Citrus Sinensis ID: 029081

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDSM
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccccEEEccccEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccEEEEEcccEEEEEccc
Coil and Loop (DISEMBL)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKlqvhppeiivdhhiylppgpghhnahgpswrcrggfsrwedsm
Flexible Loop (DISEMBL)
mndadvskqIQQMVRFIRQEAEEKANeisvsaeeefnieklqlveAEKKKIRqeyerkekqveiRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDSM
Low Complexity Region (SEG)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLppgpghhnahgpSWRCRGGFSRWEDSM
Disordered region (IsUnstruct)
********************************************************************EYSMQLNASRIKVLQA***************VLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGP********SWRCRG*********
Disordered Region (DISOPRED)
****D*SKQIQQMVRFIRQEAEEKANEISVSAEEEFN*********************************************QAQDDLVSNMMEAA************SYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDSM
Disordered Region (DISEMBL)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDSM
Disordered Region (DISPRO)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNxxxxxxxxxxxxxxxxxxxxxxxxVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDSM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q9MB46	230	V-type proton ATPase subu	N/A	no	0.954	0.826	0.979	1e-104
Q9SWE7	230	V-type proton ATPase subu	N/A	no	0.954	0.826	0.973	1e-103
O23948	237	V-type proton ATPase subu	N/A	no	0.944	0.793	0.798	4e-80
Q41396	229	V-type proton ATPase subu	N/A	no	0.944	0.820	0.780	5e-78
Q39258	230	V-type proton ATPase subu	yes	no	0.949	0.821	0.732	3e-75
Q40272	226	V-type proton ATPase subu	N/A	no	0.944	0.831	0.748	5e-72
P0CAN7	237	V-type proton ATPase subu	no	no	0.949	0.797	0.705	6e-71
Q9C9Z8	235	V-type proton ATPase subu	no	no	0.949	0.804	0.652	9e-65
P31402	226	V-type proton ATPase subu	N/A	no	0.869	0.765	0.482	4e-35
P50518	226	V-type proton ATPase subu	yes	no	0.854	0.752	0.457	2e-34

>sp|Q9MB46|VATE_CITUN V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1

 Score =  376 bits (965), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/192 (97%), Positives = 188/192 (97%), Gaps = 2/192 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSWRCRGGF 192
           AHGPS  C GG 
Sbjct: 181 AHGPS--CSGGV 190

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Citrus unshiu (taxid: 55188)

>sp|Q9SWE7|VATE_CITLI V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1

 Score =  373 bits (958), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/192 (97%), Positives = 187/192 (97%), Gaps = 2/192 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSWRCRGGF 192
           AHGPS  C GG 
Sbjct: 181 AHGPS--CSGGV 190

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Citrus limon (taxid: 2708)

>sp|O23948|VATE_GOSHI V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1

 Score =  297 bits (760), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 159/199 (79%), Positives = 173/199 (86%), Gaps = 11/199 (5%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           M+DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDD+V+ M E+ASK+ LNVS DH+ YK+LLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNVSHDHHVYKRLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHH- 179
           SL+RLKEP VLLRCRK+D HLVESVL+SAKEEYA K+ VHPPEIIVD  ++LPPGP HH 
Sbjct: 121 SLVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVD-DVHLPPGPSHHH 179

Query: 180 -------NAHGPSWRCRGG 191
                   AHGP   C GG
Sbjct: 180 GFFHHHAEAHGPF--CSGG 196

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Gossypium hirsutum (taxid: 3635)

>sp|Q41396|VATE_SPIOL V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1

 Score =  290 bits (741), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 149/191 (78%), Positives = 165/191 (86%), Gaps = 3/191 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DV KQIQQMVRFIRQEAEEKANEISV+AEEEFNIEKLQLVEAEKKKIR EYERKEK
Sbjct: 1   MNDTDVQKQIQQMVRFIRQEAEEKANEISVAAEEEFNIEKLQLVEAEKKKIRPEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++R+KIEYSMQLNASRIKVLQAQDDLV++M E A+KE+L VS DH+ YK+LLK L+VQ
Sbjct: 61  QVQVRRKIEYSMQLNASRIKVLQAQDDLVNSMKEEAAKELLRVSGDHHHYKRLLKELVVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRL+EP VLLRCR+DD HLVE VL SAKEEYA+K +VH PEIIVD  I+LP GP HH 
Sbjct: 121 SLLRLREPGVLLRCREDDVHLVEHVLNSAKEEYAEKAEVHTPEIIVD-SIHLPAGPSHHK 179

Query: 181 AHGPSWRCRGG 191
            HG    C GG
Sbjct: 180 EHG--LHCSGG 188

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Spinacia oleracea (taxid: 3562)

>sp|Q39258|VATE1_ARATH V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2

 Score =  281 bits (718), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 140/191 (73%), Positives = 164/191 (85%), Gaps = 2/191 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEK
Sbjct: 1   MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           Q ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ
Sbjct: 61  QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
            LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+LPP P  ++
Sbjct: 121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFLPPPPKSND 180

Query: 181 AHGPSWRCRGG 191
            HG    C GG
Sbjct: 181 PHG--LHCSGG 189

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. Required for Golgi organization and vacuole function in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40272|VATE_MESCR V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1

 Score =  270 bits (690), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 143/191 (74%), Positives = 160/191 (83%), Gaps = 3/191 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MND DV  QIQQMVRF+RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK K
Sbjct: 1   MNDTDVQNQIQQMVRFMRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKAK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++R+KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE+L VS DH+ Y+ LLK LIVQ
Sbjct: 61  QVDVRRKIEYSMQLNASRIKVLQAQDDLVNAMKEAASKELLLVSGDHHQYRNLLKELIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCR++D H V  VL SA+EEY +K  V  PE+IVD  I+LPP P  ++
Sbjct: 121 SLLRLKEPAVLLRCREEDKHHVHRVLHSAREEYGEKACVSHPEVIVD-DIHLPPAPTSYD 179

