|.++++| |+|+.......        +...+....
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~  175 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAAC  175 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred             HHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHh
Confidence                2256889999999999862211 122233333322212456666666 99997543221        122244444


Q ss_pred             CCcE-----EEeccCCCCChHHHHHHHHHHHhCCCCCce
Q 029077          146 NLQY-----YEISAKSNYNFEKPFLYLARKLAGDPNLHF  179 (199)
Q Consensus       146 ~~~~-----~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~  179 (199)
                      +..+     +++||++|.|++++|..|.+.+..++...+
T Consensus       176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~  214 (260)
T 2xtp_A          176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGDHY  214 (260)
T ss_dssp             TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCeEEEecCcccccccHHHHHHHHHHHHHHHHhCCCCcC
Confidence            4322     789999999999999999999987774444

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=4e-23  Score=162.66  Aligned_cols=155  Identities=19%  Similarity=0.162  Sum_probs=100.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc--------ccccccccccc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYI   84 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~   84 (199)
                      ..+|+++|.+|||||||+|+|..... ....++.|++...........+..+.+|||+|..        .+......+++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            47999999999999999999776544 3455677877776666666666789999999985        34555566788


Q ss_pred             CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC-cEEEeccCCCCChHHH
Q 029077           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP  163 (199)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~v~~~  163 (199)
                      .+|++++|+|++++.+...  .++..+.. ..++|+++|+||+|+.+....  ..++. ..++ .++++||.+|.|+.++
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~-~~~~pvilv~NK~D~~~~~~~--~~~~~-~lg~~~~~~iSA~~g~gv~~L  155 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY-RTKKPVVLAVNKLDNTEMRAN--IYDFY-SLGFGEPYPISGTHGLGLGDL  155 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT-TCCSCEEEEEECCCC-----C--CCSSG-GGSSCCCEECBTTTTBTHHHH
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH-HcCCCEEEEEECccCccchhh--HHHHH-HcCCCCeEEEeCcCCCChHHH
Confidence            9999999999988755432  23333222 247899999999998753211  11222 2344 6899999999999999


Q ss_pred             HHHHHHHHhCC
Q 029077          164 FLYLARKLAGD  174 (199)
Q Consensus       164 ~~~i~~~~~~~  174 (199)
                      ++++.+.+.+.
T Consensus       156 ~~~i~~~l~~~  166 (436)
T 2hjg_A          156 LDAVAEHFKNI  166 (436)
T ss_dssp             HHHHHHTGGGC
T ss_pred             HHHHHHhcCcc
Confidence            99999988653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=2.5e-22  Score=158.99  Aligned_cols=161  Identities=16%  Similarity=0.142  Sum_probs=107.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC----------cccccccc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR   79 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~~~   79 (199)
                      ....++|+++|.+|+|||||+++|+.... ....+..|++.......+......+.+|||||          ++.+....
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            45679999999999999999999875432 12223334444332222222334889999999          45554443


Q ss_pred             c-ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc-c-HHHHHHHHHc-----CCcEEE
Q 029077           80 D-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKK-----NLQYYE  151 (199)
Q Consensus        80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-~-~~~~~~~~~~-----~~~~~~  151 (199)
                      . .+++.+|++++|+|+++....+ ...|...+..  .++|+++|+||+|+.+... . .+..+.++..     .+++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  347 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            3 3678899999999998754322 2334444444  4799999999999976332 2 2223333332     578999


Q ss_pred             eccCCCCChHHHHHHHHHHHhCC
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~  174 (199)
                      +||++|.|++++|..+.+.+...
T Consensus       348 ~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          348 MSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHHHh
Confidence            99999999999999999887543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=7.2e-22  Score=143.91  Aligned_cols=172  Identities=9%  Similarity=0.006  Sum_probs=105.2

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc-----------c
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-----------F   75 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~   75 (199)
                      +......+||+|+|.+|||||||+|+|++........++.+++..............+.+|||||...           +
T Consensus        23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence            44556789999999999999999999887666544434333333333333333446889999999432           2


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhh---cCCCcEEEEEeCCCCCCcccc--------HHHHHHHHH
Q 029077           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRK  144 (199)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~---~~~~p~iiv~~K~D~~~~~~~--------~~~~~~~~~  144 (199)
                      ......++..+|++|+|+|+++....  ...|+..+...   ....|+++|+||+|+.+....        .....+.+.
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            23333445678999999998753321  12233333221   124699999999998643221        234567777


Q ss_pred             cCCcEEEeccCCC-----CChHHHHHHHHHHHhCCCCCcee
Q 029077          145 KNLQYYEISAKSN-----YNFEKPFLYLARKLAGDPNLHFV  180 (199)
Q Consensus       145 ~~~~~~~~s~~~~-----~~v~~~~~~i~~~~~~~~~~~~~  180 (199)
                      .+..++.++...+     .++.+++..+.+.+.++....+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g~~~~  221 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKEGCYT  221 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTTSCC-
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            8888888877644     68999999999888765444333

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.87  E-value=1.1e-22  Score=161.00  Aligned_cols=151  Identities=21%  Similarity=0.203  Sum_probs=104.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEE--EeeEEEEecCcEEEEEEEeCCCcc-ccccc--------ccc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQE-KFGGL--------RDG   81 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~-~~~~~--------~~~   81 (199)
                      .++|+++|.+|||||||+|+|...... ......+++  .....+.++  ...+.+|||+|.. .+...        ...
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a-~vs~~~gTT~d~~~~~i~~~--g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~  319 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRA-IVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQ  319 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBC-CCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCC-ccCCCCCeeeeeEEEEEecC--CeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence            389999999999999999998865421 111122222  222233333  4678999999987 54322        234


Q ss_pred             cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChH
Q 029077           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      ++..+|++|+|+|++++.+++... +...    ..++|+++|+||+|+.+.....+...++ ..+.+++++||++|.|++
T Consensus       320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~~----l~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~  393 (482)
T 1xzp_A          320 EIEKADIVLFVLDASSPLDEEDRK-ILER----IKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLE  393 (482)
T ss_dssp             HHHHCSEEEEEEETTSCCCHHHHH-HHHH----HTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHH
T ss_pred             HhhcccEEEEEecCCCCCCHHHHH-HHHH----hcCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHH
Confidence            678999999999999876665432 2222    2488999999999997542212222222 244689999999999999


Q ss_pred             HHHHHHHHHHh
Q 029077          162 KPFLYLARKLA  172 (199)
Q Consensus       162 ~~~~~i~~~~~  172 (199)
                      +++.+|.+.+.
T Consensus       394 eL~~~l~~~~~  404 (482)
T 1xzp_A          394 KLEESIYRETQ  404 (482)
T ss_dssp             HHHHHHHHHTH
T ss_pred             HHHHHHHHHHh
Confidence            99999999765

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.87  E-value=1.3e-21  Score=158.08  Aligned_cols=160  Identities=17%  Similarity=0.232  Sum_probs=114.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcC--CCCC-----cc------ccceeEEEeeE--EEEe---cCcEEEEEEEeCCCcc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEK-----KY------EPTIGVEVHPL--DFFT---NCGKIRFYCWDTAGQE   73 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~--~~~~-----~~------~~~~~~~~~~~--~~~~---~~~~~~~~l~D~~g~~   73 (199)
                      +..+|+++|+.++|||||+++|+..  ....     ..      ....|.+....  ...+   ++..+.+.+|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            4579999999999999999998742  1110     01      11233333221  1211   4456899999999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC---cEE
Q 029077           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY  150 (199)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~---~~~  150 (199)
                      .|......++..+|++|+|+|++++.+.+....|.....   .+.|+++|+||+|+.+........++....++   .++
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi  161 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI  161 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence            998888888999999999999999877777777765443   38999999999999875433333455555565   489


Q ss_pred             EeccCCCCChHHHHHHHHHHHhCC
Q 029077          151 EISAKSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       151 ~~s~~~~~~v~~~~~~i~~~~~~~  174 (199)
                      ++||++|.|+++++++|.+.+...
T Consensus       162 ~vSAktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          162 LASAKEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred             EEEeecCCCchHHHHHHHHhcccc
Confidence            999999999999999999988643

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.86  E-value=3.2e-21  Score=147.14  Aligned_cols=114  Identities=13%  Similarity=0.126  Sum_probs=92.8

Q ss_pred             cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------hhhHhcHHHHHHHHHhh--cCCCcEEEEEeCC
Q 029077           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~  127 (199)
                      ..+.+.+||++|++.++..+..++++++++|+|+|+++          ..++.+...|+..+...  ..+.|+++++||.
T Consensus       191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence            46889999999999999999999999999999999998          45677777777777653  3689999999999


Q ss_pred             CCCCcc-----------------ccHHHHHHHH-----------HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          128 DVKNRQ-----------------VKAKQVTFHR-----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       128 D~~~~~-----------------~~~~~~~~~~-----------~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      |+.+..                 ...+...++.           ..++.+++|||++|.|++++|.++.+.+..
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            985321                 1233445554           356779999999999999999999998864

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.86  E-value=2.6e-21  Score=153.67  Aligned_cols=157  Identities=20%  Similarity=0.166  Sum_probs=108.1

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCC----CCC-ccccceeEEEe--eEEEEecCcEEEEEEEeCCCccccccccc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE----FEK-KYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~----~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~~~~~~~   80 (199)
                      ...++.++|+++|..++|||||+++|....    ... ......|.+..  .....+  ....+.+||+||++.+...+.
T Consensus        14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~iiDtPGh~~~~~~~~   91 (482)
T 1wb1_A           14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--ENYRITLVDAPGHADLIRAVV   91 (482)
T ss_dssp             CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE--TTEEEEECCCSSHHHHHHHHH
T ss_pred             hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE--CCEEEEEEECCChHHHHHHHH
Confidence            445778999999999999999999987554    110 11112222221  112222  347899999999999888888


Q ss_pred             ccccCCcEEEEEEeCCCh---hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cHHHHHHHHHc----CCcE
Q 029077           81 GYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKK----NLQY  149 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~~~~~~~~~~----~~~~  149 (199)
                      ..+..+|++++|+|+++.   .+.+.+    ..+..  .++|.++|+||+|+.+...    ..+..+++...    +.++
T Consensus        92 ~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           92 SAADIIDLALIVVDAKEGPKTQTGEHM----LILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHHhhCCEEEEEEecCCCccHHHHHHH----HHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            889999999999999874   333222    22222  3788899999999976322    12223444444    5789


Q ss_pred             EEeccCCCCChHHHHHHHHHHHh
Q 029077          150 YEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      +++||++|.|+++++++|.+.+.
T Consensus       166 i~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHhhc
Confidence            99999999999999999999875

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.86  E-value=8.5e-22  Score=156.84  Aligned_cols=152  Identities=20%  Similarity=0.173  Sum_probs=100.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------ccccceeEEEeeEEEEecCcE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTNCGK   61 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~~   61 (199)
                      .+.+||+++|.+++|||||+++|+...  +..                           ......|++.......+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            567999999999999999999987431  110                           011122444444444555667


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhc-----HHHHHHHHHhhcCCCcEEEEEeCCCCCCcc--c
Q 029077           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-----VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--V  134 (199)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~--~  134 (199)
                      ..+.+|||||++.|......++..+|++|+|+|++++.++..     ...+...+.......|+++|+||+|+.+..  .
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~  190 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR  190 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence            889999999999999999999999999999999998754322     122222233333346799999999997621  1


Q ss_pred             cH----HHHHHHHHc-----CCcEEEeccCCCCChHH
Q 029077          135 KA----KQVTFHRKK-----NLQYYEISAKSNYNFEK  162 (199)
Q Consensus       135 ~~----~~~~~~~~~-----~~~~~~~s~~~~~~v~~  162 (199)
                      ..    +...+....     +++++++||++|.|+.+
T Consensus       191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            11    122333333     35799999999999975

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.86  E-value=2.1e-20  Score=145.98  Aligned_cols=159  Identities=16%  Similarity=0.115  Sum_probs=101.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCC---CCCcccc--ceeEEEeeEEEEe-------------c--C----cEEEEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFY   65 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   65 (199)
                      ..+.++|+++|+.++|||||+++|....   +..+..+  |....+.......             .  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            3467999999999999999999976322   2222222  3333333222211             1  1    137899


Q ss_pred             EEeCCCcccccccccccccCCcEEEEEEeCCCh----hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cHH
Q 029077           66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAK  137 (199)
Q Consensus        66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~~  137 (199)
                      +||+||++.|...+...+..+|++|+|+|++++    .+.+.+..    + ......|+++++||+|+.+...    ..+
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~-~~l~~~~iivv~NK~Dl~~~~~~~~~~~~  159 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----L-EILGIDKIIIVQNKIDLVDEKQAEENYEQ  159 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----H-HHTTCCCEEEEEECTTSSCTTTTTTHHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----H-HHcCCCeEEEEEEccCCCCHHHHHHHHHH
Confidence            999999999887777778899999999999964    33332222    2 2223458999999999976432    122


Q ss_pred             HHHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       138 ~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      ..++++.   .+++++++||++|.|+++++++|.+.+..
T Consensus       160 i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          160 IKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             HHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            3344443   35789999999999999999999987653

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=7.1e-21  Score=149.71  Aligned_cols=156  Identities=17%  Similarity=0.168  Sum_probs=105.6

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------ccccceeEEEeeEEEEec
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTN   58 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~   58 (199)
                      ......++|+++|..++|||||+++|+...  ...                           ......|.+.......+.
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            445778999999999999999999985321  110                           011123444444444455


Q ss_pred             CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhh---Hh---cHHHHHHHHHhhcCCCc-EEEEEeCCCCCC
Q 029077           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKN  131 (199)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~  131 (199)
                      .....+.+|||||++.|...+...+..+|++++|+|++++..   |.   ........+..  .++| +++++||+|+..
T Consensus        92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT  169 (439)
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence            566799999999999998888888999999999999998642   21   11111111211  2566 899999999854


Q ss_pred             cc--------ccHHHHHHHHHcC------CcEEEeccCCCCChHHHHH
Q 029077          132 RQ--------VKAKQVTFHRKKN------LQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus       132 ~~--------~~~~~~~~~~~~~------~~~~~~s~~~~~~v~~~~~  165 (199)
                      ..        ...+...+++..+      ++++++||++|.|+.++.+
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            21        1112234444444      4699999999999998654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.86  E-value=5.7e-23  Score=163.97  Aligned_cols=157  Identities=17%  Similarity=0.150  Sum_probs=108.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      +..+|+++|++++|||||+++|....+.....++.+.+......... ....+.+|||||++.|...+..++..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            46789999999999999999987654433322222222222222221 23478999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc---cHHHHHH---HHHc--CCcEEEeccCCCCChHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTF---HRKK--NLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~---~~~~~~~---~~~~--~~~~~~~s~~~~~~v~~~  163 (199)
                      |+|++++...+....| ..+..  .++|+++++||+|+.+...   ..+....   +..+  .++++++||++|.|++++
T Consensus        82 VVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL  158 (537)
T 3izy_P           82 VVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL  158 (537)
T ss_dssp             ECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred             EEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence            9999986554433332 22222  3789999999999975322   1111111   1111  247999999999999999


Q ss_pred             HHHHHHHHh
Q 029077          164 FLYLARKLA  172 (199)
Q Consensus       164 ~~~i~~~~~  172 (199)
                      +++|...+.
T Consensus       159 le~I~~l~~  167 (537)
T 3izy_P          159 AEATIALAE  167 (537)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhhh
Confidence            999998764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.2e-21  Score=137.97  Aligned_cols=117  Identities=18%  Similarity=0.195  Sum_probs=88.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCc---cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccC-
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH-   85 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~-   85 (199)
                      ....++|+++|++|||||||+++|....+...   ..++.+         .+.....+.+||+||...+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            35678999999999999999999887765431   111211         11145678999999999888777777665 


Q ss_pred             ---CcEEEEEEeCC-ChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCcccc
Q 029077           86 ---GQCAIIMFDVT-ARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK  135 (199)
Q Consensus        86 ---~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~~~~  135 (199)
                         +|++++|+|++ +..++..+..|+..+....     .+.|+++|+||+|+.+....
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  174 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP  174 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence               89999999999 8889988888887765532     48999999999999765443

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=2.8e-21  Score=154.67  Aligned_cols=119  Identities=18%  Similarity=0.164  Sum_probs=85.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCC-----------------CCCcc---ccceeEEEeeEEEEecCcEEEEEEEeCC
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGE-----------------FEKKY---EPTIGVEVHPLDFFTNCGKIRFYCWDTA   70 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~-----------------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~   70 (199)
                      .+..+|+|+|.+|+|||||+++|+...                 .....   ....|.+.......+....+.+.+||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            356799999999999999999986110                 00000   0013333333344444457889999999


Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (199)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~  132 (199)
                      |+..+......+++.+|++|+|+|++++...+....|.. +..  .++|+++|+||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~--~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRL--RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHT--TTCCEEEEEECTTSCCS
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH--cCCCEEEEEeCCCCccc
Confidence            999999988889999999999999998766665554432 222  37899999999999653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.85  E-value=3.3e-22  Score=157.63  Aligned_cols=155  Identities=15%  Similarity=0.148  Sum_probs=97.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc--------ccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGY   82 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~   82 (199)
                      ..++|+++|++|||||||+|+|+..... ....+....+........+  ...+.+|||+|...+....        ..+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~--g~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG--GIPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET--TEEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC--CEEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            3578999999999999999998764321 1111222122222233333  4678999999976544332        335


Q ss_pred             ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      +..+|++++|+|++++.+... ..|+..+    .+.|+++|+||+|+...........+.  ...+++++||++|.|+++
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~e  373 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGIDS  373 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHHH
T ss_pred             hhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHHH
Confidence            788999999999998655433 3333333    357999999999997643322111111  356899999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 029077          163 PFLYLARKLAGDP  175 (199)
Q Consensus       163 ~~~~i~~~~~~~~  175 (199)
                      ++++|.+.+....
T Consensus       374 L~~~i~~~~~~~~  386 (462)
T 3geh_A          374 LETAILEIVQTGK  386 (462)
T ss_dssp             HHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhccC
Confidence            9999999886543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.85  E-value=6.6e-22  Score=156.53  Aligned_cols=160  Identities=18%  Similarity=0.129  Sum_probs=101.7

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCC--------cccccccc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG--------QEKFGGLR   79 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~   79 (199)
                      ...|...+|+++|.+|||||||+|+|...... ....+.|++..............+.+|||+|        ++.+....
T Consensus        18 ~~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~   96 (456)
T 4dcu_A           18 GSHMGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQA   96 (456)
T ss_dssp             -----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHH
T ss_pred             hhhcCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHH
Confidence            34467789999999999999999998765442 4455778887777777777777899999999        55556666


Q ss_pred             cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCC
Q 029077           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN  159 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      ..+++.+|++|+|+|..++..  ....|+..+... .++|+++|+||+|+.+....  ..++....-...+++||.+|.|
T Consensus        97 ~~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~~~--~~e~~~lg~~~~~~iSA~~g~g  171 (456)
T 4dcu_A           97 EIAMDEADVIIFMVNGREGVT--AADEEVAKILYR-TKKPVVLAVNKLDNTEMRAN--IYDFYSLGFGEPYPISGTHGLG  171 (456)
T ss_dssp             HHHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT-CCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTT
T ss_pred             HhhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH-cCCCEEEEEECccchhhhhh--HHHHHHcCCCceEEeecccccc
Confidence            777889999999999876432  223333333222 48999999999998653211  1111111112568999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 029077          160 FEKPFLYLARKLAG  173 (199)
Q Consensus       160 v~~~~~~i~~~~~~  173 (199)
                      +.++++.+.+.+..
T Consensus       172 v~~L~~~i~~~l~~  185 (456)
T 4dcu_A          172 LGDLLDAVAEHFKN  185 (456)
T ss_dssp             HHHHHHHHHTTGGG
T ss_pred             hHHHHHHHHhhccc
Confidence            99999999887754

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.85  E-value=6.6e-21  Score=143.52  Aligned_cols=116  Identities=13%  Similarity=0.086  Sum_probs=90.0

Q ss_pred             cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCC
Q 029077           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~  127 (199)
                      +.+.+.+||++|++.++..+..++++++++|+|+|++          +..++.+...|+..+...  ..+.|+++++||.
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence            4689999999999999999999999999999999765          445566666666666543  2689999999999


Q ss_pred             CCCCcc------------------ccHHHHHH----------HHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077          128 DVKNRQ------------------VKAKQVTF----------HRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       128 D~~~~~------------------~~~~~~~~----------~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~  175 (199)
                      |+.+..                  ...+...+          +...++.+++|||+++.|++++|..+.+.+..+.
T Consensus       245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence            985422                  12233334          2345567899999999999999999999887543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.85  E-value=6.7e-21  Score=150.11  Aligned_cols=158  Identities=20%  Similarity=0.200  Sum_probs=101.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEee--EEEEecCcEEEEEEEeCCCcccccccc---------
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGLR---------   79 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~---------   79 (199)
                      ...++|+++|++|||||||+|+|++... ....+..|++...  ..+.+++  ..+.+|||+|........         
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~  254 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYSN  254 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSCC
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcc-cccCCCCCCcCCceEEEEEECC--EEEEEEECCCCccccccchhhHHHHHH
Confidence            4568999999999999999999775443 1222333433332  3334444  367899999975432211         


Q ss_pred             ---cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-ccHHHH--HH----HHHcCCcE
Q 029077           80 ---DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQV--TF----HRKKNLQY  149 (199)
Q Consensus        80 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~~~~~~--~~----~~~~~~~~  149 (199)
                         ..+++.+|++++++|++++.+.+.. .+...+..  .++|+++|+||+|+.+.. ...+..  .+    ......++
T Consensus       255 ~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (439)
T 1mky_A          255 YRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL  331 (439)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence               2346779999999999876554432 22222222  479999999999987532 212111  22    22345789


Q ss_pred             EEeccCCCCChHHHHHHHHHHHhCC
Q 029077          150 YEISAKSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~i~~~~~~~  174 (199)
                      +++||++|.|++++|..+.+.+...
T Consensus       332 ~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          332 IFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999999877543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=3.9e-21  Score=149.59  Aligned_cols=159  Identities=13%  Similarity=0.046  Sum_probs=111.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcC-------CCCCc-------cccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTG-------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG   77 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (199)
                      +.+||+++|+.++|||||+++|...       .+...       .....|.+.......+......+.+|||||++.|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            5689999999999999999998753       11100       011334444444444555667899999999999888


Q ss_pred             cccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCcc-c----cHHHHHHHHHcC-----
Q 029077           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ-V----KAKQVTFHRKKN-----  146 (199)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~-~----~~~~~~~~~~~~-----  146 (199)
                      .+..++..+|++|+|+|+++....+....| ..+..  .++| +++++||+|+.+.. .    ..+..++++..+     
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence            888889999999999999986443333333 33322  3778 68999999997521 1    123335555555     


Q ss_pred             CcEEEeccCCCCC----------hHHHHHHHHHHHhC
Q 029077          147 LQYYEISAKSNYN----------FEKPFLYLARKLAG  173 (199)
Q Consensus       147 ~~~~~~s~~~~~~----------v~~~~~~i~~~~~~  173 (199)
                      ++++++||++|.|          +.++++.|.+.+..
T Consensus       159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence            5899999998764          88889888887653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.85  E-value=3.9e-20  Score=144.63  Aligned_cols=160  Identities=16%  Similarity=0.114  Sum_probs=109.0

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcC---CCCCcccc--ceeEEEeeEEEEe-------------c--C----cEEEE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRF   64 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~   64 (199)
                      ...+.++|+++|+.++|||||+++|...   .+..+..+  |....+.......             .  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            3466799999999999999999997732   22223223  3333333222211             0  1    13789


Q ss_pred             EEEeCCCcccccccccccccCCcEEEEEEeCCCh----hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cH
Q 029077           65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KA  136 (199)
Q Consensus        65 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~  136 (199)
                      .+||+||++.|...+...+..+|++|+|+|+++.    .+.+.+..    +. .....|+++++||+|+.+...    ..
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~-~~~~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQ-IIGQKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HH-HHTCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HH-HcCCCcEEEEEECccCCCHHHHHHHHH
Confidence            9999999998877777778899999999999964    23332222    21 123468999999999986432    12


Q ss_pred             HHHHHHHH---cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          137 KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       137 ~~~~~~~~---~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      +...+++.   .+.+++++||++|.|+++++++|.+.+..
T Consensus       161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence            22344433   35789999999999999999999987753

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.85  E-value=6.3e-22  Score=155.69  Aligned_cols=155  Identities=19%  Similarity=0.204  Sum_probs=102.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcC--CCCCcc---------------------------ccceeEEEeeEEEEecCc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------EPTIGVEVHPLDFFTNCG   60 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~   60 (199)
                      ..+.++|+++|+.++|||||+++|+..  .+....                           ....|.+.......+...
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~   82 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK   82 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence            356799999999999999999998753  222110                           001233333333344556


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHh------hcCCCcEEEEEeCCCCCCcc-
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR------VCENIPIVLCGNKVDVKNRQ-  133 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~------~~~~~p~iiv~~K~D~~~~~-  133 (199)
                      ...+.+|||||++.|...+..++..+|++|+|+|+++ .+|+....|.....+      .....|+++++||+|+.+.. 
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence            6789999999999998888889999999999999998 556544333222221      11234689999999997621 


Q ss_pred             -------ccHHHHHHHHHcC-----CcEEEeccCCCCChHHHHH
Q 029077          134 -------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus       134 -------~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~~~  165 (199)
                             ...+...+++..+     ++++++||++|.|+.+++.
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                   1223345555555     6799999999999976543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.85  E-value=3.1e-21  Score=143.22  Aligned_cols=158  Identities=16%  Similarity=0.214  Sum_probs=90.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCC-CCcc-------ccceeEEEeeEEEEecCcEEEEEEEeCCCcccc-------
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKY-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------   75 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------   75 (199)
                      ...++|+++|.+|+|||||+|+|+.... ...+       .+|.+.+........++..+.+.+|||||....       
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            4579999999999999999999765433 2333       455555665555555556679999999997322       


Q ss_pred             cccc-------cccc-------------cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc
Q 029077           76 GGLR-------DGYY-------------IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  135 (199)
Q Consensus        76 ~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~  135 (199)
                      ....       ..++             ..+|+++++++.+.......-..++..+..   ++|+++|+||+|+......
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~  162 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC  162 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence            1111       1111             236788888876642211111233444433   8999999999998653222


Q ss_pred             H----HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077          136 A----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       136 ~----~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      .    .........++.++.+|+.++.|+.+++.+|.+.+
T Consensus       163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            1    22345556788999999999999999999988765

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.84  E-value=3.8e-20  Score=142.03  Aligned_cols=157  Identities=17%  Similarity=0.070  Sum_probs=102.9

Q ss_pred             eE-EEEEcCCCCCHHHHHHHHhcCCCCCc--cccceeEEEeeEEEEecCcEEEEEEEeCCCccc---------ccccccc
Q 029077           14 FK-LVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDG   81 (199)
Q Consensus        14 ~~-i~viG~~~~GKStli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~   81 (199)
                      ++ |+++|++|||||||+|+|........  ...|.  +.....+.+++  ..+.+|||+|.-.         +... ..
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~--d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~  253 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTM--SPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LS  253 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------C--CSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCccccc--CCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HH
Confidence            44 99999999999999999876554211  11222  12223344444  5689999999622         2122 22


Q ss_pred             cccCCcEEEEEEeCCChh--hHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccH---HHHHHHHHc---CCcEEEe
Q 029077           82 YYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYEI  152 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~---~~~~~~~~~---~~~~~~~  152 (199)
                      .+..+|++++|+|++++.  .......|...+.... .+.|+++|+||+|+.+.....   ....++...   +.+++++
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  333 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI  333 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            467899999999998876  4555555655555432 578999999999997643211   111223333   2368999


Q ss_pred             ccCCCCChHHHHHHHHHHHhCCC
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~  175 (199)
                      ||++|.|++++++.|.+.+....
T Consensus       334 SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          334 SALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             ECCCCcCHHHHHHHHHHHhcccC
Confidence            99999999999999998776433

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.1e-20  Score=153.73  Aligned_cols=154  Identities=20%  Similarity=0.183  Sum_probs=103.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------------------------ccceeEEEeeEEEEecCc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------------------------EPTIGVEVHPLDFFTNCG   60 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   60 (199)
                      ..+.+||+++|.+++|||||+++|+.....-..                             ....|++.......+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            466899999999999999999998754221000                             001244433333444456


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hH--hcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-c
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V  134 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~  134 (199)
                      ...+.+|||||++.+......++..+|++|+|+|++++.   ++  .........+.......|+++|+||+|+.+.. .
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~  323 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ  323 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence            678999999999999888888999999999999999753   11  11122222222222334599999999997621 1


Q ss_pred             -----cHHHHHHHHHc-----CCcEEEeccCCCCChHHH
Q 029077          135 -----KAKQVTFHRKK-----NLQYYEISAKSNYNFEKP  163 (199)
Q Consensus       135 -----~~~~~~~~~~~-----~~~~~~~s~~~~~~v~~~  163 (199)
                           ..+...+....     .++++++||++|.|+.++
T Consensus       324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence                 11222334333     357999999999999875

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.84  E-value=4.7e-21  Score=149.59  Aligned_cols=162  Identities=15%  Similarity=0.093  Sum_probs=112.4

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcC--------CCCCc-------cccceeEEEeeEEEEecCcEEEEEEEeCCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTG--------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~   72 (199)
                      ......++|+++|+.++|||||+++|...        .+...       ...+.|.+.......+......+.+|||||+
T Consensus         6 ~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~   85 (405)
T 2c78_A            6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH   85 (405)
T ss_dssp             ---CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred             cCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence            34567899999999999999999998752        11110       0113444444444455556678999999999


Q ss_pred             ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCc-cc----cHHHHHHHHHcC
Q 029077           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-QV----KAKQVTFHRKKN  146 (199)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~-~~----~~~~~~~~~~~~  146 (199)
                      +.|......++..+|++|+|+|++++...+ ...++..+...  ++| +++++||+|+.+. ..    ..+...++...+
T Consensus        86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~  162 (405)
T 2c78_A           86 ADYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE  162 (405)
T ss_dssp             GGGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence            998888888889999999999998865333 33444444333  778 8899999999742 11    112334555554


Q ss_pred             -----CcEEEeccCCCCC------------------hHHHHHHHHHHHh
Q 029077          147 -----LQYYEISAKSNYN------------------FEKPFLYLARKLA  172 (199)
Q Consensus       147 -----~~~~~~s~~~~~~------------------v~~~~~~i~~~~~  172 (199)
                           .+++++||++|.|                  +.++++.|.+.+.
T Consensus       163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence                 6799999999977                  6777777776654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.84  E-value=6.3e-21  Score=145.50  Aligned_cols=114  Identities=15%  Similarity=0.160  Sum_probs=89.0

Q ss_pred             cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCC
Q 029077           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~  127 (199)
                      ..+.+.+||++|++.++..+..++++++++|+|||++          +..++.+...|+..+...  .++.|+++|+||.
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          677888888888877654  3689999999999


Q ss_pred             CCCCccc-----------------------cHHHHHHHHH----------------cCCcEEEeccCCCCChHHHHHHHH
Q 029077          128 DVKNRQV-----------------------KAKQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus       128 D~~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      |+.+...                       ..+...++..                ..+.+++|||+++.|++++|.++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9853211                       1222333221                223468999999999999999999


Q ss_pred             HHHhC
Q 029077          169 RKLAG  173 (199)
Q Consensus       169 ~~~~~  173 (199)
                      +.+..
T Consensus       341 ~~I~~  345 (354)
T 2xtz_A          341 ETLRR  345 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88753

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.84  E-value=4.1e-20  Score=141.53  Aligned_cols=114  Identities=14%  Similarity=0.097  Sum_probs=84.9

Q ss_pred             cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------hhhHhcHHHHHHHHHhh--cCCCcEEEEEeCC
Q 029077           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~  127 (199)
                      ..+.+.+||++|++.++..+..++++++++|+|+|+++          ..++.+...|+..+...  ..+.|+|+++||.
T Consensus       199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~  278 (362)
T 1zcb_A          199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT  278 (362)
T ss_dssp             TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence            35789999999999999999999999999999999998          67888888888877654  3689999999999


Q ss_pred             CCCCcc-----------------cc-HHHHHHH--------H---HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          128 DVKNRQ-----------------VK-AKQVTFH--------R---KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       128 D~~~~~-----------------~~-~~~~~~~--------~---~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      |+.+..                 .. .+...++        +   ..++.+++|||+++.|++++|.++.+.+..
T Consensus       279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            985321                 22 2333333        1   345778999999999999999999988763

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.83  E-value=4.8e-20  Score=149.21  Aligned_cols=156  Identities=21%  Similarity=0.201  Sum_probs=105.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeEEEeeEEE------------EecCcEEEEEEEeCCCccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTIGVEVHPLDF------------FTNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~~~------------~~~~~~~~~~l~D~~g~~~   74 (199)
                      ++..+|+++|+.++|||||+++|+......    ....+.|........            ..+.....+.+|||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            456899999999999999999987543321    122233333222110            0011123689999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCC---hhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--------------cH-
Q 029077           75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KA-  136 (199)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--------------~~-  136 (199)
                      |...+..++..+|++|+|+|+++   +.++..+..    +..  .++|+++++||+|+.....              .. 
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            99998888999999999999998   555443322    222  4899999999999864211              00 


Q ss_pred             ----------HHHHHHHHc---------------CCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          137 ----------KQVTFHRKK---------------NLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       137 ----------~~~~~~~~~---------------~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                                +........               ..+++++||++|.|+++++++|...+.
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                      011111122               237999999999999999999998765

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.83  E-value=4.9e-21  Score=147.11  Aligned_cols=161  Identities=17%  Similarity=0.289  Sum_probs=86.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCC-CCCcc--------ccceeEEEeeEEEEecCcEEEEEEEeCCCc-------cc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EK   74 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~   74 (199)
                      ...++|+|+|++|+|||||+++|+... +...+        .++.+...........+..+.+.+|||+|.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            456899999999999999999966432 22222        134444444444444555678999999998       55


Q ss_pred             cccccc-------ccccCCcE-----------EEEEEeCCC-hhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCccc
Q 029077           75 FGGLRD-------GYYIHGQC-----------AIIMFDVTA-RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (199)
Q Consensus        75 ~~~~~~-------~~~~~~d~-----------~i~v~d~~~-~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~~  134 (199)
                      +.....       .++..+++           .+++|++++ ..++..+. .|+..+   ..++|+|+|+||+|+.....
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e  191 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE  191 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH
Confidence            555554       44433322           234555444 34454444 343333   35799999999999976332


Q ss_pred             c----HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077          135 K----AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       135 ~----~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~  175 (199)
                      .    .+...++...+++++++||++|.+ .+.|..+.+.+.+..
T Consensus       192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence            2    233456667789999999999998 888888888776543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.83  E-value=3.6e-20  Score=142.51  Aligned_cols=143  Identities=7%  Similarity=-0.032  Sum_probs=103.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (199)
                      +|+++|..++|||||+++|+          ..|.+.......+......+.+|||||+++|.......++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999976          23333333333444456679999999999988777778899999999999


Q ss_pred             CCChhhHhcHHHHHHHHHhhcCCCcE-EEEEe-CCCCCCccccH----HHHHHHHHc---CCcEEE--eccCC---CCCh
Q 029077           95 VTARLTYKNVPTWHRDLCRVCENIPI-VLCGN-KVDVKNRQVKA----KQVTFHRKK---NLQYYE--ISAKS---NYNF  160 (199)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~~~~p~-iiv~~-K~D~~~~~~~~----~~~~~~~~~---~~~~~~--~s~~~---~~~v  160 (199)
                       ++. .+.....+...+...  +.|. ++++| |+|+ +.....    +..++++..   .+++++  +||++   |.|+
T Consensus        93 -~~g-~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi  167 (370)
T 2elf_A           93 -PQG-LDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV  167 (370)
T ss_dssp             -TTC-CCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred             -CCC-CcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence             543 233344444444333  6777 88888 9999 532211    222334333   368999  99999   9999


Q ss_pred             HHHHHHHHHHHh
Q 029077          161 EKPFLYLARKLA  172 (199)
Q Consensus       161 ~~~~~~i~~~~~  172 (199)
                      +++++.|.+.+.
T Consensus       168 ~~L~~~l~~~~~  179 (370)
T 2elf_A          168 DELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc
Confidence            999999988765

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.82  E-value=6e-20  Score=144.46  Aligned_cols=151  Identities=19%  Similarity=0.199  Sum_probs=100.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCC--CCc----------cccc-------------------eeEEEeeEEEEecC
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK----------YEPT-------------------IGVEVHPLDFFTNC   59 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~--~~~----------~~~~-------------------~~~~~~~~~~~~~~   59 (199)
                      ...+||+++|..++|||||+++|+....  ...          ...+                   .|.+.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4568999999999999999999875431  000          0011                   12222222223344


Q ss_pred             cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc------
Q 029077           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ------  133 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~------  133 (199)
                      ....+.+|||||++.|...+..++..+|++|+|+|++++...+ ...++..+... ...|+++|+||+|+.+..      
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~  179 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL-GIKHIVVAINKMDLNGFDERVFES  179 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-TCCEEEEEEECTTTTTSCHHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-CCCeEEEEEEcCcCCcccHHHHHH
Confidence            5678999999999998888888899999999999999864322 22333333222 233689999999997621      


Q ss_pred             ccHHHHHHHHHcC-----CcEEEeccCCCCChHHH
Q 029077          134 VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP  163 (199)
Q Consensus       134 ~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~  163 (199)
                      ...+...+++..+     .+++++||++|.|+.++
T Consensus       180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            1122335566666     67999999999999874

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.82  E-value=2.1e-20  Score=141.24  Aligned_cols=115  Identities=13%  Similarity=0.184  Sum_probs=90.2

Q ss_pred             CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCC----------ChhhHhcHHHHHHHHHhh--cCCCcEEEEEeC
Q 029077           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNK  126 (199)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K  126 (199)
                      .+.+.+.+||++|++.++..+..++++++++|+|+|++          +..++.+...|+..+...  ..++|+++++||
T Consensus       158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK  237 (340)
T 4fid_A          158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNK  237 (340)
T ss_dssp             SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEEC
T ss_pred             eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEEC
Confidence            35688999999999999999999999999999999998          567777777777776653  368999999999


Q ss_pred             CCCCCccc-----------------cHHHHHHHH----------------H-----------cCCcEEEeccCCCCChHH
Q 029077          127 VDVKNRQV-----------------KAKQVTFHR----------------K-----------KNLQYYEISAKSNYNFEK  162 (199)
Q Consensus       127 ~D~~~~~~-----------------~~~~~~~~~----------------~-----------~~~~~~~~s~~~~~~v~~  162 (199)
                      .|+.+...                 ..+...+..                .           ..+.+++|||+++.+++.
T Consensus       238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~  317 (340)
T 4fid_A          238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR  317 (340)
T ss_dssp             HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred             chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence            99854211                 112222111                1           246789999999999999


Q ss_pred             HHHHHHHHHhC
Q 029077          163 PFLYLARKLAG  173 (199)
Q Consensus       163 ~~~~i~~~~~~  173 (199)
                      +|..+.+.+..
T Consensus       318 vF~~v~~~Il~  328 (340)
T 4fid_A          318 VFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.82  E-value=7.9e-20  Score=130.37  Aligned_cols=156  Identities=14%  Similarity=0.056  Sum_probs=96.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc----------cccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRD   80 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~   80 (199)
                      ....+|+++|++|||||||++++.+..+...+.++.|.+........++   .+.+||++|...          ++....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            4567999999999999999999765554444556667655433333332   577999999742          122222


Q ss_pred             ccc---cCCcEEEEEEeCCChhhHhc--HHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cHHHHHHHHHcC--CcE
Q 029077           81 GYY---IHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKN--LQY  149 (199)
Q Consensus        81 ~~~---~~~d~~i~v~d~~~~~s~~~--~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~~~~~~~~~~~--~~~  149 (199)
                      .++   ..++++++++|+++..+...  +..|+.   .  .+.|+++++||+|+.+...    ......++....  +.+
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~  175 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV---D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  175 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH---H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence            233   56899999999987654321  222322   2  3789999999999875321    122334444443  568


Q ss_pred             EEeccCCCCChHHHHHHHHHHHhCC
Q 029077          150 YEISAKSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~i~~~~~~~  174 (199)
                      +++|++++.|++++++.|.+.+.+.
T Consensus       176 ~~~Sal~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          176 ETFSSLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHHC--
T ss_pred             EEEeecCCCCHHHHHHHHHHHHhhc
Confidence            8999999999999999998877543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.82  E-value=3.4e-21  Score=152.59  Aligned_cols=154  Identities=15%  Similarity=0.183  Sum_probs=103.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      ++..+|+++|+.++|||||+++|....+.....+  |.+.......+...+..+.+|||||++.|...+...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~--GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAG--GITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBC--CCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCC--CeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            4567999999999999999999875443322211  11111111122223457899999999999999988899999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc---ccHHH---HHHHHHc--CCcEEEeccCCCCChHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQ---VTFHRKK--NLQYYEISAKSNYNFEK  162 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~---~~~~~---~~~~~~~--~~~~~~~s~~~~~~v~~  162 (199)
                      +|+|++++...+....| ..+..  .++|+++++||+|+.+..   ...+.   ..+...+  .++++++||++|.|+++
T Consensus        80 LVVda~~g~~~qT~e~l-~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~e  156 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI-QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDE  156 (501)
T ss_dssp             EEEETTTBSCTTTHHHH-HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred             EEeecccCccHHHHHHH-HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence            99999885433333332 22222  488999999999996421   11110   0011222  26899999999999999


Q ss_pred             HHHHHHH
Q 029077          163 PFLYLAR  169 (199)
Q Consensus       163 ~~~~i~~  169 (199)
                      ++++|..
T Consensus       157 Lle~I~~  163 (501)
T 1zo1_I          157 LLDAILL  163 (501)
T ss_dssp             HHHHTTT
T ss_pred             hhhhhhh
Confidence            9988764

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.81  E-value=1e-20  Score=149.84  Aligned_cols=154  Identities=18%  Similarity=0.204  Sum_probs=89.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc--CCCCCc---------------------------cccceeEEEeeEEEEecCcE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCGK   61 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   61 (199)
                      ...++|+++|+.++|||||+++|+.  +.+...                           .....|.+.......+....
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            4568999999999999999999863  222100                           00012222222212233345


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hHhcHHHHHHHHHh-hcCCCc-EEEEEeCCCCCCcc---
Q 029077           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRDLCR-VCENIP-IVLCGNKVDVKNRQ---  133 (199)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~l~~-~~~~~p-~iiv~~K~D~~~~~---  133 (199)
                      ..+.+|||||++.|...+...+..+|++|+|+|++++.   +|.....|...+.. ...++| +++++||+|+.+..   
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~  200 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE  200 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence            78999999999999888888899999999999999873   44322222222221 123677 99999999996421   


Q ss_pred             -----ccHHHHHHHHHc-------CCcEEEeccCCCCChHHHH
Q 029077          134 -----VKAKQVTFHRKK-------NLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus       134 -----~~~~~~~~~~~~-------~~~~~~~s~~~~~~v~~~~  164 (199)
                           ...+...+++..       +++++++||++|.|+.+++
T Consensus       201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                 111233455544       3569999999999998755

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.81  E-value=8.6e-20  Score=154.64  Aligned_cols=161  Identities=14%  Similarity=0.059  Sum_probs=110.8

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCC-------CCC-------ccccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (199)
                      ..++.++|+++|+.++|||||+++|....       +..       ....+.|++.......++.....+.+|||||++.
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            45678999999999999999999987521       000       1123455555544445556678899999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccc-----cHHHHHHHHHcC--
Q 029077           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN--  146 (199)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~-----~~~~~~~~~~~~--  146 (199)
                      |...+..++..+|++|+|+|++++...+ ...++..+...  ++| +|+++||+|+.+...     ..+...++...+  
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            9888888899999999999999875433 33344444333  778 789999999975221     123335555554  


Q ss_pred             ---CcEEEeccCCC--------CChHHHHHHHHHHHh
Q 029077          147 ---LQYYEISAKSN--------YNFEKPFLYLARKLA  172 (199)
Q Consensus       147 ---~~~~~~s~~~~--------~~v~~~~~~i~~~~~  172 (199)
                         ++++++||++|        .|+.++++.|.+.+.
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence               68999999999        468888888877654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.81  E-value=2.1e-20  Score=147.78  Aligned_cols=151  Identities=16%  Similarity=0.198  Sum_probs=101.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC--CCCCc------------------c---------ccceeEEEeeEEEEecCcE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK------------------Y---------EPTIGVEVHPLDFFTNCGK   61 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~--~~~~~------------------~---------~~~~~~~~~~~~~~~~~~~   61 (199)
                      ++.++|+++|..++|||||+++|+..  .+...                  +         ....|.+.......+....
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            46799999999999999999998753  22110                  0         0012333322233444566


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hHh---cHHHHHHHHHhhcCCCc-EEEEEeCCCCCC--c
Q 029077           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKN--R  132 (199)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~--~  132 (199)
                      ..+.+|||||++.|......++..+|++|+|+|++++.   +|+   ...........  .+.| +++++||+|+.+  .
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~  162 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDE  162 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCH
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCCH
Confidence            78999999999999888888899999999999999763   332   11222222222  3565 899999999973  1


Q ss_pred             c----ccHHHHHHHHHcC-----CcEEEeccCCCCChHHH
Q 029077          133 Q----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP  163 (199)
Q Consensus       133 ~----~~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~~  163 (199)
                      .    ...+...+++..+     ++++++||++|.|+.++
T Consensus       163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            1    1122334455554     68999999999998743

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.81  E-value=6.7e-20  Score=137.61  Aligned_cols=158  Identities=12%  Similarity=0.127  Sum_probs=99.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCcc----cccee----------------------EEEe------------
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIG----------------------VEVH------------   51 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~----~~~~~----------------------~~~~------------   51 (199)
                      .....+|+|+|.+|||||||+|+|++..+.+..    .+..+                      ++..            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            456689999999999999999998876653111    11111                      0000            


Q ss_pred             -----------eEEEEec-CcEEEEEEEeCCCccc-------------ccccccccccCCcEEE-EEEeCCChhhHhcHH
Q 029077           52 -----------PLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAI-IMFDVTARLTYKNVP  105 (199)
Q Consensus        52 -----------~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~  105 (199)
                                 ...+.+. .....+.+|||||...             +......++..++.++ +|+|+++..+.....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                       0001110 1136789999999642             3334456677887666 799998765544433


Q ss_pred             HHHHHHHhhcCCCcEEEEEeCCCCCCccc-cHHHHHH-HHH--cC-CcEEEeccCCCCChHHHHHHHHH
Q 029077          106 TWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTF-HRK--KN-LQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus       106 ~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-~~~~~~~-~~~--~~-~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      .+...+..  .+.|+++|+||+|+.+... ..+...- ...  .+ .+++++||++|.|+++++..|.+
T Consensus       183 ~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          183 KIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             HHHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             HHHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            44444433  3789999999999975432 2222110 001  12 35788999999999999999887

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.79  E-value=3.6e-20  Score=150.32  Aligned_cols=151  Identities=22%  Similarity=0.221  Sum_probs=81.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCC--CCC---------------------------ccccceeEEEeeEEEEecCc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTNCG   60 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~   60 (199)
                      ..+.++|+++|++++|||||+++|+...  ...                           ......|++.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            4677899999999999999999985310  000                           00012344444444444455


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh---hH--hcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCc--
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR--  132 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~--  132 (199)
                      ...+.+|||||+..|...+...+..+|++|+|+|++++.   .+  ......+..+... .++| +|+|+||+|+.+.  
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip~iIvviNKiDl~~~~~  332 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGISEIVVSVNKLDLMSWSE  332 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCCCEEEEEECGGGGTTCH
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCCeEEEEEeccccccccH
Confidence            678999999999999888888899999999999998653   22  1111111122222 2555 8999999999751  


Q ss_pred             cc----cHHHHHHH-HHcCC-----cEEEeccCCCCChH
Q 029077          133 QV----KAKQVTFH-RKKNL-----QYYEISAKSNYNFE  161 (199)
Q Consensus       133 ~~----~~~~~~~~-~~~~~-----~~~~~s~~~~~~v~  161 (199)
                      ..    ..+...+. +..++     +++++||++|.|+.
T Consensus       333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            11    11222344 34454     69999999999997

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.79  E-value=6.1e-19  Score=141.29  Aligned_cols=119  Identities=17%  Similarity=0.172  Sum_probs=80.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCC--CCC------------------ccccceeEEEeeEEEEecCcEEEEEEEeC
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDT   69 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~--~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~   69 (199)
                      ..+..+|+++|++|+|||||+++|+...  ...                  ....+.|.+.......+....+.+.+|||
T Consensus        10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT   89 (529)
T 2h5e_A           10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT   89 (529)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred             hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence            3567899999999999999999988521  100                  01123344433333444456688999999


Q ss_pred             CCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                      ||+..|......++..+|++|+|+|++++...+. ..+......  .++|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCC
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCcc
Confidence            9999988888888999999999999987642221 112222221  3789999999999864

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.78  E-value=1.6e-18  Score=142.59  Aligned_cols=117  Identities=20%  Similarity=0.162  Sum_probs=82.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCC----C---------cccc---ceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE----K---------KYEP---TIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~----~---------~~~~---~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (199)
                      .+..+|+++|++|+|||||+++|+.....    .         .+.+   ..+.+.......+....+.+++|||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            34578999999999999999998732211    0         0000   123333333334444568899999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (199)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~  130 (199)
                      +......+++.+|++++|+|+++....+.. .+...+..  .++|+++|+||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~--~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER--LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH--ccCCEEEEecCCchh
Confidence            888888889999999999998876443322 33333333  389999999999987

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=2.3e-18  Score=142.07  Aligned_cols=119  Identities=20%  Similarity=0.192  Sum_probs=83.4

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhc--CCCCC--c------cc------cceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--K------YE------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~--~~~~~--~------~~------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (199)
                      ..+..+|+|+|..|+|||||+++|+.  +....  .      ..      ...+.+.......+....+.+.+|||||+.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~   88 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV   88 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence            35678999999999999999999873  11100  0      00      012223222223333346889999999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                      .+......+++.+|++|+|+|+++..+.+....|.. +..  .++|+++|+||+|+..
T Consensus        89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK--YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred             chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence            988888888999999999999998877766665553 222  3899999999999865

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.77  E-value=5.1e-18  Score=131.93  Aligned_cols=158  Identities=15%  Similarity=0.120  Sum_probs=107.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCC--CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc----ccccccc---ccC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGLRDGY---YIH   85 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~~~~---~~~   85 (199)
                      .|+++|++|||||||++.+......  .....|......  .+..++ ...+.+||++|....    ..+...+   ...
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G--~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er  235 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG--VVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR  235 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE--EEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceee--EEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence            5899999999999999996644210  011111111111  122222 357889999997431    1222222   357


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhc---CCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~---~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      ++.++.++|++ ...+..+..|..++....   ...|.++++||.|+............+...+..++.+||+++.|+++
T Consensus       236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            99999999998 556666777776666543   36899999999999876222233345555678999999999999999


Q ss_pred             HHHHHHHHHhCCCC
Q 029077          163 PFLYLARKLAGDPN  176 (199)
Q Consensus       163 ~~~~i~~~~~~~~~  176 (199)
                      ++.+|.+.+.+.+.
T Consensus       315 L~~~i~~~l~~~~~  328 (416)
T 1udx_A          315 LKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999987654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.77  E-value=7.1e-19  Score=131.98  Aligned_cols=164  Identities=18%  Similarity=0.267  Sum_probs=84.8

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcC-CCCCcc--------ccceeEEEeeEEEEecCcEEEEEEEeCCCc-------
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG-EFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------   72 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------   72 (199)
                      ...-.++|+++|++|||||||++++.+. .++...        .++.+...........+....+.+||++|.       
T Consensus        14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~   93 (301)
T 2qnr_A           14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR   93 (301)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred             EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence            3456689999999999999999997653 333222        112111111122222334578999999997       


Q ss_pred             cccccccc-------cccc-------------CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077           73 EKFGGLRD-------GYYI-------------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (199)
Q Consensus        73 ~~~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~  132 (199)
                      +.+.....       .++.             .+++++++.+.+. .+++....  ..+.....+.++++|+||.|+...
T Consensus        94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~  170 (301)
T 2qnr_A           94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTL  170 (301)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCH
Confidence            44444333       2222             1233444444332 23333331  333333457899999999999753


Q ss_pred             cc----cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHhCCCC
Q 029077          133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  176 (199)
Q Consensus       133 ~~----~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~~  176 (199)
                      ..    ..+..++++..++.++++||++| +++++|..+++.+.+...
T Consensus       171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p  217 (301)
T 2qnr_A          171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP  217 (301)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence            22    12445778888999999999999 999999999998875443

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.76  E-value=3.4e-17  Score=121.22  Aligned_cols=119  Identities=13%  Similarity=0.136  Sum_probs=81.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccc---------
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG---------   81 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~---------   81 (199)
                      ...++|+++|.+|+|||||+|+|+...+. ...++.+.+..............+.+|||||...+......         
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            46799999999999999999998865542 12223333433334444445678999999998765433221         


Q ss_pred             cccCCcEEEEEEeCCChhhHhcH-HHHHHHHHhhcCC---CcEEEEEeCCCCCC
Q 029077           82 YYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCEN---IPIVLCGNKVDVKN  131 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~---~p~iiv~~K~D~~~  131 (199)
                      ....+|++++|+|++.. ++... ..|+..+...+..   .|+++|+||+|+..
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence            12478999999998753 34333 3667766655432   69999999999864

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.76  E-value=6.5e-18  Score=124.58  Aligned_cols=119  Identities=13%  Similarity=0.162  Sum_probs=82.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccccccc-----
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-----   84 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-----   84 (199)
                      .++.++|+++|..|+|||||+++|+...... ..+..+.+.......+......+.+|||||+..+......+++     
T Consensus        33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVR-VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             TCCEEEEEEEECTTSSHHHHHHHHHTSCCSC-CCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCCcc-cCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            4578999999999999999999988665321 1222233333333333334568999999999877655544433     


Q ss_pred             ----CCcEEEEEEeCCChhhHhcH-HHHHHHHHhhcC---CCcEEEEEeCCCCC
Q 029077           85 ----HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK  130 (199)
Q Consensus        85 ----~~d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~---~~p~iiv~~K~D~~  130 (199)
                          .+|++++|++++... +... ..|+..+.....   ..|+++|+||+|+.
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS  164 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence                789999999987654 4333 356666666543   25999999999985

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.74  E-value=6.2e-17  Score=133.79  Aligned_cols=119  Identities=17%  Similarity=0.111  Sum_probs=82.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcC--CCCCc--------cc------cceeEEEeeEEEEe-------cCcEEEEEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK--------YE------PTIGVEVHPLDFFT-------NCGKIRFYC   66 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~--~~~~~--------~~------~~~~~~~~~~~~~~-------~~~~~~~~l   66 (199)
                      ..+..+|+|+|..|+|||||+++|+..  .+...        ..      ...|.+.......+       ++..+.+.+
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            346689999999999999999998642  11110        00      01222322221222       223489999


Q ss_pred             EeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                      |||||+..|......+++.+|++|+|+|+++....+....|.. ...  .++|+++|+||+|+..
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK--YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH--cCCCEEEEEeCCCccc
Confidence            9999999988888888999999999999998765554444432 222  3799999999999864

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.73  E-value=3.8e-17  Score=134.88  Aligned_cols=119  Identities=18%  Similarity=0.177  Sum_probs=83.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhc--CCCCCc--------ccc------ceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------YEP------TIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~--~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (199)
                      ..+..+|+++|.+|+|||||+++|+.  +.....        ...      ..+.+.......+....+.+.+|||||+.
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~   86 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV   86 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence            35678999999999999999999874  222100        000      12233322223333346889999999999


Q ss_pred             cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                      .+......+++.+|++|+|+|+++..+.+....|.. +..  .+.|+++|+||+|+..
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~--~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT--YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence            988888888999999999999998776666555543 333  3899999999999865

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.73  E-value=1.9e-18  Score=129.71  Aligned_cols=133  Identities=14%  Similarity=0.076  Sum_probs=105.4

Q ss_pred             HHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChh-hHhcHH
Q 029077           28 TFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVP  105 (199)
Q Consensus        28 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  105 (199)
                      +|+.++..+.|. ..+.||.|..+. ...  .... .+.+||+  +++++.++..+++++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~--~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTP--DETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EEC--CCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEE--cCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577777778887 788899994433 332  2222 7899999  8899999999999999999999999987 688888


Q ss_pred             HHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcC--CcEEEeccCCCCChHHHHHHHH
Q 029077          106 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus       106 ~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      .|+..+..  .++|+++|+||+|+.+.....+...++...+  ..++++||++|.|++++|..+.
T Consensus       106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            99987765  4899999999999976433233445555555  8999999999999999997764

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.73  E-value=5.7e-17  Score=122.52  Aligned_cols=113  Identities=11%  Similarity=0.089  Sum_probs=71.3

Q ss_pred             EEEEEEeCCCccc-------------ccccccccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCC
Q 029077           62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV  127 (199)
Q Consensus        62 ~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~  127 (199)
                      ..+.+|||||...             +......++..+|++++|+|..+.. .......+...+..  .+.|+++|+||+
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~  208 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL  208 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence            5789999999753             2334455678999999999974332 11222233333322  378999999999


Q ss_pred             CCCCccc-cHHHHH-HHHHcCCcEEEeccCC------CCChHHHHHHHHHHHhCCCC
Q 029077          128 DVKNRQV-KAKQVT-FHRKKNLQYYEISAKS------NYNFEKPFLYLARKLAGDPN  176 (199)
Q Consensus       128 D~~~~~~-~~~~~~-~~~~~~~~~~~~s~~~------~~~v~~~~~~i~~~~~~~~~  176 (199)
                      |+.+... ..+... .....+..++++++.+      +.|+.+++..+.+.+...+.
T Consensus       209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~  265 (315)
T 1jwy_B          209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI  265 (315)
T ss_dssp             TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred             ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence            9975433 122211 0011225677766543      78899999999998877665

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.73  E-value=3.8e-17  Score=134.95  Aligned_cols=109  Identities=13%  Similarity=0.119  Sum_probs=76.0

Q ss_pred             EEEEEeCCCccc---ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc-ccH--
Q 029077           63 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA--  136 (199)
Q Consensus        63 ~~~l~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~-~~~--  136 (199)
                      .+.+|||||...   .......++..+|++|+|+|+++..+......|...+..  .+.|+++|+||+|+.... ...  
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee  252 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDD  252 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTC
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhh
Confidence            589999999654   233445678899999999999887666665555544432  267899999999986432 000  


Q ss_pred             ---------HHH----H-HHHH--------cCCcEEEeccC--------------CCCChHHHHHHHHHHHhC
Q 029077          137 ---------KQV----T-FHRK--------KNLQYYEISAK--------------SNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       137 ---------~~~----~-~~~~--------~~~~~~~~s~~--------------~~~~v~~~~~~i~~~~~~  173 (199)
                               ...    . +...        ....++++||+              +|.|+.+++..|.+.+..
T Consensus       253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence                     010    0 1111        12468999999              999999999999887754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=1.4e-18  Score=134.67  Aligned_cols=85  Identities=26%  Similarity=0.288  Sum_probs=48.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-cc-----ccceeEEEeeEE---------------EEecC-cEEEEEEEeCCC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KY-----EPTIGVEVHPLD---------------FFTNC-GKIRFYCWDTAG   71 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~-~~-----~~~~~~~~~~~~---------------~~~~~-~~~~~~l~D~~g   71 (199)
                      ++|+++|.+|||||||+|+|....... .+     .+..|.......               ..+++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            589999999999999999987654211 11     122222111100               00122 247899999999


Q ss_pred             ccc----ccccc---cccccCCcEEEEEEeCCCh
Q 029077           72 QEK----FGGLR---DGYYIHGQCAIIMFDVTAR   98 (199)
Q Consensus        72 ~~~----~~~~~---~~~~~~~d~~i~v~d~~~~   98 (199)
                      ...    .+.+.   ..+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    22222   2456899999999999874

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.72  E-value=2.9e-17  Score=127.74  Aligned_cols=160  Identities=16%  Similarity=0.205  Sum_probs=80.1

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCc-c-------ccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc---
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-Y-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---   77 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---   77 (199)
                      ...-.++|+|+|++|||||||++.|++..+... .       .++.+...........+....+.+||++|......   
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~  106 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN  106 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence            445568999999999999999999776544211 1       12222222122222223345789999999754311   


Q ss_pred             ----------------------cccccccCCcEEEEEEeCCCh-hhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCCcc
Q 029077           78 ----------------------LRDGYYIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (199)
Q Consensus        78 ----------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~  133 (199)
                                            ....++.++++.+++|..... .++.... .|+..+.   .++|+|+|+||+|+....
T Consensus       107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~  183 (418)
T 2qag_C          107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPE  183 (418)
T ss_dssp             -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHH
Confidence                                  113345555654455554432 3444443 4665553   479999999999987532


Q ss_pred             c-c---HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077          134 V-K---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       134 ~-~---~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      . .   .+....+...++.++++|+.++.+++++|..+...+
T Consensus       184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            2 2   233466777899999999999999999887777654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.70  E-value=4.6e-17  Score=125.71  Aligned_cols=113  Identities=15%  Similarity=0.121  Sum_probs=91.7

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCC----------hhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCC
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD  128 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D  128 (199)
                      .+.+.+||++|++.++..+..++++++++|+|||+++          ..++.+...|+..+...  ..+.|+++|+||.|
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence            4899999999999999999999999999999999998          78899999999888764  36899999999999


Q ss_pred             CCCccc--------------------------------cHHHHHH-----HHH--------cCCcEEEeccCCCCChHHH
Q 029077          129 VKNRQV--------------------------------KAKQVTF-----HRK--------KNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus       129 ~~~~~~--------------------------------~~~~~~~-----~~~--------~~~~~~~~s~~~~~~v~~~  163 (199)
                      +.+...                                ..+...+     +..        ..+.+++|||+++.||+++
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            854211                                1122222     222        2456789999999999999


Q ss_pred             HHHHHHHHhC
Q 029077          164 FLYLARKLAG  173 (199)
Q Consensus       164 ~~~i~~~~~~  173 (199)
                      |.++.+.+..
T Consensus       376 F~~v~~~I~~  385 (402)
T 1azs_C          376 FNDCRDIIQR  385 (402)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887753

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.69  E-value=2.8e-16  Score=126.45  Aligned_cols=117  Identities=16%  Similarity=0.107  Sum_probs=85.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCC--------------------CCccccceeEEEeeEEEEecCcEEEEEEEeCCC
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--------------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g   71 (199)
                      +.=+|+|+|+.++|||||..+|+...-                    ........|++.......+..+++.++++||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            456899999999999999999862110                    011122345555555555666789999999999


Q ss_pred             cccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                      +..|.......++-+|++|+|+|+.++-.-+....|.... .  .++|.++++||+|...
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~--~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-M--RATPVMTFVNKMDREA  166 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-H--TTCCEEEEEECTTSCC
T ss_pred             cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-H--hCCceEEEEecccchh
Confidence            9999999999999999999999999886666655664433 2  3899999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.67  E-value=6.4e-17  Score=124.10  Aligned_cols=103  Identities=8%  Similarity=-0.029  Sum_probs=70.9

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH-H
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-V  139 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~-~  139 (199)
                      .+.+.++||+|...   .....+..+|++++|+|.........+...       ..+.|.++|+||+|+.+....... .
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence            47889999999432   233445889999999998765544332211       124689999999999753222211 1


Q ss_pred             HHHH----------HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       140 ~~~~----------~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      .+..          .++.+++.+||++|.|+++++++|.+.+..
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            1211          125789999999999999999999988754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.67  E-value=5.8e-17  Score=124.68  Aligned_cols=103  Identities=12%  Similarity=0.081  Sum_probs=68.6

Q ss_pred             EEEEEEeCCCcccc-------------cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCC
Q 029077           62 IRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV  127 (199)
Q Consensus        62 ~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~  127 (199)
                      ..+.+|||||...+             ......++.++|++|+|++..+.....  ..|...+.... .+.|+++|+||+
T Consensus       136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~  213 (360)
T 3t34_A          136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKI  213 (360)
T ss_dssp             CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECG
T ss_pred             CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCC
Confidence            46899999998765             445567789999999999875443222  23333333332 367999999999


Q ss_pred             CCCCccc-cHHHH-HHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077          128 DVKNRQV-KAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus       128 D~~~~~~-~~~~~-~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |+.+... ..+.. ......+.+|+.+++.++.++++.+..
T Consensus       214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            9875332 22211 233345678999999998888765544

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.66  E-value=2.6e-17  Score=126.26  Aligned_cols=158  Identities=11%  Similarity=0.113  Sum_probs=91.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCcc----ccceeE----------------------E--------------
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGV----------------------E--------------   49 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~----~~~~~~----------------------~--------------   49 (199)
                      .....+|+|+|.+|||||||+|+|++..+.+..    ....+.                      +              
T Consensus        28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~  107 (353)
T 2x2e_A           28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  107 (353)
T ss_dssp             GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence            345679999999999999999998876552111    111110                      0              


Q ss_pred             ---------EeeEEEEec-CcEEEEEEEeCCCccc-------------ccccccccccCCc-EEEEEEeCCChhhHhcHH
Q 029077           50 ---------VHPLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQ-CAIIMFDVTARLTYKNVP  105 (199)
Q Consensus        50 ---------~~~~~~~~~-~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~  105 (199)
                               .......+. .....+.+|||||...             ++.....++..++ +++++.+++....-....
T Consensus       108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~  187 (353)
T 2x2e_A          108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  187 (353)
T ss_dssp             HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred             hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence                     000011111 1135789999999632             2334445665555 555566665432222222


Q ss_pred             HHHHHHHhhcCCCcEEEEEeCCCCCCccc-cHHHHH---HHHHcC-CcEEEeccCCCCChHHHHHHHHH
Q 029077          106 TWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVT---FHRKKN-LQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus       106 ~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-~~~~~~---~~~~~~-~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      .+...+..  .+.|+++|+||+|+.+... ..+...   +....+ ..++.+||++|.|++++++.+.+
T Consensus       188 ~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          188 KVAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            23333322  3789999999999975432 121111   000112 24678999999999999998876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.64  E-value=3.7e-16  Score=112.17  Aligned_cols=152  Identities=16%  Similarity=0.107  Sum_probs=90.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEE--------------eeEEEEe----------------cCcE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--------------HPLDFFT----------------NCGK   61 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~   61 (199)
                      ...+|+++|.+|||||||+++|+..............+.              .......                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            457899999999999999999875422111000000000              0000000                1124


Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc--cccHHHH
Q 029077           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR--QVKAKQV  139 (199)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~--~~~~~~~  139 (199)
                      +.+.+||++|.....   ..+....+.+++|+|+++...  ....+...     .+.|.++|+||+|+.+.  ....+..
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~  178 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI-----FRVADLIVINKVALAEAVGADVEKMK  178 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH-----HHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh-----hhcCCEEEEecccCCcchhhHHHHHH
Confidence            577899998851110   111125678999999876532  11111111     15788999999998653  1222333


Q ss_pred             HHHHHc--CCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          140 TFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       140 ~~~~~~--~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      ..+...  ..+++++|+++|.|+++++.+|.+.+..
T Consensus       179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            344332  4689999999999999999999988754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.61  E-value=1.2e-15  Score=128.27  Aligned_cols=117  Identities=18%  Similarity=0.161  Sum_probs=85.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCC--CCC------c--------cc--cceeEEEeeEEEE------------ecCc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK------K--------YE--PTIGVEVHPLDFF------------TNCG   60 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~--~~~------~--------~~--~~~~~~~~~~~~~------------~~~~   60 (199)
                      .+..||+|+|+.++|||||+++|+...  ...      .        ..  .|.........+.            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            356799999999999999999987531  100      0        00  1111111222222            2345


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~  130 (199)
                      .+.+.+|||||+.+|......+++.+|++|+|+|++++.+++....|.... .  .++|+++|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~--~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G--ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H--TTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H--cCCCeEEEEECCCcc
Confidence            789999999999999998999999999999999999988777766665433 2  378999999999986

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.60  E-value=3e-14  Score=108.69  Aligned_cols=82  Identities=21%  Similarity=0.062  Sum_probs=53.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCc-c-ccceeEEEeeEEEEecCc---------------EEEEEEEeCCCccccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK-Y-EPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKFG   76 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~   76 (199)
                      ++|+++|.+|||||||+|+|........ + ..|.+....  .+.+.+.               ...+.+||+||...+.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            7899999999999999999886553211 1 112221111  1222221               1578999999987642


Q ss_pred             ----ccc---cccccCCcEEEEEEeCCC
Q 029077           77 ----GLR---DGYYIHGQCAIIMFDVTA   97 (199)
Q Consensus        77 ----~~~---~~~~~~~d~~i~v~d~~~   97 (199)
                          .+.   ..+++.+|++++|+|+++
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                222   234789999999999986

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.60  E-value=9.3e-16  Score=117.28  Aligned_cols=102  Identities=9%  Similarity=-0.019  Sum_probs=62.9

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH-HHH
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV  139 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~-~~~  139 (199)
                      .+.+.++||+|...   ........+|.+++|+|++.+...+.+..   .+    -+.|.++|+||+|+.+..... ...
T Consensus       166 ~~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~~  235 (349)
T 2www_A          166 GYDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQA  235 (349)
T ss_dssp             TCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHHH
Confidence            46789999999532   12334678999999999987543222211   11    256889999999996432111 111


Q ss_pred             HHHH----------HcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       140 ~~~~----------~~~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      .+..          .+..+++.+|+++|.|+++++++|.+.+.
T Consensus       236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            1211          12456899999999999999999988764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.59  E-value=7.9e-15  Score=105.58  Aligned_cols=153  Identities=14%  Similarity=0.123  Sum_probs=87.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEe------------eEEEEec-Cc-----------------
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH------------PLDFFTN-CG-----------------   60 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~-----------------   60 (199)
                      .+..+|+++|.+|||||||+++|+...+...+.++.+.+..            ......+ +.                 
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  115 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN  115 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence            35689999999999999999998866554444444443322            1111111 10                 


Q ss_pred             --EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcc--ccH
Q 029077           61 --KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKA  136 (199)
Q Consensus        61 --~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~--~~~  136 (199)
                        ...+.+.|++|.-..   ...+-...+..+.+.|.........  .....+     ..|.++|+||+|+.+..  ...
T Consensus       116 ~~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~-----~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          116 LDEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGIM-----KTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH-----TTCSEEEEECGGGHHHHTCCHH
T ss_pred             cCCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhHh-----hcCCEEEEeccccCchhHHHHH
Confidence              113444555542110   0011122344556666432211110  001111     57889999999987532  223


Q ss_pred             HHHHHHHHc--CCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          137 KQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       137 ~~~~~~~~~--~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      +....++..  +.+++++||++|.|++++|.+|.+.+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            333444433  5789999999999999999999987753

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.58  E-value=2.3e-15  Score=121.29  Aligned_cols=120  Identities=20%  Similarity=0.121  Sum_probs=77.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCC---Cccccce----eEEEeeE-EEEec----------------------Cc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTI----GVEVHPL-DFFTN----------------------CG   60 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~---~~~~~~~----~~~~~~~-~~~~~----------------------~~   60 (199)
                      ....+|+|+|.+|+|||||+|+|++..+.   ....++.    ++..... ....+                      ++
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            45789999999999999999998876652   1111111    0000000 00000                      00


Q ss_pred             E----------EEEEEEeCCCccc-----------ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc
Q 029077           61 K----------IRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP  119 (199)
Q Consensus        61 ~----------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p  119 (199)
                      .          ..+.+|||||...           +......++..+|++++|+|+++.........|+..+...  +.|
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~p  220 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDK  220 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCC
Confidence            0          2588999999764           2234455678899999999998754444445565555432  578


Q ss_pred             EEEEEeCCCCCCc
Q 029077          120 IVLCGNKVDVKNR  132 (199)
Q Consensus       120 ~iiv~~K~D~~~~  132 (199)
                      +++|+||+|+.+.
T Consensus       221 vilVlNK~Dl~~~  233 (550)
T 2qpt_A          221 IRVVLNKADMVET  233 (550)
T ss_dssp             EEEEEECGGGSCH
T ss_pred             EEEEEECCCccCH
Confidence            9999999999764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.56  E-value=9.2e-16  Score=125.68  Aligned_cols=115  Identities=17%  Similarity=0.186  Sum_probs=85.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc--CCCCC--------------ccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG   77 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~   77 (199)
                      -||+|+|+.++|||||..+|+.  +....              ......|++.......+..+++.++++||||+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            4799999999999999999873  21110              0011235555555555666778899999999999999


Q ss_pred             cccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                      .....++-+|++|+|+|+.++-.-+....|.... .+  ++|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~-~~--~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALR-KM--GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHH-HH--TCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHH-Hc--CCCeEEEEecccccc
Confidence            9999999999999999999876555544454433 22  889999999999754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.55  E-value=4.2e-15  Score=113.42  Aligned_cols=102  Identities=12%  Similarity=-0.030  Sum_probs=65.5

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH---
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---  137 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~---  137 (199)
                      .+.+.++||||......   .....+|++++|+|++....++.+...   .    .+.|.++|+||+|+.+......   
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h----hcccCEEEEECCCCCChHHHHHHHH
Confidence            46899999999654322   245889999999999765433322111   0    1467899999999976422111   


Q ss_pred             -HHHHHHHc-------CCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          138 -QVTFHRKK-------NLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       138 -~~~~~~~~-------~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                       ........       ..+++++||++|.|++++++.|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence             11111111       356899999999999999999998764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.55  E-value=1.7e-14  Score=106.13  Aligned_cols=112  Identities=15%  Similarity=0.057  Sum_probs=68.7

Q ss_pred             EEEEEEEeCCCccccccccc------ccccCCcEEEEEEeCCChhh---HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           61 KIRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLT---YKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                      .+.+.+|||||.........      ..+.. +++++++|+....+   +.....+.... ....+.|+++|+||+|+..
T Consensus       108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI-DLRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH-HHHHTSCEEEEECCGGGCC
T ss_pred             cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH-hcccCCCeEEEEecccccc
Confidence            35899999999865432211      23455 88888888754322   22111111111 1123789999999999875


Q ss_pred             ccccHHHHH----------------------------HHHHcC--CcEEEeccCCCCChHHHHHHHHHHHhCC
Q 029077          132 RQVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       132 ~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~v~~~~~~i~~~~~~~  174 (199)
                      .....+..+                            ++...+  .+++++||++|.|+++++.+|.+.+...
T Consensus       186 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~  258 (262)
T 1yrb_A          186 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC  258 (262)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence            331111000                            112322  4799999999999999999999887543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.52  E-value=1.4e-13  Score=114.19  Aligned_cols=117  Identities=21%  Similarity=0.204  Sum_probs=80.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcC--------CCCC--------ccccceeEEEeeEEEEe--c-----CcEEEEEEEe
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTG--------EFEK--------KYEPTIGVEVHPLDFFT--N-----CGKIRFYCWD   68 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~--------~~~~--------~~~~~~~~~~~~~~~~~--~-----~~~~~~~l~D   68 (199)
                      +.-+|+|+|+.++|||||..+|+..        ....        ......|++.....+.+  .     ..++.++++|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            3448999999999999999997731        1110        01123344443333222  2     2468999999


Q ss_pred             CCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                      |||+.+|.......++-+|++|+|+|+.++-..+....|......   ++|.++++||+|...
T Consensus        92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred             CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEccccccC
Confidence            999999999999999999999999999987665555555554433   899999999999753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.48  E-value=2.7e-13  Score=103.96  Aligned_cols=84  Identities=17%  Similarity=0.067  Sum_probs=52.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCC-C-----ccccceeEEEeeEE--------EEec-----CcEEEEEEEeCCCccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFE-K-----KYEPTIGVEVHPLD--------FFTN-----CGKIRFYCWDTAGQEK   74 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~-~-----~~~~~~~~~~~~~~--------~~~~-----~~~~~~~l~D~~g~~~   74 (199)
                      ++|+++|.+|||||||+|++...... .     ...++.|.......        +...     .....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            68999999999999999998754311 1     12233332110000        0000     0235799999999876


Q ss_pred             ccc----cc---cccccCCcEEEEEEeCCC
Q 029077           75 FGG----LR---DGYYIHGQCAIIMFDVTA   97 (199)
Q Consensus        75 ~~~----~~---~~~~~~~d~~i~v~d~~~   97 (199)
                      +..    +.   ...++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            432    21   234689999999999985

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.44  E-value=5e-13  Score=110.40  Aligned_cols=165  Identities=13%  Similarity=0.148  Sum_probs=97.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCC-CCcc-ccce------------------------------------------
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKY-EPTI------------------------------------------   46 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~-~~~~------------------------------------------   46 (199)
                      ....+|+|+|..++|||||+|.|++..+ +... ..|.                                          
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            4456999999999999999999887554 1110 0010                                          


Q ss_pred             -----eEEEeeEEEEec-CcEEEEEEEeCCCcccc-------------cccccccc-cCCcEEEEEEeCCChhhHhcHHH
Q 029077           47 -----GVEVHPLDFFTN-CGKIRFYCWDTAGQEKF-------------GGLRDGYY-IHGQCAIIMFDVTARLTYKNVPT  106 (199)
Q Consensus        47 -----~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~  106 (199)
                           +++.......+. .....+.++||||....             ......++ ..+|++++|+|++..........
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                 000001111110 11235789999995431             11223333 57899999999986543333323


Q ss_pred             HHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHH----cC-CcEEEeccCCCCChHHHHHHHHHH---HhCCCCC
Q 029077          107 WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK----KN-LQYYEISAKSNYNFEKPFLYLARK---LAGDPNL  177 (199)
Q Consensus       107 ~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~----~~-~~~~~~s~~~~~~v~~~~~~i~~~---~~~~~~~  177 (199)
                      +...+..  .+.|+++|+||+|+.+.............    .+ .+++.+||++|.|++++++.+.+.   +.+.|.+
T Consensus       209 ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y  285 (772)
T 3zvr_A          209 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY  285 (772)
T ss_dssp             HHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch
Confidence            4444433  27899999999999754332211111111    12 246778999999999999998873   5455544

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.40  E-value=2.6e-12  Score=98.56  Aligned_cols=116  Identities=14%  Similarity=0.020  Sum_probs=75.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc----c---cccccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----L---RDGYYI   84 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~---~~~~~~   84 (199)
                      ...+|+++|.|+||||||+|+|.+..  .......+++..+....+...+..+.+.|+||.-....    .   ....++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            34689999999999999999977543  22233344455554444444567899999999643211    1   123467


Q ss_pred             CCcEEEEEEeCCChhhHhcHHHHHHHHHhh---cCCCcEEEEEeCCCCCC
Q 029077           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKN  131 (199)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~---~~~~p~iiv~~K~D~~~  131 (199)
                      .+|++++|+|++++..-  ......++...   ..+.|.+++.||.|...
T Consensus       149 ~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g  196 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKGG  196 (376)
T ss_dssp             HCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred             hcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence            89999999999986432  22222233322   24678888999999743

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.39  E-value=1.6e-12  Score=97.49  Aligned_cols=95  Identities=16%  Similarity=0.087  Sum_probs=77.8

Q ss_pred             cccccccccccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc---cHHHHHHHHHcCC
Q 029077           72 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNL  147 (199)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~---~~~~~~~~~~~~~  147 (199)
                      ++++..+.+.+++++|++++|+|++++. ++..+..|+..+..  .++|+++|+||+|+.+...   ..+...+++..++
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~  143 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY  143 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence            5677788888999999999999999886 78888889887665  4899999999999976431   2334566777789


Q ss_pred             cEEEeccCCCCChHHHHHHHH
Q 029077          148 QYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus       148 ~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      +++++||++|.|+++++..+.
T Consensus       144 ~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          144 DVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             EEEECCTTTCTTHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHhhcc
Confidence            999999999999999887653

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.36  E-value=2.6e-12  Score=97.73  Aligned_cols=102  Identities=8%  Similarity=0.015  Sum_probs=61.8

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHH-H
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-Q  138 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~-~  138 (199)
                      .+.+.++||+|.....   ......+|.+++++|.......+.+....   .    ..+.++++||+|+.. ...... .
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h----ccccEEEEEchhccCchhHHHHHH
Confidence            5688999999964321   23357899999999986543211111111   1    235577779999753 221111 1


Q ss_pred             HHHHHH----------cCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          139 VTFHRK----------KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       139 ~~~~~~----------~~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      ..+...          +..+++.+|+++|.|++++++.|.+...
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            122111          1356889999999999999999988654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.28  E-value=3.4e-12  Score=89.26  Aligned_cols=104  Identities=6%  Similarity=-0.085  Sum_probs=68.2

Q ss_pred             CCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHH----Hhh--cCCCcEEEEEeCC-CCCCccccHHHHHH
Q 029077           69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL----CRV--CENIPIVLCGNKV-DVKNRQVKAKQVTF  141 (199)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l----~~~--~~~~p~iiv~~K~-D~~~~~~~~~~~~~  141 (199)
                      .+|+..++.+|+.|+.++|++|||+|++|.+.++ ...-+..+    ...  ..+.|++|++||. |++..-...+..+.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~  187 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  187 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence            3478899999999999999999999999886543 33322222    222  2578999999995 77654433333221


Q ss_pred             HH----HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          142 HR----KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       142 ~~----~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      ..    .....+..|||.+|.|+.+-++||.+.+..
T Consensus       188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence            11    134568999999999999999999887654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.28  E-value=3.3e-12  Score=98.41  Aligned_cols=90  Identities=16%  Similarity=-0.010  Sum_probs=48.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCc---------------EEEEEEEeCCCcccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKF   75 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~   75 (199)
                      ...++|+++|.+|||||||+|+|..........+....+.....+.+.+.               ...+.+||+||....
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            34579999999999999999998765432211111111111112222221               235899999998764


Q ss_pred             cc-------cccccccCCcEEEEEEeCCChhh
Q 029077           76 GG-------LRDGYYIHGQCAIIMFDVTARLT  100 (199)
Q Consensus        76 ~~-------~~~~~~~~~d~~i~v~d~~~~~s  100 (199)
                      .+       ....+++.+|++++|+|+++..+
T Consensus       100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A          100 AHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             -------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             cchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            43       23456789999999999986544

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.17  E-value=4.4e-11  Score=87.61  Aligned_cols=104  Identities=6%  Similarity=-0.108  Sum_probs=73.8

Q ss_pred             CCCcccccccccccccCCcEEEEEEeCCChhhHhcHHH----HHHHHHhh--cCCCcEEEEEeC-CCCCCccccHHHHHH
Q 029077           69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT----WHRDLCRV--CENIPIVLCGNK-VDVKNRQVKAKQVTF  141 (199)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~----~~~~l~~~--~~~~p~iiv~~K-~D~~~~~~~~~~~~~  141 (199)
                      .+|+...+.+++.|+.++|++|+|+|++|.+.++ ...    ....+.+.  ..+.|++|++|| .|+.......+..+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4678899999999999999999999999987544 222    22233222  368999999996 688765443333222


Q ss_pred             HH----HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          142 HR----KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       142 ~~----~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                      ..    .....+..|||.+|+|+.+-++||.+.+..
T Consensus       273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            11    134558999999999999999999988754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.16  E-value=1.3e-09  Score=84.06  Aligned_cols=87  Identities=16%  Similarity=0.067  Sum_probs=52.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCC-CCccccceeEEEeeEEEEecCc---------------EEEEEEEeCCCccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEK   74 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~   74 (199)
                      ....+|+++|++|||||||+|.|.+... .....|..........+.+.+.               ...+.+||++|...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            3457999999999999999999876443 2111111111111112222221               13689999999543


Q ss_pred             c-------cccccccccCCcEEEEEEeCCC
Q 029077           75 F-------GGLRDGYYIHGQCAIIMFDVTA   97 (199)
Q Consensus        75 ~-------~~~~~~~~~~~d~~i~v~d~~~   97 (199)
                      .       .......++.+|++++|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2       1123344688999999999864

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.95  E-value=1.2e-09  Score=83.95  Aligned_cols=96  Identities=19%  Similarity=0.200  Sum_probs=73.5

Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH-H----HHHHHHc
Q 029077           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-Q----VTFHRKK  145 (199)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~-~----~~~~~~~  145 (199)
                      ..+.|+.....+.+.++++++|+|+++..     ..|...+.+...++|+++|+||+|+.+.....+ .    ...++..
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~  129 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQL  129 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHc
Confidence            35678888888888999999999999853     446666666667899999999999976443221 1    2345666


Q ss_pred             CC---cEEEeccCCCCChHHHHHHHHHHH
Q 029077          146 NL---QYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       146 ~~---~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      ++   .++.+||++|.|++++++.|.+..
T Consensus       130 g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          130 GLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             TCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            77   799999999999999999887654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.93  E-value=2.8e-09  Score=82.89  Aligned_cols=139  Identities=16%  Similarity=0.185  Sum_probs=67.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCcccc--ceeEEEeeEEEEecC--cEEEEEEEeCCCcccccc-----------
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPLDFFTNC--GKIRFYCWDTAGQEKFGG-----------   77 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~-----------   77 (199)
                      .++++|+|++|||||||+|.+++..+......  ..+.......+....  -...+.++|++|......           
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            35799999999999999999765433221111  112222222222222  224788999987532100           


Q ss_pred             ---cc----ccc---------ccCC--cE-EEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH
Q 029077           78 ---LR----DGY---------YIHG--QC-AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ  138 (199)
Q Consensus        78 ---~~----~~~---------~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~  138 (199)
                         ..    ..+         ...+  ++ ++++.|...+-+..+ ..++..+   ..+.|+|+|.||+|..........
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-ieilk~L---~~~~~vI~Vi~KtD~Lt~~E~~~l  197 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-LVTMKKL---DSKVNIIPIIAKADAISKSELTKF  197 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-HHHHHHT---CSCSEEEEEESCGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-HHHHHHH---hhCCCEEEEEcchhccchHHHHHH
Confidence               00    001         1122  23 445556543322221 1122222   258999999999998653322221


Q ss_pred             H----HHHHHcCCcEEEeccC
Q 029077          139 V----TFHRKKNLQYYEISAK  155 (199)
Q Consensus       139 ~----~~~~~~~~~~~~~s~~  155 (199)
                      .    ......+++++.+|.-
T Consensus       198 ~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          198 KIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             HHHHHHHHBTTBCCCCCCC--
T ss_pred             HHHHHHHHHHcCCcEEecCCC
Confidence            1    2234456777777643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.91  E-value=2.7e-10  Score=87.60  Aligned_cols=135  Identities=11%  Similarity=0.040  Sum_probs=75.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCC-----CCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc----c---
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEF-----EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----D---   80 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~----~---   80 (199)
                      ..+|+++|.+|+|||||+|+|+....     .....+..|++.....+.+...   +.++||||........    .   
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            35899999999999999999875421     1223445566655555554433   7899999964432111    1   


Q ss_pred             -cc--ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHH-HHHHcCCcEEEec
Q 029077           81 -GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEIS  153 (199)
Q Consensus        81 -~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~-~~~~~~~~~~~~s  153 (199)
                       .+  ....+.++++++.....-...+.. +..+.  ..+.|+++++||.|..+........+ +.+..+......+
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~--~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS--GGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSSC
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEE-EEEec--CCCceEEEEecCccccccccHHHHHHHHHHHhCCccCCCc
Confidence             11  245677888887632210010000 00011  13689999999999987655554443 3444454433333

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.91  E-value=1.2e-09  Score=86.86  Aligned_cols=152  Identities=13%  Similarity=0.050  Sum_probs=84.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc-----CCCCC-----cccc-----------ceeEEEeeEEEE-------------
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLT-----GEFEK-----KYEP-----------TIGVEVHPLDFF-------------   56 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~-----~~~~~-----~~~~-----------~~~~~~~~~~~~-------------   56 (199)
                      .+...|+++|.+||||||+++.|..     +.-..     .+.+           ..++++......             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            3456899999999999999999762     11100     0000           001111110000             


Q ss_pred             ecCcEEEEEEEeCCCcccccc-cccc---c--ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcE-EEEEeCCCC
Q 029077           57 TNCGKIRFYCWDTAGQEKFGG-LRDG---Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDV  129 (199)
Q Consensus        57 ~~~~~~~~~l~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~-iiv~~K~D~  129 (199)
                      .....+.+.++||||...... ....   .  +..+|.+++|+|+.....   .......+..   ..|+ ++|.||.|.
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~---~~~i~gvVlNK~D~  252 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD---KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH---HHCCCCEEEECTTS
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh---hcCceEEEEeCCcc
Confidence            001356889999999654221 1111   1  227899999999987542   2222222322   2564 788999998


Q ss_pred             CCccccHHHHHHHHHcCCcE------------------EEeccCCCCC-hHHHHHHHHHH
Q 029077          130 KNRQVKAKQVTFHRKKNLQY------------------YEISAKSNYN-FEKPFLYLARK  170 (199)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-v~~~~~~i~~~  170 (199)
                      ......  ........+.++                  +.+|+..|.| +.++++++.+.
T Consensus       253 ~~~~g~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGGG--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCTH--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchHH--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            753221  222233333332                  3368889988 99888887765

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.90  E-value=2e-10  Score=88.45  Aligned_cols=142  Identities=13%  Similarity=0.056  Sum_probs=79.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCC----CCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc--------c
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGE----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------D   80 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~   80 (199)
                      ..+|+++|.+|+|||||+|+|+...    ......+..|++.....+.....   +.++||||........        .
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            3589999999999999999987541    11122223344444444444332   7899999964322111        1


Q ss_pred             ccc--cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HHHHHcCCcEEEeccCCC
Q 029077           81 GYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSN  157 (199)
Q Consensus        81 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~  157 (199)
                      .++  ...+.++++++.....-+..+.. +..+.  ..+.|+++++||.|..+........ .+.+..+......++...
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~~  315 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRYA  315 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGGT
T ss_pred             HHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchhh
Confidence            111  56788889988743211100000 00011  1367999999999987655444443 344455655555555444


Q ss_pred             CCh
Q 029077          158 YNF  160 (199)
Q Consensus       158 ~~v  160 (199)
                      .++
T Consensus       316 ~~~  318 (369)
T 3ec1_A          316 AEF  318 (369)
T ss_dssp             TTC
T ss_pred             hhc
Confidence            443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.87  E-value=1.8e-08  Score=78.29  Aligned_cols=160  Identities=18%  Similarity=0.190  Sum_probs=85.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccce-eEE--EeeEEEEecCcEEEEEEEeCCCccccccccccc-----c
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-GVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----Y   83 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~-----~   83 (199)
                      ....++++|++|||||||+|.+.+-.......-+. +..  ....... ......+.++|++|..........+     +
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L  146 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  146 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence            34589999999999999999976522211111111 111  1111111 1111257889999853211111111     2


Q ss_pred             cCCcEEEEEEeCC--ChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC---------CccccHH----HHHHH----HH
Q 029077           84 IHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK---------NRQVKAK----QVTFH----RK  144 (199)
Q Consensus        84 ~~~d~~i~v~d~~--~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~---------~~~~~~~----~~~~~----~~  144 (199)
                      ...+..++ ++..  .....    .....+..  .+.|+++|.||.|+-         +.....+    ...++    ..
T Consensus       147 ~~~~~~~~-lS~G~~~kqrv----~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~  219 (413)
T 1tq4_A          147 YEYDFFII-ISATRFKKNDI----DIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  219 (413)
T ss_dssp             GGCSEEEE-EESSCCCHHHH----HHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCeEE-eCCCCccHHHH----HHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            33455554 6765  22111    12222222  278999999999852         1111111    12232    12


Q ss_pred             cC---CcEEEecc--CCCCChHHHHHHHHHHHhCCCCCce
Q 029077          145 KN---LQYYEISA--KSNYNFEKPFLYLARKLAGDPNLHF  179 (199)
Q Consensus       145 ~~---~~~~~~s~--~~~~~v~~~~~~i~~~~~~~~~~~~  179 (199)
                      .+   ...+.+|+  .++.|++++.+.+.+.+.+.++..+
T Consensus       220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~~  259 (413)
T 1tq4_A          220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHNF  259 (413)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHHH
T ss_pred             cCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhHH
Confidence            22   35788899  6667799999999999877665543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.85  E-value=7.6e-09  Score=76.71  Aligned_cols=101  Identities=12%  Similarity=0.047  Sum_probs=70.4

Q ss_pred             EeCCCcc-cccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHc
Q 029077           67 WDTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK  145 (199)
Q Consensus        67 ~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~  145 (199)
                      -..||+. .........+.++|+++.|+|++++.+...     ..+.+...++|.++|+||+|+.+........++.+..
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~-----~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~   78 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN-----PMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQ   78 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC-----HHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTT
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC-----HHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhc
Confidence            3467764 233344556789999999999999877653     1122223589999999999998743333344555566


Q ss_pred             CCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          146 NLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       146 ~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      +++++.+||.++.|+++++..+.+.+.
T Consensus        79 g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           79 GIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             TCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             CCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            789999999999999999988877664

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.81  E-value=1.4e-08  Score=74.79  Aligned_cols=135  Identities=19%  Similarity=0.273  Sum_probs=66.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccc------ccee-EEEeeEEEEecCc--EEEEEEEeCCCccccccc-----
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE------PTIG-VEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGL-----   78 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~------~~~~-~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~-----   78 (199)
                      .++++++|++|||||||+|.+.+...+....      +... .......+.....  ...++++|++|.......     
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            3789999999999999999877422211100      0000 0001111111111  236789999874321000     


Q ss_pred             -c----------------------cccccCCcEEEEEEeCC-ChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc
Q 029077           79 -R----------------------DGYYIHGQCAIIMFDVT-ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (199)
Q Consensus        79 -~----------------------~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~  134 (199)
                       .                      ...+..+.+.++++|.. .+-.-.. ...+..+.   ...++++|.+|+|......
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~~~vI~Vi~K~D~lt~~e  157 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KVVNIIPVIAKADTMTLEE  157 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TTSEEEEEETTGGGSCHHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hcCcEEEEEeccccCCHHH
Confidence             0                      00122457888888854 2211111 22233333   2489999999999865332


Q ss_pred             cH----HHHHHHHHcCCcEEE
Q 029077          135 KA----KQVTFHRKKNLQYYE  151 (199)
Q Consensus       135 ~~----~~~~~~~~~~~~~~~  151 (199)
                      ..    .........++.+|.
T Consensus       158 ~~~~k~~i~~~l~~~~i~i~~  178 (270)
T 3sop_A          158 KSEFKQRVRKELEVNGIEFYP  178 (270)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHHHHcCccccC
Confidence            22    122344556666554

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.79  E-value=4.7e-09  Score=80.77  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=71.5

Q ss_pred             CcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH-H----HHHHHHc
Q 029077           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-Q----VTFHRKK  145 (199)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~-~----~~~~~~~  145 (199)
                      .++.|+.....+...++++++|+|+++..+     .|...+.+...+.|+++|+||.|+.......+ .    ...++..
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~  131 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL  131 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence            467788888888899999999999998763     34444445556899999999999976433221 1    2335566


Q ss_pred             CC---cEEEeccCCCCChHHHHHHHHHHH
Q 029077          146 NL---QYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       146 ~~---~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      +.   .++.+||++|.|++++++.+.+..
T Consensus       132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          132 GLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             TCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            66   689999999999999999887654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.66  E-value=1.9e-08  Score=72.59  Aligned_cols=40  Identities=23%  Similarity=0.335  Sum_probs=31.5

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|..  .-.-.|++++..+|+++++|||+.+     +|...+.
T Consensus       143 ~~~LSgGq--~QRv~iAral~~~p~llllDEPts~-----LD~~~~~  182 (235)
T 3tif_A          143 PNQLSGGQ--QQRVAIARALANNPPIILADQPTWA-----LDSKTGE  182 (235)
T ss_dssp             GGGSCHHH--HHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHH
T ss_pred             hhhCCHHH--HHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHH
Confidence            45555543  3456699999999999999999999     9987653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.65  E-value=3.8e-09  Score=77.93  Aligned_cols=40  Identities=18%  Similarity=0.205  Sum_probs=31.3