Query: 181 AHGPSWRCRGG 191
           +H  S  C GG
Sbjct: 180 SHELS--CSGG 188

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|P0CAN7|VATE3_ARATH V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1

 Score =  266 bits (680), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 139/197 (70%), Positives = 161/197 (81%), Gaps = 8/197 (4%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct: 1   MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSR------DHNSYKKLL 114
           QV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LL
Sbjct: 61  QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120

Query: 115 KGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPP 174
           K LIVQ LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+LPP
Sbjct: 121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFLPP 180

Query: 175 GPGHHNAHGPSWRCRGG 191
            P   + H  S  C GG
Sbjct: 181 APSDDDPHALS--CAGG 195

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9Z8|VATE2_ARATH V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1

 Score =  246 bits (627), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 126/193 (65%), Positives = 160/193 (82%), Gaps = 4/193 (2%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK K
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++
Sbjct: 61  QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY--LPPGPGH 178
           SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++   PP P  
Sbjct: 121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFLPPPPNPKL 180

Query: 179 HNAHGPSWRCRGG 191
            ++H P   C GG
Sbjct: 181 PDSHDP--HCSGG 191

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|P31402|VATE_MANSE V-type proton ATPase subunit E OS=Manduca sexta GN=VHA26 PE=2 SV=1

 Score =  147 bits (371), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 120/174 (68%), Gaps = 1/174 (0%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEK 62

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE++KKI+ S  LN +R+KVL+ ++D V N+++ A K +  V +D   Y  LL  LIVQ
Sbjct: 63  QVELQKKIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDIKLYSDLLVTLIVQ 122

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPP 174
           +L +L EP V LR R+ D  LVES+L  A+++Y  K++     + +D+  +LPP
Sbjct: 123 ALFQLVEPTVTLRVRQADKALVESLLGRAQQDYKAKIK-KDVVLKIDNENFLPP 175

The vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. This subunit is essential for its assembly or catalytic function. V-ATPase is responsible for energizing electrophoretic K(+)/2H(+) antiport by generating a transmembrane voltage of more than 200mV.

Manduca sexta (taxid: 7130)

>sp|P50518|VATE1_MOUSE V-type proton ATPase subunit E 1 OS=Mus musculus GN=Atp6v1e1 PE=1 SV=2

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/175 (45%), Positives = 120/175 (68%), Gaps = 5/175 (2%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct: 3   LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct: 63  QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYLP 173
            L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YLP
Sbjct: 123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQEAYLP 174

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
12585474	230	RecName: Full=V-type proton ATPase subun	0.954	0.826	0.979	1e-102
12585492	230	RecName: Full=V-type proton ATPase subun	0.954	0.826	0.973	1e-101
255537687	230	vacuolar ATP synthase subunit E, putativ	0.949	0.821	0.842	2e-87
225426050	230	PREDICTED: V-type proton ATPase subunit	0.949	0.821	0.848	4e-86
118488420	229	unknown [Populus trichocarpa]	0.949	0.825	0.832	5e-85
224118820	229	predicted protein [Populus trichocarpa]	0.949	0.825	0.832	6e-85
224123646	229	predicted protein [Populus trichocarpa]	0.949	0.825	0.832	6e-84
226496896	230	uncharacterized protein LOC100273417 [Ze	0.954	0.826	0.807	9e-81
324331819	229	vacuolar ATP synthase subunit [Camellia	0.949	0.825	0.812	3e-80
195619166	230	vacuolar ATP synthase subunit E [Zea may	0.954	0.826	0.802	5e-80

>gi|12585474|sp|Q9MB46.1|VATE_CITUN RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=Vacuolar proton pump subunit E gi|6729085|dbj|BAA89661.1| vacuolar H+-ATPase E subunit-1 [Citrus unshiu]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/192 (97%), Positives = 188/192 (97%), Gaps = 2/192 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSWRCRGGF 192
           AHGPS  C GG 
Sbjct: 181 AHGPS--CSGGV 190

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12585492|sp|Q9SWE7.1|VATE_CITLI RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=ClVE-1; AltName: Full=Vacuolar proton pump subunit E gi|5733660|gb|AAD49706.1| vacuolar V-H+ATPase subunit E [Citrus limon]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/192 (97%), Positives = 187/192 (97%), Gaps = 2/192 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLK LIVQ
Sbjct: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180

Query: 181 AHGPSWRCRGGF 192
           AHGPS  C GG 
Sbjct: 181 AHGPS--CSGGV 190

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537687|ref|XP_002509910.1| vacuolar ATP synthase subunit E, putative [Ricinus communis] gi|223549809|gb|EEF51297.1| vacuolar ATP synthase subunit E, putative [Ricinus communis]

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 161/191 (84%), Positives = 177/191 (92%), Gaps = 2/191 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK+RQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKVRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE+RKKIEYSMQLNASRIKVLQAQDD+V+ M EAA+K++LNVSRDH+ Y+KLLK LIVQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDVVNAMKEAATKDLLNVSRDHHVYRKLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDD HL+ESVL+SAKEEYA+K+ VH PEIIVD+H++LPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDLHLLESVLDSAKEEYAEKVNVHAPEIIVDNHVFLPPAPSHHN 180

Query: 181 AHGPSWRCRGG 191
            HGP   C GG
Sbjct: 181 VHGPY--CSGG 189

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426050|ref|XP_002274995.1| PREDICTED: V-type proton ATPase subunit E [Vitis vinifera] gi|297742293|emb|CBI34442.3| unnamed protein product [Vitis vinifera]