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++|.  +.-.-.|++++..+|+++++|||+.+     +|...++
T Consensus       141 ~~~LSgG--qkQRv~iAraL~~~P~lLlLDEPts~-----LD~~~~~  180 (275)
T 3gfo_A          141 THCLSFG--QKKRVAIAGVLVMEPKVLILDEPTAG-----LDPMGVS  180 (275)
T ss_dssp             GGGSCHH--HHHHHHHHHHHTTCCSEEEEECTTTT-----CCHHHHH
T ss_pred             cccCCHH--HHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHH
Confidence            3445444  34456799999999999999999999     9987653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.65  E-value=3.4e-08  Score=73.22  Aligned_cols=59  Identities=19%  Similarity=0.190  Sum_probs=35.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (199)
                      ...++|+++|.+|+|||||+|+|.+... ....+..|++.....+..+   ..+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQWVKVG---KELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCC-C------------CCEEET---TTEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeEEEEeC---CCEEEEECcCcC
Confidence            4568999999999999999999775432 2333444555443333322   257899999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.62  E-value=1.7e-08  Score=74.06  Aligned_cols=57  Identities=21%  Similarity=0.156  Sum_probs=34.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (199)
                      ++++++|.+|+|||||+|+|..... ....++.|++.....+..+   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc-cccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence            6999999999999999999775443 2334455555443333222   2578999999654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.60  E-value=5.4e-08  Score=74.30  Aligned_cols=40  Identities=28%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|.  +.-.-.|++++..+|+++++|||+.+     ||...+.
T Consensus       161 ~~~LSGG--qkQRVaIArAL~~~P~lLLlDEPTs~-----LD~~~~~  200 (366)
T 3tui_C          161 PSNLSGG--QKQRVAIARALASNPKVLLCDQATSA-----LDPATTR  200 (366)
T ss_dssp             TTTSCHH--HHHHHHHHHHTTTCCSEEEEESTTTT-----SCHHHHH
T ss_pred             hhhCCHH--HHHHHHHHHHHhcCCCEEEEECCCcc-----CCHHHHH
Confidence            3455544  44456799999999999999999999     9987653

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.53  E-value=3.7e-08  Score=75.10  Aligned_cols=39  Identities=31%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ...++|.  +.-.-.|++++..+|+++++|||+.+     +|...+
T Consensus       136 ~~~LSGG--q~QRValArAL~~~P~lLLLDEPts~-----LD~~~r  174 (359)
T 3fvq_A          136 PHELSGG--QQQRAALARALAPDPELILLDEPFSA-----LDEQLR  174 (359)
T ss_dssp             GGGSCHH--HHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHH
T ss_pred             hhhCCHH--HHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHH
Confidence            3455554  44456799999999999999999999     998764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.51  E-value=5.4e-08  Score=71.50  Aligned_cols=39  Identities=36%  Similarity=0.407  Sum_probs=30.6

Q ss_pred             ccCCCCChHHHHHHHHHHHhC------CCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAG------DPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~------~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..++|...+  .-.|++++..      +|+++++|||+.+     +|...++
T Consensus       140 ~~LSgGq~Q--Rv~iAraL~~~~~~~~~p~lLllDEPts~-----LD~~~~~  184 (266)
T 4g1u_C          140 RVLSGGEQQ--RVQLARVLAQLWQPQPTPRWLFLDEPTSA-----LDLYHQQ  184 (266)
T ss_dssp             GGCCHHHHH--HHHHHHHHHHTCCSSCCCEEEEECCCCSS-----CCHHHHH
T ss_pred             ccCCHHHHH--HHHHHHHHhcccccCCCCCEEEEeCcccc-----CCHHHHH
Confidence            445544334  4669999998      9999999999999     9987653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.51  E-value=9.9e-08  Score=68.37  Aligned_cols=40  Identities=28%  Similarity=0.308  Sum_probs=31.1

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|...+  .-.|++++..+|+++++|||+.+     +|...++
T Consensus       138 ~~~LSgGq~q--rv~laral~~~p~lllLDEPt~~-----LD~~~~~  177 (224)
T 2pcj_A          138 PYELSGGEQQ--RVAIARALANEPILLFADEPTGN-----LDSANTK  177 (224)
T ss_dssp             GGGSCHHHHH--HHHHHHHTTTCCSEEEEESTTTT-----CCHHHHH
T ss_pred             hhhCCHHHHH--HHHHHHHHHcCCCEEEEeCCCCC-----CCHHHHH
Confidence            3445544333  46699999999999999999999     9987653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.51  E-value=4e-07  Score=64.67  Aligned_cols=33  Identities=21%  Similarity=0.304  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|...++
T Consensus       138 qkqrv~laraL~~~p~lllLDEPts~-----LD~~~~~  170 (214)
T 1sgw_A          138 TIRRVQLASTLLVNAEIYVLDDPVVA-----IDEDSKH  170 (214)
T ss_dssp             HHHHHHHHHHTTSCCSEEEEESTTTT-----SCTTTHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCCcC-----CCHHHHH
Confidence            44456799999999999999999999     9987653

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.50  E-value=1.8e-07  Score=73.17  Aligned_cols=140  Identities=18%  Similarity=0.084  Sum_probs=77.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc-----CCCC-----Ccc-----------ccceeEEEeeEEEEe-------------
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT-----GEFE-----KKY-----------EPTIGVEVHPLDFFT-------------   57 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~-----~~~~-----~~~-----------~~~~~~~~~~~~~~~-------------   57 (199)
                      +...|+++|++||||||++..|..     +.-.     ..+           ....+.+........             
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            467899999999999999988652     1100     000           001122111110000             


Q ss_pred             cCcEEEEEEEeCCCcccccccc-c-----ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC
Q 029077           58 NCGKIRFYCWDTAGQEKFGGLR-D-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (199)
Q Consensus        58 ~~~~~~~~l~D~~g~~~~~~~~-~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~  131 (199)
                      ....+.+.++||+|........ .     .....+|.+++|+|++....   .......+...  -.+..+|.||.|...
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~--~~i~gVIlTKlD~~~  253 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA--TPIGSIIVTKLDGSA  253 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS--CTTEEEEEECCSSCS
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh--CCCeEEEEECCCCcc
Confidence            0123788999999954322111 1     11235789999999886532   22233333322  234568899999875


Q ss_pred             ccccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077          132 RQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (199)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      ..-  .........+.++.+++.  |+++
T Consensus       254 ~gG--~~ls~~~~~g~PI~fig~--Ge~v  278 (443)
T 3dm5_A          254 KGG--GALSAVAATGAPIKFIGT--GEKI  278 (443)
T ss_dssp             SHH--HHHHHHHTTCCCEEEEEC--SSST
T ss_pred             ccc--HHHHHHHHHCCCEEEEEc--CCCh
Confidence            432  233445567888777765  6655

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.49  E-value=3.5e-07  Score=70.23  Aligned_cols=39  Identities=21%  Similarity=0.363  Sum_probs=30.9

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .+.++|.  +.-.-.|++++..+|+++++|||+.+     ||...+
T Consensus       131 p~~LSGG--qrQRVaiArAL~~~P~lLLLDEPts~-----LD~~~~  169 (381)
T 3rlf_A          131 PKALSGG--QRQRVAIGRTLVAEPSVFLLDEPLSN-----LDAALR  169 (381)
T ss_dssp             GGGSCHH--HHHHHHHHHHHHHCCSEEEEESTTTT-----SCHHHH
T ss_pred             hhHCCHH--HHHHHHHHHHHHcCCCEEEEECCCcC-----CCHHHH
Confidence            3455544  44456799999999999999999999     998754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.48  E-value=4.3e-07  Score=69.72  Aligned_cols=40  Identities=15%  Similarity=0.268  Sum_probs=32.6

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|..-+.  -.|++++..+|+++++|||+.+     ||....+
T Consensus       139 ~~~LSGGq~QR--valArAL~~~P~lLLLDEP~s~-----LD~~~r~  178 (372)
T 1v43_A          139 PAQLSGGQRQR--VAVARAIVVEPDVLLMDEPLSN-----LDAKLRV  178 (372)
T ss_dssp             TTTCCSSCHHH--HHHHHHHTTCCSEEEEESTTTT-----SCHHHHH
T ss_pred             hhhCCHHHHHH--HHHHHHHhcCCCEEEEcCCCcc-----CCHHHHH
Confidence            45667665555  5699999999999999999999     9987653

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.47  E-value=2.3e-07  Score=68.03  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.++|...  -.-.|++++..+|+++++|||+.+     +|...++
T Consensus       158 ~~LSgGqk--QRv~lAraL~~~p~lllLDEPts~-----LD~~~~~  196 (263)
T 2olj_A          158 DSLSGGQA--QRVAIARALAMEPKIMLFDEPTSA-----LDPEMVG  196 (263)
T ss_dssp             GGSCHHHH--HHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHH
T ss_pred             hhCCHHHH--HHHHHHHHHHCCCCEEEEeCCccc-----CCHHHHH
Confidence            44554433  446699999999999999999999     9987653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.46  E-value=5.4e-07  Score=69.22  Aligned_cols=39  Identities=15%  Similarity=0.268  Sum_probs=31.1

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .+.++|..  .-.-.|++++..+|+++++|||+.+     ||....
T Consensus       137 ~~~LSGGq--~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r  175 (372)
T 1g29_1          137 PRELSGGQ--RQRVALGRAIVRKPQVFLMDEPLSN-----LDAKLR  175 (372)
T ss_dssp             GGGSCHHH--HHHHHHHHHHHTCCSEEEEECTTTT-----SCHHHH
T ss_pred             cccCCHHH--HHHHHHHHHHhcCCCEEEECCCCcc-----CCHHHH
Confidence            35555544  3456799999999999999999999     998765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.46  E-value=1.3e-07  Score=69.88  Aligned_cols=40  Identities=28%  Similarity=0.438  Sum_probs=31.1

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|...  -.-.|++++..+|+++++|||+.+     +|...++
T Consensus       159 ~~~LSgGqk--qRv~lAraL~~~p~lLlLDEPts~-----LD~~~~~  198 (279)
T 2ihy_A          159 IGYLSTGEK--QRVMIARALMGQPQVLILDEPAAG-----LDFIARE  198 (279)
T ss_dssp             GGGSCHHHH--HHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHH
T ss_pred             hhhCCHHHH--HHHHHHHHHhCCCCEEEEeCCccc-----cCHHHHH
Confidence            344554433  446699999999999999999999     9987653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.46  E-value=3.9e-07  Score=66.48  Aligned_cols=40  Identities=28%  Similarity=0.449  Sum_probs=31.2

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|...+  .-.|++++..+|+++++|||+.+     +|...++
T Consensus       126 ~~~LSgGq~q--rv~lAraL~~~p~lllLDEPts~-----LD~~~~~  165 (253)
T 2nq2_C          126 FTSLSGGQRQ--LILIARAIASECKLILLDEPTSA-----LDLANQD  165 (253)
T ss_dssp             GGGSCHHHHH--HHHHHHHHHTTCSEEEESSSSTT-----SCHHHHH
T ss_pred             hhhCCHHHHH--HHHHHHHHHcCCCEEEEeCCccc-----CCHHHHH
Confidence            3445544444  46699999999999999999999     9987653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.44  E-value=2.8e-07  Score=66.68  Aligned_cols=40  Identities=28%  Similarity=0.312  Sum_probs=31.2

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|...+  .-.|++++..+|+++++|||+.+     +|...++
T Consensus       124 ~~~LSgGqkq--Rv~lAral~~~p~lllLDEPts~-----LD~~~~~  163 (240)
T 2onk_A          124 PARLSGGERQ--RVALARALVIQPRLLLLDEPLSA-----VDLKTKG  163 (240)
T ss_dssp             GGGSCHHHHH--HHHHHHHHTTCCSSBEEESTTSS-----CCHHHHH
T ss_pred             hhhCCHHHHH--HHHHHHHHHcCCCEEEEeCCccc-----CCHHHHH
Confidence            3455554444  45699999999999999999999     9987653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.42  E-value=2.6e-07  Score=67.77  Aligned_cols=40  Identities=23%  Similarity=0.238  Sum_probs=31.1

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|...+  .-.|++++..+|+++++|||+.+     +|...++
T Consensus       151 ~~~LSgGq~q--Rv~lAraL~~~p~lllLDEPts~-----LD~~~~~  190 (262)
T 1b0u_A          151 PVHLSGGQQQ--RVSIARALAMEPDVLLFDEPTSA-----LDPELVG  190 (262)
T ss_dssp             GGGSCHHHHH--HHHHHHHHHTCCSEEEEESTTTT-----SCHHHHH
T ss_pred             cccCCHHHHH--HHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHH
Confidence            3445544334  46699999999999999999999     9987653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.39  E-value=8.9e-07  Score=67.49  Aligned_cols=40  Identities=28%  Similarity=0.305  Sum_probs=31.3

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|..  .-.-.|++++..+|+++++|||+.+     ||....+
T Consensus       143 ~~~LSGGq--~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~  182 (355)
T 1z47_A          143 PHELSGGQ--QQRVALARALAPRPQVLLFDEPFAA-----IDTQIRR  182 (355)
T ss_dssp             GGGSCHHH--HHHHHHHHHHTTCCSEEEEESTTCC-----SSHHHHH
T ss_pred             cccCCHHH--HHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHH
Confidence            34555543  3456799999999999999999999     9987653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.39  E-value=7.5e-07  Score=65.03  Aligned_cols=40  Identities=25%  Similarity=0.374  Sum_probs=31.1

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|...  -.-.|++++..+|+++++|||+.+     +|...++
T Consensus       144 ~~~LSgGq~--qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~  183 (256)
T 1vpl_A          144 VSTYSKGMV--RKLLIARALMVNPRLAILDEPTSG-----LDVLNAR  183 (256)
T ss_dssp             GGGCCHHHH--HHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHH
T ss_pred             hhhCCHHHH--HHHHHHHHHHcCCCEEEEeCCccc-----cCHHHHH
Confidence            344554433  446699999999999999999999     9987653

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.38  E-value=4.4e-07  Score=65.66  Aligned_cols=40  Identities=20%  Similarity=0.286  Sum_probs=31.2

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|...+  .-.|++++..+|+++++|||+.+     +|...++
T Consensus       137 ~~~LSgGq~q--rv~lAraL~~~p~lllLDEPts~-----LD~~~~~  176 (240)
T 1ji0_A          137 GGTLSGGEQQ--MLAIGRALMSRPKLLMMDEPSLG-----LAPILVS  176 (240)
T ss_dssp             SSSSCHHHHH--HHHHHHHHTTCCSEEEEECTTTT-----CCHHHHH
T ss_pred             hhhCCHHHHH--HHHHHHHHHcCCCEEEEcCCccc-----CCHHHHH
Confidence            3445544334  46699999999999999999999     9987653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.38  E-value=8.5e-07  Score=67.81  Aligned_cols=39  Identities=18%  Similarity=0.245  Sum_probs=31.1

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .+.++|..  .-.-.|++++..+|+++++|||+.+     +|....
T Consensus       131 ~~~LSGGq--~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r  169 (362)
T 2it1_A          131 PWQLSGGQ--QQRVAIARALVKEPEVLLLDEPLSN-----LDALLR  169 (362)
T ss_dssp             GGGSCHHH--HHHHHHHHHHTTCCSEEEEESGGGG-----SCHHHH
T ss_pred             hhhCCHHH--HHHHHHHHHHHcCCCEEEEECcccc-----CCHHHH
Confidence            34555543  4456799999999999999999999     998765

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.38  E-value=4.8e-07  Score=70.69  Aligned_cols=91  Identities=12%  Similarity=0.030  Sum_probs=54.3

Q ss_pred             EEEEEEEeCCCccc--ccc-cc---cc--cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077           61 KIRFYCWDTAGQEK--FGG-LR---DG--YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (199)
Q Consensus        61 ~~~~~l~D~~g~~~--~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~  132 (199)
                      .+.+.++||+|...  ... ..   ..  .....+.+++|+|+.....   .......+...  -.+..+|.||.|....
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~--~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQA--SPIGSVIITKMDGTAK  253 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhcc--cCCcEEEEeccccccc
Confidence            56788999999543  111 11   11  1225689999999986533   22233333332  2456788999998743


Q ss_pred             cccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077          133 QVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (199)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      .  ..........+.++.+++.  |+++
T Consensus       254 ~--G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          254 G--GGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             H--HHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             c--hHHHHHHHHHCCCEEEEEC--CCCh
Confidence            2  2234555567888877775  6655

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.38  E-value=7.3e-07  Score=68.11  Aligned_cols=38  Identities=21%  Similarity=0.312  Sum_probs=30.6

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.++|.  +.-.-.|++++..+|+++++|||+.+     +|....
T Consensus       132 ~~LSgG--q~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r  169 (359)
T 2yyz_A          132 TQLSGG--QQQRVALARALVKQPKVLLFDEPLSN-----LDANLR  169 (359)
T ss_dssp             GGSCHH--HHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHH
T ss_pred             hhCCHH--HHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHH
Confidence            455554  34456799999999999999999999     998765

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.36  E-value=1.1e-06  Score=68.94  Aligned_cols=86  Identities=16%  Similarity=0.078  Sum_probs=50.3

Q ss_pred             cEEEEEEEeCCCcccccc-ccc-----ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCC-c-EEEEEeCCCCCC
Q 029077           60 GKIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-P-IVLCGNKVDVKN  131 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~-p-~iiv~~K~D~~~  131 (199)
                      ..+.+.++||+|...... ...     ..+..+|.+++|+|++...   ........+   .... | ..+|.||.|...
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~---~~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF---KEAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH---HTTSCSCEEEEEECSSSCS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH---hhcccCCeEEEEeCCCCcc
Confidence            346789999999654211 111     1123689999999987653   222222222   2345 6 778899999864


Q ss_pred             ccccHHHHHHHHHcCCcEEEec
Q 029077          132 RQVKAKQVTFHRKKNLQYYEIS  153 (199)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~s  153 (199)
                      ..  ..........+.++.+++
T Consensus       253 ~~--g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          253 KG--GGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             TT--HHHHHHHHHSSCCEEEEC
T ss_pred             ch--HHHHHHHHHHCCCEEEee
Confidence            32  223345566677765553

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.35  E-value=7.9e-07  Score=65.00  Aligned_cols=40  Identities=13%  Similarity=0.238  Sum_probs=31.1

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|..  .-.-.|++++..+|+++++|||+.+     +|...++
T Consensus       151 ~~~LSgGq--kQrv~iAraL~~~p~lllLDEPts~-----LD~~~~~  190 (257)
T 1g6h_A          151 AGELSGGQ--MKLVEIGRALMTNPKMIVMDEPIAG-----VAPGLAH  190 (257)
T ss_dssp             GGGSCHHH--HHHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHH
T ss_pred             chhCCHHH--HHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHH
Confidence            34455443  3446699999999999999999999     9987653

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.35  E-value=3.8e-07  Score=66.87  Aligned_cols=40  Identities=18%  Similarity=0.204  Sum_probs=31.0

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|..  .-.-.|++++..+|+++++|||+.+     +|...++
T Consensus       126 ~~~LSgGq--kqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~  165 (263)
T 2pjz_A          126 LYKLSAGQ--SVLVRTSLALASQPEIVGLDEPFEN-----VDAARRH  165 (263)
T ss_dssp             GGGSCHHH--HHHHHHHHHHHTCCSEEEEECTTTT-----CCHHHHH
T ss_pred             hhhCCHHH--HHHHHHHHHHHhCCCEEEEECCccc-----cCHHHHH
Confidence            34455443  3446699999999999999999999     9987653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.33  E-value=3.1e-07  Score=67.31  Aligned_cols=93  Identities=13%  Similarity=0.024  Sum_probs=62.3

Q ss_pred             CCCccc-ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCC
Q 029077           69 TAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL  147 (199)
Q Consensus        69 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~  147 (199)
                      .||+.. ........+.++|+++.|+|++++.+.....     +. .. ++|.++|+||+|+.+........++.+..+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~   76 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGK   76 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCC
Confidence            355432 1223455678999999999999887654311     01 11 8899999999999875433344455666678


Q ss_pred             cEEEeccCCCCChHHHHHHHHH
Q 029077          148 QYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus       148 ~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ++ .+|+.+|.|+++++..+..
T Consensus        77 ~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           77 RV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             CE-EECCTTSCHHHHHHHHCCC
T ss_pred             eE-EEECCCCcCHHHHHHHHHH
Confidence            88 9999999999988766544

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.32  E-value=2.6e-07  Score=70.31  Aligned_cols=39  Identities=26%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .+.++|..  .-.-.|++++..+|+++++|||+.+     +|....
T Consensus       125 ~~~LSgGq--~QRvalAraL~~~P~lLLLDEP~s~-----LD~~~~  163 (348)
T 3d31_A          125 PLTLSGGE--QQRVALARALVTNPKILLLDEPLSA-----LDPRTQ  163 (348)
T ss_dssp             GGGSCHHH--HHHHHHHHHTTSCCSEEEEESSSTT-----SCHHHH
T ss_pred             hhhCCHHH--HHHHHHHHHHHcCCCEEEEECcccc-----CCHHHH
Confidence            34555543  3456799999999999999999999     998764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.32  E-value=9.2e-08  Score=70.31  Aligned_cols=39  Identities=13%  Similarity=0.221  Sum_probs=30.8

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.++|...+  .-.|++++..+|+++++|||+.+     +|...++
T Consensus       137 ~~LSgGq~q--Rv~lAraL~~~p~lllLDEPts~-----LD~~~~~  175 (266)
T 2yz2_A          137 FFLSGGEKR--RVAIASVIVHEPDILILDEPLVG-----LDREGKT  175 (266)
T ss_dssp             GGSCHHHHH--HHHHHHHHTTCCSEEEEESTTTT-----CCHHHHH
T ss_pred             hhCCHHHHH--HHHHHHHHHcCCCEEEEcCcccc-----CCHHHHH
Confidence            455554444  46699999999999999999999     9987653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.32  E-value=1.1e-06  Score=67.14  Aligned_cols=39  Identities=26%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .+.++|..  .-.-.|++++..+|+++++|||+.+     +|....
T Consensus       138 ~~~LSGGq--~QRvalAraL~~~P~lLLLDEP~s~-----LD~~~r  176 (353)
T 1oxx_K          138 PRELSGAQ--QQRVALARALVKDPSLLLLDEPFSN-----LDARMR  176 (353)
T ss_dssp             GGGSCHHH--HHHHHHHHHHTTCCSEEEEESTTTT-----SCGGGH
T ss_pred             hhhCCHHH--HHHHHHHHHHHhCCCEEEEECCccc-----CCHHHH
Confidence            34555543  3456799999999999999999999     998764

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.29  E-value=8.4e-07  Score=71.88  Aligned_cols=65  Identities=15%  Similarity=0.016  Sum_probs=39.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEE--Ee-cCcEEEEEEEeCCCccc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDF--FT-NCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~D~~g~~~   74 (199)
                      ..+.++|+|+|.+|+|||||+|+|++.... .....+.+.+......  .. ......+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            456789999999999999999998765421 1111111222111111  11 12345788999999654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.21  E-value=1e-05  Score=58.41  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|...+
T Consensus       132 qkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~  163 (237)
T 2cbz_A          132 QKQRVSLARAVYSNADIYLFDDPLSA-----VDAHVG  163 (237)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEESTTTT-----SCHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCcccc-----cCHHHH
Confidence            33456799999999999999999999     998764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.20  E-value=9.9e-07  Score=64.20  Aligned_cols=37  Identities=14%  Similarity=0.103  Sum_probs=27.8

Q ss_pred             CCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       155 ~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ++|...+  .-.|++++..+|+++++|||+.+     +|...++
T Consensus       144 LSgGqkQ--rv~iAraL~~~p~lllLDEPts~-----LD~~~~~  180 (250)
T 2d2e_A          144 FSGGEKK--RNEILQLLVLEPTYAVLDETDSG-----LDIDALK  180 (250)
T ss_dssp             ----HHH--HHHHHHHHHHCCSEEEEECGGGT-----TCHHHHH
T ss_pred             CCHHHHH--HHHHHHHHHcCCCEEEEeCCCcC-----CCHHHHH
Confidence            5554444  45699999999999999999999     9987653

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.20  E-value=4.3e-06  Score=62.34  Aligned_cols=93  Identities=12%  Similarity=0.066  Sum_probs=56.1

Q ss_pred             cEEEEEEEeCCCccc--ccc-ccc-----ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCC
Q 029077           60 GKIRFYCWDTAGQEK--FGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVK  130 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~  130 (199)
                      ..+.+.++||||...  ... ...     .....+|.+++|+|+...   .........+..   ..+ ..+|.||.|..
T Consensus       179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGC
T ss_pred             CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCC
Confidence            356789999999755  211 111     123468999999998643   222222333322   456 66888999976


Q ss_pred             CccccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077          131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      ...  ..........+.++.+++  .|.++++
T Consensus       253 ~~~--g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          253 AKG--GGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             TTH--HHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             cch--HHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            432  223456677788877766  4555543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.19  E-value=2.6e-07  Score=69.09  Aligned_cols=32  Identities=22%  Similarity=0.401  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++..+|.++++|||+.+     +|....
T Consensus       195 qrQRvaiARAL~~~p~iLlLDEPts~-----LD~~~~  226 (306)
T 3nh6_A          195 EKQRVAIARTILKAPGIILLDEATSA-----LDTSNE  226 (306)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCSSC-----CCHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHH
Confidence            44557799999999999999999999     998764

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.19  E-value=6.1e-06  Score=62.36  Aligned_cols=91  Identities=14%  Similarity=0.067  Sum_probs=51.5

Q ss_pred             EEEEEEeCCCcccccccc-cc-----cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc
Q 029077           62 IRFYCWDTAGQEKFGGLR-DG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  135 (199)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~-~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~  135 (199)
                      +.+.+.|++|........ ..     ..-..|-.+++.|.....   .+......+...  .....++.||.|....  .
T Consensus       212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~--~~it~iilTKlD~~a~--~  284 (328)
T 3e70_C          212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA--VKIDGIILTKLDADAR--G  284 (328)
T ss_dssp             CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH--SCCCEEEEECGGGCSC--C
T ss_pred             chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh--cCCCEEEEeCcCCccc--h
Confidence            345678999864422221 11     112468888999976543   333333333322  2233677899997432  3


Q ss_pred             HHHHHHHHHcCCcEEEeccCCCCChH
Q 029077          136 AKQVTFHRKKNLQYYEISAKSNYNFE  161 (199)
Q Consensus       136 ~~~~~~~~~~~~~~~~~s~~~~~~v~  161 (199)
                      ..........+.++.+++  +|.+++
T Consensus       285 G~~l~~~~~~~~pi~~i~--~Ge~v~  308 (328)
T 3e70_C          285 GAALSISYVIDAPILFVG--VGQGYD  308 (328)
T ss_dssp             HHHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred             hHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            334566677788877776  566653

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.15  E-value=5.8e-06  Score=67.65  Aligned_cols=22  Identities=18%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~   36 (199)
                      .|+|+|++|||||||++.+.+-
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSC
T ss_pred             eEEEECCCCChHHHHHHHHhCC
Confidence            3999999999999999986643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.14  E-value=2e-06  Score=64.27  Aligned_cols=85  Identities=14%  Similarity=0.104  Sum_probs=58.8

Q ss_pred             cccccccccCCcEEEEEEeCCChhh-HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc----cHHHHHHHHHcCCcEE
Q 029077           76 GGLRDGYYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYY  150 (199)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~----~~~~~~~~~~~~~~~~  150 (199)
                      ..+.+..+.++|.+++|+|+.++.. ...+..++....  ..++|.++|+||+|+.+...    ..+........+.+++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~--~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE--ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH--TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            3444556889999999999987653 233333332222  24889999999999987533    2334456666788999


Q ss_pred             EeccCCCCChHH
Q 029077          151 EISAKSNYNFEK  162 (199)
Q Consensus       151 ~~s~~~~~~v~~  162 (199)
                      .+|+.+|.|+++
T Consensus       155 ~~sa~~~~g~~~  166 (307)
T 1t9h_A          155 LTSSKDQDSLAD  166 (307)
T ss_dssp             ECCHHHHTTCTT
T ss_pred             EEecCCCCCHHH
Confidence            999988887654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.12  E-value=4.4e-06  Score=68.06  Aligned_cols=33  Identities=18%  Similarity=0.338  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|....+
T Consensus       485 q~qr~~iAral~~~p~illlDEpts~-----LD~~~~~  517 (582)
T 3b5x_A          485 QRQRVAIARALLRDAPVLILDEATSA-----LDTESER  517 (582)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHH
Confidence            34456799999999999999999999     9987653

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.08  E-value=1.3e-07  Score=75.11  Aligned_cols=102  Identities=16%  Similarity=-0.027  Sum_probs=56.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc--ccccc--------c
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLR--------D   80 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~--------~   80 (199)
                      ...++|+++|.+||||||+.++|..... ....++.+...........+......+||..|.+.  .+..+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4567999999999999999998653211 11112222111111111111223345788887632  22222        3


Q ss_pred             ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhh
Q 029077           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV  114 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~  114 (199)
                      .++....+.++|+|.++. .......|...+...
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            345556788899999987 444455666655543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.06  E-value=2.1e-06  Score=70.03  Aligned_cols=40  Identities=15%  Similarity=0.349  Sum_probs=32.4

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ++.++|...+.  -.|++++..+|+++++|||+.+     +|..++.
T Consensus       469 ~~~LSGGe~QR--v~iAraL~~~p~lLlLDEPt~~-----LD~~~~~  508 (607)
T 3bk7_A          469 VEDLSGGELQR--VAIAATLLRDADIYLLDEPSAY-----LDVEQRL  508 (607)
T ss_dssp             GGGCCHHHHHH--HHHHHHHTSCCSEEEEECTTTT-----CCHHHHH
T ss_pred             hhhCCHHHHHH--HHHHHHHHhCCCEEEEeCCccC-----CCHHHHH
Confidence            45666655444  5699999999999999999999     9998754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.03  E-value=2.3e-05  Score=59.76  Aligned_cols=81  Identities=9%  Similarity=0.030  Sum_probs=54.6

Q ss_pred             cccCCcEEEEEEeCCChhh-HhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc---cHHHHHHHHHcCCcEEEeccCCC
Q 029077           82 YYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSN  157 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~  157 (199)
                      ...++|.+++|.+. ++.. ...+..++.....  .++|.++|+||+|+.+...   ..+........|++++.+|+.+|
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~  203 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ  203 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            46889999988664 4432 2333344332222  3788899999999986543   22234555667889999999999


Q ss_pred             CChHHHHH
Q 029077          158 YNFEKPFL  165 (199)
Q Consensus       158 ~~v~~~~~  165 (199)
                      .|++++..
T Consensus       204 ~gl~~L~~  211 (358)
T 2rcn_A          204 DGLKPLEE  211 (358)
T ss_dssp             BTHHHHHH
T ss_pred             cCHHHHHH
Confidence            99988654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.02  E-value=2.6e-06  Score=68.57  Aligned_cols=39  Identities=15%  Similarity=0.193  Sum_probs=31.0

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ++.++|.  +...-.|++++..+|+++++|||+.+     ||..++
T Consensus       136 ~~~LSgG--e~Qrv~iA~aL~~~p~illlDEPts~-----LD~~~~  174 (538)
T 3ozx_A          136 ANILSGG--GLQRLLVAASLLREADVYIFDQPSSY-----LDVRER  174 (538)
T ss_dssp             GGGCCHH--HHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHH
T ss_pred             hhhCCHH--HHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHH
Confidence            4455544  34456699999999999999999999     998765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.99  E-value=4.4e-06  Score=67.27  Aligned_cols=40  Identities=25%  Similarity=0.460  Sum_probs=32.4

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +..++|...+.  -+|++++..+|+++++|||+.+     +|..++.
T Consensus       383 ~~~LSGGq~QR--v~iAraL~~~p~lLlLDEPT~g-----LD~~~~~  422 (538)
T 3ozx_A          383 VNDLSGGELQK--LYIAATLAKEADLYVLDQPSSY-----LDVEERY  422 (538)
T ss_dssp             GGGCCHHHHHH--HHHHHHHHSCCSEEEEESTTTT-----CCHHHHH
T ss_pred             hhhCCHHHHHH--HHHHHHHHcCCCEEEEeCCccC-----CCHHHHH
Confidence            45666655554  6699999999999999999999     9987653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.96  E-value=5.1e-06  Score=67.78  Aligned_cols=39  Identities=10%  Similarity=0.246  Sum_probs=31.8

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ++.++|.+.+.  -.|++++..+|+++++|||+.+     +|..++
T Consensus       465 ~~~LSGGqkQR--v~iAraL~~~p~lLlLDEPT~g-----LD~~~~  503 (608)
T 3j16_B          465 VQHLSGGELQR--VAIVLALGIPADIYLIDEPSAY-----LDSEQR  503 (608)
T ss_dssp             SSSCCHHHHHH--HHHHHHTTSCCSEEEECCTTTT-----CCHHHH
T ss_pred             hhhCCHHHHHH--HHHHHHHHhCCCEEEEECCCCC-----CCHHHH
Confidence            45666655554  5699999999999999999999     998765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.89  E-value=3.1e-06  Score=68.21  Aligned_cols=40  Identities=15%  Similarity=0.357  Sum_probs=32.3

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +..++|.+.+.  -.|++++..+|+++++|||+.+     +|..+++
T Consensus       399 ~~~LSGGe~qr--v~lAraL~~~p~lLlLDEPt~~-----LD~~~~~  438 (538)
T 1yqt_A          399 VNELSGGELQR--VAIAATLLRDADIYLLDEPSAY-----LDVEQRL  438 (538)
T ss_dssp             GGGCCHHHHHH--HHHHHHHTSCCSEEEEECTTTT-----CCHHHHH
T ss_pred             hhhCCHHHHHH--HHHHHHHHhCCCEEEEeCCccc-----CCHHHHH
Confidence            45566655454  5699999999999999999999     9988754

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.87  E-value=8.1e-06  Score=56.25  Aligned_cols=21  Identities=48%  Similarity=0.868  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      .+++++|++|||||||++.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~   21 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIV   21 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            378999999999999999865

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.86  E-value=3e-06  Score=58.74  Aligned_cols=21  Identities=43%  Similarity=0.762  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029077           16 LVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~~   36 (199)
                      |+|+||+|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999997643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.86  E-value=7.6e-06  Score=66.87  Aligned_cols=32  Identities=13%  Similarity=0.429  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|....
T Consensus       496 q~Qrv~iAral~~~p~illlDEpts~-----LD~~~~  527 (598)
T 3qf4_B          496 QRQLLAITRAFLANPKILILDEATSN-----VDTKTE  527 (598)
T ss_dssp             HHHHHHHHHHHHTCCSEEEECCCCTT-----CCHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHH
Confidence            44557799999999999999999999     998764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.85  E-value=1.5e-05  Score=64.95  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|....
T Consensus       484 qrQrv~lARal~~~p~illlDEpts~-----LD~~~~  515 (587)
T 3qf4_A          484 QKQRLSIARALVKKPKVLILDDCTSS-----VDPITE  515 (587)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEESCCTT-----SCHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHH
Confidence            45567799999999999999999999     998764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.81  E-value=1.7e-05  Score=70.36  Aligned_cols=31  Identities=23%  Similarity=0.446  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA  196 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~  196 (199)
                      +.-.-.|+|++..+++++.+|||+.+     +|.+.
T Consensus      1222 QrQriaiARAllr~~~ILiLDEaTSa-----LD~~t 1252 (1321)
T 4f4c_A         1222 QKQRIAIARALVRNPKILLLDEATSA-----LDTES 1252 (1321)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEESCCCS-----TTSHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCcccc-----CCHHH
Confidence            45567899999999999999999999     98765

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.80  E-value=3e-05  Score=63.08  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|....
T Consensus       482 q~Qrv~lAral~~~p~illlDEpts~-----LD~~~~  513 (578)
T 4a82_A          482 QKQRLSIARIFLNNPPILILDEATSA-----LDLESE  513 (578)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHH
Confidence            45567799999999999999999999     998754

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.79  E-value=2.4e-05  Score=64.77  Aligned_cols=40  Identities=15%  Similarity=0.233  Sum_probs=31.2

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCC--CceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPN--LHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~--~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ++.++|.  +.-.-.|++++..+|+  ++++|||+.+     +|+..+.
T Consensus       200 ~~~LSGG--e~QRv~iArAL~~~p~~~lLlLDEPtsg-----LD~~~~~  241 (670)
T 3ux8_A          200 AGTLSGG--EAQRIRLATQIGSRLTGVLYVLDEPSIG-----LHQRDND  241 (670)
T ss_dssp             GGGSCHH--HHHHHHHHHHHHTCCCSCEEEEECTTTT-----CCGGGHH
T ss_pred             cccCCHH--HHHHHHHHHHHhhCCCCCEEEEECCccC-----CCHHHHH
Confidence            4556554  4445669999999988  9999999999     9987653

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.72  E-value=5.8e-05  Score=59.24  Aligned_cols=65  Identities=20%  Similarity=0.205  Sum_probs=40.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcC------------------CCCC---ccccceeEEEeeEEE--Ee-cCcEEEEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTG------------------EFEK---KYEPTIGVEVHPLDF--FT-NCGKIRFY   65 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~------------------~~~~---~~~~~~~~~~~~~~~--~~-~~~~~~~~   65 (199)
                      ..+..-|+|+|++++|||||+|.|++.                  .+..   ....|.|+-......  .. ++....+.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv  143 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEE
Confidence            456678999999999999999998742                  1211   112234432222111  11 34468899


Q ss_pred             EEeCCCccc
Q 029077           66 CWDTAGQEK   74 (199)
Q Consensus        66 l~D~~g~~~   74 (199)
                      +.||+|...
T Consensus       144 llDTeG~~~  152 (447)
T 3q5d_A          144 LMDTQGTFD  152 (447)
T ss_dssp             EEEEECCCS
T ss_pred             EEcCCcccc
Confidence            999999643

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.70  E-value=2e-05  Score=54.23  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      -.++++|++|||||||++.+..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998664

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.69  E-value=2.2e-05  Score=54.98  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      -.++|+|++|||||||++.+..
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998653

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.68  E-value=2e-05  Score=53.87  Aligned_cols=33  Identities=15%  Similarity=0.138  Sum_probs=27.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHh
Q 029077          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA  195 (199)
Q Consensus       158 ~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~  195 (199)
                      .+.+.-+-.|++++..+|.++++|||+..     +|..
T Consensus        85 s~g~~qrv~iAral~~~p~~lllDEPt~~-----Ld~~  117 (171)
T 4gp7_A           85 ESARKPLIEMAKDYHCFPVAVVFNLPEKV-----CQER  117 (171)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECCCHHH-----HHHH
T ss_pred             HHHHHHHHHHHHHcCCcEEEEEEeCCHHH-----HHHH
Confidence            34456667899999999999999999998     8876

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.68  E-value=3.6e-05  Score=68.05  Aligned_cols=32  Identities=22%  Similarity=0.441  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|....
T Consensus      1176 q~Qrv~iARal~~~p~iLiLDEpTs~-----lD~~~~ 1207 (1284)
T 3g5u_A         1176 QKQRIAIARALVRQPHILLLDEATSA-----LDTESE 1207 (1284)
T ss_dssp             HHHHHHHHHHHHHCCSSEEEESCSSS-----CCHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHH
Confidence            44556799999999999999999999     998764

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.66  E-value=1.5e-05  Score=55.75  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      +.--|+|+|++|||||||++.|+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHh
Confidence            444688999999999999999764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.64  E-value=2.6e-05  Score=54.92  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      -++++|++|||||||++.+.+
T Consensus        22 i~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999998653

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.63  E-value=7.8e-05  Score=54.06  Aligned_cols=33  Identities=18%  Similarity=0.443  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|...++
T Consensus       150 q~qRv~iAraL~~~p~lllLDEPts~-----LD~~~~~  182 (247)
T 2ff7_A          150 QRQRIAIARALVNNPKILIFDEATSA-----LDYESEH  182 (247)
T ss_dssp             HHHHHHHHHHHTTCCSEEEECCCCSC-----CCHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHH
Confidence            44456799999999999999999999     9987653

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.62  E-value=2.8e-05  Score=54.42  Aligned_cols=21  Identities=29%  Similarity=0.551  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      -++++|++|||||||++.+..
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            589999999999999998654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.61  E-value=0.00016  Score=64.12  Aligned_cols=32  Identities=22%  Similarity=0.450  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +...-.|++++..+|.++.+|||+.+     +|....
T Consensus       531 q~QriaiARal~~~p~iliLDEpts~-----LD~~~~  562 (1284)
T 3g5u_A          531 QKQRIAIARALVRNPKILLLDEATSA-----LDTESE  562 (1284)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEESTTCS-----SCHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCC-----CCHHHH
Confidence            55667899999999999999999999     997653

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.60  E-value=3.3e-05  Score=55.00  Aligned_cols=21  Identities=19%  Similarity=0.501  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      -++|+|++|||||||++.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999998664

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.59  E-value=3.5e-05  Score=51.95  Aligned_cols=21  Identities=38%  Similarity=0.559  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      .++++|++|||||||++.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998664

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.58  E-value=3.6e-05  Score=53.26  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      -.|+++|++|||||||++.+..
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.58  E-value=9.9e-05  Score=54.27  Aligned_cols=39  Identities=26%  Similarity=0.320  Sum_probs=30.4

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.++|.  +.-.-.|++++..+|+++++|||+.+     +|...++
T Consensus       155 ~~LSgG--q~QRv~lAraL~~~p~lllLDEPts~-----LD~~~~~  193 (271)
T 2ixe_A          155 NQLSGG--QRQAVALARALIRKPRLLILDNATSA-----LDAGNQL  193 (271)
T ss_dssp             TTSCHH--HHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHH
T ss_pred             CCCCHH--HHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHH
Confidence            344443  33446699999999999999999999     9987653

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.58  E-value=3.6e-05  Score=54.74  Aligned_cols=21  Identities=48%  Similarity=0.770  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      .++|+|++|||||||++.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999998664

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.57  E-value=4.9e-05  Score=53.52  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=20.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .+...|+|+|++|||||||++.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~   43 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLA   43 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999855

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.55  E-value=8.9e-05  Score=65.79  Aligned_cols=31  Identities=23%  Similarity=0.447  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAA  196 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~  196 (199)
                      +...-.|+|+++.++.++.+|||+.+     +|...
T Consensus       559 QkQRiaiARAl~~~~~IliLDE~tSa-----LD~~t  589 (1321)
T 4f4c_A          559 QKQRIAIARALVRNPKILLLDEATSA-----LDAES  589 (1321)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTT-----SCTTT
T ss_pred             HHHHHHHHHHHccCCCEEEEeccccc-----CCHHH
Confidence            56678899999999999999999999     88654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.55  E-value=6.8e-05  Score=53.72  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|...++
T Consensus       135 qkqrv~lAral~~~p~lllLDEPts~-----LD~~~~~  167 (229)
T 2pze_A          135 QRARISLARAVYKDADLYLLDSPFGY-----LDVLTEK  167 (229)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEESTTTT-----SCHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEECcccC-----CCHHHHH
Confidence            44456799999999999999999999     9987653

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.55  E-value=0.00053  Score=53.74  Aligned_cols=83  Identities=14%  Similarity=0.126  Sum_probs=46.2

Q ss_pred             EEEEEEEeCCCcccccc-cccc-----cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcE-EEEEeCCCCCCcc
Q 029077           61 KIRFYCWDTAGQEKFGG-LRDG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQ  133 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~-~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~-iiv~~K~D~~~~~  133 (199)
                      .+.+.++||||...... ....     ....++.+++|+|+....   ........+..   ..++ -+|.||.|.....
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~---~l~i~gvVlnK~D~~~~~  256 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNE---ALPLTGVVLTKVDGDARG  256 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHH---HSCCCCEEEECTTSSSCC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhc---cCCCeEEEEecCCCCccH
Confidence            56889999999644321 1111     134688999999987543   22222333322   3443 3678999986443


Q ss_pred             ccHHHHHHHHHcCCcEEE
Q 029077          134 VKAKQVTFHRKKNLQYYE  151 (199)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~  151 (199)
                        ..........+.++.+
T Consensus       257 --g~~l~i~~~~~~Pi~~  272 (433)
T 2xxa_A          257 --GAALSIRHITGKPIKF  272 (433)
T ss_dssp             --THHHHHHHHHCCCEEE
T ss_pred             --HHHHHHHHHHCCCeEE
Confidence              2233444445555333

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.53  E-value=5.8e-05  Score=54.59  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...|+|+|++|||||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999999865

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.51  E-value=7.2e-05  Score=54.09  Aligned_cols=32  Identities=16%  Similarity=0.406  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|...+
T Consensus       144 q~qrv~lAral~~~p~lllLDEPts~-----LD~~~~  175 (243)
T 1mv5_A          144 QRQRLAIARAFLRNPKILMLDEATAS-----LDSESE  175 (243)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCSCS-----SCSSSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHH
Confidence            44456799999999999999999999     987654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.49  E-value=2.9e-05  Score=58.03  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      -.++++|++|||||||+|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHhcc
Confidence            4789999999999999999653

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.49  E-value=6e-05  Score=53.14  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~   36 (199)
                      --|+++|++|||||||++.|...
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            45889999999999999997643

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.45  E-value=9.9e-05  Score=51.58  Aligned_cols=27  Identities=19%  Similarity=0.307  Sum_probs=22.2

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHh
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ......+.|+|+|.+||||||+.+.|.
T Consensus        15 ~~~~~~~~I~l~G~~GsGKST~a~~La   41 (201)
T 2cdn_A           15 VPRGSHMRVLLLGPPGAGKGTQAVKLA   41 (201)
T ss_dssp             -CCCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            344566789999999999999999865

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.45  E-value=5.9e-05  Score=53.23  Aligned_cols=21  Identities=24%  Similarity=0.343  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      .++++|++|||||||++.+.+
T Consensus        24 ~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999998653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.45  E-value=8.1e-05  Score=52.39  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~   35 (199)
                      ...|+++|++|||||||++.+..
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999997653

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.45  E-value=7.5e-05  Score=54.19  Aligned_cols=40  Identities=20%  Similarity=0.226  Sum_probs=30.8

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCC-------CceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPN-------LHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~-------~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++|...+  .-.|++++..+|+       ++++|||+.+     +|...++
T Consensus       124 ~~~LSgGq~q--rv~lAraL~~~p~~~~~~~~lllLDEPts~-----LD~~~~~  170 (249)
T 2qi9_C          124 TNQLSGGEWQ--RVRLAAVVLQITPQANPAGQLLLLDEPMNS-----LDVAQQS  170 (249)
T ss_dssp             GGGCCHHHHH--HHHHHHHHHHHCTTTCTTCCEEEESSTTTT-----CCHHHHH
T ss_pred             hhhCCHHHHH--HHHHHHHHHcCCCcCCCCCeEEEEECCccc-----CCHHHHH
Confidence            3445544334  4569999999999       9999999999     9987654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.44  E-value=7.4e-05  Score=51.66  Aligned_cols=20  Identities=40%  Similarity=0.574  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .++++|++|||||||++.+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~   23 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLA   23 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            47899999999999999865

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.43  E-value=6.9e-05  Score=52.06  Aligned_cols=21  Identities=29%  Similarity=0.578  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      +++++|++|||||||++.+..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            589999999999999998653

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.42  E-value=8.7e-05  Score=54.44  Aligned_cols=33  Identities=18%  Similarity=0.242  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|...++
T Consensus       169 q~QRv~iAraL~~~p~lLlLDEPts~-----LD~~~~~  201 (267)
T 2zu0_C          169 EKKRNDILQMAVLEPELCILDESDSG-----LDIDALK  201 (267)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHH
Confidence            34456799999999999999999999     9987653

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.41  E-value=8.5e-05  Score=54.26  Aligned_cols=33  Identities=21%  Similarity=0.362  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|....+
T Consensus       160 qkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~  192 (260)
T 2ghi_A          160 ERQRIAIARCLLKDPKIVIFDEATSS-----LDSKTEY  192 (260)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCCCT-----TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHH
Confidence            44456799999999999999999999     9987653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.41  E-value=8.9e-05  Score=50.41  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      ..|+++|++||||||+++.|.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La   25 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLA   25 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            369999999999999999865

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.38  E-value=0.00012  Score=51.17  Aligned_cols=23  Identities=35%  Similarity=0.549  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~   36 (199)
                      ..|+++|++||||||+++.+...
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999986643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.38  E-value=0.00011  Score=49.85  Aligned_cols=20  Identities=35%  Similarity=0.519  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHH
Q 029077           14 FKLVIVGDGGTGKTTFVKRH   33 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l   33 (199)
                      ..|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999986

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.37  E-value=0.0001  Score=51.52  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.|+|+|++||||||+++.+.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~   50 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVA   50 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999865

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.37  E-value=0.0001  Score=51.68  Aligned_cols=22  Identities=41%  Similarity=0.677  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      .-|+|+|++|||||||++.|..
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3578899999999999998763

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.35  E-value=0.00012  Score=51.22  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...|+|+|.+||||||+++.|.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~   39 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIA   39 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3479999999999999999865

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.35  E-value=0.00012  Score=55.92  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~   36 (199)
                      .++++|++|||||||+|.|...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcc
Confidence            6899999999999999997643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.35  E-value=0.00013  Score=50.33  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...|+|.|.+||||||+++.|.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~   24 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAM   24 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999865

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.35  E-value=0.0001  Score=53.85  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.++|+|++|||||||++.+.
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~   46 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMI   46 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHH
Confidence            468999999999999999865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.34  E-value=0.00013  Score=54.06  Aligned_cols=39  Identities=23%  Similarity=0.241  Sum_probs=30.4

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..++|...+  .-.|++++..+|+++++|||+.+     +|...++
T Consensus       158 ~~LSgGq~Q--Rv~lAraL~~~p~lllLDEPts~-----LD~~~~~  196 (290)
T 2bbs_A          158 ITLSGGQRA--RISLARAVYKDADLYLLDSPFGY-----LDVLTEK  196 (290)
T ss_dssp             CCCCHHHHH--HHHHHHHHHSCCSEEEEESTTTT-----CCHHHHH
T ss_pred             CcCCHHHHH--HHHHHHHHHCCCCEEEEECCccc-----CCHHHHH
Confidence            344444333  46699999999999999999999     9987653

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.34  E-value=0.00011  Score=54.77  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      =.++|+|++|||||||++.+.
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~  147 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLI  147 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHh
Confidence            368999999999999999865

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.33  E-value=0.00015  Score=49.43  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      ..|++.|.+||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998653

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.33  E-value=0.00013  Score=49.37  Aligned_cols=20  Identities=15%  Similarity=0.147  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .|+|.|++||||||+.+.|.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~   22 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLS   22 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.33  E-value=0.00015  Score=50.13  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +...|++.|.+||||||+.+.|.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999999865

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.32  E-value=0.00019  Score=48.92  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      --.|+++|++||||||+++.+.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~   29 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVA   29 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHH
Confidence            3579999999999999999865

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.32  E-value=0.00013  Score=51.50  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      ++|+|.|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.30  E-value=0.0024  Score=44.86  Aligned_cols=86  Identities=10%  Similarity=-0.004  Sum_probs=53.9

Q ss_pred             cEEEEEEEeCCCc-ccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC-ccccHH
Q 029077           60 GKIRFYCWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK  137 (199)
Q Consensus        60 ~~~~~~l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~-~~~~~~  137 (199)
                      ..+.+.++|+|+. ..  ......+..+|.+|++...+ ..+...+...+..+.... +.++.+|.|+.|... .. ..+
T Consensus        66 ~~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~-~~~  140 (209)
T 3cwq_A           66 PKYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKD-GDE  140 (209)
T ss_dssp             GGCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCH-HHH
T ss_pred             hcCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchH-HHH
Confidence            3467889999875 32  23445667899998888764 445555666666665532 566888999998765 22 233


Q ss_pred             HHHHHHHcCCcEE
Q 029077          138 QVTFHRKKNLQYY  150 (199)
Q Consensus       138 ~~~~~~~~~~~~~  150 (199)
                      ..+..+..+.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            3344444555443

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.30  E-value=7.6e-05  Score=53.42  Aligned_cols=20  Identities=40%  Similarity=0.566  Sum_probs=14.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -++|+|++|||||||++.+.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             EEEEECSCC----CHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999866

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.30  E-value=0.00017  Score=49.21  Aligned_cols=22  Identities=23%  Similarity=0.538  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999998764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.30  E-value=0.00015  Score=51.24  Aligned_cols=21  Identities=38%  Similarity=0.528  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      ++|+|+|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.30  E-value=0.00015  Score=50.75  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      .+|+|+|.+||||||+++.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999998654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.29  E-value=8.4e-05  Score=51.98  Aligned_cols=85  Identities=7%  Similarity=-0.043  Sum_probs=53.5

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhh---cCCCcEEEEEeCCCCCCccccHH
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAK  137 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~---~~~~p~iiv~~K~D~~~~~~~~~  137 (199)
                      .+.+.++|+|+..  .......+..+|.++++...+...  ..+......+...   .++.++.+|.|+.|.... ...+
T Consensus        75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~  149 (206)
T 4dzz_A           75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNV  149 (206)
T ss_dssp             TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHH
T ss_pred             CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHH
Confidence            4788999999754  334455667799999998876543  4455555555443   345677889999986543 2233


Q ss_pred             HHHHHHHcCCcEE
Q 029077          138 QVTFHRKKNLQYY  150 (199)
Q Consensus       138 ~~~~~~~~~~~~~  150 (199)
                      ..+..+..+.+++
T Consensus       150 ~~~~l~~~~~~vl  162 (206)
T 4dzz_A          150 LKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHTCCBC
T ss_pred             HHHHHHHcCCcee
Confidence            3444444555544

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.29  E-value=0.00023  Score=49.05  Aligned_cols=26  Identities=27%  Similarity=0.275  Sum_probs=21.6

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHh
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..++...|+++|.+||||||+++.+.
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~   34 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLA   34 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHH
Confidence            33456789999999999999999865

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.29  E-value=0.00019  Score=50.07  Aligned_cols=27  Identities=22%  Similarity=0.231  Sum_probs=21.9

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhc
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      ++++...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~~~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            4 EAKHPIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             --CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHH
Confidence            345568899999999999999998664

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.28  E-value=0.00019  Score=51.02  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      .+|+++|++||||||+++.|.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~   26 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMA   26 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999765

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.28  E-value=0.00018  Score=53.95  Aligned_cols=25  Identities=20%  Similarity=0.215  Sum_probs=21.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ......|+|+|++|||||||++.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~  111 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQ  111 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHH
Confidence            3456789999999999999999855

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.27  E-value=0.00019  Score=51.86  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      +...|+|+|++|||||||++.+..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.27  E-value=0.00021  Score=50.09  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +...|+|.|.+||||||+++.|.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~   25 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLK   25 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Confidence            45689999999999999999865

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.27  E-value=0.00026  Score=53.28  Aligned_cols=25  Identities=20%  Similarity=0.189  Sum_probs=21.5

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ....+-|+|+|++|||||||++.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            4566889999999999999998754

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.27  E-value=0.00018  Score=50.28  Aligned_cols=21  Identities=33%  Similarity=0.490  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.|+++|++||||||+.+.|.
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La   46 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFA   46 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHH
Confidence            379999999999999999865

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.26  E-value=0.00016  Score=50.51  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +.-.|+++|++||||||+++.+.
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La   46 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALN   46 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999865

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.25  E-value=0.00015  Score=51.49  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      -++++|++|||||||++.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.24  E-value=0.00019  Score=50.30  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      +.|+++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998653

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.24  E-value=0.00023  Score=48.96  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...|+++|.+||||||+.+.|.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999865

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.24  E-value=0.00016  Score=53.95  Aligned_cols=21  Identities=29%  Similarity=0.627  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.++++|++|||||||+|.+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999976

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.23  E-value=0.00014  Score=49.82  Aligned_cols=21  Identities=38%  Similarity=0.502  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.++++|++|+|||||++.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~   59 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATL   59 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999865

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.23  E-value=0.00025  Score=48.89  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      +..+|+++|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.22  E-value=0.00021  Score=50.34  Aligned_cols=21  Identities=43%  Similarity=0.552  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      ++|+++|+|||||+|...+|.
T Consensus         1 M~Iil~GpPGsGKgTqa~~La   21 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLA   21 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999865

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.22  E-value=0.00015  Score=55.63  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      .-+++|+|++|||||||++.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~  191 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLA  191 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999855

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.21  E-value=0.00025  Score=49.00  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...|++.|.+||||||+.+.|.
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~   26 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALA   26 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999865

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.21  E-value=0.00026  Score=51.08  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +.++|+|+|++||||||+.+.|.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            56799999999999999999865

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.20  E-value=0.00021  Score=48.90  Aligned_cols=22  Identities=36%  Similarity=0.450  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      ..++++|++|||||||+++++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3688999999999999999763

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.20  E-value=0.00022  Score=49.65  Aligned_cols=20  Identities=35%  Similarity=0.504  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .|+|.|.+||||||+++.|.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~   21 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEIS   21 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHH
Confidence            68999999999999999865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.19  E-value=0.00024  Score=48.82  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...|+++|++||||||+.+.|.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3479999999999999999865

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.19  E-value=0.00037  Score=48.67  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=20.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .....|+|.|.+||||||+.+.|.
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            334579999999999999999865

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.19  E-value=0.00018  Score=53.65  Aligned_cols=21  Identities=19%  Similarity=0.314  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      .++++|++|||||||+|.+.+
T Consensus       171 iv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHST
T ss_pred             eEEEECCCCCcHHHHHHHhcc
Confidence            678999999999999998653

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.18  E-value=0.00026  Score=48.46  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=20.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +....|+++|.+||||||+.+.|.
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHH
Confidence            344579999999999999999865

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.17  E-value=0.00011  Score=50.27  Aligned_cols=20  Identities=45%  Similarity=0.718  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .++|+|++|||||||++.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~   23 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMM   23 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.16  E-value=0.00032  Score=50.95  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +...|+|+|++||||||+++.+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999865

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.16  E-value=0.00024  Score=50.16  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      ++|+|.|.+||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIM   21 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999865

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.16  E-value=0.00026  Score=48.79  Aligned_cols=20  Identities=25%  Similarity=0.358  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .|+|.|.+||||||+++.|.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~   22 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999865

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.15  E-value=0.00037  Score=48.84  Aligned_cols=25  Identities=32%  Similarity=0.373  Sum_probs=21.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      .+...|+++|++||||||+++.|..
T Consensus        19 ~~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           19 SKTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999998653

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.14  E-value=0.00031  Score=49.75  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..+|+|+|.+||||||+.+.|.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La   25 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999865

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.13  E-value=0.00037  Score=48.91  Aligned_cols=23  Identities=26%  Similarity=0.187  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +...|+|.|.+||||||+.+.|.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~   31 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLV   31 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHH
Confidence            35689999999999999999865

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.13  E-value=0.00035  Score=51.78  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +...-|++.|++||||||+++.|.
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~   54 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIF   54 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999999999975

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.12  E-value=0.00041  Score=51.49  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=21.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..+...|+|.|++|||||||++.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3456789999999999999998754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.11  E-value=0.00057  Score=55.69  Aligned_cols=33  Identities=18%  Similarity=0.359  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|++++..+|+++++|||+.+     +|....+
T Consensus       485 q~qrl~iAral~~~p~illlDEpts~-----LD~~~~~  517 (582)
T 3b60_A          485 QRQRIAIARALLRDSPILILDEATSA-----LDTESER  517 (582)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEETTTSS-----CCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEECcccc-----CCHHHHH
Confidence            44456799999999999999999999     9987653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.10  E-value=0.00027  Score=53.95  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.|+|+|++|||||||++.++
T Consensus       124 g~i~I~GptGSGKTTlL~~l~  144 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAML  144 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999865

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.10  E-value=0.00026  Score=48.23  Aligned_cols=20  Identities=30%  Similarity=0.546  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      +|+++|++||||||+.+.|.
T Consensus         6 ~i~i~G~~GsGKsTla~~La   25 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALA   25 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            69999999999999999864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.10  E-value=0.00037  Score=52.14  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=21.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      .....|+|+|++|||||||++.+..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3446899999999999999998653

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.09  E-value=0.00038  Score=48.53  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~   35 (199)
                      ...|+|.|.+||||||+++.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999998653

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.09  E-value=0.00034  Score=47.23  Aligned_cols=21  Identities=19%  Similarity=0.232  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      ++|++.|.+||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLS   21 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999865

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.08  E-value=0.00038  Score=48.16  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +...|++.|.+||||||+.+.|.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            34589999999999999999865

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.08  E-value=0.00028  Score=52.74  Aligned_cols=84  Identities=10%  Similarity=0.017  Sum_probs=44.7

Q ss_pred             EEEEEeCCCccccccc-c-----------cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077           63 RFYCWDTAGQEKFGGL-R-----------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (199)
Q Consensus        63 ~~~l~D~~g~~~~~~~-~-----------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~  130 (199)
                      .+.+.|++|....... .           +......+.++++.|......   +......+.... +. .+++.||.|..
T Consensus       186 d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~-~~-t~iivTh~d~~  260 (304)
T 1rj9_A          186 DLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV-GL-TGVIVTKLDGT  260 (304)
T ss_dssp             SEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH-CC-SEEEEECTTSS
T ss_pred             CEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc-CC-cEEEEECCccc
Confidence            4567899885432111 0           122345777888999876543   222233332221 22 45678998865


Q ss_pred             CccccHHHHHHHHHcCCcEEEec
Q 029077          131 NRQVKAKQVTFHRKKNLQYYEIS  153 (199)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~s  153 (199)
                      ..  ...........+.++.++.
T Consensus       261 a~--gg~~l~i~~~~~~pi~~ig  281 (304)
T 1rj9_A          261 AK--GGVLIPIVRTLKVPIKFVG  281 (304)
T ss_dssp             CC--CTTHHHHHHHHCCCEEEEE
T ss_pred             cc--ccHHHHHHHHHCCCeEEEe
Confidence            32  2233455556677766654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.08  E-value=0.00028  Score=52.66  Aligned_cols=23  Identities=35%  Similarity=0.433  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~   35 (199)
                      .-.++++|++||||||+++.+..
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34789999999999999998653

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.08  E-value=0.00022  Score=47.46  Aligned_cols=21  Identities=19%  Similarity=0.457  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.++++|++|+|||||++.+.
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~   57 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWV   57 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            368899999999999999865

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.08  E-value=0.00034  Score=49.83  Aligned_cols=21  Identities=38%  Similarity=0.586  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      ..|+|+|.+||||||+++.|.
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999865

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.07  E-value=0.00041  Score=48.47  Aligned_cols=23  Identities=30%  Similarity=0.277  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ....|+++|++||||||+++.+.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~   43 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLS   43 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            44689999999999999999865

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.06  E-value=0.00029  Score=54.43  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++..+|+++++|||+.+     ||...+
T Consensus       160 qrQRvalARAL~~~P~lLLLDEPts~-----LD~~~~  191 (390)
T 3gd7_A          160 HKQLMCLARSVLSKAKILLLDEPSAH-----LDPVTY  191 (390)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESHHHH-----SCHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHH
Confidence            44567799999999999999999999     987654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.05  E-value=0.00031  Score=51.70  Aligned_cols=20  Identities=30%  Similarity=0.499  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029077           16 LVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~   35 (199)
                      ++++|++|+|||||++.+..
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999998653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.05  E-value=0.00041  Score=50.29  Aligned_cols=25  Identities=16%  Similarity=0.332  Sum_probs=20.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      .+.+.|+|.|.+||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.04  E-value=0.00035  Score=47.86  Aligned_cols=20  Identities=35%  Similarity=0.483  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -.+|+|++|||||||++.+.
T Consensus        28 ~~~i~G~NGsGKStll~ai~   47 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAIL   47 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.03  E-value=0.0004  Score=49.38  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      +.|+|.|.+||||||+++.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            369999999999999999865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.03  E-value=0.00037  Score=49.42  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      ..|+|+|++||||||+.+.|.
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999865

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.03  E-value=0.00027  Score=48.37  Aligned_cols=23  Identities=30%  Similarity=0.164  Sum_probs=15.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +...|++.|.+||||||+.+.|.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999865

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.03  E-value=0.00032  Score=53.03  Aligned_cols=20  Identities=35%  Similarity=0.818  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .++++|++|||||||++.+.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~  192 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIM  192 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999999855

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.02  E-value=0.00042  Score=49.67  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +..+.|++.|++||||||+.+.+.
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.01  E-value=0.00034  Score=53.57  Aligned_cols=21  Identities=38%  Similarity=0.678  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.++|+|++|||||||++.+.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~  196 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALM  196 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999865

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.00  E-value=0.0005  Score=48.30  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...|+|.|.+||||||+++.|.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~   30 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLV   30 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999865

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.99  E-value=0.00084  Score=49.55  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...+.|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999865

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.99  E-value=0.00055  Score=49.00  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...+|+|+|.+||||||+.+.|.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La   37 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLA   37 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999865

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.00032  Score=55.46  Aligned_cols=21  Identities=38%  Similarity=0.624  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      +++|+|++|||||||++.+.+
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~G  160 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCS  160 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999998653

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.98  E-value=0.00055  Score=48.92  Aligned_cols=24  Identities=33%  Similarity=0.607  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .+-.-|+|.|+.||||||+++.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~   41 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFE   41 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            445689999999999999999754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.98  E-value=0.00041  Score=53.36  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      .-.|+|+|++||||||+++.+.
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~  157 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMI  157 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3469999999999999999866

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.98  E-value=0.00043  Score=50.27  Aligned_cols=20  Identities=25%  Similarity=0.252  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -|+|+|++|||||||.+.|.
T Consensus         3 li~I~G~~GSGKSTla~~La   22 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIA   22 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            47899999999999999865

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=96.96  E-value=0.0086  Score=43.54  Aligned_cols=65  Identities=12%  Similarity=0.103  Sum_probs=45.3

Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCC
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD  128 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D  128 (199)
                      .+.+.++|+|+..  .......+..+|.+|++...+. .+...+......+.....+.++.+|.|+.+
T Consensus       144 ~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~  208 (267)
T 3k9g_A          144 KYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKLNLFLPIFLIITRFK  208 (267)
T ss_dssp             TCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred             CCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence            4678899998743  2334455667999999998753 455556666666666555678888999984

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.96  E-value=0.00051  Score=46.71  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      ..++++|++|||||||+.+++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999998763

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.96  E-value=0.00049  Score=47.46  Aligned_cols=20  Identities=35%  Similarity=0.454  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .|++.|.+||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~   21 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLY   21 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999865

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.96  E-value=0.00062  Score=48.11  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~   35 (199)
                      .+.|+|.|.+||||||+++.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998653

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.95  E-value=0.00047  Score=49.95  Aligned_cols=20  Identities=30%  Similarity=0.544  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029077           16 LVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~   35 (199)
                      ++++|++|+|||||++.+..
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.95  E-value=0.00041  Score=54.13  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      -.++|+|++|||||||++.++.
T Consensus       168 gii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998664

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.94  E-value=0.00065  Score=46.43  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +-..|+++|.+||||||+++.|.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~   26 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALE   26 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34578999999999999999865

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.93  E-value=0.00049  Score=48.84  Aligned_cols=20  Identities=35%  Similarity=0.635  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -++++|++|+|||||++.+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~   44 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFI   44 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            57889999999999999866

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.93  E-value=0.00075  Score=46.45  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      ..|++.|.+||||||+.+.|.
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999865

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.92  E-value=0.00047  Score=50.03  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .....|+++|++||||||+.+.|.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~   53 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQ   53 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999865

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.92  E-value=0.00049  Score=52.36  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~   36 (199)
                      +++++|++|||||||++.+.+.
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999986643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.92  E-value=0.00053  Score=55.32  Aligned_cols=39  Identities=21%  Similarity=0.273  Sum_probs=30.6

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ++.++|.  +...-.|++++..+|+++++|||+.+     ||...+
T Consensus       156 ~~~LSgG--ekQRv~iAraL~~~P~lLlLDEPTs~-----LD~~~~  194 (538)
T 1yqt_A          156 IQHLSGG--ELQRVAIAAALLRNATFYFFDEPSSY-----LDIRQR  194 (538)
T ss_dssp             GGGCCHH--HHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHH
T ss_pred             hhhCCHH--HHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHH
Confidence            3445443  44456799999999999999999999     998764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.92  E-value=0.00048  Score=52.62  Aligned_cols=23  Identities=35%  Similarity=0.433  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~   35 (199)
                      .-.|+++|++||||||+++.+..
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            45789999999999999998653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.91  E-value=0.00058  Score=48.32  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      ++|+|+|.+||||||+.+.|.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.91  E-value=0.00059  Score=47.32  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      ..|++.|.+||||||+.+.|.
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~   33 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLV   33 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999865

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.90  E-value=0.00064  Score=46.46  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      .-.+++.|++|+|||+|++.+.
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~   64 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLA   64 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999865

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.89  E-value=0.0031  Score=49.47  Aligned_cols=65  Identities=20%  Similarity=0.224  Sum_probs=41.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh---c---------------CCCC---CccccceeEEEeeEEE--Ee-cCcEEEEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHL---T---------------GEFE---KKYEPTIGVEVHPLDF--FT-NCGKIRFY   65 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~---~---------------~~~~---~~~~~~~~~~~~~~~~--~~-~~~~~~~~   65 (199)
                      ..+..-|.|+|+.++|||+|+|.++   .               ..|.   ....-|.|+-.....+  .. ++....+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            4456778899999999999999543   1               1221   1122355554443222  22 45678899


Q ss_pred             EEeCCCccc
Q 029077           66 CWDTAGQEK   74 (199)
Q Consensus        66 l~D~~g~~~   74 (199)
                      +.||.|...
T Consensus       144 llDTEG~~d  152 (457)
T 4ido_A          144 LMDTQGTFD  152 (457)
T ss_dssp             EEEECCBTC
T ss_pred             EEeccCCCC
Confidence            999999654

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.88  E-value=0.00052  Score=54.46  Aligned_cols=90  Identities=10%  Similarity=0.023  Sum_probs=47.0

Q ss_pred             EEEEEEeCCCccccccc-cc------c----c-ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCC
Q 029077           62 IRFYCWDTAGQEKFGGL-RD------G----Y-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV  129 (199)
Q Consensus        62 ~~~~l~D~~g~~~~~~~-~~------~----~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~  129 (199)
                      +.+.++||+|....... ..      .    + ....+-++++.|++....   .......+.... .. ..+|+||.|.
T Consensus       376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~---al~~ak~f~~~~-~i-tgvIlTKLD~  450 (503)
T 2yhs_A          376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN---AVSQAKLFHEAV-GL-TGITLTKLDG  450 (503)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH---HHHHHHHHHHHT-CC-SEEEEECGGG
T ss_pred             CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH---HHHHHHHHHhhc-CC-CEEEEEcCCC
Confidence            55778999996432111 10      0    1 113567888999775532   112222232221 22 2467899986


Q ss_pred             CCccccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077          130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (199)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      ..  .....+.+....+.++.++.  +|.++
T Consensus       451 ta--kgG~~lsi~~~~~~PI~fig--~Ge~v  477 (503)
T 2yhs_A          451 TA--KGGVIFSVADQFGIPIRYIG--VGERI  477 (503)
T ss_dssp             CS--CCTHHHHHHHHHCCCEEEEE--CSSSG
T ss_pred             cc--cccHHHHHHHHHCCCEEEEe--cCCCh
Confidence            32  23344566666777766643  34444

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.87  E-value=0.00053  Score=54.90  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      .++|+|++||||||+++.++.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~  282 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMM  282 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            599999999999999998653

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.87  E-value=0.00022  Score=50.19  Aligned_cols=20  Identities=35%  Similarity=0.522  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .|+|.|.+||||||+++.|.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~   21 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLS   21 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            58999999999999999865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.87  E-value=0.00062  Score=46.08  Aligned_cols=20  Identities=30%  Similarity=0.444  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .|++.|.+||||||+.+.|.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La   23 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELA   23 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999865

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.86  E-value=0.00055  Score=51.78  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .++++|++|+|||||++.+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia   72 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIA   72 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            58999999999999999865

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.85  E-value=0.00047  Score=51.82  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~   36 (199)
                      -++|+|..|||||||++.+...
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            4688999999999999997743

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.84  E-value=0.00065  Score=46.59  Aligned_cols=20  Identities=45%  Similarity=0.609  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .|+++|.+||||||+.+.|.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La   23 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLA   23 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            59999999999999999865

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.83  E-value=0.00076  Score=44.85  Aligned_cols=20  Identities=30%  Similarity=0.635  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -.+|+|++|+|||||+..+.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            45788999999999999854

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.83  E-value=0.00072  Score=47.91  Aligned_cols=19  Identities=26%  Similarity=0.587  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029077           16 LVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~   34 (199)
                      |+|+|+|||||+|...+|.
T Consensus        32 I~llGpPGsGKgTqa~~L~   50 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLV   50 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5678999999999998865

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.82  E-value=0.00068  Score=49.82  Aligned_cols=20  Identities=30%  Similarity=0.544  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029077           16 LVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~   35 (199)
                      ++++|++|+|||||++.+..
T Consensus        76 vll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHH
Confidence            99999999999999998653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.82  E-value=0.0008  Score=45.43  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .|++.|.+||||||+.+.|.
T Consensus         9 ~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            78999999999999999865

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.82  E-value=0.00088  Score=46.55  Aligned_cols=24  Identities=25%  Similarity=0.271  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      -.++.|+++|..||||||+.+.|.
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~   33 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILK   33 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHH
Confidence            456899999999999999999865

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.82  E-value=0.0017  Score=49.27  Aligned_cols=20  Identities=40%  Similarity=0.536  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029077           16 LVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~   35 (199)
                      +++.|++|+||||+++.+..
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999997654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.80  E-value=0.0009  Score=48.76  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      ..|++.|.+||||||+.+.|.
T Consensus         5 ~lIvl~G~pGSGKSTla~~La   25 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLA   25 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHH
Confidence            479999999999999999865

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.77  E-value=0.0007  Score=53.65  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      =.++|+|++|||||||++.+.+
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            4678999999999999997653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.001  Score=54.41  Aligned_cols=38  Identities=11%  Similarity=0.156  Sum_probs=29.9

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.++|.  +...-.|++++..+|+++++|||+.+     ||..+.
T Consensus       220 ~~LSgG--e~Qrv~iAraL~~~p~llllDEPts~-----LD~~~~  257 (608)
T 3j16_B          220 EKLSGG--ELQRFAIGMSCVQEADVYMFDEPSSY-----LDVKQR  257 (608)
T ss_dssp             TTCCHH--HHHHHHHHHHHHSCCSEEEEECTTTT-----CCHHHH
T ss_pred             HHCCHH--HHHHHHHHHHHHhCCCEEEEECcccC-----CCHHHH
Confidence            444443  44456799999999999999999999     998764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.74  E-value=0.00078  Score=48.84  Aligned_cols=21  Identities=38%  Similarity=0.365  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -+|+++|++||||||+.+.+.
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La   69 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMA   69 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.73  E-value=0.0009  Score=47.87  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      -++++|++|+|||||+..+..
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            578999999999999998764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.73  E-value=0.00081  Score=49.88  Aligned_cols=21  Identities=29%  Similarity=0.632  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      -++|+|++|+|||||++.+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            578999999999999998653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.73  E-value=0.00083  Score=52.74  Aligned_cols=21  Identities=14%  Similarity=0.355  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      +++++|++|||||||++.+.+
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag  179 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMAR  179 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            789999999999999998653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.72  E-value=0.00087  Score=54.79  Aligned_cols=39  Identities=18%  Similarity=0.256  Sum_probs=30.7

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ++.++|.  +.-.-.|++++..+|+++++|||+.+     ||...+
T Consensus       226 ~~~LSGG--ekQRvaIAraL~~~P~lLlLDEPTs~-----LD~~~~  264 (607)
T 3bk7_A          226 LHQLSGG--ELQRVAIAAALLRKAHFYFFDEPSSY-----LDIRQR  264 (607)
T ss_dssp             GGGCCHH--HHHHHHHHHHHHSCCSEEEEECTTTT-----CCHHHH
T ss_pred             hhhCCHH--HHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHH
Confidence            4455554  34456699999999999999999999     998764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.72  E-value=0.00093  Score=47.04  Aligned_cols=21  Identities=24%  Similarity=0.181  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.71  E-value=0.00074  Score=46.01  Aligned_cols=22  Identities=32%  Similarity=0.515  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      .-.+++.|++|+|||+|++.+.
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~   64 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLA   64 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHH
Confidence            4468999999999999999865

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.70  E-value=0.00097  Score=48.34  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.++++|++|+|||||++.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la   66 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIA   66 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHH
Confidence            359999999999999999865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.69  E-value=0.0014  Score=46.82  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +-..|++.|++||||||+++.+.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~   47 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVY   47 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Confidence            45679999999999999999865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.68  E-value=0.0013  Score=46.20  Aligned_cols=22  Identities=18%  Similarity=0.311  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...|+++|.+||||||+++.+.
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~   46 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELE   46 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999999854

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.68  E-value=0.0011  Score=47.11  Aligned_cols=22  Identities=14%  Similarity=0.232  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      .-.+++.|++|+|||+|++.+.
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~   73 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAAC   73 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999865

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.64  E-value=0.0014  Score=45.64  Aligned_cols=20  Identities=25%  Similarity=0.439  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .|+|.|.+||||||+.+.|.
T Consensus         4 ~i~i~G~~GsGKst~~~~la   23 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999999864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.63  E-value=0.0014  Score=46.86  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=19.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .+++++|+|++||||||+.+.|.
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~   29 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIK   29 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHH
Confidence            46899999999999999999864

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.61  E-value=0.00075  Score=50.06  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=17.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +.+.|+|.|++||||||+.+.|.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~   26 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFD   26 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            45679999999999999999865

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.60  E-value=0.0014  Score=45.56  Aligned_cols=21  Identities=29%  Similarity=0.281  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.+++.|++|+|||+|++.+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~   75 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIA   75 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999865

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.59  E-value=0.0014  Score=43.21  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      ....|++.|++|+|||++++.+..
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.57  E-value=0.0013  Score=50.48  Aligned_cols=29  Identities=10%  Similarity=0.329  Sum_probs=23.6

Q ss_pred             HHHHHHHHh------CCCCCceecCCCCCCcccchhHhhh
Q 029077          164 FLYLARKLA------GDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       164 ~~~i~~~~~------~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .-.|++++.      .+|.++++|||+.+     +|....
T Consensus       287 r~~la~al~~~~~~~~~p~~lllDEpt~~-----LD~~~~  321 (365)
T 3qf7_A          287 LISISLAMSLAEVASGRLDAFFIDEGFSS-----LDTENK  321 (365)
T ss_dssp             HHHHHHHHHHHHHTTTTCCEEEEESCCTT-----SCHHHH
T ss_pred             HHHHHHHHHhhhcccCCCCEEEEeCCCcc-----CCHHHH
Confidence            445666666      79999999999999     998765

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.57  E-value=0.0017  Score=46.47  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .+...|+|+|.+||||||+.+.|.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~   37 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIA   37 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHH
Confidence            455689999999999999999865

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.56  E-value=0.0016  Score=48.32  Aligned_cols=22  Identities=23%  Similarity=0.538  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      ..|+++|.+||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.52  E-value=0.0015  Score=56.11  Aligned_cols=39  Identities=28%  Similarity=0.278  Sum_probs=27.6

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ++.++|..  ...-.|++++..+|+++++|||+.+     +|...+
T Consensus       546 ~~~LSGGq--kQRvaLArAL~~~P~lLLLDEPTs~-----LD~~~~  584 (986)
T 2iw3_A          546 ISALSGGW--KMKLALARAVLRNADILLLDEPTNH-----LDTVNV  584 (986)
T ss_dssp             GGGCCHHH--HHHHHHHHHHHTTCSEEEEESTTTT-----CCHHHH
T ss_pred             cccCCHHH--HHHHHHHHHHhcCCCEEEEECCccC-----CCHHHH
Confidence            34454443  3345688888888888888888888     887654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.52  E-value=0.0014  Score=50.40  Aligned_cols=22  Identities=27%  Similarity=0.247  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      .-.++++|++|+|||||++.+.
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~  190 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALL  190 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3478999999999999999865

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.52  E-value=0.0014  Score=48.24  Aligned_cols=21  Identities=24%  Similarity=0.373  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999998664

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.50  E-value=0.0015  Score=46.11  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=19.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +.+.|++.|.+||||||+.+.|.
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~   24 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVA   24 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            34679999999999999999754

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.49  E-value=0.0022  Score=47.64  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .....+++.|++|+|||++++.+.
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHH
Confidence            445689999999999999998644

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.48  E-value=0.0026  Score=49.66  Aligned_cols=23  Identities=43%  Similarity=0.655  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...-|+++|.+||||||+.++|.
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~  279 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHL  279 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            44568899999999999999965

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.47  E-value=0.0023  Score=48.11  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      ..|+|+|++|||||||...|.
T Consensus         6 ~~i~i~GptGsGKTtla~~La   26 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALA   26 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.44  E-value=0.0017  Score=55.71  Aligned_cols=39  Identities=26%  Similarity=0.205  Sum_probs=31.5

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ++.++|...+.  -.|++++..+|.++++|||+.+     ||....
T Consensus       899 ~~~LSGGQkQR--VaLArAL~~~P~LLLLDEPT~g-----LD~~s~  937 (986)
T 2iw3_A          899 IRGLSGGQKVK--LVLAAGTWQRPHLIVLDEPTNY-----LDRDSL  937 (986)
T ss_dssp             GGGCCHHHHHH--HHHHHHHTTCCSEEEEECGGGT-----CCHHHH
T ss_pred             ccccCHHHHHH--HHHHHHHHhCCCEEEEECCccC-----CCHHHH
Confidence            45666654444  5699999999999999999999     998764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.43  E-value=0.0018  Score=45.87  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .++|.|++|+|||||++.+.
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~   66 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLA   66 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999865

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.43  E-value=0.0028  Score=47.08  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      +.-.+++.|++|+|||++++.+..
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCcCHHHHHHHHHH
Confidence            445799999999999999998653

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.41  E-value=0.0019  Score=45.13  Aligned_cols=20  Identities=35%  Similarity=0.414  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .+++.|++|+|||++++.+.
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~   59 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALA   59 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            39999999999999999865

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.41  E-value=0.002  Score=47.70  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      +.-.+++.|++|+|||++++.+..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            346899999999999999998653

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.40  E-value=0.0021  Score=45.04  Aligned_cols=20  Identities=30%  Similarity=0.635  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -.+|+|++|+|||||+..+.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            45788999999999999754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.40  E-value=0.002  Score=47.91  Aligned_cols=86  Identities=10%  Similarity=0.083  Sum_probs=46.6

Q ss_pred             cEEEEEEEeCCCccccccc-c---ccccc--CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCc
Q 029077           60 GKIRFYCWDTAGQEKFGGL-R---DGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR  132 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~-~---~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~  132 (199)
                      ..+.+.++||+|....... .   ...+.  ..+.+++|+|++...  ..+..+...+.    ..+ .-+|.||.|....
T Consensus       181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--~~~~~~~~~~~----~l~~~giVltk~D~~~~  254 (296)
T 2px0_A          181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--EDMKHIVKRFS----SVPVNQYIFTKIDETTS  254 (296)
T ss_dssp             GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--HHHHHHTTTTS----SSCCCEEEEECTTTCSC
T ss_pred             cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--HHHHHHHHHHh----cCCCCEEEEeCCCcccc
Confidence            3467899999996543221 1   11222  367788888876431  22333222221    122 2356699998643


Q ss_pred             cccHHHHHHHHHcCCcEEEec
Q 029077          133 QVKAKQVTFHRKKNLQYYEIS  153 (199)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~s  153 (199)
                      .  ......+...+.++..++
T Consensus       255 ~--g~~~~~~~~~~~pi~~i~  273 (296)
T 2px0_A          255 L--GSVFNILAESKIGVGFMT  273 (296)
T ss_dssp             C--HHHHHHHHTCSCCCSEEC
T ss_pred             h--hHHHHHHHHHCcCEEEEE
Confidence            2  244566667777755544

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.40  E-value=0.0026  Score=47.14  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...+++.|++|+|||+|++.+.
T Consensus        36 p~~lLl~GppGtGKT~la~aiA   57 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVF   57 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4567888999999999999865

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.39  E-value=0.0024  Score=46.92  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..-.+++.|++|+|||+|++.+.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la   72 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVA   72 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHH
Confidence            34569999999999999999865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.37  E-value=0.0026  Score=46.01  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      .-.+++.|++|+|||++++.+.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la   60 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVA   60 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.35  E-value=0.0022  Score=44.68  Aligned_cols=25  Identities=24%  Similarity=0.407  Sum_probs=20.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcC
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~   36 (199)
                      ....|+|+|++|+|||||...|...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999997643

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.35  E-value=0.002  Score=45.15  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=18.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      .-.+++.|++|+||||++..+.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala   79 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFI   79 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHH
Confidence            3459999999999999988755

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.33  E-value=0.0029  Score=47.27  Aligned_cols=23  Identities=26%  Similarity=0.179  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~   35 (199)
                      ..-|+|.|++|||||||...+..
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHHH
Confidence            34688999999999999999653

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.32  E-value=0.0022  Score=45.88  Aligned_cols=20  Identities=40%  Similarity=0.708  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -++++|++|+|||||+..++
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~   44 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFL   44 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999987765

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.32  E-value=0.0027  Score=47.20  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~   35 (199)
                      .-.|++.|++|+|||+|++.+..
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHH
Confidence            34699999999999999998653

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.32  E-value=0.002  Score=51.86  Aligned_cols=19  Identities=37%  Similarity=0.616  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHH
Q 029077           15 KLVIVGDGGTGKTTFVKRH   33 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l   33 (199)
                      .++|+|++|||||||++.+
T Consensus        41 ~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            5889999999999999985

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.31  E-value=0.0021  Score=48.93  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      -+.|+|++|+|||||+..+..
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~  153 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAV  153 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998664

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.29  E-value=0.0037  Score=45.68  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      .....+++.|++|+|||+|++.+..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            4556899999999999999998653

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.28  E-value=0.0025  Score=47.60  Aligned_cols=87  Identities=13%  Similarity=0.034  Sum_probs=47.0

Q ss_pred             EEEEEEEeCCCcccccccc-------c-c----cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCC
Q 029077           61 KIRFYCWDTAGQEKFGGLR-------D-G----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD  128 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~-------~-~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D  128 (199)
                      .+.+.+.|+||........       . .    .-..++.+++|.|++....  .+. ....+... .+. .-+|.||.|
T Consensus       186 ~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~~--~l~-~a~~~~~~-~~i-~gvVlTk~D  260 (306)
T 1vma_A          186 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQN--GLV-QAKIFKEA-VNV-TGIILTKLD  260 (306)
T ss_dssp             TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHH--HHH-HHHHHHHH-SCC-CEEEEECGG
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH--HHH-HHHHHHhc-CCC-CEEEEeCCC
Confidence            3568899999853221110       0 0    1134788899999874321  111 12223222 122 235679999


Q ss_pred             CCCccccHHHHHHHHHcCCcEEEecc
Q 029077          129 VKNRQVKAKQVTFHRKKNLQYYEISA  154 (199)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~s~  154 (199)
                      .....  ..........+.++.+++.
T Consensus       261 ~~~~g--G~~l~~~~~~~~Pi~~i~~  284 (306)
T 1vma_A          261 GTAKG--GITLAIARELGIPIKFIGV  284 (306)
T ss_dssp             GCSCT--THHHHHHHHHCCCEEEEEC
T ss_pred             Cccch--HHHHHHHHHHCCCEEEEeC
Confidence            65332  2355677777888766644

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.28  E-value=0.0024  Score=47.97  Aligned_cols=21  Identities=33%  Similarity=0.422  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.+++.|++|+|||+|++.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~   58 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAG   58 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            468999999999999999865

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.26  E-value=0.0019  Score=47.08  Aligned_cols=24  Identities=33%  Similarity=0.324  Sum_probs=20.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .+...|+|.|..||||||+++.|.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~   45 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILK   45 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHH
Confidence            455789999999999999999754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.23  E-value=0.0015  Score=43.00  Aligned_cols=22  Identities=14%  Similarity=0.264  Sum_probs=18.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...|++.|++|+|||++++.+.
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~   48 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFH   48 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGC
T ss_pred             CCcEEEECCCCccHHHHHHHHH
Confidence            3569999999999999999743

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=96.21  E-value=0.0035  Score=48.59  Aligned_cols=26  Identities=35%  Similarity=0.598  Sum_probs=22.3

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHh
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...+.+|++++|...|||||+++++-
T Consensus        36 ~~~~~~klLLLG~geSGKSTi~KQmk   61 (402)
T 1azs_C           36 VYRATHRLLLLGAGESGKSTIVKQMR   61 (402)
T ss_dssp             CCTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred             HhhccceEEEecCCCCchhhHHHHHH
Confidence            34668999999999999999998744

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.20  E-value=0.0029  Score=47.89  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      .-|+|+|++|||||||...|.
T Consensus         8 ~lI~I~GptgSGKTtla~~La   28 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVA   28 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHH
Confidence            469999999999999999865

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.16  E-value=0.0028  Score=48.34  Aligned_cols=23  Identities=43%  Similarity=0.499  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~   35 (199)
                      .-.++|.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999998653

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.16  E-value=0.0044  Score=47.11  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...+|+++|++|+||||+.+.+.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHH
Confidence            34689999999999999998644

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.15  E-value=0.00036  Score=49.84  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029077           16 LVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~   35 (199)
                      ++|+|++|||||||++.+..
T Consensus        30 ~~i~GpnGsGKSTll~~i~g   49 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVT   49 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            46889999999999998653

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.14  E-value=0.0038  Score=42.41  Aligned_cols=24  Identities=17%  Similarity=0.379  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcC
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~   36 (199)
                      -.-|++.|++|+||||+.-.|+..
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            346899999999999999988753

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.12  E-value=0.0032  Score=47.65  Aligned_cols=20  Identities=35%  Similarity=0.471  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029077           16 LVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~   35 (199)
                      +++.|++|+||||+++.+..
T Consensus        49 ~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998653

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.11  E-value=0.0034  Score=46.54  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...+++.|++|+|||++++.+.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la   71 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLA   71 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999865

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.10  E-value=0.0021  Score=51.96  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +-..|+|+|++|||||||++.|.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La  390 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALA  390 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHH
Confidence            34579999999999999999865

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.10  E-value=0.0037  Score=47.88  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      .++|.|++|+|||||++.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~   66 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWE   66 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998663

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.08  E-value=0.0024  Score=52.91  Aligned_cols=40  Identities=15%  Similarity=0.182  Sum_probs=29.6

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCC---CCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDP---NLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~---~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ...++|..  .-.-.|++++..+|   +++++|||+.+     +|...+.
T Consensus       541 ~~~LSgG~--~qrv~iAraL~~~p~~p~llllDEPt~~-----LD~~~~~  583 (670)
T 3ux8_A          541 ATTLSGGE--AQRVKLAAELHRRSNGRTLYILDEPTTG-----LHVDDIA  583 (670)
T ss_dssp             GGGCCHHH--HHHHHHHHHHHSCCCSCEEEEEESTTTT-----CCHHHHH
T ss_pred             chhCCHHH--HHHHHHHHHHhhCCCCCcEEEEeCCCCC-----CCHHHHH
Confidence            34555543  44566999998776   49999999999     9987653

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.07  E-value=0.0036  Score=47.44  Aligned_cols=28  Identities=25%  Similarity=0.388  Sum_probs=23.9

Q ss_pred             HHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          165 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       165 ~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      -.+++++..+|.++++|||+.+     +|...+
T Consensus       263 l~~a~~l~~~p~~lllDEp~~~-----LD~~~~  290 (339)
T 3qkt_A          263 LAMSLYLAGEISLLILDEPTPY-----LDEERR  290 (339)
T ss_dssp             HHHHHHTTTTTCEEEEECCCTT-----CCHHHH
T ss_pred             HHHHHHhcCCCCEEEEECCCCC-----CCHHHH
Confidence            4567888899999999999999     998764

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.07  E-value=0.0039  Score=42.73  Aligned_cols=21  Identities=14%  Similarity=0.430  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029077           16 LVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~~   36 (199)
                      |+|+|.+|||||++..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999997644

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.06  E-value=0.013  Score=41.54  Aligned_cols=154  Identities=8%  Similarity=0.015  Sum_probs=69.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEE-eCCC-ccccc-cc----cccccc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW-DTAG-QEKFG-GL----RDGYYI   84 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~g-~~~~~-~~----~~~~~~   84 (199)
                      +++=|++-|.++.|||+|+++++...- .......+.     .....+....+.+| |.-. ...+. ..    ......
T Consensus        28 nkilvl~~~~~~~~~~~~~~~lf~~~~-~~~~i~k~v-----~w~TKYYsa~V~IwVDe~~~l~~W~~EF~SdEA~EVR~  101 (233)
T 3uc9_A           28 NKILVLSDHPHNFLKTQFLQDLFHCSS-TGISIVKDQ-----TWENRYYKVHFDLYIDSCKDIPVWVEEFITPECEPLRN  101 (233)
T ss_dssp             CEEEEEEEGGGHHHHHHHHHHHHCCCC-CSSCEEEEE-----EEECSSCEEEEEEEEEEESCHHHHHHHHTSGGGHHHHH
T ss_pred             CceEEEecCcccccHHHHHHHHhcccc-cccccccCC-----eeeeceEEEEcceEEEecCCHHHHHHHhcCHHHHHHHH
Confidence            334444449999999999999775421 111112222     22334445666665 4321 11100 00    011122


Q ss_pred             CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc--cHHHHHHHHHcCCcEEEeccC-------
Q 029077           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAK-------  155 (199)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~-------  155 (199)
                      ...++|+|++.........+....   .....+.-+++|+.-.+......  ..+....+...++.|+.....       
T Consensus       102 viggII~~f~~p~~~~~~~i~~~~---~~~~~dg~~v~Vg~~~~~~~~~~de~~e~~~~~~~~GfE~V~~~~~~~~~~~n  178 (233)
T 3uc9_A          102 VMAGIILITDIRQTKPQELLHQFM---IAAHRNTFVVLVNVNEEVEQDEIDELNEIWSNAFTNVIEFVNWKRSKPTVNHN  178 (233)
T ss_dssp             TEEEEEEEECHHHHCGGGTHHHHH---HHSCTTCEEEEEECCTTCCHHHHHHHHHHHTTSSSSCEEEEECC----CCCBC
T ss_pred             hcceEEEEEeCCCcchHHHHHHHh---ccCCCCceEEEEecCCccCCCchhhHHHHHHHHHhcCeEEEEecCCCcccccc
Confidence            347899999765544443333322   22212344445543332221111  111122334456777765321       


Q ss_pred             ---CCCChHHHHHHHHHHHhCC
Q 029077          156 ---SNYNFEKPFLYLARKLAGD  174 (199)
Q Consensus       156 ---~~~~v~~~~~~i~~~~~~~  174 (199)
                         ...|+..+.+.|-.....+
T Consensus       179 e~gE~~Gi~RI~E~Le~h~W~~  200 (233)
T 3uc9_A          179 DYGEKLGLDRIQEIIDTHDWLN  200 (233)
T ss_dssp             TTSCBCHHHHHHHHHHHCCCTT
T ss_pred             cccchhCHHHHHHHHHhCCCCC
Confidence               2235666665555444433

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.05  E-value=0.0028  Score=47.66  Aligned_cols=32  Identities=19%  Similarity=0.133  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHh----CCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLA----GDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~----~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++.    ..+.++++|||+.+     +|....
T Consensus       224 q~q~v~ia~~l~~~~~~~~~~lllDEp~~~-----LD~~~~  259 (322)
T 1e69_A          224 EKALVGLALLFALMEIKPSPFYVLDEVDSP-----LDDYNA  259 (322)
T ss_dssp             HHHHHHHHHHHHHTTTSCCSEEEEESCCSS-----CCHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCCEEEEeCCCCC-----CCHHHH
Confidence            334456777765    67899999999999     998754

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.05  E-value=0.0051  Score=43.40  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=20.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      |+-.-|++.|.+||||||+++.+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~   27 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLA   27 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHH
Confidence            455789999999999999999864

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.04  E-value=0.0046  Score=46.42  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +...|++.|++|+|||+|++.+.
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia   72 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVA   72 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHH
Confidence            34579999999999999999865

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.04  E-value=0.0046  Score=46.50  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      +.-.|++.|++|+|||+|++.+..
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHHH
Confidence            345799999999999999998663

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.04  E-value=0.001  Score=51.73  Aligned_cols=33  Identities=18%  Similarity=-0.025  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHhCCC--CCceecCCCCCCcccchhHhhhc
Q 029077          161 EKPFLYLARKLAGDP--NLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~--~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.-.-.|+.++..++  .++++|||+.+     ||...++
T Consensus       300 e~qrl~lA~~l~~~~~~~~LlLDEpt~~-----LD~~~~~  334 (415)
T 4aby_A          300 ELSRVMLAVSTVLGADTPSVVFDEVDAG-----IGGAAAI  334 (415)
T ss_dssp             HHHHHHHHHHHHHCCSSSEEEESSTTTT-----CCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCCC-----CCHHHHH
Confidence            344456888999999  99999999999     9987653

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.0047  Score=48.34  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..-.|++.||||+|||+|++.+.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA  236 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACA  236 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHH
Confidence            34589999999999999999865

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.01  E-value=0.0059  Score=45.52  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      .-|+|+|++|||||||...+.
T Consensus        11 ~~i~i~GptgsGKt~la~~La   31 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELR   31 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHH
Confidence            358899999999999999865

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.01  E-value=0.004  Score=47.55  Aligned_cols=30  Identities=17%  Similarity=0.214  Sum_probs=24.3

Q ss_pred             HHHHHHHHHh---------CCCCCceecCCCCCCcccchhHhhh
Q 029077          163 PFLYLARKLA---------GDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       163 ~~~~i~~~~~---------~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      -.-.|+.++.         ..|.++++|||+.+     +|...+
T Consensus       272 q~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~-----LD~~~~  310 (359)
T 2o5v_A          272 RTVALALRRAELELLREKFGEDPVLLLDDFTAE-----LDPHRR  310 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGC-----CCHHHH
T ss_pred             HHHHHHHHHHHhhhhhhccCCCCEEEEeCcccc-----CCHHHH
Confidence            3445777777         79999999999999     998764