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 162/191 (84%), Positives = 176/191 (92%), Gaps = 2/191 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV+IRKKIEYSMQLNASRIKVLQAQDDLVS+M EAASKE+L+VS DH+ YK+LL+ L+VQ
Sbjct: 61  QVDIRKKIEYSMQLNASRIKVLQAQDDLVSSMKEAASKELLHVSHDHHVYKRLLRDLVVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDD HLVES+L+SAK+EYA K  V+PPEIIVDH +YLPP P HH+
Sbjct: 121 SLLRLKEPAVLLRCRKDDLHLVESILDSAKDEYAGKANVYPPEIIVDHQVYLPPAPSHHH 180

Query: 181 AHGPSWRCRGG 191
           AHGP   C GG
Sbjct: 181 AHGPF--CSGG 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488420|gb|ABK96025.1| unknown [Populus trichocarpa]

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 159/191 (83%), Positives = 173/191 (90%), Gaps = 2/191 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A K++LNVS+ H+ YK LLK LIVQ
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDVVNSMKDVAGKDLLNVSQHHHRYKHLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVL SAKEEYA+K  V+PPE+IVDH +YLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLNSAKEEYAEKANVYPPEVIVDHDVYLPPAPSHHN 180

Query: 181 AHGPSWRCRGG 191
           AHGP   C GG
Sbjct: 181 AHGPF--CSGG 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118820|ref|XP_002331357.1| predicted protein [Populus trichocarpa] gi|222874395|gb|EEF11526.1| predicted protein [Populus trichocarpa]

 Score =  318 bits (816), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 159/191 (83%), Positives = 173/191 (90%), Gaps = 2/191 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A K++LNVS+ H+ YK LLK LIVQ
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDVVNSMKDVAGKDLLNVSQHHHRYKHLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDHHLVESVL SAKEEYA+K  V+PPE+IVDH +YLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHHLVESVLHSAKEEYAEKANVYPPEVIVDHDVYLPPAPSHHN 180

Query: 181 AHGPSWRCRGG 191
           AHGP   C GG
Sbjct: 181 AHGPF--CSGG 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123646|ref|XP_002319131.1| predicted protein [Populus trichocarpa] gi|118481235|gb|ABK92567.1| unknown [Populus trichocarpa] gi|118486319|gb|ABK95001.1| unknown [Populus trichocarpa] gi|222857507|gb|EEE95054.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (807), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 159/191 (83%), Positives = 173/191 (90%), Gaps = 2/191 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEI VSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEILVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QV++RKKIEYSMQLNASRIKVLQAQDD+V++M + A KE+LNVS++ + YK LLK LIVQ
Sbjct: 61  QVQVRKKIEYSMQLNASRIKVLQAQDDMVNSMKDGAGKELLNVSQNQHHYKNLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRKDDH+LVESVL SAK+EYA+K  V PPEIIVDH+IYLPP P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKDDHNLVESVLHSAKDEYAEKANVFPPEIIVDHNIYLPPAPSHHN 180

Query: 181 AHGPSWRCRGG 191
           AHG S  C GG
Sbjct: 181 AHGLS--CSGG 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496896|ref|NP_001141326.1| uncharacterized protein LOC100273417 [Zea mays] gi|194703988|gb|ACF86078.1| unknown [Zea mays] gi|413950812|gb|AFW83461.1| hypothetical protein ZEAMMB73_442651 [Zea mays]

 Score =  305 bits (780), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 155/192 (80%), Positives = 165/192 (85%), Gaps = 2/192 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEA+EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEADEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE+RKKIEYSMQLNASRIKVLQAQDDLV+ M + A KE+L VS +H+ YK LLK LI+Q
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDLVNKMKDDAMKELLLVSHNHHEYKNLLKDLIIQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
            LLRLKEPAVLLRCRKDDHH VESVL SAK EYA K  VH PEI VDH +YLPP P HH+
Sbjct: 121 GLLRLKEPAVLLRCRKDDHHHVESVLHSAKHEYASKADVHEPEIFVDHDVYLPPAPSHHD 180

Query: 181 AHGPSWRCRGGF 192
           AHG    C GG 
Sbjct: 181 AHG--QFCSGGI 190

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|324331819|gb|ADY38690.1| vacuolar ATP synthase subunit [Camellia sinensis]

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 156/192 (81%), Positives = 171/192 (89%), Gaps = 3/192 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE+R+KIEYSMQLNASRIKVLQAQDD+V++M +AA+KE+LNVS DH+ Y+KLLK LIVQ
Sbjct: 61  QVEVRRKIEYSMQLNASRIKVLQAQDDVVNSMKDAAAKELLNVSHDHHVYRKLLKELIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
           SLLRLKEPAVLLRCRK+D + VE V+ SAKEEYA K +VH PEI+VD  IYLP  P HHN
Sbjct: 121 SLLRLKEPAVLLRCRKEDLNHVEHVVHSAKEEYADKAKVHAPEIVVD-SIYLPAAPSHHN 179

Query: 181 AHGPSWRCRGGF 192
           AHGP   C GG 
Sbjct: 180 AHGPF--CSGGI 189

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195619166|gb|ACG31413.1| vacuolar ATP synthase subunit E [Zea mays] gi|223946837|gb|ACN27502.1| unknown [Zea mays]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 154/192 (80%), Positives = 165/192 (85%), Gaps = 2/192 (1%)

Query: 1   MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
           MNDADV+KQIQQMVRFIRQEA+EKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK
Sbjct: 1   MNDADVAKQIQQMVRFIRQEADEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60