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.00  E-value=0.0037  Score=48.48  Aligned_cols=20  Identities=20%  Similarity=0.232  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -++|+|++|+|||||+..+.
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            57899999999999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-39
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-39
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-37
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-37
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	5e-37
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-37
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	5e-36
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-35
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-35
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	6e-34
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-33
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-33
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-33
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	2e-33
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	9e-33
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-32
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	3e-32
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-31
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-31
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	6e-31
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-29
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-29
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	4e-29
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	1e-27
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	6e-27
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	7e-27
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	9e-27
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-26
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-26
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-26
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	3e-26
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-26
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-25
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-24
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-24
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	7e-24
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	7e-23
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-22
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	6e-21
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-20
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-20
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	5e-20
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	5e-20
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	7e-20
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-19
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	7e-19
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-18
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	5e-18
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-17
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	6e-17
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-15
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-14
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	5e-14
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	1e-13
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	9e-13
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	1e-11
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-11
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	1e-07
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-07
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	3e-07
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	3e-07
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	1e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	2e-06
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	5e-06
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	9e-06
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	2e-05
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	1e-04
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.002
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	0.004

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (326), Expect = 4e-39
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++D+T   T+ N+   +        +   ++L GNK D++ R
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 133 QVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
            V A Q     K+  + + E SAK++ N  + F  LA+ +
Sbjct: 123 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 5e-39
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
            + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAG
Sbjct: 6   TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDV 129
           QE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C   +I  +L GNK+D 
Sbjct: 66  QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 125

Query: 130 KNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 177
           +NR+V + + + F RK ++ + E SAK+    +  F  L  K+   P L
Sbjct: 126 ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 174

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 2e-37
 Identities = 140/167 (83%), Positives = 151/167 (90%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123

Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV
Sbjct: 124 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 170

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  126 bits (316), Expect = 3e-37
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           DY  FKL+++G+ G GK+  + R     +   Y  TIGV+        +   ++   WDT
Sbjct: 4   DY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
           AGQE+F  +   YY      II++DVT + ++  V  W +++ R     +  +L GNK D
Sbjct: 63  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 122

Query: 129 VKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL 171
           +K+++V    V         + + E SA  + N E  FL +AR++
Sbjct: 123 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 167

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  124 bits (313), Expect = 5e-37
 Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 4/168 (2%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYC 66
           +T DY  FKL+++GD G GKT  + R     F   +  TIG++        +  +I+   
Sbjct: 1   KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 59

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGN 125
           WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GN
Sbjct: 60  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 119

Query: 126 KVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K DV +++  +K+          +++ E SAK+N N E  F  LAR +
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (312), Expect = 5e-37
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           D+  FK+V++G+ G GKT  V+R   G F      TIGV+        N  K++   WDT
Sbjct: 3   DF-LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 128
           AGQE+F  +   YY      I+ +D+T   +++ +P             +  VL GNK+D
Sbjct: 62  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 121

Query: 129 VKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +  R+  ++Q    F   +++ Y E SAK + N EK FL LA +L
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 5e-36
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     IR   WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR 132
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ ++
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
           +  + +      ++ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 163

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 4e-35
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           DY  FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDT
Sbjct: 2   DY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
           AGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 129 VKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +++ +         F  K NL + E SA  + N E+ F  +  ++
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 5e-35
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 4/167 (2%)

Query: 8   TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW 67
           T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++   W
Sbjct: 1   TYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 59

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN- 125
           DTAGQE+F  +   YY     A++++D+T+R TY  +  W  D      +NI I+LCGN 
Sbjct: 60  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 119

Query: 126 -KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             +D        +   F ++  L + E SA +  N E+ F+  ARK+
Sbjct: 120 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  116 bits (292), Expect = 6e-34
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           DY  FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDT
Sbjct: 3   DY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN---IPIVLCGNK 126
           AGQE++  +   YY      I+M+D+T   ++  V  W   +     +   + +V     
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121

Query: 127 VDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++ +      +          +++E SAK N N ++ F  L   +
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 1e-33
 Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+++R
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 133 QVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +   ++    F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 164

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 1e-33
 Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 5/162 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +K+V++G GG GK+    + +TG F +KY+PTI  + +  +   +         DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ  I+++ +  + +++++      +   +  E +P++L GNKVD+++
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +  +         +    + E SAKS    ++ F  + R++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 1e-33
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
            Y  FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDT
Sbjct: 2   SY-IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
           AGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 129 VKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++ ++    +    F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 2e-33
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
           D  +FK+++VGD G GKT  + R   G F    +  T+G++        +  K++   WD
Sbjct: 4   DV-AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 62

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGN-K 126
           TAGQE+F  +   YY      ++++DVT + ++ N+  W  ++      ++ ++L GN  
Sbjct: 63  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 122

Query: 127 VDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                R VK +      ++  L + E SAK+  N +  F  +A++L
Sbjct: 123 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (284), Expect = 9e-33
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 6/166 (3%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
            S KLV++G+   GK++ V R ++ +F +  EPTIG          N   ++F  WDTAG
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDV- 129
           QE+F  L   YY + Q A++++DVT   ++            +  ++I I L GNK+D+ 
Sbjct: 62  QERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDML 121

Query: 130 ----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               + +  + +      +K L ++E SAK+  N    FL +  K+
Sbjct: 122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 2e-32
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 15/176 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV----------HPLDFFTNC 59
           DY   KL+ +GD G GKTTF+ R+   +F  K+  T+G++            P       
Sbjct: 3   DY-LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61

Query: 60  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CEN 117
            K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN
Sbjct: 62  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121

Query: 118 IPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             IVL GNK D+ +++   ++       K  + Y+E SA +  N EK    L   +
Sbjct: 122 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 3e-32
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 130
           QE++  L   YY   Q AI+++D+T   ++            +   NI I L GNK D+ 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 131 NRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           N++    Q         +L + E SAK++ N  + F+ +A+KL
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (274), Expect = 3e-31
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 7/165 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++     +     + P V+ GNK+D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 129 VKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +  RQV  ++         +  Y+E SAK   N    F    R++
Sbjct: 127 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  109 bits (272), Expect = 4e-31
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
              K+++VG GG GK+    + +  EF + YEPT            +  +++    DTAG
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEEVQIDILDTAG 61

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 129
           QE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121

Query: 130 KNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++++  +         + N+ Y E SAK+  N +K F  L R++
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 6e-31
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 4/163 (2%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             +KLV+VG GG GK+    + +   F  +Y+PTI           +         DTAG
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAG 60

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 129
           QE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

Query: 130 KNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             R V   +     R   + Y E SAK+    E  F  L R++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  105 bits (262), Expect = 1e-29
 Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K+ ++GD G GK++ + R +   F+    PTIG               +F  WDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN--KVDVK 130
           +F  L   YY     AII++D+T   T+  +             +I + + GN   +   
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              ++     +    +  + E SAK+  N  + F+ ++R++
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 1e-29
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK+V++G+G  GKT+ V R+   +F  K+  T+G             ++    WDTAGQ
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E+F  L   YY     AI+++D+T   +++            +   I + + GNK+D++ 
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 122

Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +  + Q   ++      ++Y  SAK N   E+ FL L +++
Sbjct: 123 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 4e-29
 Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 6/163 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G GG GK+    + + G F +KY+PTI           +C +      DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK-QVEVDCQQCMLEILDTAGTE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   E++P++L GNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 132 RQVKAKQVTFH---RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K+   +   +  N  + E SAKS  N  + F  L R++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (249), Expect = 1e-27
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 2/161 (1%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQ
Sbjct: 2   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           E+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L  NK+D+ + 
Sbjct: 62  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 121

Query: 133 QV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                 +     ++  L++Y  S K + N  + F YLA K 
Sbjct: 122 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 6e-27
 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 17/175 (9%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+                    +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG-EPYTLGLFDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV           C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 132 RQVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKL 171
                +++  +++               K ++Y E SA +    +  F       
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.6 bits (244), Expect = 7e-27
 Identities = 51/167 (30%), Positives = 85/167 (50%), Gaps = 6/167 (3%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           + P++KLV+VGDGG GK+    +     F   Y+PTI           +         DT
Sbjct: 1   NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLK-HTEIDNQWAILDVLDT 59

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKV 127
           AGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV +  + P++L  NKV
Sbjct: 60  AGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 119

Query: 128 DVKNRQ--VKAKQVTFHRKKNLQYYEISAKS-NYNFEKPFLYLARKL 171
           D+ + +   + +      K N+ Y E SAK    N +K F  L R +
Sbjct: 120 DLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 98.6 bits (244), Expect = 9e-27
 Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 7/165 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +          EN P V+ GNK+D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 129 VKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++NRQV  K+     + K N+ Y+E SAK   N E+ F  +AR  
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (241), Expect = 2e-26
 Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 5/162 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++LV+VG GG GK+    + +   F   Y+PTI  + +      +    R    DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNK--VDV 129
           +FG +R+ Y   G+  +++F VT R +++ +  + R + R    +  P++L GNK  +D 
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           + +  + +     R+  + Y E SAK   N ++ F  L R +
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.4 bits (241), Expect = 2e-26
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 74  KFGGL-RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK 130
           +F       YY +    + ++D+T   ++ ++P W  +  +     +IP +L GNK D++
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122

Query: 131 NRQVKAKQV--TFHRKKNLQYYEISAKS---NYNFEKPFLYLA 168
           +       +   F    ++  +E SAK+   N + E  F+ LA
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 97.4 bits (241), Expect = 2e-26
 Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 10/168 (5%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQ 72
            K++I+GD G GKT+ + R++  ++ ++Y+ TIG +    +             WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKV 127
           E+F  L   +Y    C ++++DVT   +++N+ +W  +          E  P V+ GNK+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 128 DVKNRQVKAK----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D +  +        Q       ++  +  SAK+  N +  F  +AR  
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (241), Expect = 3e-26
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 17/175 (9%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+               +    WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK-PVNLGLWDTAGQ 63

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV       +   C N PI+L G K+D+++
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 132 RQVKAKQVTFHR---------------KKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +   +++   +                  ++Y E SA +    +  F    R +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 4e-26
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 6/161 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +++ + G GG GK++ V R + G F + Y PT+           +         DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSH 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNK--VD 128
           +F  ++      G   I+++ +T+R + + +   +  +C +    E+IPI+L GNK    
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
                  ++     R     + E SAK N+N ++ F  L  
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 162

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (236), Expect = 1e-25
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + KLV+VG GG GK+    + +   F   Y+P    + +      +    R    DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 130
           E+FG +R+ Y   G   +++F +  R ++  V      + RV   ++ P+VL GNK D++
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 131 NRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +++   +++   F    ++ Y+E SAK   N ++ F  L R +
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 2e-24
 Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 12/164 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           ++++VG    GKTT + +   GE       T    +           I F  WD  GQ+K
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNR 132
              L   Y+ + Q  I + D   R            +       +  +++  NK D+ N 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 133 QVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              A+      +   R +N       A S     +   +L+ +L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 3e-24
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 17/174 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            +  LR   Y      ++ F + +  + +N+P       +  C N+PI+L GNK D++N 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 133 QVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKL 171
           +   +++   ++                   Y E SAK+     + F    R  
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.2 bits (225), Expect = 7e-24
 Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 17/173 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  +    F ++Y PT+              +     +DTAGQE
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGK-QYLLGLYDTAGQE 68

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            +  LR   Y      +I F V    +++NV        +    N+P +L G ++D+++ 
Sbjct: 69  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 128

Query: 133 QVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARK 170
                ++   ++                   Y E SA +    +  F      
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.6 bits (218), Expect = 7e-23
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 17/174 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      +I FD++   T  +V    +      C N  ++L G K D++   
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 134 VKAKQVTFHRKK---------------NLQYYEISAKSNYNFEKPFLYLARKLA 172
               +++ HR+                   Y E SA  + N  +   ++A    
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 6e-22
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 12/165 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++++G    GKTT + +   G+       T    V           ++F  WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN 131
           K   L   YY   Q  I + D   R            +    E  +  I++  NK D+ +
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 132 RQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                +      +T  R +N       A S     +   +L    
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 83.2 bits (204), Expect = 6e-21
 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 11/163 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQP 58

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN 131
           +F  + + Y       + M D   +   +       +L      + IP+++ GNK D+  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 132 -----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
                  ++   ++  + + +  Y IS K   N +    +L +
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 161

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 81.5 bits (200), Expect = 3e-20
 Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 12/166 (7%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             +++++G    GKTT +K+  + +                         +   WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHITPT-----QGFNIKSVQSQGFKLNVWDIGGQ 70

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK 130
            K       Y+ +    I + D   R  ++       +L        +P+++  NK D+ 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 131 NRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                ++      +   R +  Q    SA +    +    ++ + +
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (199), Expect = 3e-20
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 7/163 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            KL I G  G GK+  V R LT  F  +Y+PT+  E       T   ++          +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL--ESTYRHQATIDDEVVSMEILDTAGQ 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKV--DV 129
           +    R+G+   G+  ++++D+T R +++ V      L  + +  N+ ++L GNK   D 
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKL 171
             +    +      +    +YE SA +   N  + F  L R++
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (197), Expect = 5e-20
 Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 5/162 (3%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F   Y+PTI      L    N  +      DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 62

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV- 129
           +++      Y I     I+++ VT         V             IPI+L GNK D+ 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 130 -KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
            +      +        N  + E SAK N      F  +  +
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 80.8 bits (198), Expect = 5e-20
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 12/165 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKTT + R   GE      PTIG  V  L        ++   WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVETLS----YKNLKLNVWDLGGQT 72

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
                   YY      I + D T +            + +    ++  +++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 132 -----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                   K   +   + ++      SA       +   +L   +
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 7e-20
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 16/169 (9%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           P  +L ++GD  +GK++ + R LTG ++   +         +        +       A 
Sbjct: 4   PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKV 127
             K       +       I +F +    +++ V   H  L  +       + + L G + 
Sbjct: 64  DAK-------FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 116

Query: 128 DVKNRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +     +       +      K   YYE  A    N ++ F  +A+K+
Sbjct: 117 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 78.6 bits (192), Expect = 3e-19
 Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 12/166 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L+++G    GKTT +K+    + +     TI   +            +   WD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
                   Y+      I + D   R   ++     + L          +++  NK D+  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 132 R-----QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
                   +A ++   R  + +    SA +  +      +L   ++
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 163

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 7e-19
 Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 6/164 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR----FYCWDT 69
           +++V++G+ G GK+T              +  +  E          G+         W+ 
Sbjct: 4   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
            G+ ++              +      A     +         R  E+IPI+L GNK D+
Sbjct: 64  KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123

Query: 130 KNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              +    ++        + ++ E SA   +N ++ F  + R++
Sbjct: 124 VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (186), Expect = 2e-18
 Identities = 22/160 (13%), Positives = 51/160 (31%), Gaps = 2/160 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +K++++G  G GK+   +     E   + E         +        +  Y        
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV--KN 131
           ++              +            +         R  +++PI+L GNK D+    
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121

Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                +        + ++ E SA  ++N +  F  + R++
Sbjct: 122 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 5e-18
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 12/165 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++IVG    GKTT + +     F           +            RF  WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQ-----FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKN 131
                 + YY + +  I++ D T R            +    +     +++  NK DVK 
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 132 RQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                   +  ++T  +          A +     +   ++  +L
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 73.6 bits (179), Expect = 3e-17
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 12/165 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKTT + R   GE       T    +           ++F  WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
                   YY +    I + D   R       +    +          +V+  NK D++ 
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 132 RQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               ++          + +  Q ++ SA      ++   +L   L
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.4 bits (176), Expect = 6e-17
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 19/169 (11%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KL+ +G    GKTT +              T+    HP       G I+F  +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR 132
              L   Y+      + + D      +         L  + E  ++P V+ GNK+D  N 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 133 QVKAKQVT------------FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
             +A+  +               ++ ++ +  S      + + F +L++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 69.7 bits (169), Expect = 1e-15
 Identities = 27/178 (15%), Positives = 53/178 (29%), Gaps = 24/178 (13%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + KLV +G    GKTT +         +          HP         + F  +D  G 
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTL-----HPTSEELTIAGMTFTTFDLGGH 67

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 130
            +   +   Y       + + D                L       N+PI++ GNK+D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 131 NRQVKAK-----------------QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               + +                  +     + L+ +  S      + + F ++A+ +
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.1 bits (160), Expect = 3e-14
 Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 19/168 (11%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++G G +GK+TF+K+          +PT G+  +  +         F   D  GQ 
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEIKNVP----FKMVDVGGQR 55

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE------------NIPIV 121
                    +      + +   +              L                 N+ I+
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           L  NK D+   +V+   +  +  +                + F    R
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRR 163

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.9 bits (160), Expect = 5e-14
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 20/142 (14%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + +L+++G G +GK+T VK+            T G+            K+ F+ +D  GQ
Sbjct: 6   THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQV----DKVNFHMFDVGGQ 57

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------------RVCENIPI 120
                     +      I +   ++             L             R    I +
Sbjct: 58  RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 117

Query: 121 VLCGNKVDVKNRQVKAKQVTFH 142
           +L  NK D+   +V A +    
Sbjct: 118 ILFLNKQDLLAEKVLAGKSKIE 139

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.6 bits (156), Expect = 1e-13
 Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 46/191 (24%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            KL+++G G +GK+TF+K+           PT G+  +P D  +      F   D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVI----FRMVDVGGQR 56

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------------RVCENIPIV 121
                    + +    + +  ++              +                +N  ++
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 122 LCGNKVDVKNRQV----------------------------KAKQVTFHRKKNLQYYEIS 153
           L  NK D+   ++                                +     K +  +   
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 154 AKSNYNFEKPF 164
           A    N    F
Sbjct: 177 ATDTENIRFVF 187

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.3 bits (150), Expect = 9e-13
 Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 16/164 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
            ++ VG   +GKT    R LTG++ +  + +I           N G           +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARL-----TYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
              L D +    +  + + D  A         + +     D   +  +  +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 130 KN----RQVKAK------QVTFHRKKNLQYYEISAKSNYNFEKP 163
                 + ++ +       +   R       + S+ +     K 
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKK 164

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 58.2 bits (139), Expect = 1e-11
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 14/166 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K+VI G    GK++ +   L G          G     L    +   +  +  DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNA-LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 74  KFGGLRDGYYI--------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
           +     +   I             + M D T          W   + R+   +PI +  N
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D+    +   +V  H         +SA++    +    +L + +
Sbjct: 121 KADITGETLGMSEVNGH-----ALIRLSARTGEGVDVLRNHLKQSM 161

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.0 bits (139), Expect = 3e-11
 Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 22/169 (13%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            KL+++G G +GK+T VK+      +  +E   G+      F        F  +D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQ-----MKIIHEAGTGIVETHFTFKDLH----FKMFDVGGQR 53

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL------------CRVCENIPIV 121
                    +      I    ++              +             +   +  I+
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           L  NK D+   ++K   +T    +          + Y  +  F  L ++
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY-IQCQFEDLNKR 161

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.4 bits (111), Expect = 1e-07
 Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 17/166 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+ IVG    GK+T     +  +      P  G    P+D        ++   DTAG 
Sbjct: 8   AIKVAIVGRPNVGKSTLFNA-ILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 66

Query: 73  EKFGGLRDGYYIHGQCA----------IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 122
            +   +                     +++  + A             L        +V+
Sbjct: 67  RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVV 126

Query: 123 CGNKVDVKNRQVKAKQVTFHRKKNLQYYE------ISAKSNYNFEK 162
                 V +R+ +  + T   ++ L + +       SA   +N ++
Sbjct: 127 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR 172

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 28/179 (15%), Positives = 48/179 (26%), Gaps = 13/179 (7%)

Query: 18  IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG------ 71
           +VG    GK++ +   +T    K            L       + RF   D  G      
Sbjct: 6   LVGYPNAGKSSLLAA-MTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS 64

Query: 72  -QEKFGG--LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
             +  G   LR          ++        T + +              P ++  NKVD
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 187
           +   +          ++ L    +SA +          L   +   P     E P   P
Sbjct: 125 LLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPP---PEMPKPVP 180

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.6 bits (109), Expect = 3e-07
 Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 26/167 (15%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           ++I G   +GKT+ +   LT +          V         +         D  G  K 
Sbjct: 6   IIIAGPQNSGKTSLLTL-LTTD-----SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKL 59

Query: 76  GGLRDGYYIHGQCAIIMF-----DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGN 125
                 Y       +                     +  D+  + E      I I++  N
Sbjct: 60  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 119

Query: 126 KVDVKNRQVKAK----------QVTFHRKKNLQYYEISAKSNYNFEK 162
           K ++   +  +K          +V   RKK+L   E         E 
Sbjct: 120 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAEN 166

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.3 bits (108), Expect = 3e-07
 Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 7/161 (4%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76
           +IVG    GK+T   + L  + +   E   GV   P+          F   DT G     
Sbjct: 4   LIVGRPNVGKSTLFNK-LVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 77  GLRDGYYIHGQC------AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130
                  +          A ++  V                      +  +L  NK +  
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122

Query: 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               +  +   +     +   +SA+ N N +     + +KL
Sbjct: 123 REFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKL 163

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 29/166 (17%), Positives = 46/166 (27%), Gaps = 8/166 (4%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S  + IVG    GK+T +   L G       P        L      G+ +    DT G 
Sbjct: 5   SGFVAIVGKPNVGKSTLLNN-LLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 63

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLT-------YKNVPTWHRDLCRVCENIPIVLCGN 125
            K       +        +                        R L  +   +PI+L GN
Sbjct: 64  HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGN 123

Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K+D      +A +         +   +SA       +    L   +
Sbjct: 124 KLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 169

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 15/164 (9%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCGKIRF 64
           + +D     + + G+ G+GK++F+        E++     GV    ++   + +      
Sbjct: 50  KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNV 109

Query: 65  YCWDTAGQEKFGGLRDGY---YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIP 119
             WD  G        D Y       +    +     R           D+ +        
Sbjct: 110 VFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKK-----NDIDIAKAISMMKKE 164

Query: 120 IVLCGNKVD-VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
                 KVD     +   +  TF ++K LQ  +I       F +
Sbjct: 165 FYFVRTKVDSDITNEADGEPQTFDKEKVLQ--DIRLNCVNTFRE 206

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.0 bits (100), Expect = 5e-06
 Identities = 26/171 (15%), Positives = 48/171 (28%), Gaps = 14/171 (8%)

Query: 18  IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----QE 73
           +VG    GK+T +   ++    K  +      V  L          F   D  G      
Sbjct: 6   LVGFPSVGKSTLLSV-VSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 64

Query: 74  KFGGL---------RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
           +  GL         R    +H      +        Y  +     +        P ++  
Sbjct: 65  QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 124

Query: 125 NKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175
           NK+D+       +        +   + ISA +     +    +A +L   P
Sbjct: 125 NKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 175

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.9 bits (97), Expect = 9e-06
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 12/155 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-QE 73
           ++VIVG    GK+T + R L  E         G     +        I F   DTAG + 
Sbjct: 2   RMVIVGKPNVGKSTLLNR-LLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 74  KFGGLRDGYYIH------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127
           +   L +   I        +  I++F + A      +    R +    +N   ++  NKV
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDA---SSPLDEEDRKILERIKNKRYLVVINKV 117

Query: 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
           DV  +  + +++      +    +ISA      EK
Sbjct: 118 DVVEKINE-EEIKNKLGTDRHMVKISALKGEGLEK 151

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 41.2 bits (95), Expect = 2e-05
 Identities = 30/179 (16%), Positives = 52/179 (29%), Gaps = 17/179 (9%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76
            IVG    GK+T + + L G+             H +      G  +    DT G     
Sbjct: 9   AIVGRPNVGKSTLLNK-LLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67

Query: 77  GLRDGYYIHGQCAIIMFDV--------TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
                  ++   +  + DV          R T  +    ++        I  V   + V 
Sbjct: 68  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127

Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 187
            K   +   Q    +   L    ISA++  N +     + + L         E+    P
Sbjct: 128 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP--------EATHHFP 178

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 17/169 (10%), Positives = 51/169 (30%), Gaps = 12/169 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-------IRFYCW 67
           ++ + G    GK++F+   +  +   +     G       +  N            F   
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127
             + +E +G + + Y    +    +  +       +              IP+++   K 
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 128 DVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEKPFLYLARKL 171
           D   +    K     R+        +    S+++    ++ +  + + +
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 1/101 (0%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           L      GTGKTT + + L      +      ++    D   +      Y    AG  + 
Sbjct: 5   LAFAAWSGTGKTTLL-KKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63

Query: 76  GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 116
                  +          ++  +     + T   DL  V  
Sbjct: 64  IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEG 104

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 34.8 bits (78), Expect = 0.004
 Identities = 18/162 (11%), Positives = 43/162 (26%), Gaps = 13/162 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++   G    GK++ +      +   +   T G       F    GK           E
Sbjct: 17  IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76

Query: 74  KFGGLRDGYYIH--------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
               ++  +                ++  +  R   K++     +         +VL   
Sbjct: 77  VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136

Query: 126 KVDVKNRQVKA-----KQVTFHRKKNLQYYEISAKSNYNFEK 162
              + +   KA     ++       ++Q    S+      +K
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.91
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.89
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.86
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.86
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.85
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.84
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.84
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.83
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.82
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.82
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.81
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.77
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.75
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.75
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.71
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.71
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.69
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.67
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.66
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.66
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.58
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.58
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.51
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.5
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.33
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.25
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.2
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.97
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.9
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.9
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.89
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.84
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.81
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.8
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.76
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.75
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.73
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.73
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.73
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.72
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.7
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.68
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.68
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.67
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.66
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.62
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.5
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.46
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.46
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.44
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.36
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.36
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.36
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.34
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.32
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.31
d1okkd2	207	GTPase domain of the signal recognition particle r	98.27
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.22
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.2
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.14
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.11
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.0
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.98
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.97
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.93
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.92
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.92
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.87
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.82
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.79
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.78
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.75
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.73
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.72
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.71
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.69
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.68
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.67
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.61
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.61
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.6
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.59
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.58
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.56
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.51
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.5
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.5
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.47
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.47
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.46
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.44
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.43
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.41
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.38
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.35
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.34
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.34
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.33
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.28
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.26
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.25
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.22
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.2
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.19
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.17
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.11
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.07
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.06
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.04
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.04
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.01
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.0
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.0
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.95
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.91
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.91
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.89
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.85
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.85
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.83
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.81
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.79
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.78
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.78
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.71
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.69
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.65
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.64
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.59
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.58
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.58
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.57
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.57
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.56
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.54
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.52
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.45
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.42
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.33
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.31
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.3
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.29
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.26
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.26
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.25
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.24
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.22
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.22
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.21
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.2
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.14
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.1
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.06
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.02
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.97
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.94
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.94
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.93
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.89
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.81
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.79
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.67
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.63
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.47
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.45
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.42
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.41
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.36
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.31
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.29
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.24
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.2
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.16
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.15
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.07
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.92
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.67
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.64
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.57
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.57
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.5
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	94.29
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.25
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.23
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.21
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.05
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	93.32
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.2
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.18
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.1
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.64
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.6
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.37
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.82
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	91.69
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.84
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	90.63
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.46
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.15
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.09
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	89.5
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	89.17
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	88.92
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	88.9
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	88.71
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	88.69
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.45
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	88.16
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	87.71
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.41
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	86.86
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	86.86
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	85.85
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	85.24
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	84.48
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	82.25
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.18
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.01
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	81.69
d1ls1a2	207	GTPase domain of the signal sequence recognition p	81.33

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-39  Score=221.28  Aligned_cols=167  Identities=83%  Similarity=1.391  Sum_probs=151.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||+++|..+.+...+.+|.|.++.......++..+.+.+||++|+..+...+..++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999999999999999888888888899999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      ||++++++|+.+..|+..+.+..++.|+++||||.|+.+.....+...+++..+++|+++||++|.|++++|.+|++.+.
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~  162 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI  162 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence            99999999999999999998888899999999999998877777778889999999999999999999999999999999


Q ss_pred             CCCCCce
Q 029077          173 GDPNLHF  179 (199)
Q Consensus       173 ~~~~~~~  179 (199)
                      .++.+.+
T Consensus       163 ~~~~~~~  169 (170)
T d1i2ma_         163 GDPNLEF  169 (170)
T ss_dssp             TCTTCCB
T ss_pred             cCCCCCc
Confidence            8887754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.3e-37  Score=209.31  Aligned_cols=161  Identities=31%  Similarity=0.617  Sum_probs=147.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||+++|..+.+...+.+|.+.+........++..+.+.+||++|+..+......+++.++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            58999999999999999999999999999999999888888888898999999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      ||++++.+++.+..|+..+.+..++.|+++||||.|+.+. .+.. +...+++..+++|+++||++|.|++++|+.|++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~  161 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK  161 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHH
Confidence            9999999999999999999988899999999999998763 4433 4567899999999999999999999999999998


Q ss_pred             HhC
Q 029077          171 LAG  173 (199)
Q Consensus       171 ~~~  173 (199)
                      +.+
T Consensus       162 ~lq  164 (164)
T d1z2aa1         162 HLQ  164 (164)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-35  Score=205.55  Aligned_cols=167  Identities=30%  Similarity=0.513  Sum_probs=146.2

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      |++.+.+||+++|.+|||||||+++|..+.+...+.++.. +.....+.+++..+.+.+||++|.+++...+..++++++
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~   79 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   79 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccce
Confidence            3556789999999999999999999999999888888764 555566777888999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      ++++|||+++..+|..+..|+..+.+..  .+.|+++||||.|+.+. ... .+...+++..+++|++|||++|.|++++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  159 (173)
T d2fn4a1          80 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  159 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             eeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHH
Confidence            9999999999999999999999887653  67899999999998763 333 4567899999999999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 029077          164 FLYLARKLAGDP  175 (199)
Q Consensus       164 ~~~i~~~~~~~~  175 (199)
                      |..|++.+....
T Consensus       160 f~~l~~~i~k~~  171 (173)
T d2fn4a1         160 FEQLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999886543

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.3e-35  Score=202.99  Aligned_cols=161  Identities=27%  Similarity=0.567  Sum_probs=144.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||+++|..+.+...+.++.+.+.........+..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            48999999999999999999999999999999999898888888888899999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||+++.+++..+..|...+.... .+.|+++|+||.|+.+.. +. .+...+++..++++++|||++|.|++++|++|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~  164 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD  164 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            99999999999998887776554 578899999999998743 33 3446788999999999999999999999999999


Q ss_pred             HHhC
Q 029077          170 KLAG  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+.+
T Consensus       165 ~i~e  168 (169)
T d3raba_         165 VICE  168 (169)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            8875

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.3e-35  Score=201.57  Aligned_cols=162  Identities=33%  Similarity=0.519  Sum_probs=143.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+++|+.|||||||+++|+.+.+...+.++.+..+ ......++..+.+.+||++|.+.+...+..+++.+|+++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            5689999999999999999999999998888888887443 455667888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCC-ChHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNY-NFEKPFL  165 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~-~v~~~~~  165 (199)
                      +|||++++.+|..+..|+..+.+..  .+.|++++|||.|+.+. .+. ++..++++.++++|+++||++|. ||+++|.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            9999999999999999999987664  47899999999999764 443 45568999999999999999987 9999999


Q ss_pred             HHHHHHhC
Q 029077          166 YLARKLAG  173 (199)
Q Consensus       166 ~i~~~~~~  173 (199)
                      .|++.+.+
T Consensus       161 ~l~~~i~~  168 (169)
T d1x1ra1         161 DLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=202.11  Aligned_cols=159  Identities=31%  Similarity=0.584  Sum_probs=145.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|.+|||||||+++|..+.+...+.++.+..........++..+.+.+||++|++.+...+..++..++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999999999998888888888889999999999999999999999999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC-cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      |++++.++..+..|+..+.... ++.|+++||||.|+.+ +... .+...+++..++.|++|||++|.|++++|.+|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            9999999999999998877654 6899999999999975 3333 35668999999999999999999999999999998


Q ss_pred             Hh
Q 029077          171 LA  172 (199)
Q Consensus       171 ~~  172 (199)
                      +.
T Consensus       161 l~  162 (164)
T d1yzqa1         161 LP  162 (164)
T ss_dssp             SC
T ss_pred             hC
Confidence            75

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-35  Score=202.56  Aligned_cols=161  Identities=30%  Similarity=0.551  Sum_probs=139.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+|+|.+|||||||+++|..+.+...+.++.+.+........++..+.+.+||++|+..+...+..+++++|++++|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            48999999999999999999999999999999999899988888898999999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||++++++|+.+..|+..+.... .+.|+++||||.|+.+. .+. .+...+++..+++|++|||++|.|++++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~  162 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK  162 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             EeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHH
Confidence            99999999999999988776554 67889999999999763 333 4556899999999999999999999999999999


Q ss_pred             HHhC
Q 029077          170 KLAG  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+.+
T Consensus       163 ~i~~  166 (167)
T d1z08a1         163 RMIE  166 (167)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            8875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.9e-35  Score=201.46  Aligned_cols=162  Identities=28%  Similarity=0.517  Sum_probs=146.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      |+.+||+++|.+|||||||+++|..+.+...+.+|.+..........++....+.+||++|++.+......+++.++++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            57899999999999999999999999999999999998888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||++++++|..+..|...+.... .+.|+++||||.|+.+. ... .+...+++..+++|++|||++|.||+++|.+|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999988776654 67899999999999763 333 35568899999999999999999999999999


Q ss_pred             HHHHh
Q 029077          168 ARKLA  172 (199)
Q Consensus       168 ~~~~~  172 (199)
                      ++.+.
T Consensus       162 ~~~i~  166 (167)
T d1z0ja1         162 SRRIP  166 (167)
T ss_dssp             HHHCC
T ss_pred             HHhCC
Confidence            99873

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-35  Score=202.72  Aligned_cols=161  Identities=35%  Similarity=0.626  Sum_probs=145.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||+++|..+.+...+.++.+.+.......+++..+.+.+||++|++.+...+..++++++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            48999999999999999999999999888888998888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      +|+++..++..+..|...+.+.. .+.|+++|+||.|+.+. .+.. +...+++..++++++|||++|.|++++|.+|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~  164 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC  164 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             eecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence            99999999999999998887654 56899999999998763 3333 456789999999999999999999999999998


Q ss_pred             HHhC
Q 029077          170 KLAG  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+..
T Consensus       165 ~l~~  168 (171)
T d2ew1a1         165 RLIS  168 (171)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-35  Score=200.32  Aligned_cols=162  Identities=28%  Similarity=0.542  Sum_probs=144.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      |+.+||+++|++|||||||+++|+.+.+...+.++.+..... .....+..+.+.+||++|.+.+...+..+++.+++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            467999999999999999999999999998888898866554 4556778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||++++.+|+.+..|+..+.+..  +++|+++|+||.|+..+.... +...+++..+++|++|||++|.|++++|.+|
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999999988764  578999999999998766555 4457899999999999999999999999999


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      ++++.+
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998865

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-35  Score=199.64  Aligned_cols=159  Identities=34%  Similarity=0.576  Sum_probs=143.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|.+|||||||+++|+.+.+...+.++.+.+........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            47999999999999999999999999988888888888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||+++.+++..+..|...+.... ...|+++++||.|+.+.. .. .+...+++..++++++|||++|.|++++|..|++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~  163 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK  163 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999998887654 578999999999986533 33 3556889999999999999999999999999998


Q ss_pred             HH
Q 029077          170 KL  171 (199)
Q Consensus       170 ~~  171 (199)
                      .+
T Consensus       164 ~i  165 (166)
T d1z0fa1         164 KI  165 (166)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-35  Score=199.85  Aligned_cols=161  Identities=25%  Similarity=0.341  Sum_probs=142.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+|+|++|||||||+++|..+.+...+.+|.+.++ ......++..+.+.+||++|.+.+..++..++..+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            3568999999999999999999999999888899988764 355677888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||++++++|+.+..|+..+.+..  .+.|+++||||.|+... .+.. +...+++.++++|++|||++|.|++++|..
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            9999999999999999999887654  57899999999998753 4444 456899999999999999999999999999


Q ss_pred             HHHHHh
Q 029077          167 LARKLA  172 (199)
Q Consensus       167 i~~~~~  172 (199)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988763

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=7.1e-35  Score=200.31  Aligned_cols=162  Identities=30%  Similarity=0.529  Sum_probs=140.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+|+|++|||||||+++|..+.+...+.+|.+.++ ......++..+.+.+||++|.+.+...+..+++++|+++
T Consensus         2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i   80 (168)
T d1u8za_           2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeE
Confidence            4678999999999999999999999999999999988654 345667888999999999999999888899999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||+++..++..+..|+..+.+..  ++.|+++||||.|+.+. .+. .+...+++..++++++|||++|.|++++|.+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_          81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999999987764  57899999999998764 333 3456889999999999999999999999999


Q ss_pred             HHHHHhC
Q 029077          167 LARKLAG  173 (199)
Q Consensus       167 i~~~~~~  173 (199)
                      |++.+.+
T Consensus       161 l~~~i~~  167 (168)
T d1u8za_         161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9998764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-34  Score=200.32  Aligned_cols=168  Identities=33%  Similarity=0.588  Sum_probs=152.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+++|.+|||||||+++|..+.+...+.++.+.........+++..+.+.+||++|++.++..+..++.++|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            56799999999999999999999999999998888888888878888889999999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      +|||++++.++..+..|+..+.+..  ...|+++++||.|...+.+.. +...+++.++++++++||++|.|++++|+++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l  164 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  164 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999987754  468889999999988766655 4568899999999999999999999999999


Q ss_pred             HHHHhCCCCCc
Q 029077          168 ARKLAGDPNLH  178 (199)
Q Consensus       168 ~~~~~~~~~~~  178 (199)
                      ++.+.++|.+.
T Consensus       165 ~~~l~~~p~l~  175 (177)
T d1x3sa1         165 VEKIIQTPGLW  175 (177)
T ss_dssp             HHHHHTSGGGT
T ss_pred             HHHHccCcccc
Confidence            99999988663

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-35  Score=200.92  Aligned_cols=161  Identities=28%  Similarity=0.533  Sum_probs=142.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      |+.+||+++|++|||||||+++|+.+.+...+.++.+ +........++..+.+.+||++|++.+......+++++++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            5789999999999999999999999999888888887 455666777888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cc-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      +|||++++.++..+..|...+....  ++.|+++||||.|+.+. .. ..+...+++..+++|++|||++|.|++++|..
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            9999999999999999998887653  57999999999998753 33 33456888899999999999999999999999


Q ss_pred             HHHHHh
Q 029077          167 LARKLA  172 (199)
Q Consensus       167 i~~~~~  172 (199)
                      |++.+.
T Consensus       160 i~~~i~  165 (167)
T d1kaoa_         160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            999875

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=198.03  Aligned_cols=161  Identities=32%  Similarity=0.565  Sum_probs=140.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      |+.+||+++|.+|||||||+++|..+.+...+.++.+... ......++..+.+.+||++|+..+...+..+++++|++|
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            6789999999999999999999999999988888888554 455567888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccc-cH-HHHHHHHH-cCCcEEEeccCCCCChHHHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV-KA-KQVTFHRK-KNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~-~~-~~~~~~~~-~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +|||++++.+|+.+..|+..+.+..  ++.|+++||||.|+..... .. +...+++. .+++|++|||++|.|++++|.
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            9999999999999999999887653  5789999999999986433 33 34566666 578999999999999999999


Q ss_pred             HHHHHHh
Q 029077          166 YLARKLA  172 (199)
Q Consensus       166 ~i~~~~~  172 (199)
                      +|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998874

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-34  Score=197.99  Aligned_cols=160  Identities=30%  Similarity=0.504  Sum_probs=137.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      +.||+|+|++|||||||+++|..+.+...+.+|.+ +........++..+.+.+||++|++.+...+..+++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999999988888887 44555667788899999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHH-HHHHHHhhcCCCcEEEEEeCCCCCCcc-------------c-cHHHHHHHHHcC-CcEEEeccCC
Q 029077           93 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKN-LQYYEISAKS  156 (199)
Q Consensus        93 ~d~~~~~s~~~~~~-~~~~l~~~~~~~p~iiv~~K~D~~~~~-------------~-~~~~~~~~~~~~-~~~~~~s~~~  156 (199)
                      ||+++++||+++.. |...+....++.|+++|+||.|+.+..             + ..+...+++..+ .+|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999998776 555666666899999999999986421             2 224457788777 5799999999


Q ss_pred             CCChHHHHHHHHHHHhC
Q 029077          157 NYNFEKPFLYLARKLAG  173 (199)
Q Consensus       157 ~~~v~~~~~~i~~~~~~  173 (199)
                      |.|++++|+.+++++.+
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-34  Score=202.47  Aligned_cols=172  Identities=28%  Similarity=0.520  Sum_probs=151.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+.+..+.+.+||++|++.+...+..++++++++|+|
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v   85 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   85 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            38999999999999999999999999999999999888888888889999999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhh-cCCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~-~~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||+++++++..+..|...+.+. ..+.|+++|+||.|+.+. .... +...++...++.|+++||++|.|++++|.+|++
T Consensus        86 ~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~  165 (194)
T d2bcgy1          86 YDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR  165 (194)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             EeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHH
Confidence            9999999999999888877654 468899999999999873 3333 346788889999999999999999999999999


Q ss_pred             HHhCCCCCceecCCC
Q 029077          170 KLAGDPNLHFVESPA  184 (199)
Q Consensus       170 ~~~~~~~~~~~~~p~  184 (199)
                      .+.+......++++.
T Consensus       166 ~i~~~~~~~~~~~~~  180 (194)
T d2bcgy1         166 QIKESMSQQNLNETT  180 (194)
T ss_dssp             HHHHHCCHHHHHTTS
T ss_pred             HHHHHhhhcccCccc
Confidence            998766655555444

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=200.49  Aligned_cols=163  Identities=24%  Similarity=0.376  Sum_probs=139.1

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcE
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~   88 (199)
                      +....+||+|+|.+|||||||+++|+.+.+...+.+|.+ +.........+..+.+.+||++|++.+...+..+++++|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            356789999999999999999999999999988888887 4445566677888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHhcHH-HHHHHHHhhcCCCcEEEEEeCCCCCC-------------cccc-HHHHHHHHHcC-CcEEEe
Q 029077           89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVK-AKQVTFHRKKN-LQYYEI  152 (199)
Q Consensus        89 ~i~v~d~~~~~s~~~~~-~~~~~l~~~~~~~p~iiv~~K~D~~~-------------~~~~-~~~~~~~~~~~-~~~~~~  152 (199)
                      +++|||++++++|+++. .|...+....++.|+++|+||.|+.+             +.+. .+..++++..+ +.|++|
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~  163 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  163 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence            99999999999998765 46666666678999999999999864             2222 33457777776 789999


Q ss_pred             ccCCCCChHHHHHHHHHHHh
Q 029077          153 SAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~  172 (199)
                      ||++|.|++++|..+++++.
T Consensus       164 SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-35  Score=200.31  Aligned_cols=160  Identities=26%  Similarity=0.439  Sum_probs=138.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      +.+||+++|.+|||||||+++|+.+.+...+.+|.+... ......++..+.+.+||++|.+.+......+++.+|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            468999999999999999999999999888889988554 3455678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhh---cCCCcEEEEEeCCCCCC-ccccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~---~~~~p~iiv~~K~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |||+++++++..+..|...+.+.   ..++|+++||||.|+.+ +.+.. +..++++.++++|++|||++|.|++++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999999998877654   35789999999999975 34443 456889999999999999999999999999


Q ss_pred             HHHHHh
Q 029077          167 LARKLA  172 (199)
Q Consensus       167 i~~~~~  172 (199)
                      |++.+.
T Consensus       160 l~~~~~  165 (171)
T d2erxa1         160 LLNLEK  165 (171)
T ss_dssp             HHHTCC
T ss_pred             HHHHHH
Confidence            998654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=199.86  Aligned_cols=165  Identities=27%  Similarity=0.488  Sum_probs=141.0

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      .++.+||+|+|.+|||||||+++|+.+.+...+.+|.+ +........++..+.+.+||++|++.+...+..+++.+|++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            46789999999999999999999999999999888887 44555666788899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHH-HHHHHHhhcCCCcEEEEEeCCCCCCcc--------------ccHHHHHHHHHcC-CcEEEec
Q 029077           90 IIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEIS  153 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~p~iiv~~K~D~~~~~--------------~~~~~~~~~~~~~-~~~~~~s  153 (199)
                      ++|||+++..+|+.+.. |...+.....+.|+++|+||.|+.+..              ...+...+++..+ +.|++||
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            99999999999999875 666666667889999999999975421              1223456777766 7899999


Q ss_pred             cCCCCChHHHHHHHHHHHhCCC
Q 029077          154 AKSNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       154 ~~~~~~v~~~~~~i~~~~~~~~  175 (199)
                      |++|.||+++|..|++.+...|
T Consensus       161 Ak~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCCcCHHHHHHHHHHHHcCCC
Confidence            9999999999999999986543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-34  Score=199.68  Aligned_cols=165  Identities=24%  Similarity=0.420  Sum_probs=140.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      |+.+||+++|++|||||||+++|..+.+...+.+|.+. ........++..+.+.+||++|++++...+..+++++|+++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   79 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceee
Confidence            56799999999999999999999999999999999884 44555667778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHH-HHHHHHhhcCCCcEEEEEeCCCCCCc-------------ccc-HHHHHHHHHc-CCcEEEecc
Q 029077           91 IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKK-NLQYYEISA  154 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~p~iiv~~K~D~~~~-------------~~~-~~~~~~~~~~-~~~~~~~s~  154 (199)
                      +|||+++++||+++.. |...+....++.|+++|+||.|+.+.             .+. .+...+++.. +..|++|||
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            9999999999999976 55566666689999999999998642             122 2345677775 578999999


Q ss_pred             CCCCChHHHHHHHHHHHhCCCC
Q 029077          155 KSNYNFEKPFLYLARKLAGDPN  176 (199)
Q Consensus       155 ~~~~~v~~~~~~i~~~~~~~~~  176 (199)
                      ++|.|++++|+.+++.+.+.++
T Consensus       160 k~~~~V~e~f~~l~~~~~~~~~  181 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALEPPE  181 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTSCCS
T ss_pred             CCCcCHHHHHHHHHHHHhcCcC
Confidence            9999999999999998876543

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-34  Score=197.92  Aligned_cols=161  Identities=31%  Similarity=0.570  Sum_probs=138.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      .++||+|+|.+|||||||+++|..+.+...+.++.+ +.......+++..+.+.+||++|...+......+++.+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            458999999999999999999999998888888877 5556677788889999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i  167 (199)
                      |||++++.++..+..|...+....  .+.|+++|+||.|+.+. ... .+...+++..+++|++|||++|.|++++|..|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999998876653  57899999999998764 333 35568999999999999999999999999999


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      ++.+..
T Consensus       163 ~~~i~k  168 (171)
T d2erya1         163 VRVIRK  168 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-34  Score=197.17  Aligned_cols=158  Identities=19%  Similarity=0.264  Sum_probs=123.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||+++|....+. ...++.+ ......+..++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccC-CcCCeee-eeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            79999999999999999998765543 3334444 334455677888999999999999999999999999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      |++++.+++.+..|+..+....  .++|+++||||.|+.+. .+. .+...+++..+++|++|||++|.|++++|..|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            9999999999999999987664  46899999999999764 333 3456889999999999999999999999999998


Q ss_pred             HHhC
Q 029077          170 KLAG  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+..
T Consensus       160 ~i~~  163 (168)
T d2gjsa1         160 QIRL  163 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-34  Score=197.30  Aligned_cols=162  Identities=33%  Similarity=0.605  Sum_probs=145.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||+++|..+.+...+.++.+.+.........+..+.+.+||++|++.+...+..++++++++++|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            57999999999999999999999999999999999998888888888899999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      +|.++..++..+..|...+.+.. ++.|+++|+||.|+.+. .+.. +...+++..+++|++|||++|.|++++|..|++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~  165 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK  165 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999988876654 68999999999998764 4444 356888899999999999999999999999998


Q ss_pred             HHhCC
Q 029077          170 KLAGD  174 (199)
Q Consensus       170 ~~~~~  174 (199)
                      .+.++
T Consensus       166 ~i~~n  170 (170)
T d1r2qa_         166 KLPKN  170 (170)
T ss_dssp             TSCCC
T ss_pred             HHhhC
Confidence            87653

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-34  Score=196.61  Aligned_cols=160  Identities=34%  Similarity=0.596  Sum_probs=140.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+|+|++|||||||+++|+.+.+...+.++.+.+........++..+.+.+||++|++.+...+..+++.++++|+|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            48999999999999999999999999888888888888888888888899999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||++++.++..+..|+..+.... ++.|+++||||.|+.+.. .. .....+....+.++++|||++|.|++++|.++++
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~  163 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT  163 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHH
Confidence            99999999999999999887765 578999999999998643 33 3345778888899999999999999999999998