Query: 61  QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
           QVE+RKKIEYSMQLNASRIKVLQAQDDLV+ M + A KE+L VS +H+ YK LLK LIVQ
Sbjct: 61  QVEVRKKIEYSMQLNASRIKVLQAQDDLVNKMKDDAMKELLLVSHNHHEYKNLLKDLIVQ 120

Query: 121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHN 180
            LLRLKEPAVLLRCRK+DHH VESVL SAK EYA K  VH PEI VDH +YLPP P HH+
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKHEYASKADVHEPEIFVDHDVYLPPAPSHHD 180

Query: 181 AHGPSWRCRGGF 192
           AHG    C GG 
Sbjct: 181 AHG--QFCSGGI 190

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2136088	230	TUF "AT4G11150" [Arabidopsis t	0.864	0.747	0.767	1.8e-64
TAIR|locus:2024527	237	VHA-E3 "AT1G64200" [Arabidopsi	0.864	0.725	0.735	6.2e-62
TAIR|locus:2077893	235	VHA-E2 "vacuolar H+-ATPase sub	0.864	0.731	0.691	1.3e-59
FB|FBgn0015324	226	Vha26 "Vacuolar H[+]-ATPase 26	0.854	0.752	0.473	4.4e-36
UNIPROTKB|P11019	226	ATP6V1E1 "V-type proton ATPase	0.849	0.747	0.454	3.1e-35
UNIPROTKB|Q58DR7	202	ATP6V1E1 "ATPase, H+ transport	0.849	0.836	0.454	3.1e-35
MGI|MGI:894326	226	Atp6v1e1 "ATPase, H+ transport	0.849	0.747	0.454	3.1e-35
UNIPROTKB|E2R1R4	226	ATP6V1E1 "Uncharacterized prot	0.849	0.747	0.454	4e-35
UNIPROTKB|P36543	226	ATP6V1E1 "V-type proton ATPase	0.849	0.747	0.454	5.1e-35
UNIPROTKB|F1SHR3	226	ATP6V1E1 "V-type proton ATPase	0.849	0.747	0.454	5.1e-35

TAIR|locus:2136088 TUF "AT4G11150" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 132/172 (76%), Positives = 154/172 (89%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MND DVS+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ+YE+KEK
Sbjct:     1 MNDGDVSRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQDYEKKEK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q ++RKKI+YSMQLNASRIKVLQAQDD+V+ M + A+K++LNVSRD  +YK+LLK LIVQ
Sbjct:    61 QADVRKKIDYSMQLNASRIKVLQAQDDIVNAMKDQAAKDLLNVSRDEYAYKQLLKDLIVQ 120

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 172
              LLRLKEP+VLLRCR++D  LVE+VL+ AKEEYA K +VH PE+ VD  I+L
Sbjct:   121 CLLRLKEPSVLLRCREEDLGLVEAVLDDAKEEYAGKAKVHAPEVAVDTKIFL 172

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA;TAS

GO:0009409 "response to cold" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0007030 "Golgi organization" evidence=RCA;IMP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=IMP

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2024527 VHA-E3 "AT1G64200" [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 131/178 (73%), Positives = 152/178 (85%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MNDAD S QIQQMVRFIRQEAEEKANEIS+S+EEEFNIEKLQLVEAEKKKIRQEYE+KEK
Sbjct:     1 MNDADASIQIQQMVRFIRQEAEEKANEISISSEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRD------HNSYKKLL 114
             QV++RKKI+YSMQLNASRIKVLQAQDD+V+ M E A+K++L VS+       H+ YK LL
Sbjct:    61 QVDVRKKIDYSMQLNASRIKVLQAQDDIVNAMKEEAAKQLLKVSQHGFFNHHHHQYKHLL 120

Query:   115 KGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 172
             K LIVQ LLRLKEPAVLLRCR++D  +VES+L+ A EEY +K +VH PEIIVD  I+L
Sbjct:   121 KDLIVQCLLRLKEPAVLLRCREEDLDIVESMLDDASEEYCKKAKVHAPEIIVDKDIFL 178

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2077893 VHA-E2 "vacuolar H+-ATPase subunit E isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 119/172 (69%), Positives = 151/172 (87%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             MNDADVSKQIQQMVRFIRQEAEEKANEIS+SAEEEFNIE+LQL+E+ K+K+RQ+Y+RK K
Sbjct:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISISAEEEFNIERLQLLESAKRKLRQDYDRKLK 60

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             QV+IRK+I+YS QLNASRIK LQAQDD+V+ M ++A+K++L VS D N+YKKLLK LI++
Sbjct:    61 QVDIRKRIDYSTQLNASRIKYLQAQDDVVTAMKDSAAKDLLRVSNDKNNYKKLLKSLIIE 120

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 172
             SLLRLKEP+VLLRCR+ D  +VESV+E AK +YA+K +V  P+I +D  ++L
Sbjct:   121 SLLRLKEPSVLLRCREMDKKVVESVIEDAKRQYAEKAKVGSPKITIDEKVFL 172

GO:0005634 "nucleus" evidence=ISM

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

FB|FBgn0015324 Vha26 "Vacuolar H[+]-ATPase 26kD subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 82/173 (47%), Positives = 123/173 (71%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             QVE++KKI+ S  LN +R+KVL+ ++D VS++++ A K +  V+++ + Y+ +L  LIVQ
Sbjct:    63 QVELQKKIQSSNMLNQARLKVLKVREDHVSSVLDDARKRLGEVTKNQSEYETVLTKLIVQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP-EIIVDHHIYL 172
              L ++ EP V+LRCR+ D  LV +VL +A E+Y  K Q++   E+ +D   +L
Sbjct:   123 GLFQIMEPKVILRCREVDVPLVRNVLPAAVEQY--KAQINQNVELFIDEKDFL 173