Q ss_pred             HHh
Q 029077          170 KLA  172 (199)
Q Consensus       170 ~~~  172 (199)
                      .+.
T Consensus       164 ~i~  166 (175)
T d2f9la1         164 EIY  166 (175)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-34  Score=197.30  Aligned_cols=161  Identities=32%  Similarity=0.600  Sum_probs=144.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+|+|.+|||||||+++|..+.+...+.++.+.+........++....+.+||++|++++...+..+++.++++++|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            38999999999999999999999999999999999888888888888899999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCcc-cc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||.++.+++..+..|...+.... ++.|+++|+||.|+.... .. .....+++..+++++++||++|.|++++|.++.+
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~  164 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR  164 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence            99999999999999998887664 579999999999986533 33 3445788899999999999999999999999999


Q ss_pred             HHhC
Q 029077          170 KLAG  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+.+
T Consensus       165 ~i~~  168 (174)
T d2bmea1         165 KILN  168 (174)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-34  Score=196.09  Aligned_cols=161  Identities=33%  Similarity=0.573  Sum_probs=139.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+|+|++|||||||+++++.+.+...+.++.+.+.........+..+.+.+||++|+..+...+..++..+|++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            37999999999999999999999998888888887777777777788889999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-ccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||++++.+|..+..|+..+.... ++.|+++|+||.|+... ... .+...+++..+++|+++||++|.|++++|.+|++
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~  162 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK  162 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             EeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999998887754 67999999999998763 333 3456888899999999999999999999999999


Q ss_pred             HHhC
Q 029077          170 KLAG  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+.+
T Consensus       163 ~i~~  166 (173)
T d2a5ja1         163 EIYR  166 (173)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-33  Score=194.02  Aligned_cols=161  Identities=28%  Similarity=0.553  Sum_probs=139.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      -+||+++|++|||||||+++|+.+.+...+.+|.+.++....+..++..+.+.+||+||++.+...+..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999999999999999988998899999999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccccHH-HHHHHHHcCCcEEEeccCCCCChHHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~~  170 (199)
                      ||.+++.+++.+..|...+.... ...|++++++|.|+.++....+ ...+++..++++++|||++|.|++++|.+|++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~  161 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL  161 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHH
Confidence            99999999999998887776665 5678889999999987655554 457888999999999999999999999999998


Q ss_pred             HhC
Q 029077          171 LAG  173 (199)
Q Consensus       171 ~~~  173 (199)
                      +.+
T Consensus       162 i~~  164 (166)
T d1g16a_         162 IQE  164 (166)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.8e-34  Score=194.97  Aligned_cols=161  Identities=34%  Similarity=0.603  Sum_probs=143.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      ..+||+++|++|||||||+++|+.+.+...+.++.+.++....+..++..+.+.+||++|++.+...+..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            36899999999999999999999999999999999988888888888899999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCC----cccc-HHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN----RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~----~~~~-~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      |||++++.++..+..|...+.... ...|+++++||.|+.+    +.+. .+..++++..+++|+++||++|.|++++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            999999999999999988766654 5789999999999854    2333 345688999999999999999999999999


Q ss_pred             HHHHHHh
Q 029077          166 YLARKLA  172 (199)
Q Consensus       166 ~i~~~~~  172 (199)
                      .|++.+.
T Consensus       162 ~i~~~i~  168 (170)
T d1ek0a_         162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHhc
Confidence            9987654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.9e-34  Score=197.01  Aligned_cols=161  Identities=30%  Similarity=0.581  Sum_probs=115.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|.+|||||||+++|+.+.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v   85 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   85 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence            47999999999999999999998888888889999898888888898899999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhh-cCCCcEEEEEeCCCCCCcc-c-cHHHHHHHHHcCCcEEEeccCCCCChHHHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~-~~~~p~iiv~~K~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~~  169 (199)
                      ||++++.++..+..|...+... ..+.|+++|+||.|..... . ..+...++...+++|++|||++|.|++++|.+|++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~  165 (173)
T d2fu5c1          86 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR  165 (173)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHH
T ss_pred             EECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999998888654 3679999999999998643 3 23456788889999999999999999999999999


Q ss_pred             HHhC
Q 029077          170 KLAG  173 (199)
Q Consensus       170 ~~~~  173 (199)
                      .+.+
T Consensus       166 ~i~~  169 (173)
T d2fu5c1         166 DIKA  169 (173)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-33  Score=191.89  Aligned_cols=162  Identities=32%  Similarity=0.644  Sum_probs=140.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      +-+||+|+|++|||||||+++|..+.+...+.+|.+..........++..+.+.+||++|..........++..++++++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   84 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   84 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence            45799999999999999999999999999999999888888888888889999999999999988888999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCccccHH-HHHHHHHc-CCcEEEeccCCCCChHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~~~~~~-~~~~~~~~-~~~~~~~s~~~~~~v~~~~  164 (199)
                      ++|.++..+++.+..|+..+....     ++.|+++||||.|+.++.+..+ ...+++.. .++|++|||++|.|++++|
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  164 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF  164 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred             EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999998876543     4689999999999987665554 45788775 4899999999999999999


Q ss_pred             HHHHHHHhC
Q 029077          165 LYLARKLAG  173 (199)
Q Consensus       165 ~~i~~~~~~  173 (199)
                      .+|++.+..
T Consensus       165 ~~l~~~il~  173 (174)
T d1wmsa_         165 EEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998864

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.1e-33  Score=194.18  Aligned_cols=163  Identities=35%  Similarity=0.665  Sum_probs=144.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      -+||+|+|.+|||||||+++|..+.+...+.+|.+.+.........+..+.+.+||++|...+...+..++..++++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            37999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCccccHHH-HHHH-HHcCCcEEEeccCCCCChHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQ-VTFH-RKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~~~~~~~-~~~~-~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +|.++..++..+..|+..+....     .+.|+++|+||+|+.++....+. ..++ ...++++++|||++|.|++++|.
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~  161 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ  161 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHH
Confidence            99999999999999998887653     36899999999999886665543 3454 44578999999999999999999


Q ss_pred             HHHHHHhCCC
Q 029077          166 YLARKLAGDP  175 (199)
Q Consensus       166 ~i~~~~~~~~  175 (199)
                      +|++.+.++.
T Consensus       162 ~l~~~i~~~~  171 (184)
T d1vg8a_         162 TIARNALKQE  171 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            9998876543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-33  Score=191.65  Aligned_cols=159  Identities=28%  Similarity=0.416  Sum_probs=135.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||+++|..+.+...+.||.+.++... ...++..+.+.+||++|...+. .+..+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            58999999999999999999999999999999998776544 4457788999999999988764 456678899999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCC-ChHHHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNY-NFEKPFLYL  167 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~-~v~~~~~~i  167 (199)
                      ||++++.++..+..|.......  .++.|+++||||.|+.+. .+.. +..++++..+++|++|||++|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            9999999999999887655443  368999999999999763 4443 4568999999999999999997 599999999


Q ss_pred             HHHHhC
Q 029077          168 ARKLAG  173 (199)
Q Consensus       168 ~~~~~~  173 (199)
                      ++.+..
T Consensus       160 ~~~i~~  165 (168)
T d2atva1         160 CREVRR  165 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=189.64  Aligned_cols=160  Identities=29%  Similarity=0.596  Sum_probs=133.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCC-ccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      .+||+++|++|||||||+++|+.+.+.. .+.++.+.+........++..+.+.+|||+|++.+...+..+++++|++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~   85 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence            5899999999999999999999888754 455667888888888889899999999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHHHHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~~~~i~  168 (199)
                      |||++++.++..+..|...+.... ...|+++|+||.|+.+. .+.. +...+++..+++|+++||++|.|++++|.+|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999999999888776654 57899999999999874 3333 45688899999999999999999999999999


Q ss_pred             HHHh
Q 029077          169 RKLA  172 (199)
Q Consensus       169 ~~~~  172 (199)
                      +.+.
T Consensus       166 ~~i~  169 (170)
T d2g6ba1         166 KELK  169 (170)
T ss_dssp             HHHH
T ss_pred             HHcC
Confidence            8875

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.4e-33  Score=191.69  Aligned_cols=163  Identities=27%  Similarity=0.564  Sum_probs=126.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEec-CcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      +-+||+++|++|||||||+++|..+.+...+.++.+.+......... .....+.+||++|++.+...+..+++.+++++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            35899999999999999999999999888888887766666555544 34578899999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc-----CCCcEEEEEeCCCCCCcc--ccH-HHHHHHHHcC-CcEEEeccCCCCChH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQ--VKA-KQVTFHRKKN-LQYYEISAKSNYNFE  161 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~-----~~~p~iiv~~K~D~~~~~--~~~-~~~~~~~~~~-~~~~~~s~~~~~~v~  161 (199)
                      +|||+++..+|+.+..|+..+....     .++|+++|+||+|+.+..  ... +..++++..+ ++|++|||++|.|++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            9999999999999999999887643     478999999999997632  333 4457787775 789999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 029077          162 KPFLYLARKLAGD  174 (199)
Q Consensus       162 ~~~~~i~~~~~~~  174 (199)
                      ++|.+|++++.++
T Consensus       161 e~f~~l~~~~l~~  173 (175)
T d1ky3a_         161 TAFEEIARSALQQ  173 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987643

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-33  Score=195.26  Aligned_cols=161  Identities=33%  Similarity=0.547  Sum_probs=138.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecC----------cEEEEEEEeCCCccccccccccc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC----------GKIRFYCWDTAGQEKFGGLRDGY   82 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~D~~g~~~~~~~~~~~   82 (199)
                      .+||+++|++|||||||+++|+.+.+...+.++.+.++......+++          ..+.+.+||++|++.+...+..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            48999999999999999999999999888888888776666654432          34789999999999999999999


Q ss_pred             ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCC
Q 029077           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNY  158 (199)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~  158 (199)
                      ++++|++|+|||++++.+++.+..|+..+....  ...|+++|+||.|+.+. .+.. +...+++.+++++++|||++|.
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~  164 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ  164 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            999999999999999999999999998776543  56889999999999763 3433 4568999999999999999999


Q ss_pred             ChHHHHHHHHHHHhC
Q 029077          159 NFEKPFLYLARKLAG  173 (199)
Q Consensus       159 ~v~~~~~~i~~~~~~  173 (199)
                      |++++|.+|++.+.+
T Consensus       165 ~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         165 NVEKAVETLLDLIMK  179 (186)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.1e-32  Score=188.83  Aligned_cols=160  Identities=23%  Similarity=0.370  Sum_probs=135.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      +.||+++|++|||||||+++|+.+.+...+.+|.+. ........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            579999999999999999999999999888888764 4444566788899999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHH-HHHHHhhcCCCcEEEEEeCCCCCC-------------cccc-HHHHHHHHHcC-CcEEEeccCC
Q 029077           93 FDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKN-------------RQVK-AKQVTFHRKKN-LQYYEISAKS  156 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~-~~~l~~~~~~~p~iiv~~K~D~~~-------------~~~~-~~~~~~~~~~~-~~~~~~s~~~  156 (199)
                      ||+++++||+.+..| ...+....++.|+++||||.|+..             +.+. .+...+++..+ ..|+||||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999988764 555666668999999999999854             1222 34457777776 5799999999


Q ss_pred             CC-ChHHHHHHHHHHHhC
Q 029077          157 NY-NFEKPFLYLARKLAG  173 (199)
Q Consensus       157 ~~-~v~~~~~~i~~~~~~  173 (199)
                      |. +++++|+.+++++..
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            97 599999999998875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.5e-32  Score=187.02  Aligned_cols=157  Identities=31%  Similarity=0.588  Sum_probs=136.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc-cccccccCCcEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAI   90 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i   90 (199)
                      +.+||+++|++|||||||+++|+.+.+...+.++.+................+.+||++|...... .+..+++++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            358999999999999999999999999999999988888888888888899999999999877654 4567889999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccHH-HHHHHHHcCCcEEEeccCC---CCChHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKS---NYNFEKP  163 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~---~~~v~~~  163 (199)
                      +|||++++++|+.+..|+..+.+..  ++.|+++||||.|+.+. .+..+ ...+++.++++|++|||++   +.||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            9999999999999999999987754  57899999999999763 44444 4689999999999999987   4599999


Q ss_pred             HHHHH
Q 029077          164 FLYLA  168 (199)
Q Consensus       164 ~~~i~  168 (199)
                      |.+|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-32  Score=187.45  Aligned_cols=160  Identities=20%  Similarity=0.310  Sum_probs=130.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCC-CccccceeEEEeeEEEEecCcEEEEEEEeCCC---cccccccccccccCCc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG---QEKFGGLRDGYYIHGQ   87 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g---~~~~~~~~~~~~~~~d   87 (199)
                      .-+||+++|++|||||||+++|..+.+. ....++.+.+.....+.+++..+.+.+||+++   ++++  ....+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            3589999999999999999998876554 33445666677777788888899999999765   3433  4566789999


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCc-cccH-HHHHHHHHcCCcEEEeccCCCCChHHH
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      ++|+|||+++..++..+..|...+....  ++.|+++|+||+|+.+. .+.. +...+++.++++|+++||++|.|++++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            9999999999999999999998887643  68999999999998763 3433 446788999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 029077          164 FLYLARKLAG  173 (199)
Q Consensus       164 ~~~i~~~~~~  173 (199)
                      |..|++.+..
T Consensus       160 f~~l~~~i~~  169 (172)
T d2g3ya1         160 FEGIVRQVRL  169 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=2.5e-31  Score=181.82  Aligned_cols=154  Identities=23%  Similarity=0.416  Sum_probs=129.2

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEE
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (199)
                      .+||+++|++|||||||+++|..+.+...+.+|.|........    .++.+.+||++|++.+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEE----TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeee----eeEEEEEeeccccccccccccccccccchhhcc
Confidence            5899999999999999999999999988888998877665443    568999999999999999999999999999999


Q ss_pred             EeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHH-----HHHHcCCcEEEeccCCCCChHHHHH
Q 029077           93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      ||+++..++.....|+..+...  .++.|+++|+||.|+.+.....+..+     .++..++.++++||++|.|++++|+
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~  157 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ  157 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHH
Confidence            9999999999988888777554  36899999999999976443333222     2233456799999999999999999


Q ss_pred             HHHHH
Q 029077          166 YLARK  170 (199)
Q Consensus       166 ~i~~~  170 (199)
                      +|++.
T Consensus       158 ~l~~~  162 (164)
T d1zd9a1         158 WLIQH  162 (164)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            99874

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=179.53  Aligned_cols=157  Identities=20%  Similarity=0.377  Sum_probs=126.8

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      .++.+||+++|+.|||||||+++|+.+.+.. +.++.+..+ ...+..++..+.+.+||++|+..+     .+++.+|++
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~   74 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV   74 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeE-EEEeecCceEEEEEEeeccccccc-----cccccccee
Confidence            3567999999999999999999999888754 445554443 455667888999999999997763     367889999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc----CCCcEEEEEeCCCCCC---ccccH-HHHHHHHH-cCCcEEEeccCCCCCh
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN---RQVKA-KQVTFHRK-KNLQYYEISAKSNYNF  160 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~----~~~p~iiv~~K~D~~~---~~~~~-~~~~~~~~-~~~~~~~~s~~~~~~v  160 (199)
                      |+|||+++++||+.+..|+..+....    ++.|+++|+||.|+..   +.+.. +...++.. .++.|++|||++|.|+
T Consensus        75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v  154 (175)
T d2bmja1          75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV  154 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred             EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence            99999999999999999999887653    4678999999988754   33333 34456544 5688999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 029077          161 EKPFLYLARKLAG  173 (199)
Q Consensus       161 ~~~~~~i~~~~~~  173 (199)
                      +++|..+++.+..
T Consensus       155 ~~~F~~l~~~i~~  167 (175)
T d2bmja1         155 DRVFQEVAQKVVT  167 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=1.4e-30  Score=178.13  Aligned_cols=157  Identities=17%  Similarity=0.278  Sum_probs=125.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      +.+||+++|++|||||||+++|....+ ....+|.|.......    ..++.+.+||++|++.++..+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~~~~----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKTLE----HRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEEEEE----ETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeeeecc----ccccceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            468999999999999999999765544 556677776554443    356899999999999999999999999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHH-----HHHcCCcEEEeccCCCCChHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      |+|+++..++.....++......  ..+.|+++|+||.|+.+.....+....     .+...+.+++|||++|.|++++|
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~  155 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI  155 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHH
Confidence            99999999988877766555432  368999999999999875444433322     12234579999999999999999


Q ss_pred             HHHHHHHhC
Q 029077          165 LYLARKLAG  173 (199)
Q Consensus       165 ~~i~~~~~~  173 (199)
                      ++|.+.+..
T Consensus       156 ~~l~~~i~~  164 (165)
T d1ksha_         156 DWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=9.5e-31  Score=180.81  Aligned_cols=158  Identities=17%  Similarity=0.309  Sum_probs=125.3

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCc
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d   87 (199)
                      ..+.+.+||+++|++|||||||+++|..+.+. ...++.|.+......    .++.+.+||++|++.++..+..++..+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~i~~----~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSVQS----QGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEEEE----TTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeeeEEEecc----CCeeEeEeeccccccchhHHHHHhhccc
Confidence            45567899999999999999999998776653 344555555444332    5689999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHH-----HHHHHcCCcEEEeccCCCCCh
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNF  160 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      ++++|||+++..++.++..|...+....  .++|+++|+||.|+.+.....+..     ..++...+.+++|||++|.|+
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv  165 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCH
Confidence            9999999999999999888877665543  578999999999997644333222     122334567999999999999


Q ss_pred             HHHHHHHHHH
Q 029077          161 EKPFLYLARK  170 (199)
Q Consensus       161 ~~~~~~i~~~  170 (199)
                      +++|++|++.
T Consensus       166 ~e~~~~l~~~  175 (176)
T d1fzqa_         166 QDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=2.1e-30  Score=179.99  Aligned_cols=159  Identities=19%  Similarity=0.301  Sum_probs=122.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEE
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~   89 (199)
                      ..+.+||+++|++|||||||+++|..+.+ ....+|.+........    ..+.+.+||++|++.++..+..++..++++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEE----TTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCC-CccccccceEEEEEee----CCEEEEEEecccccccchhHHhhhccceeE
Confidence            46689999999999999999999765544 3445666654443332    568899999999999999999999999999


Q ss_pred             EEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHH-----HHHHcCCcEEEeccCCCCChHH
Q 029077           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      ++|+|+++..++.+...|+..+....  .+.|+++|+||+|+.+.....+...     .+...++.+++|||++|.|+++
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  168 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITE  168 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHH
Confidence            99999999999998888876654432  5799999999999976443333221     2234456799999999999999


Q ss_pred             HHHHHHHHHhC
Q 029077          163 PFLYLARKLAG  173 (199)
Q Consensus       163 ~~~~i~~~~~~  173 (199)
                      +|++|++.+.+
T Consensus       169 ~~~~l~~~i~~  179 (182)
T d1moza_         169 GLDWLIDVIKE  179 (182)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=9.3e-30  Score=175.35  Aligned_cols=156  Identities=21%  Similarity=0.306  Sum_probs=122.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+++|++|||||||+++|..+.+ ....+|.+......    ....+.+.+||++|...++..+..+++.+++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~-~~~~~t~~~~~~~~----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETV----TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCC-EEEEEETTEEEEEE----EETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCC-CCccceeeeeEEEe----eccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            5679999999999999999999776554 33344555444333    335689999999999999999999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHH-----HHHHHcCCcEEEeccCCCCChHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +|+|+++..++..+..|+......  ..+.|+++++||.|+.+.....+..     ..+...++.+++|||++|.|++++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~  164 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  164 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence            999999999999888877766543  3679999999999998644433222     223334567999999999999999


Q ss_pred             HHHHHHHH
Q 029077          164 FLYLARKL  171 (199)
Q Consensus       164 ~~~i~~~~  171 (199)
                      |++|.+.+
T Consensus       165 ~~~l~~~~  172 (173)
T d1e0sa_         165 LTWLTSNY  172 (173)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhc
Confidence            99998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=4.5e-28  Score=164.45  Aligned_cols=153  Identities=21%  Similarity=0.231  Sum_probs=122.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (199)
                      +||+++|++|||||||+++|..+.+.........     .....+...+.+.+||++|...+......++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            6999999999999999999987776544433322     12233456789999999999998888899999999999999


Q ss_pred             eCCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHH-----HHHHHcCCcEEEeccCCCCChHHHHHH
Q 029077           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (199)
Q Consensus        94 d~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~v~~~~~~  166 (199)
                      |.++..++..+..|...+....  ...|+++++||.|+.+.....+..     .+++..++++++|||++|.|++++|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            9999999999888877766543  578999999999998754433322     234445678999999999999999999


Q ss_pred             HHHHH
Q 029077          167 LARKL  171 (199)
Q Consensus       167 i~~~~  171 (199)
                      |++.+
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=5.2e-26  Score=156.81  Aligned_cols=156  Identities=23%  Similarity=0.327  Sum_probs=115.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+.+||+|+|.+|||||||++++..+.+. ...++.+......    ......+.+||+++.+..+.....++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEI----VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEE----EETTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceeEEEE----eecceEEEEeccccccccccchhhhhccceeee
Confidence            56699999999999999999998876653 2233333222222    224688999999999998899999999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHH-----HHHcCCcEEEeccCCCCChHHH
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP  163 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~v~~~  163 (199)
                      +++|.++..++.....+.......  ....|+++|+||.|+.......+....     +...+++++++||++|.|++++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~  167 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG  167 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHH
Confidence            999999999888766655444332  368999999999999765543333222     2334567999999999999999


Q ss_pred             HHHHHHHH
Q 029077          164 FLYLARKL  171 (199)
Q Consensus       164 ~~~i~~~~  171 (199)
                      +++|.+++
T Consensus       168 ~~~L~~~l  175 (177)
T d1zj6a1         168 LEWMMSRL  175 (177)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=2.2e-26  Score=159.02  Aligned_cols=160  Identities=19%  Similarity=0.169  Sum_probs=110.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccc--------cccccC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYYIH   85 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~~~~~   85 (199)
                      -.|+|+|.+|||||||+|+|++... .......+++...........+..+.+||+||........        ..++.+
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~-~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~   84 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKV-APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD   84 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCc-eeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence            3799999999999999999876542 2222233333333333333355788999999975533322        234678


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HHHHHcC-CcEEEeccCCCCChHHH
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKN-LQYYEISAKSNYNFEKP  163 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~~~~~~-~~~~~~s~~~~~~v~~~  163 (199)
                      +|++++|+|++++..... ..|...+.....+.|+++|+||+|+.+..  .+.. .+....+ ..++++||++|.|++++
T Consensus        85 ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L  161 (178)
T d1wf3a1          85 VNAVVWVVDLRHPPTPED-ELVARALKPLVGKVPILLVGNKLDAAKYP--EEAMKAYHELLPEAEPRMLSALDERQVAEL  161 (178)
T ss_dssp             CSEEEEEEETTSCCCHHH-HHHHHHHGGGTTTSCEEEEEECGGGCSSH--HHHHHHHHHTSTTSEEEECCTTCHHHHHHH
T ss_pred             ccceeeeechhhhhcccc-cchhhheeccccchhhhhhhcccccccCH--HHHHHHHHhhcccCceEEEecCCCCCHHHH
Confidence            999999999987643322 34555665556789999999999996532  2222 2333333 56899999999999999


Q ss_pred             HHHHHHHHhCCCCC
Q 029077          164 FLYLARKLAGDPNL  177 (199)
Q Consensus       164 ~~~i~~~~~~~~~~  177 (199)
                      +++|++.+.+.|.+
T Consensus       162 ~~~i~~~lpe~p~~  175 (178)
T d1wf3a1         162 KADLLALMPEGPFF  175 (178)
T ss_dssp             HHHHHTTCCBCCCS
T ss_pred             HHHHHHhCCCCCCC
Confidence            99999988766544

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.93  E-value=1.5e-24  Score=148.02  Aligned_cols=158  Identities=21%  Similarity=0.336  Sum_probs=122.6

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      +.+||+++|.+|||||||+++|..+.+.. ..++.+......    ....+.+.+||.+|...............+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNVETV----TYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEEE----EETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcc-eecccceeeeee----ccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            35899999999999999999998877654 334544333322    2356788999999999988888899999999999


Q ss_pred             EEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHH-----HHHHHcCCcEEEeccCCCCChHHHH
Q 029077           92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      ++|+.+..++.....+.......  ....|+++++||.|+.+.....+..     .++....++++++||++|.|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            99999888877766654444332  3678999999999998765443332     2334456789999999999999999


Q ss_pred             HHHHHHHhCC
Q 029077          165 LYLARKLAGD  174 (199)
Q Consensus       165 ~~i~~~~~~~  174 (199)
                      ++|++.+.++
T Consensus       159 ~~l~~~l~~k  168 (169)
T d1upta_         159 EWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999988654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1e-24  Score=148.16  Aligned_cols=150  Identities=20%  Similarity=0.349  Sum_probs=117.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEEEEe
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (199)
                      ||+++|++|||||||+++|..+.+. ...++.+......    ...+..+.+||++|...+......++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEEL----AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEE----CCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEEEe----ccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            8999999999999999998877653 4566666554433    3356778899999999988999999999999999999


Q ss_pred             CCChhhHhcHHHHHHHHHhhc--CCCcEEEEEeCCCCCCccccHHHHHHH------------HHcCCcEEEeccCCCCCh
Q 029077           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFH------------RKKNLQYYEISAKSNYNF  160 (199)
Q Consensus        95 ~~~~~s~~~~~~~~~~l~~~~--~~~p~iiv~~K~D~~~~~~~~~~~~~~------------~~~~~~~~~~s~~~~~~v  160 (199)
                      .++..++.....|........  .+.|++++++|.|+.......+..+..            ....+.+++|||++|.|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv  156 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY  156 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSH
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCH
Confidence            999988887777666655443  578999999999997644333222211            122346999999999999


Q ss_pred             HHHHHHHHH
Q 029077          161 EKPFLYLAR  169 (199)
Q Consensus       161 ~~~~~~i~~  169 (199)
                      +|+|++|.+
T Consensus       157 ~e~~~~l~~  165 (166)
T d2qtvb1         157 LEAFQWLSQ  165 (166)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhC
Confidence            999999864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=3.6e-24  Score=147.95  Aligned_cols=160  Identities=13%  Similarity=0.046  Sum_probs=107.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc-------cccccccCCc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIHGQ   87 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~d   87 (199)
                      .|+++|.+|||||||+|+|.+....... ...+................+.+||+||......       .....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAP-YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECC-CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceec-cCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            4899999999999999997644332111 1111122222233344556789999999543211       1123367889


Q ss_pred             EEEEEEeCCChh--hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           88 CAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        88 ~~i~v~d~~~~~--s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      ++++++|.....  .......|+........++|+++|+||+|+.+.....+..+.....+.+++.+||++|.|++++++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~  161 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKE  161 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHH
Confidence            999999986542  223333343333223346899999999999876655555666677789999999999999999999


Q ss_pred             HHHHHHhCCC
Q 029077          166 YLARKLAGDP  175 (199)
Q Consensus       166 ~i~~~~~~~~  175 (199)
                      .|.+.+...+
T Consensus       162 ~i~~~l~~~~  171 (180)
T d1udxa2         162 ALHALVRSTP  171 (180)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHhhcC
Confidence            9999987654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.8e-25  Score=150.86  Aligned_cols=152  Identities=17%  Similarity=0.190  Sum_probs=110.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc--------ccccccC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH   85 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~   85 (199)
                      +||+++|++|||||||+|+|+..... ....+.+.+.......+...+..+.+||++|.......        ...++..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAA-IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   80 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCce-EeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence            79999999999999999998755432 12223333333333333445578889999996553322        1234678


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +|++++++|..+..++.....|...+.....+.|+++|+||+|+.+.....     .+..+.+++++||++|.|++++++
T Consensus        81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~-----~~~~~~~~~~iSAk~~~gi~~L~~  155 (161)
T d2gj8a1          81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM-----SEVNGHALIRLSARTGEGVDVLRN  155 (161)
T ss_dssp             CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE-----EEETTEEEEECCTTTCTTHHHHHH
T ss_pred             ccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHH-----HHhCCCcEEEEECCCCCCHHHHHH
Confidence            999999999998887777777776666666789999999999986533221     122456899999999999999999


Q ss_pred             HHHHHH
Q 029077          166 YLARKL  171 (199)
Q Consensus       166 ~i~~~~  171 (199)
                      +|++.+
T Consensus       156 ~l~~~l  161 (161)
T d2gj8a1         156 HLKQSM  161 (161)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            998764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.3e-25  Score=154.85  Aligned_cols=156  Identities=17%  Similarity=0.186  Sum_probs=119.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      +.+||+++|..|||||||+++|..+.+  .+.||.|......    ....+.+.+||++|++.++..+..+++.++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPF----DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEEE----ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEEE----eccceeeeeccccccccccccccccccccceeeE
Confidence            468999999999999999999987766  3678998765443    3467889999999999999999999999999999


Q ss_pred             EEeCCChhh-----------HhcHHHHHHHHHhhc-CCCcEEEEEeCCCCCCccc------------------cHHHHHH
Q 029077           92 MFDVTARLT-----------YKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV------------------KAKQVTF  141 (199)
Q Consensus        92 v~d~~~~~s-----------~~~~~~~~~~l~~~~-~~~p~iiv~~K~D~~~~~~------------------~~~~~~~  141 (199)
                      ++|.++..+           ++....|...+.... .+.|+++++||.|+.....                  ......+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            999887643           344556777766553 6899999999999732110                  0111111


Q ss_pred             ----HH------HcCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          142 ----HR------KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       142 ----~~------~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                          ..      ...+.+++|||++|.|++++|+.+.+.+.+
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence                11      123447899999999999999999888763

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.91  E-value=1.1e-23  Score=145.76  Aligned_cols=156  Identities=18%  Similarity=0.253  Sum_probs=111.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i   90 (199)
                      .+..||+++|++|||||||+++|..+.+.. ..++.+.+......    ....+..||+.+...+......+....++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEELTI----AGMTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEE----TTEEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcc-eecccccceeEEEe----cccccccccccchhhhhhHHhhhhcccceee
Confidence            567999999999999999999987665543 33444444333322    3467789999999988888899999999999


Q ss_pred             EEEeCCChhhHhcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCccccHHHHHHHH-----------------HcCCcEEE
Q 029077           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----------------KKNLQYYE  151 (199)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~~~~~~~~~~~-----------------~~~~~~~~  151 (199)
                      +++|+++...+.....+.......  ..+.|+++++||.|+.......+......                 ..++.+++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM  165 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEE
Confidence            999999998887766554444332  36899999999999876544333332221                 12345899


Q ss_pred             eccCCCCChHHHHHHHHHHH
Q 029077          152 ISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~  171 (199)
                      |||++|.|++|+|++|++.+
T Consensus       166 ~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         166 CSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CBTTTTBSHHHHHHHHHTTC
T ss_pred             EeCCCCCCHHHHHHHHHHhh
Confidence            99999999999999998754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=2.1e-25  Score=155.87  Aligned_cols=153  Identities=16%  Similarity=0.130  Sum_probs=110.7

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      +.+||+++|..|||||||+++|..+.++     +.|...    ..++...+.+.+||++|++.++..+..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~-----t~~~~~----~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGIVE----THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSC-----CCSEEE----EEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC-----CccEEE----EEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            4689999999999999999998865554     334322    2233467899999999999999999999999999999


Q ss_pred             EEeCCChhhHhc-----------HHHHHHHHHhh-cCCCcEEEEEeCCCCCCcc-----------------ccHHHH---
Q 029077           92 MFDVTARLTYKN-----------VPTWHRDLCRV-CENIPIVLCGNKVDVKNRQ-----------------VKAKQV---  139 (199)
Q Consensus        92 v~d~~~~~s~~~-----------~~~~~~~l~~~-~~~~p~iiv~~K~D~~~~~-----------------~~~~~~---  139 (199)
                      |+|+++..++..           ...|...+... ..+.|+++++||.|+....                 ...+..   
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            999998877633           22333333333 3578999999999852210                 001111   


Q ss_pred             --HHHHH------cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          140 --TFHRK------KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       140 --~~~~~------~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                        .+...      ..+.+++|||++|.|++++|+.+.+.+..
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence              11111      23457899999999999999999887753

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=5.5e-24  Score=146.88  Aligned_cols=162  Identities=19%  Similarity=0.112  Sum_probs=107.5

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCcc-----ccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccc
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYY   83 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~   83 (199)
                      ++.+.++|+++|++++|||||+|+|.........     ....|.+...........+..+.++|++|+..+.......+
T Consensus         1 ~~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           1 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhh
Confidence            3567899999999999999999998742211111     11222222222222233557788999999988887777888


Q ss_pred             cCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH---HH-HHHHH----cCCcEEEeccC
Q 029077           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QV-TFHRK----KNLQYYEISAK  155 (199)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~---~~-~~~~~----~~~~~~~~s~~  155 (199)
                      ..+|++++++|++++...+....+ ..+..  .++|+++|+||+|+.+......   .. .+.+.    ...+++++||+
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~--~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTGEHM-LILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             hhccccccccccccccchhhhhhh-hhhhh--cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            999999999999986443322222 22222  3899999999999986433221   11 22221    23579999999


Q ss_pred             CCCChHHHHHHHHHHHhC
Q 029077          156 SNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       156 ~~~~v~~~~~~i~~~~~~  173 (199)
                      +|.|++++++.|.+.+.+
T Consensus       158 ~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcCCc
Confidence            999999999999988764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=8e-24  Score=145.03  Aligned_cols=157  Identities=17%  Similarity=0.143  Sum_probs=103.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc---------ccccccccC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYIH   85 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~   85 (199)
                      .|+++|++|||||||+|+|++.. ........+.+.......+......+.+||++|.....         .....++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK-KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-cceecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            68999999999999999976433 22333445555555555556667889999999843211         112334678


Q ss_pred             CcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHHH
Q 029077           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (199)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~~  165 (199)
                      +|+++++.+.++..... ...+...+...  ++|+++|+||+|+.+........++.+.....++++||++|.|++++++
T Consensus        81 ad~i~~~~~~~~~~~~~-~~~~~~~l~~~--~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~  157 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKE-DESLADFLRKS--TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLE  157 (171)
T ss_dssp             CSEEEEEEETTTCCCHH-HHHHHHHHHHH--TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHH
T ss_pred             CcEEEEeeccccccccc-ccccccccccc--cccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHH
Confidence            99999999987654332 23344445544  7899999999999754332222344444455689999999999999999


Q ss_pred             HHHHHHhCCC
Q 029077          166 YLARKLAGDP  175 (199)
Q Consensus       166 ~i~~~~~~~~  175 (199)
                      +|.+.+.++.
T Consensus       158 ~i~~~l~e~~  167 (171)
T d1mkya1         158 TIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHhCCCCC
Confidence            9999887554

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.2e-23  Score=147.50  Aligned_cols=155  Identities=17%  Similarity=0.187  Sum_probs=106.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      +.+||+++|.+|||||||+++|.   +...+.||.|........    ....+.+||++|++.++..+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~~~~----~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDFEI----KNVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEEEEE----TTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEEEee----eeeeeeeecccceeeecccccccccccceeEE
Confidence            35899999999999999999973   455677899976555443    67899999999999999999999999999999


Q ss_pred             EEeCCChhhH----------hcHHHHHHHHHhh--cCCCcEEEEEeCCCCCCcc------------------ccHHHHH-
Q 029077           92 MFDVTARLTY----------KNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQ------------------VKAKQVT-  140 (199)
Q Consensus        92 v~d~~~~~s~----------~~~~~~~~~l~~~--~~~~p~iiv~~K~D~~~~~------------------~~~~~~~-  140 (199)
                      +++.++..++          .....++..+...  ..+.|+++++||.|+.++.                  ......+ 
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            9999876543          2222233333222  3689999999999973210                  0011111 


Q ss_pred             ---HHHH-------cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          141 ---FHRK-------KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       141 ---~~~~-------~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                         ....       ..+.++++||+++.+++++|+.+.+.+.+
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence               1111       12456789999999999999998887653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=4.7e-23  Score=139.57  Aligned_cols=150  Identities=20%  Similarity=0.157  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc---------ccccccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYI   84 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~~~   84 (199)
                      +||+++|.+|||||||+|+|.+... .......+.+.......+......+.+||+||......         .....+.
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE   79 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc-eeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence            6999999999999999999775432 22223333333333333344567889999999432111         1122357


Q ss_pred             CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCChHHHH
Q 029077           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~~~  164 (199)
                      .+|++++|+|++++.......     +.......++++++||.|+.+.....+.. .......+++++||++|.|+++++
T Consensus        80 ~ad~ii~v~d~~~~~~~~~~~-----~~~~~~~~~~i~~~~k~d~~~~~~~~~~~-~~~~~~~~~~~vSA~~g~gi~~L~  153 (160)
T d1xzpa2          80 KADIVLFVLDASSPLDEEDRK-----ILERIKNKRYLVVINKVDVVEKINEEEIK-NKLGTDRHMVKISALKGEGLEKLE  153 (160)
T ss_dssp             HCSEEEEEEETTSCCCHHHHH-----HHHHHTTSSEEEEEEECSSCCCCCHHHHH-HHHTCSTTEEEEEGGGTCCHHHHH
T ss_pred             hCCEEEEEEeCCCCcchhhhh-----hhhhcccccceeeeeeccccchhhhHHHH-HHhCCCCcEEEEECCCCCCHHHHH
Confidence            899999999999875543322     22233578899999999998755433332 223345789999999999999999


Q ss_pred             HHHHHH
Q 029077          165 LYLARK  170 (199)
Q Consensus       165 ~~i~~~  170 (199)
                      ++|.+.
T Consensus       154 ~~I~ke  159 (160)
T d1xzpa2         154 ESIYRE  159 (160)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998763

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=5.1e-23  Score=142.70  Aligned_cols=166  Identities=14%  Similarity=0.147  Sum_probs=100.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEee-EEEEecCcEEEEEEEeCCCcccccc----cc---cccccCC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP-LDFFTNCGKIRFYCWDTAGQEKFGG----LR---DGYYIHG   86 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~D~~g~~~~~~----~~---~~~~~~~   86 (199)
                      +|+++|++|||||||+|+|.+......  ...+.+... ...........+.+||+||......    ..   ...+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~--~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCcee--cCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            689999999999999999765432111  111111111 1111112234678999999532111    11   1224567


Q ss_pred             cEEEEEEeCCChhhHhcHHHH--HH-HHHh---hcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCCh
Q 029077           87 QCAIIMFDVTARLTYKNVPTW--HR-DLCR---VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (199)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~--~~-~l~~---~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v  160 (199)
                      +.++++++............+  .. ....   ...++|+++|+||+|+.+.....+........+.+++.+||++|.|+
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~~g~Gi  160 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGL  160 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTT
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhccCCcEEEEECCCCCCH
Confidence            888888876654332222211  11 1111   12468999999999998654322222222234678999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCceecC
Q 029077          161 EKPFLYLARKLAGDPNLHFVES  182 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~  182 (199)
                      +++++.|.+.+.+.|+....|+
T Consensus       161 ~~L~~~i~~~L~~~p~~~~~d~  182 (185)
T d1lnza2         161 RELLFEVANQLENTPEFPLYDE  182 (185)
T ss_dssp             HHHHHHHHHHHTSCCCCCSSCS
T ss_pred             HHHHHHHHHhhhhCCCCCCCCc
Confidence            9999999999988776655444

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=3.1e-21  Score=133.62  Aligned_cols=162  Identities=19%  Similarity=0.150  Sum_probs=99.0

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc----------
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG----------   76 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------   76 (199)
                      ++.....+||+++|.+|||||||+|+|++.... ......+.+.......+...+..+.++|++|.....          
T Consensus         2 ~p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~   80 (186)
T d1mkya2           2 KPEITDAIKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY   80 (186)
T ss_dssp             CCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCcc-eeecccccccccceeeeccCCceeeeeccCCccccccccccccccc
Confidence            344556799999999999999999998754321 111112222222222222234567888998854321          


Q ss_pred             --ccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc-cH-HHHHHHHH-----cCC
Q 029077           77 --GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KA-KQVTFHRK-----KNL  147 (199)
Q Consensus        77 --~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-~~-~~~~~~~~-----~~~  147 (199)
                        ......+..+|++++|+|+..+... ....+...+..  .+.|+|+|+||+|+..... .. +.....+.     ...
T Consensus        81 ~~~~~~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~--~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (186)
T d1mkya2          81 SNYRVVDSIEKADVVVIVLDATQGITR-QDQRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS  157 (186)
T ss_dssp             CCHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred             hhHHHHHHHhcCCEEEEeecccccchh-hHHHHHHHHHH--cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCC
Confidence              1223335789999999999865332 22333333433  3789999999999854222 22 22222221     235


Q ss_pred             cEEEeccCCCCChHHHHHHHHHHHh
Q 029077          148 QYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       148 ~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                      +++++||++|.|++++++.|.+++.
T Consensus       158 ~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         158 PLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            7999999999999999999988764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=8.2e-21  Score=133.71  Aligned_cols=116  Identities=20%  Similarity=0.250  Sum_probs=85.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc-ccccccccCCcEEEEEE
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAIIMF   93 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~v~   93 (199)
                      +|+++|++|||||||+++|+.+.+... .++.+.+....... ....+.+.+||++|++.++ ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            699999999999999999988776544 35655554443332 4456889999999998775 44567789999999999


Q ss_pred             eCCChhhH-hcHHHHHHHH-Hhh---cCCCcEEEEEeCCCCCCc
Q 029077           94 DVTARLTY-KNVPTWHRDL-CRV---CENIPIVLCGNKVDVKNR  132 (199)
Q Consensus        94 d~~~~~s~-~~~~~~~~~l-~~~---~~~~p~iiv~~K~D~~~~  132 (199)
                      |+++..++ .....++..+ ...   ..++|+++|+||+|+.+.
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            99987764 3444444333 222   246899999999999763

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=5.8e-21  Score=131.96  Aligned_cols=151  Identities=16%  Similarity=0.114  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc---------------ccc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------------GLR   79 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------------~~~   79 (199)
                      .|+++|.+|||||||+|+|.+....  ...+.|++.....+...    .+.++|+||.....               ...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~--~~~~~g~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR--RGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS--SSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce--eeCCCCEeecccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999998765442  22333444333333222    35789999952211               112


Q ss_pred             cccccCCcEEEEEEeCCChhhHhcH---------H-HHHHHHHhhcCCCcEEEEEeCCCCCCccc-cHHHHHHHHHc---
Q 029077           80 DGYYIHGQCAIIMFDVTARLTYKNV---------P-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKK---  145 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~---------~-~~~~~l~~~~~~~p~iiv~~K~D~~~~~~-~~~~~~~~~~~---  145 (199)
                      ....+.+|++++|+|++........         . .....+..  .++|+++|+||+|+.+... ...........   
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~  153 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS  153 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhhhHHHHHHHHHHHhccccc
Confidence            2335689999999998754322111         1 12223333  3899999999999764322 11111111111   


Q ss_pred             --CCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          146 --NLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       146 --~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                        ...++++||++|.|++++++.|.+.+.+
T Consensus       154 ~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         154 EIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence              1248899999999999999999988764

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=3e-20  Score=129.56  Aligned_cols=158  Identities=10%  Similarity=0.055  Sum_probs=92.5

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccc----------
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------   77 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------   77 (199)
                      -+.....+|+|+|.+|||||||+|+|.+...........+.+..........   .+.+.|+++......          
T Consensus        18 ~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~   94 (195)
T d1svia_          18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR   94 (195)
T ss_dssp             SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhh
Confidence            3344445899999999999999999875443333333333333333333222   233455554221111          


Q ss_pred             ---cccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH-HHHH----HcCCcE
Q 029077           78 ---LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHR----KKNLQY  149 (199)
Q Consensus        78 ---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~-~~~~----~~~~~~  149 (199)
                         .....+..++++++++|++.+..- .-..++..+...  ++|+++|+||+|+.+.....+.. .+.+    ....++
T Consensus        95 ~~~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~  171 (195)
T d1svia_          95 MIETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY--GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             HHhhhhccccchhhhhhhhhccccccc-cccccccccccc--cCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCE
Confidence               111234567999999998765321 122344444443  78999999999986544333322 2222    234578


Q ss_pred             EEeccCCCCChHHHHHHHHHHH
Q 029077          150 YEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      +.+||.+|.|+++++++|.+.+
T Consensus       172 ~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998876

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=4.1e-21  Score=136.50  Aligned_cols=154  Identities=18%  Similarity=0.184  Sum_probs=109.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcccccccccccccCCcEEEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~   91 (199)
                      ..+||+++|..|||||||+++|..+.    ..||.|........    +.+.+.+||++|++.++..+..++..++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~~~~~----~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFETKFQV----DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEEEEEE----TTEEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEEEEEE----CcEEEEEEecCccceeccchhhhcccccceEE
Confidence            35899999999999999999987543    45788866555443    56899999999999999999999999999999


Q ss_pred             EEeCCChhhH-------hcHHH----HHHHHHhh-cCCCcEEEEEeCCCCCCccc-----c-------------------
Q 029077           92 MFDVTARLTY-------KNVPT----WHRDLCRV-CENIPIVLCGNKVDVKNRQV-----K-------------------  135 (199)
Q Consensus        92 v~d~~~~~s~-------~~~~~----~~~~l~~~-~~~~p~iiv~~K~D~~~~~~-----~-------------------  135 (199)
                      ++|.++...+       ..+.+    |...+... ..++|+++++||+|+.+...     .                   
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~  156 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATP  156 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCC
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccc
Confidence            9998865322       11222    22223222 26799999999999743111     0                   


Q ss_pred             --------HHHH-----HHHHH--------cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          136 --------AKQV-----TFHRK--------KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       136 --------~~~~-----~~~~~--------~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                              .+..     .+.+.        ..+-.+++||.++.+++.+|..+.+.+..
T Consensus       157 ~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~  215 (221)
T d1azta2         157 EPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQR  215 (221)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHH
T ss_pred             cCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHH
Confidence                    0011     11111        11335689999999999999887776653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.83  E-value=1.4e-20  Score=134.17  Aligned_cols=155  Identities=20%  Similarity=0.212  Sum_probs=99.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCC----ccccceeEEEeeE------------EEEecCcEEEEEEEeCCCcccccccc
Q 029077           16 LVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTIGVEVHPL------------DFFTNCGKIRFYCWDTAGQEKFGGLR   79 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~~~l~D~~g~~~~~~~~   79 (199)
                      |+|+|.+++|||||+++|+......    ......+......            ...+......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999987532110    0000001000000            01123455678999999999998888


Q ss_pred             cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH------------------HHH--
Q 029077           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA------------------KQV--  139 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~------------------~~~--  139 (199)
                      ...+..+|++|+|+|+.++-..+. ...+..+..  .++|+++|+||+|+.+.....                  ...  
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~--~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  164 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTK  164 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc--CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHHH
Confidence            888899999999999987543332 222233333  388999999999986422100                  000  


Q ss_pred             ------HHHHH--------------cCCcEEEeccCCCCChHHHHHHHHHHHhC
Q 029077          140 ------TFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (199)
Q Consensus       140 ------~~~~~--------------~~~~~~~~s~~~~~~v~~~~~~i~~~~~~  173 (199)
                            .+...              ...+++.+||.+|.|++++++.|.....+
T Consensus       165 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         165 VYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ  218 (227)
T ss_dssp             HHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                  01100              11358999999999999999988876543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.82  E-value=2.3e-20  Score=130.19  Aligned_cols=160  Identities=16%  Similarity=0.087  Sum_probs=103.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCc-cc------cceeEEEeeEEE-----------------EecCcEEEEEE
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-YE------PTIGVEVHPLDF-----------------FTNCGKIRFYC   66 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~-~~------~~~~~~~~~~~~-----------------~~~~~~~~~~l   66 (199)
                      .+.++|+++|..++|||||+++|+....... ..      ...+........                 ........+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            4678999999999999999999864322111 00      011111111111                 01123467899


Q ss_pred             EeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH----HHHH
Q 029077           67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFH  142 (199)
Q Consensus        67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~----~~~~  142 (199)
                      +|+||+..|.......+..+|++++|+|+.++.......+.+..+... ...+++++.||+|+.+.....+.    .++.
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~-~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~  161 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENYRQIKEFI  161 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh-cCccceeeeecccchhhHHHHHHHHHHHHHh
Confidence            999999998888888888999999999998763222222222222222 24557888999999874332222    2333


Q ss_pred             HHc---CCcEEEeccCCCCChHHHHHHHHHHH
Q 029077          143 RKK---NLQYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       143 ~~~---~~~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      ...   .++++++||++|.|++++++.|.+.+
T Consensus       162 ~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         162 EGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            322   35799999999999999999887754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.82  E-value=2.7e-19  Score=125.62  Aligned_cols=164  Identities=16%  Similarity=0.120  Sum_probs=104.1