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P11019 ATP6V1E1 "V-type proton ATPase subunit E 1" [Bos taurus (taxid:9913)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 79/174 (45%), Positives = 119/174 (68%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYL 172
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDV---DVQIDQEAYL 173

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005768 "endosome" evidence=ISS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

UNIPROTKB|Q58DR7 ATP6V1E1 "ATPase, H+ transporting, lysosomal 31kD, V1 subunit E isoform 1" [Bos taurus (taxid:9913)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 79/174 (45%), Positives = 119/174 (68%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYL 172
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKVATKRDV---DVQIDQEAYL 173

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

MGI|MGI:894326 Atp6v1e1 "ATPase, H+ transporting, lysosomal V1 subunit E1" [Mus musculus (taxid:10090)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 79/174 (45%), Positives = 119/174 (68%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYL 172
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQEAYL 173

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IGI

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IGI

GO:0015992 "proton transport" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|E2R1R4 ATP6V1E1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 79/174 (45%), Positives = 119/174 (68%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYL 172
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKKDV---DVQIDQESYL 173

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|P36543 ATP6V1E1 "V-type proton ATPase subunit E 1" [Homo sapiens (taxid:9606)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 79/174 (45%), Positives = 119/174 (68%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLSKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYL 172
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPMYKIATKNDV---DVQIDQESYL 173

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005768 "endosome" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;TAS

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0016469 "proton-transporting two-sector ATPase complex" evidence=TAS

GO:0015992 "proton transport" evidence=TAS

GO:0006879 "cellular iron ion homeostasis" evidence=TAS

GO:0008286 "insulin receptor signaling pathway" evidence=TAS

GO:0033572 "transferrin transport" evidence=TAS

GO:0051701 "interaction with host" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0090382 "phagosome maturation" evidence=TAS

UNIPROTKB|F1SHR3 ATP6V1E1 "V-type proton ATPase subunit E 1" [Sus scrofa (taxid:9823)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 79/174 (45%), Positives = 119/174 (68%)

Query:     1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
             ++DADV KQI+ M+ FI QEA EKA EI   AEEEFNIEK +LV+ ++ KI + YE+KEK
Sbjct:     3 LSDADVQKQIKHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQTQRLKIMEYYEKKEK 62

Query:    61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQ 120
             Q+E +KKI+ S  +N +R+KVL+A+DDL+++++  A + +  V +D   Y+ LL GL++Q
Sbjct:    63 QIEQQKKIQMSNLMNQARLKVLRARDDLITDLLNEAKQRLGKVVKDTTRYQVLLDGLVLQ 122

Query:   121 SLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY--AQKLQVHPPEIIVDHHIYL 172
              L +L EP +++RCRK D  LV++ ++ A   Y  A K  V   ++ +D   YL
Sbjct:   123 GLYQLLEPRMIVRCRKQDFPLVKAAVQKAIPVYKIATKRDV---DVQIDQEAYL 173

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005902 "microvillus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O00780	VATE_DICDI	No assigned EC number	0.3717	0.9396	0.8025	yes	no
Q40272	VATE_MESCR	No assigned EC number	0.7486	0.9447	0.8318	N/A	no
O23948	VATE_GOSHI	No assigned EC number	0.7989	0.9447	0.7932	N/A	no
Q39258	VATE1_ARATH	No assigned EC number	0.7329	0.9497	0.8217	yes	no
Q9SWE7	VATE_CITLI	No assigned EC number	0.9739	0.9547	0.8260	N/A	no
Q41396	VATE_SPIOL	No assigned EC number	0.7801	0.9447	0.8209	N/A	no
Q9MB46	VATE_CITUN	No assigned EC number	0.9791	0.9547	0.8260	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002474001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (230 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00029599001	SubName- Full=Chromosome chr9 scaffold_49, whole genome shotgun sequence; (849 aa)						•			0.899
	GSVIVG00026188001	SubName- Full=Putative uncharacterized protein (Chromosome chr15 scaffold_37, whole genome shot [...] (222 aa)						•			0.899
	GSVIVG00024902001	SubName- Full=Chromosome chr4 scaffold_32, whole genome shotgun sequence; (232 aa)						•			0.899
	GSVIVG00022618001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (606 aa)						•			0.899
	GSVIVG00013522001	SubName- Full=Chromosome undetermined scaffold_495, whole genome shotgun sequence; (285 aa)						•			0.899
	VPP	SubName- Full=Chromosome chr11 scaffold_170, whole genome shotgun sequence; (764 aa)						•			0.899
	GSVIVG00003295001	SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (767 aa)						•			0.899
	GSVIVG00000475001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (214 aa)						•			0.899
	GSVIVG00018828001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (261 aa)	•			•	•	•	•		0.768
	GSVIVG00015498001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (509 aa)	•			•	•	•	•		0.643

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
pfam01991	195	pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) su	5e-55
COG1390	194	COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su	1e-14
PRK03963	198	PRK03963, PRK03963, V-type ATP synthase subunit E;	4e-04
PRK02292	188	PRK02292, PRK02292, V-type ATP synthase subunit E;	0.002

>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit

 Score =  172 bits (439), Expect = 5e-55
 Identities = 76/152 (50%), Positives = 104/152 (68%)

Query: 16  FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLN 75
           FIRQEAEEKA EI   AEEEF IEK + VE  +KKI + YE+KEKQ E+ K+I  S   N
Sbjct: 1   FIRQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKN 60

Query: 76  ASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCR 135
            +R+KVL A+++L+ ++ E A + + N+S D + YK LLK LI Q+L++L EP V++R R
Sbjct: 61  EARLKVLNAREELLDSVFEEAKERLANLSEDKDEYKDLLKDLIKQALVKLGEPKVIVRSR 120

Query: 136 KDDHHLVESVLESAKEEYAQKLQVHPPEIIVD 167
           ++D  LV+S L+ AKEEY +K      E I D
Sbjct: 121 EEDEELVKSALDEAKEEYKEKTGKDTVETIGD 152

This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit. Length = 195

>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 36/141 (25%), Positives = 79/141 (56%), Gaps = 2/141 (1%)

Query: 10  IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE 69
           ++++++ I +EAEE+A EI   A EE    K +     ++ I +   + EK+ E  ++  
Sbjct: 4   LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRI 63

Query: 70  YSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPA 129
            S  L  +R K+L+A+++++ ++ EA  +++ N++ D     + L+ L++++L +L    
Sbjct: 64  ISSALLEARRKLLEAKEEILESVFEAVEEKLRNIASD--PEYESLQELLIEALEKLLGGE 121

Query: 130 VLLRCRKDDHHLVESVLESAK 150
           +++   + D  LVE +L   K
Sbjct: 122 LVVYLNEKDKALVEQILRELK 142

Length = 194

>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 8/145 (5%)

Query: 11  QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK--KIRQEYERKEK-QVEIRKK 67
           + +++ I +EAE+K   I   A++E   EK++  EA K+     +   RK K Q E+ K+
Sbjct: 5   ELIIQEINREAEQKIEYILEEAQKE--AEKIK-EEARKRAESKAEWILRKAKTQAELEKQ 61

Query: 68  IEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE 127
              +      R K L  Q++L+S ++EA  + +  +  D   Y + LK L  +++  L E
Sbjct: 62  RIIANAKLEVRRKRLAVQEELISEVLEAVRERLAELPEDE--YFETLKALTKEAVEELGE 119

Query: 128 PAVLLRCRKDDHHLVESVLESAKEE 152
             V++R  +    L++S LE  ++E
Sbjct: 120 DKVVVRSNERTLKLIDSRLEEIRDE 144

Length = 198

>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 22/153 (14%)

Query: 5   DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERK-EKQVE 63
           D+  + +     IR EA+E+A EI   AE             + ++I ++ E + E+++E
Sbjct: 9   DIRDEARARASEIRAEADEEAEEIIAEAEA------------DAEEILEDREAEAEREIE 56

Query: 64  -IRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSL 122
            +R++   S +L A R + L A+ +++ ++      E+ ++  D    ++L K L+  + 
Sbjct: 57  QLREQELSSAKLEAKRER-LNARKEVLEDVRNQVEDEIASLDGDKR--EELTKSLLDAA- 112

Query: 123 LRLKEPAVLLRCRKDDHHLVESVLESAKE-EYA 154
                  V +  RKDD  LV+S+L      EYA
Sbjct: 113 ---DADGVRVYSRKDDEDLVKSLLSDYDGLEYA 142

Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
KOG1664	220	consensus Vacuolar H+-ATPase V1 sector, subunit E	100.0
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	99.93
PRK03963	198	V-type ATP synthase subunit E; Provisional	99.91
PRK01194	185	V-type ATP synthase subunit E; Provisional	99.9
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	99.88
PRK02292	188	V-type ATP synthase subunit E; Provisional	99.83
PRK01558	198	V-type ATP synthase subunit E; Provisional	99.6
PRK01005	207	V-type ATP synthase subunit E; Provisional	99.08
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	98.8
PRK06937	204	type III secretion system protein; Reviewed	98.79
PRK09098	233	type III secretion system protein HrpB; Validated	98.7
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	98.67
PRK06328	223	type III secretion system protein; Validated	98.53
PRK06669	281	fliH flagellar assembly protein H; Validated	98.52
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	98.5
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	98.32
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	97.81
PF06635	207	NolV: Nodulation protein NolV; InterPro: IPR010586	97.74
PRK08475	167	F0F1 ATP synthase subunit B; Validated	97.53
PRK13386	236	fliH flagellar assembly protein H; Provisional	97.38
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	97.28
PRK05687	246	fliH flagellar assembly protein H; Validated	97.06
PRK06032	199	fliH flagellar assembly protein H; Validated	96.21
PRK01194	185	V-type ATP synthase subunit E; Provisional	95.39
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	95.3
PRK03963	198	V-type ATP synthase subunit E; Provisional	94.89
CHL00019	184	atpF ATP synthase CF0 B subunit	94.64
PRK08404	103	V-type ATP synthase subunit H; Validated	94.43
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	94.31
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	94.0
PRK07352	174	F0F1 ATP synthase subunit B; Validated	93.95
PRK01558	198	V-type ATP synthase subunit E; Provisional	93.26
PRK06231	205	F0F1 ATP synthase subunit B; Validated	93.16
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	92.61
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	91.7
PRK01005	207	V-type ATP synthase subunit E; Provisional	91.02
PRK00106	535	hypothetical protein; Provisional	90.91
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	90.41
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	90.12
PRK08404	103	V-type ATP synthase subunit H; Validated	89.69
PRK02292	188	V-type ATP synthase subunit E; Provisional	89.47
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	89.43
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	89.19
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	89.16
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	89.15
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	89.12
PRK05759	156	F0F1 ATP synthase subunit B; Validated	88.79
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	87.67
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	87.59
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	87.07
PRK15354	224	type III secretion system protein SsaK; Provisiona	86.92
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	86.88
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	86.38
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	85.97
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	85.68
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	85.32
PRK12704	520	phosphodiesterase; Provisional	85.24
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	85.1
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	84.53
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	83.62
PRK09173	159	F0F1 ATP synthase subunit B; Validated	83.17
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	82.14
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	80.9
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	80.6

>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]

Probab=100.00  E-value=7.9e-57  Score=371.96  Aligned_cols=184  Identities=54%  Similarity=0.797  Sum_probs=181.0