Q ss_pred             ccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCC---cccc----ceeEEEeeEEEEe----------------------c
Q 029077            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK---KYEP----TIGVEVHPLDFFT----------------------N   58 (199)
Q Consensus         8 ~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~---~~~~----~~~~~~~~~~~~~----------------------~   58 (199)
                      +...++++|+++|..++|||||+++|+......   ....    ..|..........                      .
T Consensus         3 ~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (205)
T d2qn6a3           3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP   82 (205)
T ss_dssp             CCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCC
T ss_pred             CCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccc
Confidence            445778999999999999999999987422110   0000    0111111100000                      0


Q ss_pred             CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH
Q 029077           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ  138 (199)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~  138 (199)
                      .....+.+.|+||+..|.......+..+|++|+|+|+.++-.-......+ .+.......|+|++.||+|+.+.......
T Consensus        83 ~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~-~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~  161 (205)
T d2qn6a3          83 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHF-VALGIIGVKNLIIVQNKVDVVSKEEALSQ  161 (205)
T ss_dssp             EEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHH-HHHHHTTCCCEEEEEECGGGSCHHHHHHH
T ss_pred             cceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHH-HHHHHcCCceeeeccccCCCccchHHHHH
Confidence            12346899999999998887777788999999999998753111111122 22222234688999999999764332222


Q ss_pred             ----HHHHHHc---CCcEEEeccCCCCChHHHHHHHHHHHh
Q 029077          139 ----VTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKLA  172 (199)
Q Consensus       139 ----~~~~~~~---~~~~~~~s~~~~~~v~~~~~~i~~~~~  172 (199)
                          ..+....   .++++++||++|.|++++++.|.+.+.
T Consensus       162 ~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         162 YRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence                1222222   367999999999999999998887654

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.81  E-value=3.1e-20  Score=129.03  Aligned_cols=159  Identities=14%  Similarity=0.042  Sum_probs=109.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC-----C--C-------CCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTG-----E--F-------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG   76 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~-----~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~   76 (199)
                      +++++|+++|..++|||||+++|+..     .  .       ........|.+.......+......+.++|+||+..|.
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            36799999999999999999997631     0  0       01122345666666666777777899999999999988


Q ss_pred             ccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH-----HHHHHHHHcC-----
Q 029077           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-----KQVTFHRKKN-----  146 (199)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~-----~~~~~~~~~~-----  146 (199)
                      ......+..+|++++|+|+.++..-+...  +-.+.......|+|++.||+|+.+.....     +...+....+     
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~QT~~--~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQTRE--HLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHHHH--HHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchhHHH--HHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            88888889999999999999764333222  22222223456889999999986532211     2223333333     


Q ss_pred             CcEEEeccCCC----------CChHHHHHHHHHHH
Q 029077          147 LQYYEISAKSN----------YNFEKPFLYLARKL  171 (199)
Q Consensus       147 ~~~~~~s~~~~----------~~v~~~~~~i~~~~  171 (199)
                      ++++.+|+++|          .++.++++.|.+.+
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~i  193 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHhhC
Confidence            56999999988          47788777765543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.9e-18  Score=118.66  Aligned_cols=159  Identities=18%  Similarity=0.159  Sum_probs=97.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccc---------cccccccccc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGYYI   84 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~~   84 (199)
                      -.|+|+|.+|||||||+|+|.+..... .....++...............+..+|++|...         ..........
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISI-TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG   84 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEE-CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCcee-eccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchh
Confidence            358999999999999999987544211 111111121222222222345566788877432         1112233345


Q ss_pred             CCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCcccc--HHHHHHHHHcC-CcEEEeccCCCCChH
Q 029077           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKN-LQYYEISAKSNYNFE  161 (199)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~--~~~~~~~~~~~-~~~~~~s~~~~~~v~  161 (199)
                      .+++++++.|..+...  ....+...+..  ...|.++|+||.|.......  .....+....+ .+++++||++|.|++
T Consensus        85 ~~~~~l~~~d~~~~~~--~~~~~~~~l~~--~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~  160 (179)
T d1egaa1          85 DVELVIFVVEGTRWTP--DDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVD  160 (179)
T ss_dssp             CEEEEEEEEETTCCCH--HHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred             hcceeEEEEecCccch--hHHHHHHHhhh--ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHH
Confidence            6788888888765332  22223333333  36788999999997654322  22234444444 579999999999999


Q ss_pred             HHHHHHHHHHhCCCCC
Q 029077          162 KPFLYLARKLAGDPNL  177 (199)
Q Consensus       162 ~~~~~i~~~~~~~~~~  177 (199)
                      ++++.|.+.+.+.+..
T Consensus       161 ~L~~~i~~~lpe~~~~  176 (179)
T d1egaa1         161 TIAAIVRKHLPEATHH  176 (179)
T ss_dssp             HHHHHHHTTCCBCCCS
T ss_pred             HHHHHHHHhCCCCCCC
Confidence            9999999988777653

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.75  E-value=1.5e-17  Score=117.52  Aligned_cols=150  Identities=19%  Similarity=0.214  Sum_probs=97.1

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhc--CCCCCc-----------------------------cccceeEEEeeEEEEec
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK-----------------------------YEPTIGVEVHPLDFFTN   58 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   58 (199)
                      .+..+||+++|..++|||||+.+|+.  +.....                             .....|.+.......+.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            45788999999999999999999863  211100                             00111222222222333


Q ss_pred             CcEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccc--c
Q 029077           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV--K  135 (199)
Q Consensus        59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~--~  135 (199)
                      .....+.++|+||+..|.......+..+|++++|+|+.++..-+....  -.+... .+++ +|++.||+|+.+...  .
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~--~~~~~~-~gv~~iiv~vNK~D~~~~~~~~~  162 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH--SYIASL-LGIKHIVVAINKMDLNGFDERVF  162 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH--HHHHHH-TTCCEEEEEEECTTTTTSCHHHH
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH--HHHHHH-cCCCEEEEEEEccccccccceeh
Confidence            455788999999999999888888899999999999987644332222  222222 2544 788889999976321  1


Q ss_pred             ----HHHHHHHHHcCC-----cEEEeccCCCCChHH
Q 029077          136 ----AKQVTFHRKKNL-----QYYEISAKSNYNFEK  162 (199)
Q Consensus       136 ----~~~~~~~~~~~~-----~~~~~s~~~~~~v~~  162 (199)
                          .+...+....++     +++++||++|.|+.+
T Consensus       163 ~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         163 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             hhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence                122344444443     578999999999843

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=6.7e-18  Score=118.07  Aligned_cols=143  Identities=16%  Similarity=0.094  Sum_probs=94.8

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcC--------CCCC-------ccccceeEEEeeEEEEecCcEEEEEEEeCCCcccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTG--------EFEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~--------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (199)
                      +++++|+++|+.++|||||+++|+..        ....       ......|++.......+...+..+.++||||+..|
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence            36799999999999999999998621        1100       00111245544455555666778899999999999


Q ss_pred             cccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCcccc-----HHHHHHHHHcC---
Q 029077           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKKN---  146 (199)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~~-----~~~~~~~~~~~---  146 (199)
                      -......+..+|++|+|+|+.++...+....|.. ...  .++| ++++.||+|+.+....     .+...+....+   
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~-~~~--~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  157 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQTREHILL-ARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  157 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHH-HHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHH-HHH--cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            8888888899999999999998765554333332 222  2665 6778999998653211     12223333333   


Q ss_pred             --CcEEEeccCC
Q 029077          147 --LQYYEISAKS  156 (199)
Q Consensus       147 --~~~~~~s~~~  156 (199)
                        ++++..|+..
T Consensus       158 ~~i~~i~~sa~~  169 (204)
T d2c78a3         158 DEVPVIRGSALL  169 (204)
T ss_dssp             TTSCEEECCHHH
T ss_pred             ccceeeeeechh
Confidence              4578877653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.7e-17  Score=116.41  Aligned_cols=114  Identities=17%  Similarity=0.134  Sum_probs=79.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccccc----ccCCcEE
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY----YIHGQCA   89 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~----~~~~d~~   89 (199)
                      -+|+++|++|||||||+|+|.++.+.+..      +.......+...+..+.+||+||+..+......+    ...++.+
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~~t------t~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRPTV------VSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL   77 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCCBC------CCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCeE------EecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence            38999999999999999999877654321      1222233445566778999999988766555443    4556888


Q ss_pred             EEEEeCCC-hhhHhcHHHHHHHHH----hh-cCCCcEEEEEeCCCCCCcc
Q 029077           90 IIMFDVTA-RLTYKNVPTWHRDLC----RV-CENIPIVLCGNKVDVKNRQ  133 (199)
Q Consensus        90 i~v~d~~~-~~s~~~~~~~~~~l~----~~-~~~~p~iiv~~K~D~~~~~  133 (199)
                      ++++|+.+ ..++.....|+..+.    .. ..++|+++|+||+|+.+..
T Consensus        78 i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          78 IFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            89998764 455555555554332    22 2579999999999997643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=8.2e-17  Score=110.87  Aligned_cols=161  Identities=12%  Similarity=-0.026  Sum_probs=83.0

Q ss_pred             CccCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeE-EEEecCcEEEEEEEeCCCcccccc-------c
Q 029077            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL-DFFTNCGKIRFYCWDTAGQEKFGG-------L   78 (199)
Q Consensus         7 ~~~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~D~~g~~~~~~-------~   78 (199)
                      +.+....++|+++|.+|||||||+|+|......... ...+.+.... ..........+..++.++......       .
T Consensus        10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_          10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLART-SKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             GSSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred             HCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEee-cccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence            345677899999999999999999997654432222 2222222222 222222223333333322111111       0


Q ss_pred             c---cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH----HHHHHHc--CCcE
Q 029077           79 R---DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFHRKK--NLQY  149 (199)
Q Consensus        79 ~---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~----~~~~~~~--~~~~  149 (199)
                      .   .........++.+.+........ ...+...+..  ...++++++||.|+.+.......    .+.....  ..++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  165 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             hhhhhhhhhheeEEEEeecccccchhH-HHHHHHHhhh--ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcE
Confidence            1   11123344555555555432211 2223333333  37889999999998764332221    1222222  3468


Q ss_pred             EEeccCCCCChHHHHHHHHHHH
Q 029077          150 YEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      +.+||++|.|++++++.|.+.+
T Consensus       166 i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         166 ETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999887654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.69  E-value=4.4e-17  Score=115.62  Aligned_cols=151  Identities=21%  Similarity=0.231  Sum_probs=95.3

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeeEEEEecCcEE
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCGKI   62 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~   62 (199)
                      ++++|+++|..++|||||+.+|+.  +....                           ......|.+.......++...+
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            579999999999999999998753  11100                           0111234444444444556678


Q ss_pred             EEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHh-----cHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccH-
Q 029077           63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK-----NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-  136 (199)
Q Consensus        63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-----~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~-  136 (199)
                      .+.++|+||+..|-..+...+..+|++|+|+|+.++...+     ....-.-.+.......++|++.||+|+....... 
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~  161 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK  161 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccHH
Confidence            8999999999999999999999999999999999864221     1111111222223455688899999986522221 


Q ss_pred             -------HHHHHHHHc-----CCcEEEeccCCCCChHH
Q 029077          137 -------KQVTFHRKK-----NLQYYEISAKSNYNFEK  162 (199)
Q Consensus       137 -------~~~~~~~~~-----~~~~~~~s~~~~~~v~~  162 (199)
                             +...+....     .++++++||.+|.|+.+
T Consensus       162 ~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         162 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence                   112233333     24588999999999853

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1.2e-16  Score=113.97  Aligned_cols=152  Identities=18%  Similarity=0.197  Sum_probs=100.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeeEEEEecCc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG   60 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   60 (199)
                      +.++++|+++|..++|||||+.+|+.  +....                           ......|.+.......+...
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            45679999999999999999999862  21110                           00122344444444445556


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhH-----hcHHHHHHHHHhhcCCCc-EEEEEeCCCCCCccc
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY-----KNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV  134 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-----~~~~~~~~~l~~~~~~~p-~iiv~~K~D~~~~~~  134 (199)
                      +.++.+.|+||+..|...+...+..+|++|+|+|+.++..-     +.-...+-.+.... ++| +|++.||+|+.+...
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~-gv~~iiv~iNKmD~~~~d~  161 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL-GVRQLIVAVNKMDSVKWDE  161 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT-TCCEEEEEEECGGGGTTCH
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc-CCCeEEEEEECCCCCCCCH
Confidence            78999999999999999988899999999999999876321     11111111222222 554 788899999875221


Q ss_pred             ------cHHHHHHHHHcC-----CcEEEeccCCCCChHH
Q 029077          135 ------KAKQVTFHRKKN-----LQYYEISAKSNYNFEK  162 (199)
Q Consensus       135 ------~~~~~~~~~~~~-----~~~~~~s~~~~~~v~~  162 (199)
                            ..+...+....+     ++++.+|+..|.|+-+
T Consensus       162 ~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         162 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence                  122234444443     5689999999988744

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=2.4e-16  Score=114.10  Aligned_cols=134  Identities=19%  Similarity=0.213  Sum_probs=95.1

Q ss_pred             Cce-EEEEEcCCCCCHHHHHHHHhc--CCCCC--------------ccccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077           12 PSF-KLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        12 ~~~-~i~viG~~~~GKStli~~l~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (199)
                      ..+ +|+++|+.|+|||||+.+++.  +....              ......|.+.......+..++..++++||||+..
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVD   83 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhh
Confidence            345 699999999999999999763  11110              0011123333333444555778999999999999


Q ss_pred             ccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCc
Q 029077           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ  148 (199)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~  148 (199)
                      |.......++.+|++|+|+|+.++-..+....|..- ..  .++|.++++||+|........-..++...++..
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a-~~--~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~  154 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EK--YKVPRIAFANKMDKTGADLWLVIRTMQERLGAR  154 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHH-HT--TTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCC
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHH-HH--cCCCEEEEEecccccccccchhHHHHHHHhCCC
Confidence            999999999999999999999988665555555332 22  389999999999998876655555555555544

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.66  E-value=2.8e-16  Score=112.57  Aligned_cols=154  Identities=18%  Similarity=0.174  Sum_probs=84.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhc--CCCCC---------------------------ccccceeEEEeeEEEEecCc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG   60 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   60 (199)
                      ..++++|+++|..++|||||+.+|+.  +....                           ......|.+.......+...
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            35678999999999999999999752  11100                           11112222222222333445


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhH-----h-cHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY-----K-NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-----~-~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~  134 (199)
                      ...+.+.|+||+..|..........+|++++|+|+.++..-     . .....+. +.....-.+++++.||+|+.....
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~-l~~~~~i~~iiv~iNKmD~~~~~~  179 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LARTQGINHLVVVINKMDEPSVQW  179 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHH-HHHHcCCCeEEEEEEcCCCCccch
Confidence            67899999999999999888889999999999999876321     1 1222222 222222335788899999864322


Q ss_pred             cH----HH----HHHHHHc-------CCcEEEeccCCCCChHHHH
Q 029077          135 KA----KQ----VTFHRKK-------NLQYYEISAKSNYNFEKPF  164 (199)
Q Consensus       135 ~~----~~----~~~~~~~-------~~~~~~~s~~~~~~v~~~~  164 (199)
                      .+    +.    ..+....       .++++++||++|.|+.+++
T Consensus       180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            11    11    1111111       2468999999999997643

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=6.4e-15  Score=112.64  Aligned_cols=160  Identities=16%  Similarity=0.183  Sum_probs=92.3

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccc---cceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc-----c
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE---PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD-----G   81 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-----~   81 (199)
                      +...++|+|+|.+|||||||+|.|++........   ...+++.....+... ....+.+|||||.........     .
T Consensus        53 ~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             HHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHh
Confidence            3457999999999999999999987643322111   122233332333222 233578999999654332222     2


Q ss_pred             cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCC--------ccccH-----H----HHHHHHH
Q 029077           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKA-----K----QVTFHRK  144 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~--------~~~~~-----~----~~~~~~~  144 (199)
                      .+..+|.++++.|..-...-.   .+...+...  ++|+++|.||+|...        .....     +    .......
T Consensus       132 ~~~~~d~~l~~~~~~~~~~d~---~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~  206 (400)
T d1tq4a_         132 KFYEYDFFIIISATRFKKNDI---DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  206 (400)
T ss_dssp             TGGGCSEEEEEESSCCCHHHH---HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCCCCHHHH---HHHHHHHHc--CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHH
Confidence            356789888887754332222   233344443  899999999999521        00011     1    1112222


Q ss_pred             cCC---cEEEeccCC--CCChHHHHHHHHHHHhCCC
Q 029077          145 KNL---QYYEISAKS--NYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       145 ~~~---~~~~~s~~~--~~~v~~~~~~i~~~~~~~~  175 (199)
                      .+.   ++|.+|..+  ..++.++.+.+.+.+.+..
T Consensus       207 ~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         207 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             cCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence            232   477777653  4589999998888776543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.58  E-value=3.8e-15  Score=107.45  Aligned_cols=113  Identities=21%  Similarity=0.262  Sum_probs=80.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC--CCCCc-----------c---ccceeEEEeeEEEEecCcEEEEEEEeCCCccccccc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTG--EFEKK-----------Y---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~--~~~~~-----------~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~   78 (199)
                      +|+++|+.++|||||+.+++..  .....           +   ....+.+.......+..++..++++||||+..|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            6999999999999999998631  11100           0   001222333223333445678999999999999999


Q ss_pred             ccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (199)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~  130 (199)
                      ....++.+|++|+|+|+.++-..+....|.. ..+  .++|.++++||+|..
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t~~~~~~-~~~--~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGTERAWTV-AER--LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH--TTCCEEEEEECGGGC
T ss_pred             hhhhhcccCceEEEeeccCCccchhHHHHHh-hhh--ccccccccccccccc
Confidence            9999999999999999998765555444443 222  389999999999974

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=2.5e-14  Score=106.48  Aligned_cols=116  Identities=17%  Similarity=0.284  Sum_probs=81.1

Q ss_pred             CceE-EEEEcCCCCCHHHHHHHHhc--CCCCC------cc------ccceeEEEeeEE--EE--------------ecCc
Q 029077           12 PSFK-LVIVGDGGTGKTTFVKRHLT--GEFEK------KY------EPTIGVEVHPLD--FF--------------TNCG   60 (199)
Q Consensus        12 ~~~~-i~viG~~~~GKStli~~l~~--~~~~~------~~------~~~~~~~~~~~~--~~--------------~~~~   60 (199)
                      ..+| |+|+|+.++|||||+.+|+.  +....      .+      ....|.+.....  ..              .+++
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            4564 99999999999999999862  11100      00      001122211111  11              1346


Q ss_pred             EEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCC
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~  130 (199)
                      .+.++++||||+..|.......++.+|++++|+|+.++-..+....|.....   .+.|.++++||+|..
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH---cCCCeEEEEECcccc
Confidence            7889999999999999999999999999999999998876665555544332   389999999999964

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.50  E-value=6.4e-14  Score=101.02  Aligned_cols=121  Identities=13%  Similarity=0.091  Sum_probs=72.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCccccccccc---------
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD---------   80 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~---------   80 (199)
                      ....++|+++|.+|||||||+|.+++.... ...+..+++...........+..+.++||||.........         
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~-~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCce-eecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            467899999999999999999998764432 2222333343333333333456899999999643211111         


Q ss_pred             ccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcC---CCcEEEEEeCCCCCC
Q 029077           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN  131 (199)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~p~iiv~~K~D~~~  131 (199)
                      ......+++++|++++...--..-...+..+...+.   -.++++|+||.|...
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence            112356888899887653211111222333333222   357899999999864

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.33  E-value=4.3e-13  Score=95.69  Aligned_cols=110  Identities=16%  Similarity=0.049  Sum_probs=64.6

Q ss_pred             EEEEEEEeCCCccccccccccc-----ccCCcEEEEEEeCCCh---hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGY-----YIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~-----~~~~d~~i~v~d~~~~---~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~  132 (199)
                      ...+.+.|+||+..+.......     ....+.+++++|+...   ..+..... ........-..|.+++.||.|+...
T Consensus        94 ~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l-~~~~~~~~~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          94 ENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRF-FALLIDLRLGATTIPALNKVDLLSE  172 (244)
T ss_dssp             HCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHH-HHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred             ccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHH-HHHHHHHHhCCCceeeeeccccccH
Confidence            3457889999986543322211     2345688889887532   22221111 1111111127899999999998753


Q ss_pred             cccHHHH----------------------------HHHH--HcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077          133 QVKAKQV----------------------------TFHR--KKNLQYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       133 ~~~~~~~----------------------------~~~~--~~~~~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      .......                            ....  ...++++++||.+|+|+++++..|.++.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            2111000                            0001  1346799999999999999999887754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.6e-11  Score=90.91  Aligned_cols=83  Identities=11%  Similarity=-0.041  Sum_probs=50.9

Q ss_pred             cccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHH----HHHHH-------HcCCcEE
Q 029077           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFHR-------KKNLQYY  150 (199)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~----~~~~~-------~~~~~~~  150 (199)
                      +...+|.+++|.+.......+.....+-++       +-++|+||.|..........    .....       .+..+++
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~-------aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~  236 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKGLMEV-------ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL  236 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHHHHHH-------CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEE
T ss_pred             hhhccceEEEEecCCCchhhhhhchhhhcc-------ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeE
Confidence            345689999998877666555544443333       33688999999864322211    11111       2234699


Q ss_pred             EeccCCCCChHHHHHHHHHHH
Q 029077          151 EISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       151 ~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      .|||.+|.|++++++.|.+..
T Consensus       237 ~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         237 TCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             ECBGGGTBSHHHHHHHHHHHH
T ss_pred             EEEeeCCCCHHHHHHHHHHHH
Confidence            999999999999999997644

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.20  E-value=2.8e-11  Score=89.43  Aligned_cols=100  Identities=9%  Similarity=0.025  Sum_probs=58.7

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHH--
Q 029077           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV--  139 (199)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~--  139 (199)
                      +.+.++.|.|.-...   .....-+|.+++|.....+...+..+.-+-       ...-++|+||+|+.+........  
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gil-------E~aDi~vvNKaD~~~~~~~~~~~~~  213 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIF-------ELADMIAVNKADDGDGERRASAAAS  213 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHH-------HHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHh-------hhhheeeEeccccccchHHHHHHHH
Confidence            455566666532211   222345899999999887755443222222       22337899999987643322211  


Q ss_pred             HHHH----------HcCCcEEEeccCCCCChHHHHHHHHHHH
Q 029077          140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKL  171 (199)
Q Consensus       140 ~~~~----------~~~~~~~~~s~~~~~~v~~~~~~i~~~~  171 (199)
                      .+..          .+..+++.+||.+|.|+++++++|.+..
T Consensus       214 ~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         214 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            1111          1345699999999999999999997654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=3.5e-10  Score=79.25  Aligned_cols=42  Identities=19%  Similarity=0.328  Sum_probs=25.6

Q ss_pred             EEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          150 YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       150 ~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .....++|..-+.  -.|++++..+|+++++|||+.+     +|+..+.
T Consensus       126 ~~~~~LSGGqkQR--vaiAraL~~~P~illlDEPts~-----LD~~~~~  167 (232)
T d2awna2         126 RKPKALSGGQRQR--VAIGRTLVAEPSVFLLDEPLSN-----LDAALRV  167 (232)
T ss_dssp             ----------------CHHHHHHTCCSEEEEESTTTT-----SCHHHHH
T ss_pred             CChhhCCHHHHHH--HHHHHHHhcCCCEEEEcCCCCC-----CCHHHHH
Confidence            3456677765555  5699999999999999999999     9987653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.90  E-value=2e-09  Score=79.54  Aligned_cols=84  Identities=24%  Similarity=0.227  Sum_probs=47.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcCCCCC-cc-----ccceeEEEeeEEE----------------EecCcEEEEEEEeCCC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KY-----EPTIGVEVHPLDF----------------FTNCGKIRFYCWDTAG   71 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~~~~~-~~-----~~~~~~~~~~~~~----------------~~~~~~~~~~l~D~~g   71 (199)
                      ++|+++|.|+||||||+|.|.+..... .|     .|-.|+.......                ........+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            589999999999999999977543321 11     1222433221111                0112346799999999


Q ss_pred             cccc-------cccccccccCCcEEEEEEeCCC
Q 029077           72 QEKF-------GGLRDGYYIHGQCAIIMFDVTA   97 (199)
Q Consensus        72 ~~~~-------~~~~~~~~~~~d~~i~v~d~~~   97 (199)
                      .-..       .......++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            5321       1122334678999999999863

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.90  E-value=1.2e-09  Score=76.81  Aligned_cols=40  Identities=15%  Similarity=0.216  Sum_probs=32.4

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|...+  ...|++++..+|+++++|||+.+     +|+..+.
T Consensus       137 p~~LSGGqkQ--Rv~IAraL~~~P~iLllDEPt~~-----LD~~~~~  176 (240)
T d1g2912         137 PRELSGGQRQ--RVALGRAIVRKPQVFLMDEPLSN-----LDAKLRV  176 (240)
T ss_dssp             GGGSCHHHHH--HHHHHHHHHTCCSEEEEECTTTT-----SCHHHHH
T ss_pred             hhhCCHHHHH--HHHHHHHHhcCCCEEEecCCCcc-----cCHHHHH
Confidence            4556665444  46799999999999999999999     9988653

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=8.6e-09  Score=75.29  Aligned_cols=68  Identities=9%  Similarity=0.070  Sum_probs=41.4

Q ss_pred             EEEEEeCCCccccc-------------ccccccccCCc-EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCC
Q 029077           63 RFYCWDTAGQEKFG-------------GLRDGYYIHGQ-CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD  128 (199)
Q Consensus        63 ~~~l~D~~g~~~~~-------------~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D  128 (199)
                      .+.++|+||.....             .....|+.+.+ ++++|.++...........+...+...  ..++++|.||+|
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~--~~r~i~Vltk~D  203 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLD  203 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT--CSSEEEEEECGG
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcC--CCceeeEEeccc
Confidence            36899999954321             22334555666 455666666554444444555544322  468999999999


Q ss_pred             CCCc
Q 029077          129 VKNR  132 (199)
Q Consensus       129 ~~~~  132 (199)
                      ..+.
T Consensus       204 ~~~~  207 (299)
T d2akab1         204 LMDE  207 (299)
T ss_dssp             GSCT
T ss_pred             cccc
Confidence            8654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.84  E-value=2e-09  Score=75.64  Aligned_cols=52  Identities=12%  Similarity=0.136  Sum_probs=38.3

Q ss_pred             HHHHHcCCc---EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          140 TFHRKKNLQ---YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       140 ~~~~~~~~~---~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ++.+..++.   --..+.++|...+.  -+|++++..+|+++++|||+.+     +|+....
T Consensus       119 ~~l~~~~l~~~~~~~~~~LSGGq~QR--vaiAraL~~~P~iLllDEPts~-----LD~~~~~  173 (239)
T d1v43a3         119 WAAELLQIEELLNRYPAQLSGGQRQR--VAVARAIVVEPDVLLMDEPLSN-----LDAKLRV  173 (239)
T ss_dssp             HHHHHTTCGGGTTSCTTTCCSSCHHH--HHHHHHHTTCCSEEEEESTTTT-----SCHHHHH
T ss_pred             HHHHHcCChhhhcCChhhCCHHHHHH--HHHHhhhccCCCceeecCCccc-----CCHHHHH
Confidence            444444443   22356677766666  5699999999999999999999     9987653

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.81  E-value=1e-09  Score=76.63  Aligned_cols=40  Identities=25%  Similarity=0.294  Sum_probs=31.9

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ++.++|...  -.-.|++++..+|+++++|||+.+     +|+..+.
T Consensus       125 ~~~LSGG~~--QRvaiAraL~~~P~iLllDEPts~-----LD~~~~~  164 (229)
T d3d31a2         125 PLTLSGGEQ--QRVALARALVTNPKILLLDEPLSA-----LDPRTQE  164 (229)
T ss_dssp             GGGSCHHHH--HHHHHHHHTTSCCSEEEEESSSTT-----SCHHHHH
T ss_pred             hhhCCHHHh--cchhhhhhhhccCCceeecCCCcC-----CCHHHHH
Confidence            455555444  456799999999999999999999     9987653

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.80  E-value=3.8e-09  Score=76.47  Aligned_cols=84  Identities=24%  Similarity=0.206  Sum_probs=49.1

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCCCCC-cc-----ccceeEEEeeEE-E-----EecCcE---EEEEEEeCCCcccc--
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK-KY-----EPTIGVEVHPLD-F-----FTNCGK---IRFYCWDTAGQEKF--   75 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~~~~-~~-----~~~~~~~~~~~~-~-----~~~~~~---~~~~l~D~~g~~~~--   75 (199)
                      .+||+++|.|+||||||++++....... .|     .|-.|+...... .     .++...   ..+.+.|+||.-..  
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            4799999999999999999977544321 11     122332110000 0     001111   35889999995332  


Q ss_pred             --ccc---ccccccCCcEEEEEEeCC
Q 029077           76 --GGL---RDGYYIHGQCAIIMFDVT   96 (199)
Q Consensus        76 --~~~---~~~~~~~~d~~i~v~d~~   96 (199)
                        ..+   ....++++|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence              222   233478999999999864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.76  E-value=3.1e-09  Score=75.06  Aligned_cols=40  Identities=20%  Similarity=0.261  Sum_probs=31.9

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ++.++|..-+.  -.|++++..+|+++++|||+.+     +|+..+.
T Consensus       137 ~~~LSGG~~Qr--v~iAraL~~~P~lLllDEPt~g-----LD~~~~~  176 (240)
T d1ji0a_         137 GGTLSGGEQQM--LAIGRALMSRPKLLMMDEPSLG-----LAPILVS  176 (240)
T ss_dssp             SSSSCHHHHHH--HHHHHHHTTCCSEEEEECTTTT-----CCHHHHH
T ss_pred             hhhCCHHHHHH--HHHHHHHHhCCCEeeecCCCcC-----CCHHHHH
Confidence            45566554444  5699999999999999999999     9987653

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.75  E-value=1.4e-08  Score=74.12  Aligned_cols=81  Identities=17%  Similarity=0.082  Sum_probs=52.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCC--CCcc-----ccceeEEEeeEEEEecC---------------cEEEEEEEe
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKY-----EPTIGVEVHPLDFFTNC---------------GKIRFYCWD   68 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~--~~~~-----~~~~~~~~~~~~~~~~~---------------~~~~~~l~D   68 (199)
                      ...++|+++|.|+||||||+|.+.....  ...|     .|..|+      +.+.+               ....+.+.|
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~------v~v~d~r~~~l~~~~~~~~~~~~~i~~~D   81 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAK------VAVPDERFDWLCEAYKPKSRVPAFLTVFD   81 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEE------EEECCHHHHHHHHHHCCSEEECEEEEEEC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEE------EeccccchhhhhhcccCCceecccceeee
Confidence            3558999999999999999999875432  2222     122232      11111               125788999


Q ss_pred             CCCccccc-------ccccccccCCcEEEEEEeCCC
Q 029077           69 TAGQEKFG-------GLRDGYYIHGQCAIIMFDVTA   97 (199)
Q Consensus        69 ~~g~~~~~-------~~~~~~~~~~d~~i~v~d~~~   97 (199)
                      .||.-...       ......++++|++++|+|+.+
T Consensus        82 vaGLv~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          82 IAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             TGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccccccccHHHHHHHhhccceeEEEEeccC
Confidence            99854321       123344689999999999865

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.73  E-value=3.8e-08  Score=72.03  Aligned_cols=68  Identities=13%  Similarity=0.151  Sum_probs=40.3

Q ss_pred             EEEEEeCCCccccc-------------ccccccccCCcEEEEEE-eCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCC
Q 029077           63 RFYCWDTAGQEKFG-------------GLRDGYYIHGQCAIIMF-DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD  128 (199)
Q Consensus        63 ~~~l~D~~g~~~~~-------------~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D  128 (199)
                      .+.++|+||.....             .....|+.+++.+++++ +......-.....+...+..  ...++++|.||+|
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~--~~~r~i~Vitk~D  209 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLD  209 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc--CCCeEEEEEeccc
Confidence            46799999954321             23345677888766655 44433333344444444432  2468999999999


Q ss_pred             CCCc
Q 029077          129 VKNR  132 (199)
Q Consensus       129 ~~~~  132 (199)
                      ....
T Consensus       210 ~~~~  213 (306)
T d1jwyb_         210 LMDK  213 (306)
T ss_dssp             SSCS
T ss_pred             cccc
Confidence            8653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.73  E-value=7.2e-09  Score=72.41  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=31.3

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..++|.  +.-...|++++..+|+++++|||+.+     +|+..+.
T Consensus       144 ~~LSGG--qkQRvaIAraL~~~P~lLllDEPTs~-----LD~~~~~  182 (230)
T d1l2ta_         144 NQLSGG--QQQRVAIARALANNPPIILADQPTGA-----LDSKTGE  182 (230)
T ss_dssp             GGSCHH--HHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHH
T ss_pred             hhCCHH--HHHHHHHHhhhhcCCCEEEecCCccc-----cCHHHHH
Confidence            445554  44457799999999999999999999     9987653

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.73  E-value=5.2e-09  Score=73.74  Aligned_cols=40  Identities=28%  Similarity=0.439  Sum_probs=31.8

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+..+|...+.  -.|++++..+|+++++|||+.+     +|+..+.
T Consensus       131 ~~~lSgG~~qr--v~iA~al~~~p~illLDEPt~g-----LD~~~~~  170 (238)
T d1vpla_         131 VSTYSKGMVRK--LLIARALMVNPRLAILDEPTSG-----LDVLNAR  170 (238)
T ss_dssp             GGGCCHHHHHH--HHHHHHHTTCCSEEEEESTTTT-----CCHHHHH
T ss_pred             hhhCCHHHHHH--HHHHHHHhcCCCEEEecCCCCC-----CCHHHHH
Confidence            45555554444  5699999999999999999999     9987653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.72  E-value=1.1e-08  Score=73.69  Aligned_cols=61  Identities=20%  Similarity=0.163  Sum_probs=37.0

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHhcCCCCCccccceeEEEeeEEEEecCcEEEEEEEeCCCcc
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~   73 (199)
                      .....++|+|+|.++||||||+|+|... ......+..|+|.....+..+   -.+.++||||.-
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~~-~~~~~~~~pG~Tr~~~~i~~~---~~~~l~DTPGi~  168 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVG---KELELLDTPGIL  168 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEET---TTEEEEECCCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhcc-ceEEECCcccccccceEEECC---CCeEEecCCCcc
Confidence            3457799999999999999999997643 344556677777655544433   247899999953

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.70  E-value=3.4e-09  Score=75.58  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=32.9

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|.+.+.  -.|++++..+|+++++|||+.+     +|...+.
T Consensus       147 p~~LSGG~~QR--v~iAraL~~~P~llilDEPT~g-----LD~~~~~  186 (258)
T d1b0ua_         147 PVHLSGGQQQR--VSIARALAMEPDVLLFDEPTSA-----LDPELVG  186 (258)
T ss_dssp             GGGSCHHHHHH--HHHHHHHHTCCSEEEEESTTTT-----SCHHHHH
T ss_pred             cccccHHHHHH--HHHHHHHhcCCCEEEecccccc-----CCHHHHH
Confidence            35666665555  5599999999999999999999     9988753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.68  E-value=6.8e-08  Score=66.24  Aligned_cols=39  Identities=21%  Similarity=0.341  Sum_probs=30.8

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      ++..+|...+.  -.|++++..+|.++++|||+.+     +|...+
T Consensus       123 ~~~LSgG~~qr--v~ia~al~~~~~llllDEPt~g-----LD~~~~  161 (200)
T d1sgwa_         123 LGELSQGTIRR--VQLASTLLVNAEIYVLDDPVVA-----IDEDSK  161 (200)
T ss_dssp             GGGSCHHHHHH--HHHHHHTTSCCSEEEEESTTTT-----SCTTTH
T ss_pred             cCcCCCcHHHH--HHHHHHHhcCCCEEEEcCcccc-----cCHHHH
Confidence            34555544444  5699999999999999999999     988765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.68  E-value=7e-09  Score=72.73  Aligned_cols=39  Identities=28%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             eccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      .+.++|..-  -.-.|++++..+|+++++|||+.+     +|+..+
T Consensus       124 ~~~LSGG~k--QRvaiAral~~~P~illlDEPts~-----LD~~~~  162 (240)
T d2onka1         124 PARLSGGER--QRVALARALVIQPRLLLLDEPLSA-----VDLKTK  162 (240)
T ss_dssp             GGGSCHHHH--HHHHHHHHHTTCCSSBEEESTTSS-----CCHHHH
T ss_pred             hhhCCHHHH--HHHHHHHHHhccCCceEecCcccc-----CCHHHH
Confidence            455555444  456799999999999999999999     998765

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=6.1e-09  Score=73.21  Aligned_cols=39  Identities=28%  Similarity=0.361  Sum_probs=31.1

Q ss_pred             ccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       153 s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      ..++|.  +.-.-.|++++..+|+++++|||+.+     +|+..+.
T Consensus       139 ~~LSGG--~~QRvaiAraL~~~P~lLllDEPt~~-----LD~~~~~  177 (240)
T d3dhwc1         139 SNLSGG--QKQRVAIARALASNPKVLLCDEATSA-----LDPATTR  177 (240)
T ss_dssp             SCCCHH--HHHHHHHHHHHHTCCSEEEEESGGGS-----SCHHHHH
T ss_pred             hhCCHH--HHHHHHHhhhhccCCCeEEecccccc-----CCHHHhh
Confidence            445444  44457799999999999999999999     9987653

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.66  E-value=1.5e-08  Score=71.11  Aligned_cols=52  Identities=19%  Similarity=0.241  Sum_probs=36.6

Q ss_pred             HHHHHcCCc---EEEeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          140 TFHRKKNLQ---YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       140 ~~~~~~~~~---~~~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      +.....++.   -.....++|.  +.-.-.|++++..+|+++++|||+.+     +|.....
T Consensus       123 ~~l~~~gL~~~~~~~p~~LSGG--qkQRvaiARaL~~~P~llllDEPt~~-----LD~~~~~  177 (242)
T d1oxxk2         123 EVAKILDIHHVLNHFPRELSGA--QQQRVALARALVKDPSLLLLDEPFSN-----LDARMRD  177 (242)
T ss_dssp             HHHHHTTCGGGTTSCGGGSCHH--HHHHHHHHHHHTTCCSEEEEESTTTT-----SCGGGHH
T ss_pred             HHHhhcChHhhhhCChhhCCHH--HHhHHHHHhHHhhcccceeecCCccC-----CCHHHHH
Confidence            444444543   2223455544  44457799999999999999999999     9987653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.62  E-value=4.7e-09  Score=74.76  Aligned_cols=41  Identities=12%  Similarity=0.248  Sum_probs=33.2

Q ss_pred             EeccCCCCChHHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhhc
Q 029077          151 EISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       151 ~~s~~~~~~v~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .++.++|.+-+.  -.|++++..+|+++++|||+.+     +|+....
T Consensus       147 ~~~~LSgG~~Qr--v~iAraL~~~P~llilDEPt~g-----LD~~~~~  187 (254)
T d1g6ha_         147 KAGELSGGQMKL--VEIGRALMTNPKMIVMDEPIAG-----VAPGLAH  187 (254)
T ss_dssp             BGGGSCHHHHHH--HHHHHHHHTCCSEEEEESTTTT-----CCHHHHH
T ss_pred             chhhCCcHHHHH--HHHHHHHHhCcCchhhcCCccc-----CCHHHHH
Confidence            356666665555  5699999999999999999999     9987653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=5.8e-08  Score=68.37  Aligned_cols=32  Identities=19%  Similarity=0.445  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +...-.|++++..+|.++++|||+.+     +|....
T Consensus       144 q~QRvalARal~~~p~ililDEpts~-----LD~~~~  175 (241)
T d2pmka1         144 QRQRIAIARALVNNPKILIFDEATSA-----LDYESE  175 (241)
T ss_dssp             HHHHHHHHHHHTTCCSEEEECCCCSC-----CCHHHH
T ss_pred             HHHHHhhhhhhhcccchhhhhCCccc-----cCHHHH
Confidence            55567799999999999999999999     998765

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.46  E-value=1.1e-07  Score=66.94  Aligned_cols=32  Identities=16%  Similarity=0.406  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|++++..+|.++++|||+.+     +|....
T Consensus       144 qkQRv~iARal~~~p~ililDEpts~-----LD~~~~  175 (242)
T d1mv5a_         144 QRQRLAIARAFLRNPKILMLDEATAS-----LDSESE  175 (242)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCSCS-----SCSSSC
T ss_pred             HHHHHHHHHHHhcCCCEEEecCCccc-----cCHHHH
Confidence            45557799999999999999999999     887654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.46  E-value=3.4e-07  Score=65.79  Aligned_cols=88  Identities=11%  Similarity=0.087  Sum_probs=68.2

Q ss_pred             cccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHHHcCCcEEEeccCCCCC
Q 029077           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN  159 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (199)
                      ...+..+|++++|.|+.++.+..+-     .+.+...++|.|+|+||+|+.+.....+..+..+..+...+.+|+..+.+
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~~-----~l~~~~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~   84 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRNP-----MIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQG   84 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCCH-----HHHHHHcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCC
Confidence            3457899999999999988765541     22333358899999999999987766666666777788899999999999


Q ss_pred             hHHHHHHHHHHHh
Q 029077          160 FEKPFLYLARKLA  172 (199)
Q Consensus       160 v~~~~~~i~~~~~  172 (199)
                      ..++...+.+.+.
T Consensus        85 ~~~~~~~~~~~l~   97 (273)
T d1puja_          85 LNQIVPASKEILQ   97 (273)
T ss_dssp             GGGHHHHHHHHHH
T ss_pred             ccccchhhhhhhh
Confidence            9887776665544

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.6e-07  Score=65.41  Aligned_cols=32  Identities=25%  Similarity=0.393  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-+|++++..+|.++++|||+.+     +|...+
T Consensus       156 qkQRvaiARal~~~p~ililDEpTs~-----LD~~~~  187 (251)
T d1jj7a_         156 QRQAVALARALIRKPCVLILDDATSA-----LDANSQ  187 (251)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHH
T ss_pred             HceEEEEeeccccCCcEEEecCcCcc-----cChhhH
Confidence            45567799999999999999999999     997654

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=4.9e-07  Score=65.02  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +...-.|++++..+|.++++|||+.+     +|...+
T Consensus       163 qkQRv~lARaL~~~p~illLDEPts~-----LD~~~~  194 (281)
T d1r0wa_         163 QRARISLARAVYKDADLYLLDSPFGY-----LDVFTE  194 (281)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEESCCCS-----SCHHHH
T ss_pred             HHHHHHHHHHHHhCccchhhcCcccc-----CCHHHH
Confidence            45557799999999999999999999     997653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.36  E-value=8.8e-07  Score=61.29  Aligned_cols=86  Identities=15%  Similarity=0.077  Sum_probs=61.2

Q ss_pred             cccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHH--HcCCcEEEeccCC
Q 029077           80 DGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR--KKNLQYYEISAKS  156 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~--~~~~~~~~~s~~~  156 (199)
                      +....+.|.+++|+++.++. +...+.+++......  +++.++|+||+|+.+.........+..  ..+.+++.+|+++
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~   82 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKT   82 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTT
T ss_pred             CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEecccc
Confidence            34567899999999987754 344556665554444  899999999999987544333333333  3457899999999


Q ss_pred             CCChHHHHHHH
Q 029077          157 NYNFEKPFLYL  167 (199)
Q Consensus       157 ~~~v~~~~~~i  167 (199)
                      +.|++++...+
T Consensus        83 ~~g~~~L~~~l   93 (225)
T d1u0la2          83 GMGIEELKEYL   93 (225)
T ss_dssp             CTTHHHHHHHH
T ss_pred             chhHhhHHHHh
Confidence            99999877654

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.36  E-value=1.9e-08  Score=71.48  Aligned_cols=32  Identities=19%  Similarity=0.355  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +.-.-.|+++++.+|.++++|||+.+     +|...+
T Consensus       157 qkQRvaiARal~~~p~ililDEpts~-----LD~~~~  188 (253)
T d3b60a1         157 QRQRIAIARALLRDSPILILDEATSA-----LDTESE  188 (253)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEETTTSS-----CCHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEecccccc-----CCHHHH
Confidence            34557799999999999999999999     998764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=1.7e-07  Score=64.92  Aligned_cols=58  Identities=17%  Similarity=0.170  Sum_probs=33.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCCCCC--cc----ccceeEEEeeEEEEecCcEEEEEEEeCCCcccc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGEFEK--KY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~   75 (199)
                      ..+++|.+|||||||+|.|.......  ..    ....+++.....+.+.++   -.++||||...+
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~  160 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL  160 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence            67899999999999999976432211  11    111223333334444333   257899997554

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.32  E-value=2.4e-07  Score=65.67  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHhCCCCCceecCCCCCCcccchhHhhh
Q 029077          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQ  197 (199)
Q Consensus       161 ~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  197 (199)
                      +...-.|+++++.+|.++++|||+.+     +|....
T Consensus       159 q~QRi~iARal~~~p~ililDEpts~-----LD~~t~  190 (255)
T d2hyda1         159 QKQRLSIARIFLNNPPILILDEATSA-----LDLESE  190 (255)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCcccc-----CCHHHH
Confidence            44557799999999999999999999     998754

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.31  E-value=2.2e-06  Score=58.84  Aligned_cols=93  Identities=12%  Similarity=0.096  Sum_probs=53.7

Q ss_pred             EEEEEEEeCCCccccccc---c---ccc--ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCc
Q 029077           61 KIRFYCWDTAGQEKFGGL---R---DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~---~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~  132 (199)
                      +..+.++||+|...+...   .   ..+  ..+.+-+++|.+++....-  ...... .... .+ +--++.||.|...+
T Consensus        94 ~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~--~~~~~~-~~~~-~~-~~~lI~TKlDet~~  168 (211)
T d1j8yf2          94 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA--YDLASK-FNQA-SK-IGTIIITKMDGTAK  168 (211)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHH-HHHH-CT-TEEEEEECTTSCSC
T ss_pred             CCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcch--HHHHhh-hhcc-cC-cceEEEecccCCCc
Confidence            357899999996543321   1   111  2245678899998765321  222111 1111 12 22366899998654


Q ss_pred             cccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077          133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                        .-.........++++.+++  .|.++++
T Consensus       169 --~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         169 --GGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             --HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             --ccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence              2445677778888877766  4666643

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.27  E-value=3.9e-06  Score=57.39  Aligned_cols=85  Identities=11%  Similarity=0.074  Sum_probs=49.5

Q ss_pred             EEEEEEEeCCCcccccccc----ccc--------ccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCC
Q 029077           61 KIRFYCWDTAGQEKFGGLR----DGY--------YIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV  127 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~----~~~--------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~  127 (199)
                      ++.+.++||+|........    ..+        ....+-.++|.|++... ....+...+..+     +.. -++.||.
T Consensus        88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-----~~~-~lI~TKl  161 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-----GLT-GVIVTKL  161 (207)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-----CCS-EEEEECT
T ss_pred             CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-----CCc-eEEEecc
Confidence            4578999999965433221    111        12457788999987653 233333333332     222 3568999


Q ss_pred             CCCCccccHHHHHHHHHcCCcEEEec
Q 029077          128 DVKNRQVKAKQVTFHRKKNLQYYEIS  153 (199)
Q Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~~~s  153 (199)
                      |...+  .-.........+.++.+++
T Consensus       162 Det~~--~G~~l~~~~~~~~Pi~~i~  185 (207)
T d1okkd2         162 DGTAK--GGVLIPIVRTLKVPIKFVG  185 (207)
T ss_dssp             TSSCC--CTTHHHHHHHHCCCEEEEE
T ss_pred             CCCCC--ccHHHHHHHHHCCCEEEEe
Confidence            97644  2334566677788876665

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.22  E-value=1.8e-07  Score=64.98  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~   36 (199)
                      -..+++|++|||||||+|.|...
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            35679999999999999997753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=1.7e-07  Score=65.62  Aligned_cols=40  Identities=20%  Similarity=0.254  Sum_probs=28.9

Q ss_pred             eccCCCCChHHHHHHHHHHHhC-------CCCCceecCCCCCCcccchhHhhhc
Q 029077          152 ISAKSNYNFEKPFLYLARKLAG-------DPNLHFVESPALAPPEVQIDLAAQQ  198 (199)
Q Consensus       152 ~s~~~~~~v~~~~~~i~~~~~~-------~~~~~~~~~p~~~~~~~~~d~~~~~  198 (199)
                      .+.++|...+  .-.|++++..       +|+++++|||+.+     +|...++
T Consensus       123 ~~~LSgG~~Q--rv~iA~al~~~~p~~~p~p~llllDEPt~g-----LD~~~~~  169 (231)
T d1l7vc_         123 TNQLSGGEWQ--RVRLAAVVLQITPQANPAGQLLLLDEPMNS-----LDVAQQS  169 (231)
T ss_dssp             GGGCCHHHHH--HHHHHHHHHHHCTTTCTTCCEEEESSCSTT-----CCHHHHH
T ss_pred             hhhcCHHHHH--HHHHHHHHHhhCcccCCCCCEEEEcCCCCC-----CCHHHHH
Confidence            3455554434  4558888875       6799999999999     9987653

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.14  E-value=5.9e-07  Score=60.01  Aligned_cols=22  Identities=45%  Similarity=0.827  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      +||+++|++|||||||++.++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999998663

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=1.1e-06  Score=61.08  Aligned_cols=85  Identities=13%  Similarity=0.099  Sum_probs=60.9

Q ss_pred             cccccCCcEEEEEEeCCChh-hHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHH----HHHHHHHcCCcEEEecc
Q 029077           80 DGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQYYEISA  154 (199)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~----~~~~~~~~~~~~~~~s~  154 (199)
                      +....+.|.+++|+++.++. +...+.+++.....  .+++.++|+||+|+.+.....+    ..+.....+.+++.+|+
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~--~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH--cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeec
Confidence            34457899999999987764 44556665554444  3889999999999976543322    23456667899999999


Q ss_pred             CCCCChHHHHHH
Q 029077          155 KSNYNFEKPFLY  166 (199)
Q Consensus       155 ~~~~~v~~~~~~  166 (199)
                      .++.|++++...
T Consensus        83 ~~~~gl~~L~~~   94 (231)
T d1t9ha2          83 KDQDSLADIIPH   94 (231)
T ss_dssp             HHHTTCTTTGGG
T ss_pred             CChhHHHHHHHh
Confidence            999998775543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=1.2e-05  Score=55.68  Aligned_cols=21  Identities=33%  Similarity=0.502  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029077           16 LVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~~   36 (199)
                      ++|.|.-|||||||+++++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            678899999999999998854

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.7e-06  Score=57.96  Aligned_cols=24  Identities=25%  Similarity=0.451  Sum_probs=20.0

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      |+++ |+|+||+||||+||+++|+.
T Consensus         2 m~k~-ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           2 MRKT-LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             CCCE-EEEECCTTSSHHHHHHHHHH
T ss_pred             CCCc-EEEECCCCCCHHHHHHHHHH
Confidence            4444 88899999999999999764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.97  E-value=2.3e-06  Score=56.73  Aligned_cols=25  Identities=28%  Similarity=0.450  Sum_probs=22.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .|+.++|+++|++||||||+.+.|.
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La   26 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIA   26 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHH
Confidence            3677999999999999999999865

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.93  E-value=2.6e-06  Score=56.30  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      |...+|+++|++||||||+++.|.
T Consensus         2 m~~~~I~i~G~pGsGKTTia~~La   25 (173)
T d1rkba_           2 MLLPNILLTGTPGVGKTTLGKELA   25 (173)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999865

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.92  E-value=3.2e-06  Score=54.77  Aligned_cols=24  Identities=21%  Similarity=0.573  Sum_probs=19.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      |+++ |++.|++||||||++++|..
T Consensus         1 Mkkl-Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           1 MKKI-ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             CCEE-EEEECCTTSSHHHHHHHHHH
T ss_pred             CCEE-EEEECCCCCCHHHHHHHHHH
Confidence            3444 78899999999999998753

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.92  E-value=2.3e-06  Score=57.23  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      .-+|+|.|++|||||||+++|.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La   28 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLA   28 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999965

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.87  E-value=4.6e-06  Score=56.27  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      |+.+||+++|++||||||+.+.|.
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            456899999999999999999865

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=4.7e-06  Score=54.86  Aligned_cols=21  Identities=38%  Similarity=0.531  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      -|+|+|.+|||||||+++++.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999763

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.79  E-value=8.2e-06  Score=55.08  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=22.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +.+-+||+|+|++||||||+.+.|.
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La   27 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRIT   27 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHH
Confidence            4567899999999999999999865

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.78  E-value=6.8e-06  Score=54.88  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      +||+|+|++||||||+++.|.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.75  E-value=7.2e-06  Score=55.24  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=20.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..++|+|+|++||||||+++.|.
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La   24 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIK   24 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35689999999999999999754

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.73  E-value=9.1e-06  Score=54.39  Aligned_cols=21  Identities=33%  Similarity=0.552  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      +||+|+|++||||||+++.|.
T Consensus         1 M~I~i~G~pGSGKsT~a~~La   21 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999865

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=9.5e-06  Score=54.22  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      +||+|+|++||||||+.+.|.
T Consensus         1 m~I~i~G~pGsGKsT~a~~La   21 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLA   21 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999865

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=4.5e-06  Score=56.25  Aligned_cols=20  Identities=45%  Similarity=0.813  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029077           16 LVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~   35 (199)
                      |+|+|++|||||||+++|+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999764

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=1.2e-05  Score=53.76  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      .+||+|+|++||||||+.+.|.
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La   23 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQ   23 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4799999999999999999865

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.1e-05  Score=53.72  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      +||+|+|++||||||+.+.|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999998864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=2e-05  Score=52.24  Aligned_cols=26  Identities=38%  Similarity=0.570  Sum_probs=22.2

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHh
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..+...=|+++|.+||||||++++++
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            44566788999999999999999875

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.61  E-value=1.6e-05  Score=52.26  Aligned_cols=19  Identities=32%  Similarity=0.534  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029077           16 LVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~   34 (199)
                      +.|+|.+|||||||+++|+
T Consensus         4 i~I~G~~gSGKTTli~~l~   22 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWV   22 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            4699999999999999876

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.61  E-value=2.1e-05  Score=53.04  Aligned_cols=22  Identities=23%  Similarity=0.361  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...|+|+|++||||||++++|.
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La   27 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999999865

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.60  E-value=1.7e-05  Score=52.19  Aligned_cols=20  Identities=40%  Similarity=0.574  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -|++.|++||||||+++.|.
T Consensus         4 lI~i~G~~GsGKTTva~~L~   23 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLA   23 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            38899999999999999865

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.59  E-value=4.8e-06  Score=55.84  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=17.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029077           16 LVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~   35 (199)
                      |+++|++|||||||++.|..
T Consensus         5 ivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67899999999999998653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=1.7e-05  Score=51.58  Aligned_cols=20  Identities=30%  Similarity=0.536  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .|+++|++||||||+.+.|.
T Consensus         4 ~I~l~G~~GsGKSTvak~La   23 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLA   23 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999865

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=4.4e-05  Score=54.51  Aligned_cols=63  Identities=19%  Similarity=0.112  Sum_probs=41.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHhcCCCCCc-----cccceeEEEeeEEEEecCcEEEEEEEeCCCccc
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-----YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~   74 (199)
                      .+..-|.|+|+.++|||+|+|.|+.....-.     ...|.|+-...... ..+....+.++||.|...
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence            3456889999999999999999876553211     23355543322222 244567788999999643

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.51  E-value=3.2e-05  Score=53.21  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      |+.++|+|-|++||||||+.+.|.
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La   24 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIA   24 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            577899999999999999999865

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=2.4e-05  Score=51.91  Aligned_cols=20  Identities=30%  Similarity=0.609  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      +|++.|++|+|||||++.+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58999999999999999866

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.50  E-value=4e-05  Score=50.57  Aligned_cols=24  Identities=17%  Similarity=0.326  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .+-+-|.++|.+||||||+.+.|.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            344778899999999999998754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=2.5e-05  Score=51.33  Aligned_cols=20  Identities=45%  Similarity=0.609  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      ||+++|.+||||||+.+.+.
T Consensus         3 ~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            68999999999999998754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=3.8e-05  Score=51.72  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      +.|+|+|++||||||++..|.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La   22 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIV   22 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999865

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=1.3e-05  Score=54.87  Aligned_cols=21  Identities=19%  Similarity=0.517  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029077           16 LVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~~   36 (199)
                      |+|+||+|||||||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678999999999999997643

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=3.5e-05  Score=52.44  Aligned_cols=21  Identities=33%  Similarity=0.354  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      .-|+++|.+||||||++++|.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~   23 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLT   23 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            458899999999999999865

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.43  E-value=5e-05  Score=50.94  Aligned_cols=24  Identities=29%  Similarity=0.235  Sum_probs=21.1

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..++-|+|-|++|||||||++.|.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999865

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.41  E-value=3.6e-05  Score=50.36  Aligned_cols=20  Identities=30%  Similarity=0.546  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      +|+++|.+||||||+.+.|.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999854

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=4.6e-05  Score=49.98  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      --++++|++||||||+.+.|.
T Consensus         7 ~iivl~G~~GsGKsT~a~~La   27 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVA   27 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            346678999999999999865

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.35  E-value=5.4e-05  Score=50.26  Aligned_cols=20  Identities=30%  Similarity=0.410  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -|+|.|.+||||||+++.|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37888999999999999864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.34  E-value=4.9e-05  Score=50.01  Aligned_cols=20  Identities=30%  Similarity=0.524  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -|++.|++||||||+.+.|.
T Consensus         6 iI~l~G~~GsGKSTia~~La   25 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALA   25 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37889999999999999864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=9.3e-05  Score=49.83  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=19.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +.-.|+|+|++||||||+++.|.
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La   29 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLV   29 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34468899999999999999865

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=5.8e-05  Score=50.79  Aligned_cols=20  Identities=35%  Similarity=0.735  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 029077           16 LVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~   35 (199)
                      |+|+||+|||||||++.|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999998653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.28  E-value=9.6e-05  Score=48.51  Aligned_cols=20  Identities=20%  Similarity=0.414  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      =|+|.|++||||||+.+.|.
T Consensus         5 iI~l~G~~GsGKsTva~~L~   24 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQ   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46677999999999999865

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.26  E-value=0.0001  Score=51.99  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      .-|++.|++|||||||++.+..
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999998654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.25  E-value=8.3e-05  Score=48.95  Aligned_cols=20  Identities=30%  Similarity=0.444  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .|+++|.+||||||+.+.|.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            37789999999999999864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.22  E-value=8.6e-05  Score=49.98  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      --|+|+|++||||||++.+|.
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La   29 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIV   29 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            348899999999999999865

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.00087  Score=45.61  Aligned_cols=24  Identities=42%  Similarity=0.628  Sum_probs=19.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .+..-|+++|++||||||.+-+|.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            445688999999999999988755

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00012  Score=49.87  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      .+-|+|.|++|||||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4779999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=5.3e-05  Score=50.79  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=19.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +-..|.++|.+||||||+.+.|.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34578899999999999999864

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.00012  Score=50.85  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .+++.||+|+||||+++.+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la   56 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIA   56 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            68999999999999999865

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.07  E-value=0.0036  Score=42.25  Aligned_cols=20  Identities=35%  Similarity=0.420  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -|+++|++||||||.+-.|.
T Consensus        12 vi~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          12 LWFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             EEEEECCTTTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            36889999999999998865

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.06  E-value=0.00014  Score=50.48  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.+++.||+|+||||+++.+.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la   56 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIA   56 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999865

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.04  E-value=0.00025  Score=49.62  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +...|++.|++|||||++++.+.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA   61 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIA   61 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHh
Confidence            34679999999999999999865

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.04  E-value=0.00016  Score=48.09  Aligned_cols=20  Identities=30%  Similarity=0.459  Sum_probs=16.6

Q ss_pred             EEE-EEcCCCCCHHHHHHHHh
Q 029077           15 KLV-IVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~-viG~~~~GKStli~~l~   34 (199)
                      ||+ |.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            554 57999999999999864

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00022  Score=47.86  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .+-+++++|++|+|||+++..|.
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA   64 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLA   64 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHH
Confidence            44589999999999999998755

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.00  E-value=0.00014  Score=52.95  Aligned_cols=22  Identities=32%  Similarity=0.693  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhc
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~   35 (199)
                      .+|+|.|+.|||||||++.|+.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCEEEEeeccccchHHHHHHhh
Confidence            4699999999999999999763

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.00031  Score=46.90  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      +++-|+|.|..||||||+++.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            568899999999999999997643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.95  E-value=0.00021  Score=47.93  Aligned_cols=26  Identities=31%  Similarity=0.538  Sum_probs=22.1

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHh
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ...+.+-|+|-|..||||||+++.|.
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~   30 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFE   30 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHH
Confidence            34667899999999999999999754

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.91  E-value=0.00028  Score=48.65  Aligned_cols=20  Identities=35%  Similarity=0.421  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .+++.|++|+||||+++.+.
T Consensus        47 ~lll~Gp~G~GKTtla~~ia   66 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALA   66 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            58999999999999999865

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.91  E-value=0.00026  Score=45.83  Aligned_cols=36  Identities=31%  Similarity=0.372  Sum_probs=25.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCCC--CCcccccee
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIG   47 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~~--~~~~~~~~~   47 (199)
                      +..-|++-|+-|||||||++.++.+--  ....+||..
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~   69 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYT   69 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcccccccCCCceE
Confidence            345688999999999999998774322  233455553

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0003  Score=49.70  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=20.2

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..+=+++++|++|+|||++++.|.
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la   60 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLA   60 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHH
Confidence            344589999999999999998755

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.85  E-value=0.00029  Score=50.96  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=20.0

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +.-.++++||+|||||.|++.+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA   70 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLA   70 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHh
Confidence            34578999999999999999865

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00045  Score=49.79  Aligned_cols=26  Identities=19%  Similarity=0.203  Sum_probs=21.9

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHh
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .....+-|+|.|++||||||+.+.|.
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            34677999999999999999998754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00047  Score=48.05  Aligned_cols=23  Identities=26%  Similarity=0.176  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..-.+++.||+|+||||+++.+.
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la   73 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVA   73 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHH
Confidence            34479999999999999999865

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.81  E-value=0.00047  Score=48.30  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~   35 (199)
                      .-.++|.|++|+|||++++.+..
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998663

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.79  E-value=0.0005  Score=52.19  Aligned_cols=25  Identities=24%  Similarity=0.518  Sum_probs=21.2

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +..+-+|+++||+|||||-|+++|.
T Consensus        46 ei~ksNILliGPTGvGKTlLAr~LA   70 (443)
T d1g41a_          46 EVTPKNILMIGPTGVGKTEIARRLA   70 (443)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             ccccccEEEECCCCCCHHHHHHHHH
Confidence            3444599999999999999999965

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.78  E-value=0.00033  Score=49.23  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .|+|.|++|+|||||+++++
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            57899999999999999865

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.00038  Score=47.45  Aligned_cols=20  Identities=35%  Similarity=0.484  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -|+|.|++||||||+...|.
T Consensus         5 iI~I~GppGSGKgT~ak~La   24 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMA   24 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57788999999999999855

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.69  E-value=0.00067  Score=46.10  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .+..-|.+.|.+|||||||.+.|.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            445679999999999999999865

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.65  E-value=0.00052  Score=47.94  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.|++.|++|+|||++++.+.
T Consensus        43 ~giLl~GppGtGKT~la~aia   63 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVA   63 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHH
Confidence            359999999999999999866

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00049  Score=47.18  Aligned_cols=20  Identities=40%  Similarity=0.471  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      ++++.|++|+||||+++.+.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la   57 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLA   57 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHH
Confidence            58999999999999998755

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.59  E-value=0.00069  Score=45.70  Aligned_cols=21  Identities=33%  Similarity=0.523  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      +-|+|-|..||||||+++.|.
T Consensus         1 mlI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999755

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.00062  Score=46.88  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      .+++.|++|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            489999999999999998653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.58  E-value=0.00046  Score=48.66  Aligned_cols=19  Identities=37%  Similarity=0.447  Sum_probs=16.1

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029077           16 LVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~   34 (199)
                      +++.|++|+|||++++.+.
T Consensus        49 l~l~GppGtGKT~l~~~l~   67 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTV   67 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHH
Confidence            3456999999999999865

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0012  Score=44.75  Aligned_cols=92  Identities=12%  Similarity=0.077  Sum_probs=52.0

Q ss_pred             EEEEEEEeCCCcccccccc----cc---ccc-----CCcEEEEEEeCCChhh-HhcHHHHHHHHHhhcCCCcEEEEEeCC
Q 029077           61 KIRFYCWDTAGQEKFGGLR----DG---YYI-----HGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKV  127 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~----~~---~~~-----~~d~~i~v~d~~~~~s-~~~~~~~~~~l~~~~~~~p~iiv~~K~  127 (199)
                      ++.+.++||+|....+...    ..   ...     ..+-.++|.|++.... ...+...+..+     + +--++.||.
T Consensus        91 ~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-----~-~~~lIlTKl  164 (211)
T d2qy9a2          91 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-----G-LTGITLTKL  164 (211)
T ss_dssp             TCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-----C-CCEEEEECC
T ss_pred             CCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-----C-CceEEEeec
Confidence            3578999999954322211    11   111     2467889999875432 22222222221     2 223668999


Q ss_pred             CCCCccccHHHHHHHHHcCCcEEEeccCCCCChHH
Q 029077          128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (199)
Q Consensus       128 D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~v~~  162 (199)
                      |...+.  -.........+.++.+++  .|.++++
T Consensus       165 De~~~~--G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTAKG--GVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCTTT--THHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCCCc--cHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            986542  344566777888877776  5666643

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.001  Score=47.30  Aligned_cols=26  Identities=15%  Similarity=0.153  Sum_probs=21.5

Q ss_pred             cCCCceEEEEEcCCCCCHHHHHHHHh
Q 029077            9 VDYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus         9 ~~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .....+-|+|-|.+|||||||.+.+.
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHH
Confidence            34567899999999999999997653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.00047  Score=47.98  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      ++++.|++|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988654

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00076  Score=47.35  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.+++.|++|+|||++++.+.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA   66 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIA   66 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHH
Confidence            459999999999999999865

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.52  E-value=0.00064  Score=46.59  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      ++++.|++|+||||+++.+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            489999999999999998663

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.0011  Score=46.55  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.|++.|++|+|||++++.+.
T Consensus        39 ~giLL~GppGtGKT~l~~ala   59 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVA   59 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHH
Confidence            469999999999999999865

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.42  E-value=0.0025  Score=43.62  Aligned_cols=74  Identities=12%  Similarity=0.106  Sum_probs=47.9

Q ss_pred             cEEEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEE-EEEeCCCCCCccccHHH
Q 029077           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKAKQ  138 (199)
Q Consensus        60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~i-iv~~K~D~~~~~~~~~~  138 (199)
                      ..+.+.++|+++...  ......+..+|.++++...+ ..+..........+.+.  +.|++ +|.|+.+..+.....+.
T Consensus       110 ~~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~--~~~~~giv~N~~~~~~~~~~~~~  184 (237)
T d1g3qa_         110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA--GLAILGFVLNRYGRSDRDIPPEA  184 (237)
T ss_dssp             GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT--TCEEEEEEEEEETSCTTCCCHHH
T ss_pred             hcCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh--hhhhhhhhhcccccccchhhhHH
Confidence            346788889887532  33344566799999988764 45555555555555543  67765 77899987665544433

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0015  Score=44.25  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      +-|+|.|..||||||+++.|.
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            568999999999999999755

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.31  E-value=0.0018  Score=43.70  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      +-|+|.|..||||||+++.|.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999754

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.29  E-value=0.0013  Score=48.52  Aligned_cols=25  Identities=20%  Similarity=0.474  Sum_probs=21.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +.+.-+++++||+|||||-|+++|.
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHH
Confidence            4566779999999999999999865

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.26  E-value=0.0016  Score=42.86  Aligned_cols=25  Identities=24%  Similarity=0.437  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcCC
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTGE   37 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~~   37 (199)
                      -.-|++.|++|+||||++-.|....
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            3468999999999999999877543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.00019  Score=48.19  Aligned_cols=18  Identities=28%  Similarity=0.556  Sum_probs=15.8

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 029077           17 VIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        17 ~viG~~~~GKStli~~l~   34 (199)
                      +|+|++|||||||+..+.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            567999999999999864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.24  E-value=0.00081  Score=48.19  Aligned_cols=17  Identities=35%  Similarity=0.696  Sum_probs=15.2

Q ss_pred             EEEcCCCCCHHHHHHHH
Q 029077           17 VIVGDGGTGKTTFVKRH   33 (199)
Q Consensus        17 ~viG~~~~GKStli~~l   33 (199)
                      +++|++||||||++..+
T Consensus        28 vlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             EEECCTTTCSTHHHHHH
T ss_pred             EEECCCCCcHHHHHHHH
Confidence            57799999999999875

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.22  E-value=0.00061  Score=49.68  Aligned_cols=21  Identities=38%  Similarity=0.537  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -+|++.|++|+|||+|++++.
T Consensus        29 h~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHH
Confidence            479999999999999999864

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0022  Score=43.07  Aligned_cols=23  Identities=22%  Similarity=0.138  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGE   37 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~   37 (199)
                      -+.|.|++|+|||+|+..++.+.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46789999999999999877543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.21  E-value=0.0017  Score=42.74  Aligned_cols=24  Identities=17%  Similarity=0.375  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhcC
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~~   36 (199)
                      -.-|++.|++|+||||++-.|...
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            346899999999999999987744

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.20  E-value=0.0014  Score=44.40  Aligned_cols=19  Identities=42%  Similarity=0.464  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029077           16 LVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~   34 (199)
                      |+|-|..||||||+++.|.
T Consensus         5 IviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7788999999999999855

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.14  E-value=0.0016  Score=45.82  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      .-.|++.|++|+|||+|++.+.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala   62 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIA   62 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHH
Confidence            3469999999999999999865

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.10  E-value=0.0011  Score=49.37  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=18.5

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..=+++++|++|||||+|+..|.
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHH
Confidence            44568999999999999986543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.06  E-value=0.0011  Score=47.12  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=15.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      .-|+|.|.+||||||+.+.|.
T Consensus         5 pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            359999999999999998754

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0027  Score=45.88  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=20.7

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +.+.-.++++||+|+|||.|++.+.
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHHH
Confidence            3445579999999999999999855

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.002  Score=43.63  Aligned_cols=19  Identities=26%  Similarity=0.457  Sum_probs=16.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029077           16 LVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~   34 (199)
                      |+|-|..||||||+++.|.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7777999999999888754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.94  E-value=0.0014  Score=47.59  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=22.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHhc
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      -|..++|.|=|.-||||||+++.|..
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHHH
T ss_pred             CccceEEEEECCCCCCHHHHHHHHHH
Confidence            36678999999999999999998653

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0013  Score=45.30  Aligned_cols=21  Identities=38%  Similarity=0.442  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      -.|+|-|..||||||+++.|.
T Consensus         3 k~I~ieG~dGsGKST~~~~L~   23 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILK   23 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTG
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999744

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.93  E-value=0.0026  Score=41.50  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhcCC
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLTGE   37 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~~~   37 (199)
                      .-.-|++.|++|+||||+.-.++...
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            34578999999999999998877543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.0053  Score=41.97  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~   36 (199)
                      -+.|.|++|+|||+|+-.++..
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4788899999999999987644

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.81  E-value=0.0043  Score=42.77  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGE   37 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~   37 (199)
                      -++|.|++|+|||+|.-.++...
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47889999999999999877443

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.79  E-value=0.0033  Score=46.28  Aligned_cols=23  Identities=26%  Similarity=0.228  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +.-.+++.||+|+|||+|++.+.
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~  175 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALL  175 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHH
Confidence            34478999999999999999866

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.67  E-value=0.0031  Score=43.33  Aligned_cols=23  Identities=35%  Similarity=0.528  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCCHHHHHHHHhcC
Q 029077           14 FKLVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~~~   36 (199)
                      --++|.|++|+|||+|+.++..+
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            35788899999999999887643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.0027  Score=47.27  Aligned_cols=21  Identities=29%  Similarity=0.661  Sum_probs=17.1

Q ss_pred             CceEEEEEcCCCCCHHHHHHHH
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRH   33 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l   33 (199)
                      +.++ +|+|++|||||+|+..+
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHH
Confidence            3354 57799999999999986

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.47  E-value=0.0034  Score=45.49  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..++|.|=|.-||||||+++.|.
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La   25 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLV   25 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHT
T ss_pred             CceEEEEECCcCCCHHHHHHHHH
Confidence            45689999999999999999864

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.004  Score=42.80  Aligned_cols=21  Identities=43%  Similarity=0.499  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      --|+|=|..||||||+++.|.
T Consensus         3 k~IviEG~~GsGKST~~~~L~   23 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLT   23 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            368899999999999999865

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.42  E-value=0.0042  Score=46.39  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHhc
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~~   35 (199)
                      +.-=|+|.|+.||||||.+..++.
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hhceEEEEcCCCCCccHHHHHHhh
Confidence            344599999999999999999775

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.41  E-value=0.0046  Score=44.60  Aligned_cols=20  Identities=30%  Similarity=0.562  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .+++.|+||+|||.|++.+.
T Consensus       125 ~~l~~G~pG~GKT~la~ala  144 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALG  144 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            35567999999999999865

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.36  E-value=0.0066  Score=42.86  Aligned_cols=23  Identities=35%  Similarity=0.644  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHhc
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~~   35 (199)
                      ..-|+|.|..|+|||||++.++.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999998653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0053  Score=42.27  Aligned_cols=21  Identities=24%  Similarity=0.159  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      -++|.|++|+|||+|.-.++.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578899999999999998774

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.0049  Score=41.80  Aligned_cols=20  Identities=35%  Similarity=0.293  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      =|+|=|..||||||+++.|.
T Consensus         5 ~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            37899999999999999754

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.0059  Score=41.16  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      -+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999997553

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.0058  Score=42.07  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .+++.|++|+||||+++.+.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            47899999999999998754

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.16  E-value=0.0057  Score=41.86  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHhcCC
Q 029077           15 KLVIVGDGGTGKTTFVKRHLTGE   37 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~~~   37 (199)
                      -++|.|++|+|||+|+..+..+.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46788999999999999877433

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.15  E-value=0.007  Score=43.90  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..++|.|=|.-||||||+++.|.
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~   27 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMA   27 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCccCCHHHHHHHHH
Confidence            35799999999999999999865

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.07  E-value=0.0066  Score=41.70  Aligned_cols=20  Identities=20%  Similarity=0.232  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      .|++.|..||||||.++.|.
T Consensus         3 iIgiTG~igSGKsTva~~l~   22 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIM   22 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.92  E-value=0.0074  Score=40.96  Aligned_cols=21  Identities=38%  Similarity=0.570  Sum_probs=17.4

Q ss_pred             eEEEEEcCCCCCHHHHHHHHh
Q 029077           14 FKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~~~GKStli~~l~   34 (199)
                      --+.|.|++|+|||+|+..++
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            356788999999999987655

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.67  E-value=0.008  Score=44.98  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      .-+++|+|.+|+|||++++.++
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li   71 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELA   71 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHH
Confidence            4579999999999999987655

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.64  E-value=0.01  Score=40.14  Aligned_cols=19  Identities=37%  Similarity=0.531  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029077           16 LVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~   34 (199)
                      +.+.|++|+|||-|++.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~   57 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAG   57 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7899999999999999855

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.57  E-value=0.013  Score=42.07  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=19.4

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      .+.-.++++|++|+|||.+++.+.
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHHH
Confidence            334467899999999999999754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.57  E-value=0.011  Score=41.49  Aligned_cols=19  Identities=32%  Similarity=0.751  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029077           16 LVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~   34 (199)
                      ++|.|++|+|||+|+..+.
T Consensus        38 ~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            6788999999999988765

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.50  E-value=0.01  Score=39.56  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=20.9

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      +++--+++.|++++|||.|+..++
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~   74 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFI   74 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHH
Confidence            556678999999999999999866

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.29  E-value=0.016  Score=35.19  Aligned_cols=25  Identities=12%  Similarity=0.122  Sum_probs=21.6

Q ss_pred             CCCceEEEEEcCCCCCHHHHHHHHh
Q 029077           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        10 ~~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..+-+.|.+-|..|+|||||.+.|.
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHH
Confidence            3456889999999999999999875

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.25  E-value=0.0099  Score=42.46  Aligned_cols=16  Identities=38%  Similarity=0.708  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCCHHHHH
Q 029077           15 KLVIVGDGGTGKTTFV   30 (199)
Q Consensus        15 ~i~viG~~~~GKStli   30 (199)
                      .++|.|.+||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4889999999999765

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.23  E-value=0.0084  Score=42.48  Aligned_cols=16  Identities=25%  Similarity=0.607  Sum_probs=13.6

Q ss_pred             EEEEEcCCCCCHHHHH
Q 029077           15 KLVIVGDGGTGKTTFV   30 (199)
Q Consensus        15 ~i~viG~~~~GKStli   30 (199)
                      .++|+|.+|+||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3789999999999754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.015  Score=41.11  Aligned_cols=20  Identities=25%  Similarity=0.320  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      |++|+|+.|+|||+|+..+.
T Consensus        45 r~~I~g~~g~GKT~l~~~i~   64 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIA   64 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHH
Confidence            89999999999999998755

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.05  E-value=0.015  Score=40.54  Aligned_cols=20  Identities=25%  Similarity=0.381  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -++|.|++|+|||+|+-.+.
T Consensus        31 ~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            35689999999999997754

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.32  E-value=0.026  Score=38.66  Aligned_cols=20  Identities=30%  Similarity=0.577  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -+++.|++.+||||+++.+.
T Consensus        43 ~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeccCchhhHHHHHHHH
Confidence            36889999999999999744

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.20  E-value=0.035  Score=38.78  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCCHHHHHHHHh
Q 029077           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        11 ~~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ++.--+.+.|++++|||+|++.+.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~  125 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIA  125 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHH
Confidence            556678899999999999999865

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.18  E-value=0.027  Score=41.18  Aligned_cols=18  Identities=56%  Similarity=0.643  Sum_probs=15.3

Q ss_pred             EEEEEcCCCCCHHHHHHH
Q 029077           15 KLVIVGDGGTGKTTFVKR   32 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~   32 (199)
                      -.+|.|++|+||||++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            477889999999998754

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.10  E-value=0.029  Score=38.15  Aligned_cols=19  Identities=32%  Similarity=0.637  Sum_probs=16.9

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 029077           16 LVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~   34 (199)
                      +++.|++.+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            7899999999999999744

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.64  E-value=0.036  Score=38.24  Aligned_cols=22  Identities=23%  Similarity=0.441  Sum_probs=18.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      ..-|+|.|++|+||+.+++.+-
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih   44 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIH   44 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHH
Confidence            3458999999999999999753

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.60  E-value=0.038  Score=38.35  Aligned_cols=113  Identities=13%  Similarity=0.136  Sum_probs=57.7

Q ss_pred             EEEEEEEeCCCccccccc-ccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcE-EEEEeCCCCCCccccH
Q 029077           61 KIRFYCWDTAGQEKFGGL-RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI-VLCGNKVDVKNRQVKA  136 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~-iiv~~K~D~~~~~~~~  136 (199)
                      .+.+.+.|+++.-..... .......+|.++++.+. +..++.........+....  .+.++ -++.|+.+.....  .
T Consensus       115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~--~  191 (269)
T d1cp2a_         115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEY--E  191 (269)
T ss_dssp             TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCH--H
T ss_pred             cCCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCcc--c
Confidence            367788898764322221 12223457888777765 4555655555555444432  23333 3677988765532  1


Q ss_pred             HHHHHHHHcCCcEEEe---------ccCCC---------CChHHHHHHHHHHHhCCCC
Q 029077          137 KQVTFHRKKNLQYYEI---------SAKSN---------YNFEKPFLYLARKLAGDPN  176 (199)
Q Consensus       137 ~~~~~~~~~~~~~~~~---------s~~~~---------~~v~~~~~~i~~~~~~~~~  176 (199)
                      ....+++..+.+++.+         +...|         ......|..+++.+.++..
T Consensus       192 ~~~~~~~~~~~~~~~~IP~d~~i~~a~~~g~~v~~~~p~s~~a~~~~~La~~i~~~~~  249 (269)
T d1cp2a_         192 LLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYDPTCEQAEEYRELARKVDANEL  249 (269)
T ss_dssp             HHHHHHHHHTCCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhhHhhcCCeEEEEEecCHHHHHHHHCCCCeEEECcCCHHHHHHHHHHHHHHcCCC
Confidence            1223444555544331         11112         2234456777777776544

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.37  E-value=0.046  Score=38.30  Aligned_cols=21  Identities=29%  Similarity=0.591  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHhc
Q 029077           15 KLVIVGDGGTGKTTFVKRHLT   35 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~~   35 (199)
                      |++++|..|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            899999999999999888653

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.82  E-value=0.054  Score=37.71  Aligned_cols=20  Identities=30%  Similarity=0.413  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -+.+.|++|+|||||+-.+.
T Consensus        56 itei~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVI   75 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHH
Confidence            46788999999999997655

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.69  E-value=0.058  Score=35.24  Aligned_cols=21  Identities=14%  Similarity=0.430  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 029077           16 LVIVGDGGTGKTTFVKRHLTG   36 (199)
Q Consensus        16 i~viG~~~~GKStli~~l~~~   36 (199)
                      |+|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999997643

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.84  E-value=0.05  Score=38.69  Aligned_cols=14  Identities=57%  Similarity=0.771  Sum_probs=12.8

Q ss_pred             EEEcCCCCCHHHHH
Q 029077           17 VIVGDGGTGKTTFV   30 (199)
Q Consensus        17 ~viG~~~~GKStli   30 (199)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68999999999976

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.63  E-value=0.067  Score=37.53  Aligned_cols=115  Identities=14%  Similarity=0.168  Sum_probs=57.4

Q ss_pred             EEEEEEEeCCCccccccccccc-ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhc--CCCcEE-EEEeCCCCCCccccH
Q 029077           61 KIRFYCWDTAGQEKFGGLRDGY-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIV-LCGNKVDVKNRQVKA  136 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~--~~~p~i-iv~~K~D~~~~~~~~  136 (199)
                      .+.+.++|+++.-......... ...++.++++.. .+..+...+......+....  .+.++. +|.|+.+.....  .
T Consensus       118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~--~  194 (289)
T d2afhe1         118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRED--E  194 (289)
T ss_dssp             TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHH--H
T ss_pred             cCCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhH--H
Confidence            4677788887643222221211 234566655544 44455555555544444332  344543 677887654321  1


Q ss_pred             HHHHHHHHcCCcEEEe---------ccCC---------CCChHHHHHHHHHHHhCCCCCc
Q 029077          137 KQVTFHRKKNLQYYEI---------SAKS---------NYNFEKPFLYLARKLAGDPNLH  178 (199)
Q Consensus       137 ~~~~~~~~~~~~~~~~---------s~~~---------~~~v~~~~~~i~~~~~~~~~~~  178 (199)
                      ....+++..+.+++.+         +...         +....+-|..|++.+.+++...
T Consensus       195 ~~~~~~~~~g~~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~~~~  254 (289)
T d2afhe1         195 LIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKLLV  254 (289)
T ss_dssp             HHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCCCB
T ss_pred             HHHHHHHHcCCeEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCCCCC
Confidence            1234455555554431         1111         2223456788888888777643

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.46  E-value=0.054  Score=38.64  Aligned_cols=16  Identities=50%  Similarity=0.652  Sum_probs=13.7

Q ss_pred             EEEEcCCCCCHHHHHH
Q 029077           16 LVIVGDGGTGKTTFVK   31 (199)
Q Consensus        16 i~viG~~~~GKStli~   31 (199)
                      -+++|.+|+|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            4889999999999653

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.15  E-value=0.12  Score=31.66  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=17.1

Q ss_pred             CceEE-EEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKL-VIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i-~viG~~~~GKStli~~l~   34 (199)
                      +..++ ++.++.|+|||+++-.++
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHH
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHH
Confidence            34444 668999999999886544

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.09  E-value=0.065  Score=38.26  Aligned_cols=15  Identities=53%  Similarity=0.691  Sum_probs=13.4

Q ss_pred             EEEEcCCCCCHHHHH
Q 029077           16 LVIVGDGGTGKTTFV   30 (199)
Q Consensus        16 i~viG~~~~GKStli   30 (199)
                      -+++|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            469999999999987

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=89.50  E-value=0.11  Score=36.28  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=23.2

Q ss_pred             EEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcE-EEEEeCC
Q 029077           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKV  127 (199)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~-iiv~~K~  127 (199)
                      .+++|-.. +..+..+..+.+..+...  ++|+ -+|+|+.
T Consensus       200 ~~~lVt~p-e~~~~~~~~r~~~~l~~~--gi~~~~vVvN~v  237 (296)
T d1ihua1         200 RLVLVARL-QKSTLQEVARTHLELAAI--GLKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEES-CHHHHHHHHHHHHHHHHH--TCCCEEEEEEEE
T ss_pred             eeeEecCc-chhHHHHHHHHHHHHHhc--CCCceEEEEcCC
Confidence            45555443 456677777777777665  5665 4667886

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.17  E-value=0.09  Score=36.97  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      |++++|..|+|||+|+..+.
T Consensus        70 r~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHH
Confidence            88999999999999987655

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.92  E-value=0.12  Score=34.10  Aligned_cols=23  Identities=9%  Similarity=0.034  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCCHHHHHHHHh
Q 029077           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        12 ~~~~i~viG~~~~GKStli~~l~   34 (199)
                      ....+++.|++|+|||+++..+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~   36 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELP   36 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999998755

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.90  E-value=0.13  Score=35.66  Aligned_cols=22  Identities=36%  Similarity=0.659  Sum_probs=15.5

Q ss_pred             CCceEEEEE-cCCCCCHHHHHHH
Q 029077           11 YPSFKLVIV-GDGGTGKTTFVKR   32 (199)
Q Consensus        11 ~~~~~i~vi-G~~~~GKStli~~   32 (199)
                      .+..||+++ |..|+||||+.-.
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~n   39 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAA   39 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHH
T ss_pred             cCCCEEEEEECCCCCCHHHHHHH
Confidence            344455555 9999999998543

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=88.71  E-value=0.14  Score=35.69  Aligned_cols=20  Identities=30%  Similarity=0.265  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -+.+.|++++|||+|+-.+.
T Consensus        59 itei~G~~~sGKT~l~l~~~   78 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIV   78 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHH
Confidence            46788999999999997755

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=88.69  E-value=0.6  Score=30.01  Aligned_cols=28  Identities=18%  Similarity=0.207  Sum_probs=19.3

Q ss_pred             cCCCceEEEEEcC-CCCCHHHHHHHHhcCC
Q 029077            9 VDYPSFKLVIVGD-GGTGKTTFVKRHLTGE   37 (199)
Q Consensus         9 ~~~~~~~i~viG~-~~~GKStli~~l~~~~   37 (199)
                      ..++.+||+|+|- .++|-|.+.. |..+.
T Consensus        20 ~~k~~~kV~I~GA~G~Ig~~l~~~-La~g~   48 (175)
T d7mdha1          20 SWKKLVNIAVSGAAGMISNHLLFK-LASGE   48 (175)
T ss_dssp             -CCCCEEEEEETTTSHHHHHHHHH-HHHTT
T ss_pred             ccCCCcEEEEECCCcHHHHHHHHH-HHcCc
Confidence            3457889999996 7888776665 45443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.16  E-value=0.16  Score=35.33  Aligned_cols=20  Identities=30%  Similarity=0.395  Sum_probs=16.5

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      -+.+.|++++|||+|+-.+.
T Consensus        62 i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHH
Confidence            46788999999999986644

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=87.71  E-value=0.13  Score=35.92  Aligned_cols=20  Identities=35%  Similarity=0.601  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCCHHHHHHHHh
Q 029077           15 KLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        15 ~i~viG~~~~GKStli~~l~   34 (199)
                      |++++|.+|+|||+|+..+.
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHH
Confidence            78999999999999997644

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.41  E-value=0.2  Score=33.02  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=16.9

Q ss_pred             eEEEEEcCC-CCCHHHHHHHHh
Q 029077           14 FKLVIVGDG-GTGKTTFVKRHL   34 (199)
Q Consensus        14 ~~i~viG~~-~~GKStli~~l~   34 (199)
                      -|+.|.|-. ||||||+.--|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            478899996 999999886533

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=86.86  E-value=0.21  Score=30.97  Aligned_cols=16  Identities=38%  Similarity=0.569  Sum_probs=13.1

Q ss_pred             EEEcCCCCCHHH-HHHH
Q 029077           17 VIVGDGGTGKTT-FVKR   32 (199)
Q Consensus        17 ~viG~~~~GKSt-li~~   32 (199)
                      +++|+=.||||| |+++
T Consensus         6 ~i~GpMfsGKTteLi~~   22 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRR   22 (139)
T ss_dssp             EEECSTTSCHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHH
Confidence            457999999999 6665

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=86.86  E-value=0.74  Score=34.90  Aligned_cols=90  Identities=13%  Similarity=0.084  Sum_probs=58.1

Q ss_pred             cCCcEEEEEEeCCC----------------h----hhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccccHHHHHHHH
Q 029077           84 IHGQCAIIMFDVTA----------------R----LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR  143 (199)
Q Consensus        84 ~~~d~~i~v~d~~~----------------~----~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~~~~~~~~~~  143 (199)
                      ...|++++|..+..                .    ..+.++.+-++.+.++  .+|+++.+|+.............++|.
T Consensus       317 l~P~~~VlVaTvRALK~HGG~~~~~l~~eNl~Al~~G~~NL~rHIeNi~~f--GlpvVVAIN~F~tDTd~Ei~~i~~~~~  394 (549)
T d1eg7a_         317 FKPDATVIVATVRALKMHGGVPKSDLATENLEALREGFANLEKHIENIGKF--GVPAVVAINAFPTDTEAELNLLYELCA  394 (549)
T ss_dssp             CCCCEEEEEECHHHHHHTTTCCGGGTTSCCHHHHHHHHHHHHHHHHHHHTT--TCCEEEEEECCTTCCHHHHHHHHHHTT
T ss_pred             CCCceEEEEeehhhhhhcCCCChHHcCcccHHHHHHHHHHHHHHHHhhhhc--CCCeEEEeccCCccchhHHHHHHHHHh
Confidence            36788888876431                1    1223344444455443  899999999997665544455566777


Q ss_pred             HcCCcEEEeccCCCCChHHHHHHHHHHHhCCC
Q 029077          144 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (199)
Q Consensus       144 ~~~~~~~~~s~~~~~~v~~~~~~i~~~~~~~~  175 (199)
                      +.++.....-+.-|.|-.++-+.+.+++...+
T Consensus       395 ~~g~~~a~~wa~GG~Ga~dLA~~Vv~a~e~~~  426 (549)
T d1eg7a_         395 KAGAEVALSWAKGGEGGLELARKVLQTLESRP  426 (549)
T ss_dssp             TSEEEEECCTTTGGGGGHHHHHHHHHHHHHSC
T ss_pred             hcCcceeeecccCccchHHHHHHHHHHHhccc
Confidence            77766544445566788888888888886544

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.85  E-value=0.7  Score=28.89  Aligned_cols=26  Identities=19%  Similarity=0.492  Sum_probs=18.2

Q ss_pred             CceEEEEEcC-CCCCHHHHHHHHhcCCC
Q 029077           12 PSFKLVIVGD-GGTGKTTFVKRHLTGEF   38 (199)
Q Consensus        12 ~~~~i~viG~-~~~GKStli~~l~~~~~   38 (199)
                      +.+||+|+|- .++|.+.... +..+..
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~-l~~~~l   29 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFR-IAAGEM   29 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHH-HHTTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHH-HHhccc
Confidence            4679999995 7899766555 454443

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=85.24  E-value=0.1  Score=31.70  Aligned_cols=18  Identities=28%  Similarity=0.259  Sum_probs=13.7

Q ss_pred             ceEEEEEcCCCCCHHHHH
Q 029077           13 SFKLVIVGDGGTGKTTFV   30 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli   30 (199)
                      .-++++.+++|+|||..+
T Consensus         7 ~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TCEEEECCCTTSSTTTTH
T ss_pred             CCcEEEEcCCCCChhHHH
Confidence            356778899999999443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.48  E-value=0.32  Score=31.63  Aligned_cols=16  Identities=38%  Similarity=0.412  Sum_probs=13.4

Q ss_pred             EEEEEcCCCCCHHHHH
Q 029077           15 KLVIVGDGGTGKTTFV   30 (199)
Q Consensus        15 ~i~viG~~~~GKStli   30 (199)
                      +++++++.|+|||.+.
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            5788999999999743

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.25  E-value=0.44  Score=31.64  Aligned_cols=83  Identities=5%  Similarity=-0.078  Sum_probs=45.1

Q ss_pred             EEEEEEeCCCcccccccccccccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcE-EEEEeCCCCCCccccHHHHH
Q 029077           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVKAKQVT  140 (199)
Q Consensus        62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~-iiv~~K~D~~~~~~~~~~~~  140 (199)
                      +.+.++|+++...  ......+..+|.++++.... ..+..........+.+.  +.++ -+|.|+.+....+..  ...
T Consensus       110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~~~~~~--~~~  182 (232)
T d1hyqa_         110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL--GTKVLGVVVNRITTLGIEMA--KNE  182 (232)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH--TCEEEEEEEEEECTTTHHHH--HHH
T ss_pred             cceeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc--ccccccccccccccccccch--hhh
Confidence            5567888876432  23334456789888887764 34444444444434333  3444 467898765432222  223


Q ss_pred             HHHHcCCcEEE
Q 029077          141 FHRKKNLQYYE  151 (199)
Q Consensus       141 ~~~~~~~~~~~  151 (199)
                      +.+..+.+++.
T Consensus       183 i~~~~~~~~~~  193 (232)
T d1hyqa_         183 IEAILEAKVIG  193 (232)
T ss_dssp             HHHHTTSCEEE
T ss_pred             HHhhcCCeEEE
Confidence            44555666543

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.18  E-value=0.15  Score=33.62  Aligned_cols=17  Identities=24%  Similarity=0.298  Sum_probs=14.5

Q ss_pred             eEEEEEcCCCCCHHHHH
Q 029077           14 FKLVIVGDGGTGKTTFV   30 (199)
Q Consensus        14 ~~i~viG~~~~GKStli   30 (199)
                      -++++.+++|+|||+..
T Consensus        41 ~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             SCEEEECSSHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHH
Confidence            36899999999999864

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.01  E-value=0.89  Score=28.37  Aligned_cols=20  Identities=10%  Similarity=0.355  Sum_probs=16.5

Q ss_pred             CceEEEEEcC-CCCCHHHHHH
Q 029077           12 PSFKLVIVGD-GGTGKTTFVK   31 (199)
Q Consensus        12 ~~~~i~viG~-~~~GKStli~   31 (199)
                      ..+||+|+|- .++|.+....
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~   22 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYS   22 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHH
T ss_pred             CceEEEEECCCCHHHHHHHHH
Confidence            4689999994 8999987765

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.69  E-value=3.3  Score=25.57  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=15.5

Q ss_pred             ceEEEEEcCCCCCHHHHHHHHh
Q 029077           13 SFKLVIVGDGGTGKTTFVKRHL   34 (199)
Q Consensus        13 ~~~i~viG~~~~GKStli~~l~   34 (199)
                      +.||.|+|..++|. |+...+.
T Consensus         3 ~~KI~IIGaG~VG~-~~a~~l~   23 (150)
T d1t2da1           3 KAKIVLVGSGMIGG-VMATLIV   23 (150)
T ss_dssp             CCEEEEECCSHHHH-HHHHHHH
T ss_pred             CCeEEEECCCHHHH-HHHHHHH
Confidence            46999999888885 5555544

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=81.33  E-value=3.5  Score=27.02  Aligned_cols=86  Identities=14%  Similarity=0.096  Sum_probs=50.1

Q ss_pred             EEEEEEEeCCCcccccccccc----c--ccCCcEEEEEEeCCChhhHhcHHHHHHHHHhhcCCCcEEEEEeCCCCCCccc
Q 029077           61 KIRFYCWDTAGQEKFGGLRDG----Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (199)
Q Consensus        61 ~~~~~l~D~~g~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~p~iiv~~K~D~~~~~~  134 (199)
                      +..+.++||+|..........    +  ..+.+-+++|.|++....-..   ....+.+.. +. -=++.||.|...+  
T Consensus        92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~---~~~~f~~~~-~~-~~~I~TKlDe~~~--  164 (207)
T d1ls1a2          92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS---VARAFDEKV-GV-TGLVLTKLDGDAR--  164 (207)
T ss_dssp             TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH---HHHHHHHHT-CC-CEEEEECGGGCSS--
T ss_pred             cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHH---HHHHHHhhC-CC-CeeEEeecCcccc--
Confidence            457889999996543332211    1  235688899999876543221   222222211 21 1266899997543  


Q ss_pred             cHHHHHHHHHcCCcEEEec
Q 029077          135 KAKQVTFHRKKNLQYYEIS  153 (199)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~s  153 (199)
                      .-.....+...+.++.+++
T Consensus       165 ~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         165 GGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             CHHHHHHHHHHCCCEEEEC
T ss_pred             chHHHHHHHHHCCCEEEEe
Confidence            3445677777888876664