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q 029081            1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK   80 (199)
Q Consensus         1 m~d~~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~   80 (199)
                      |||++|++||++|++||+|||+|||+||..+|+|||||||++||++++.+|+.+|++|+||++++++|+.|+++|++||+
T Consensus         1 lsD~dv~kqi~~M~aFI~qEA~EKA~EI~~kAeeEfnIEK~rlV~~q~~kI~~~yekKeKqve~~kkI~~S~~lN~~RlK   80 (220)
T KOG1664|consen    1 LSDADVSKQIKHMVAFIRQEAEEKAKEIDAKAEEEFNIEKGRLVQEQRLKIMQYYEKKEKQVELQKKIAKSNLLNQSRLK   80 (220)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029081           81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH  160 (199)
Q Consensus        81 ~L~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~  160 (199)
                      +|++|+++|+.+|++|+++|..++.|+..|+.+|++||+|||++|+||.|+||||++|..+|++++++|..+|...+|..
T Consensus        81 vL~ar~d~i~~i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~~  160 (220)
T KOG1664|consen   81 VLRARDDIIDDILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGVG  160 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCeEeeccccCCCCCCCCCCCCCCCCccccceEEecC
Q 029081          161 PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWED  197 (199)
Q Consensus       161 ~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~  197 (199)
                       +.+.+|++.|||+          +  |+|||+|++-
T Consensus       161 -~e~~id~~~fL~~----------~--~~GGVvl~s~  184 (220)
T KOG1664|consen  161 -VEVQIDKKDFLPP----------D--VAGGVVLYSR  184 (220)
T ss_pred             -ceeeechhccCCc----------c--ccCCeEEEcC
Confidence             7999999999997          6  9999999874

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.93  E-value=3.4e-25  Score=181.88  Aligned_cols=168  Identities=32%  Similarity=0.401  Sum_probs=149.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (199)
Q Consensus        16 fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~   95 (199)
                      ||.++|+.+|++|..+|+++++..+.....+....+...+++..++++..+....|...+++|..+|.+|+++|+++|+.
T Consensus         1 ~I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~   80 (198)
T PF01991_consen    1 EIEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEE   80 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999988888888999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccccCCCCC
Q 029081           96 ASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPG  175 (199)
Q Consensus        96 a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~~~  175 (199)
                      ++++|.+++.+++.|..+|.+||.+++..+++++++|+|++.|.++++.+++.+...|+..+|..++....+. .||+  
T Consensus        81 ~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~--  157 (198)
T PF01991_consen   81 VKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DYLI--  157 (198)
T ss_dssp             HHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T----B--
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-cccC--
Confidence            9999999998876899999999999999999999999999999999999998888888777776533444443 4554  


Q ss_pred             CCCCCCCCCCCccccceEEecC
Q 029081          176 PGHHNAHGPSWRCRGGFSRWED  197 (199)
Q Consensus       176 ~~~~~~~~~~~~~~GGvvl~~~  197 (199)
                               +  |+|||++.+.
T Consensus       158 ---------~--~~GG~il~~~  168 (198)
T PF01991_consen  158 ---------D--IIGGFILESE  168 (198)
T ss_dssp             ---------S--SSSEEEEECS
T ss_pred             ---------C--ccceEEEEEC
Confidence                     4  9999999874

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=99.91  E-value=5.2e-22  Score=164.62  Aligned_cols=164  Identities=24%  Similarity=0.299  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 029081           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLV   89 (199)
Q Consensus        10 i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l   89 (199)
                      |++++.-|+.+|+.++++|...|..+.+.....+..+........-++-..++++.++...|+..++.|+.+|.+|++++
T Consensus         4 l~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~   83 (198)
T PRK03963          4 AELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELI   83 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999884444443333333333445555568888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccc
Q 029081           90 SNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHH  169 (199)
Q Consensus        90 ~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~  169 (199)
                      +++|+.|+++|.+++.+  .|+.+|.+||.+|+..|++++++|+|+|.|..++++.++.+.+    .+| . +++.++. 
T Consensus        84 ~~v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~----~~~-~-~~i~~~~-  154 (198)
T PRK03963         84 SEVLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRD----ELG-D-VEIELGE-  154 (198)
T ss_pred             HHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHH----HhC-C-eEEEECC-
Confidence            99999999999999876  8999999999999999999999999999999999998887753    445 2 5666653 


Q ss_pred             cCCCCCCCCCCCCCCCCccccceEEecC
Q 029081          170 IYLPPGPGHHNAHGPSWRCRGGFSRWED  197 (199)
Q Consensus       170 ~~L~~~~~~~~~~~~~~~~~GGvvl~~~  197 (199)
                         |.          +  |.|||+|.+.
T Consensus       155 ---~~----------~--~~GGvil~s~  167 (198)
T PRK03963        155 ---PI----------E--TIGGVIVETK  167 (198)
T ss_pred             ---CC----------C--ccceEEEEeC
Confidence               11          4  9999999854

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=99.90  E-value=7.4e-22  Score=163.55  Aligned_cols=129  Identities=16%  Similarity=0.315  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh-hHHHHHHHHHhHHHHHHHHHHHHHH
Q 029081           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK---KIRQEYERKEK-QVEIRKKIEYSMQLNASRIKVLQAQ   85 (199)
Q Consensus        10 i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~---kI~~~~~kk~k-~~e~~k~I~~S~~~n~~Rl~~L~ar   85 (199)
                      +.+++.-|.++|+.+|++|...|+.+++    .|+.....   ++...|..+.+ +++..++...|++.-++|+.+|++|
T Consensus         3 le~i~~~I~~ea~~~a~~I~~eA~~~ae----ei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~ar   78 (185)
T PRK01194          3 LEDVIKDIEKSREEKKKEINDEYSKRIE----KLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKR   78 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            6789999999999999999999999988    77766444   45555544444 4666666677888889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHH
Q 029081           86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVES  144 (199)
Q Consensus        86 ~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~  144 (199)
                      +++|+++|+.|.++|.++++++ .|+++|++||.+|+.. .+|.++|+|++.|..+|++
T Consensus        79 ee~I~~v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~-l~~~~~v~~~~~D~~~i~~  135 (185)
T PRK01194         79 REILKDYLDIAYEHLMNITKSK-EYDSILNKMIEVAIKT-LGEDCIIKVSESDKKKINN  135 (185)
T ss_pred             HHHHHHHHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHh-cCCCeEEEEcHHhHHHHHh
Confidence            9999999999999999999765 8999999999999999 7799999999999999865

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=99.88  E-value=1.1e-20  Score=157.87  Aligned_cols=138  Identities=26%  Similarity=0.410  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 029081            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL   88 (199)
Q Consensus         9 ~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~   88 (199)
                      .++.|++||.++|+++|++|...|.++++..+.+........+...+.+..+++++.++...|++.+++|+..|++++++
T Consensus         3 ~~e~~i~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~   82 (194)
T COG1390           3 ELEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEI   82 (194)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHH
Q 029081           89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLES  148 (199)
Q Consensus        89 l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~  148 (199)
                      |+.+|+.+.++|.+++.++ .|.. |..|+.+++.++.+|+++|++++.|.++|.+++.+
T Consensus        83 l~~~~~~~~e~L~~i~~~~-~~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~  140 (194)
T COG1390          83 LESVFEAVEEKLRNIASDP-EYES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILRE  140 (194)
T ss_pred             HHHHHHHHHHHHHcCcCCc-chHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhh
Confidence            9999999999999999987 4444 99999999999999999999999999998777765

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=99.83  E-value=1.2e-18  Score=143.59  Aligned_cols=130  Identities=25%  Similarity=0.383  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh-HHHHHHHHHhHHHHHHHHHHHHHH
Q 029081           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK---IRQEYERKEKQ-VEIRKKIEYSMQLNASRIKVLQAQ   85 (199)
Q Consensus        10 i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~k---I~~~~~kk~k~-~e~~k~I~~S~~~n~~Rl~~L~ar   85 (199)
                      +..+++-|+++|+.++++|...|+.+.+    .|+.+...+   |...+..+... +..-.+...|...+.+|+.+|.+|
T Consensus         3 l~~i~~~I~~~a~~e~~~I~~ea~~~~~----~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r   78 (188)
T PRK02292          3 LETVVEDIRDEARARASEIRAEADEEAE----EIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNAR   78 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999999988    787776655   44444433333 444456779999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHH
Q 029081           86 DDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESA  149 (199)
Q Consensus        86 ~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~  149 (199)
                      +++|+++|..|+++|.+++.+  .|..+|.+||.+|    .+++++|+|+|.|..+++.++..+
T Consensus        79 ~~~l~~v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~~  136 (188)
T PRK02292         79 KEVLEDVRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSDY  136 (188)
T ss_pred             HHHHHHHHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHhc
Confidence            999999999999999999975  8999999999998    678999999999999999887753

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=99.60  E-value=5.4e-13  Score=111.58  Aligned_cols=165  Identities=21%  Similarity=0.233  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 029081            3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL   82 (199)
Q Consensus         3 d~~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L   82 (199)
                      +++++.=+.+|..-|..+|+.+|++|...|+++.+    +|+.+...+......+-.++++..+++..|.+....|..+|
T Consensus         2 ~~~~~~l~dki~~~~~eeA~~eA~~Ii~eA~~eAe----~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll   77 (198)
T PRK01558          2 QFEVKDLINKIKKDGLEEAERLANEIILEAKEEAE----EIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLI   77 (198)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999    99999888888878888888888888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCC
Q 029081           83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPP  162 (199)
Q Consensus        83 ~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~  162 (199)
                      .+++.+++.+.+.+.+.+.+.. +++.|..++..|+....   .++++.|+.++.|...+...+.   ..++..+|.   
T Consensus        78 ~~k~~i~~~~~~~~~~~~~~~~-~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~---~~~~~~l~~---  147 (198)
T PRK01558         78 SFEKSIKSLFKAALKDEVAEVY-DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILR---AALGNKLKK---  147 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHH---HHHHHHhcC---
Confidence            9999999866555555556444 56789999999999864   6688999999999888877543   334445552   


Q ss_pred             eEeeccccCCCCCCCCCCCCCCCCccccceEEecC
Q 029081          163 EIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWED  197 (199)
Q Consensus       163 ~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~  197 (199)
                      .|++..    +.          +  |.|||+|.+.
T Consensus       148 gi~i~~----~~----------~--~~gG~iv~~~  166 (198)
T PRK01558        148 GIELKP----FK----------G--ISKGFKIQQK  166 (198)
T ss_pred             CeEEcc----cC----------C--cccceEEEEc
Confidence            355543    11          4  9999999853

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=99.08  E-value=4.2e-08  Score=82.92  Aligned_cols=115  Identities=14%  Similarity=0.160  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHH
Q 029081            3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVL   82 (199)
Q Consensus         3 d~~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L   82 (199)
                      ++.++.=+++|..-|+.+|+.+|.+|...|.++.+    .|+.+.+.+....-+.-.++++..++...|++.-.+|..+|
T Consensus         7 ~~k~q~L~dki~~eiL~eA~~eA~~Il~eAk~~Ae----~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l   82 (207)
T PRK01005          7 QDKLKQICDALREETLKPAEEEAGAIVHNAKEQAK----RIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLE   82 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677778899999999999999999999999997    79999888877777788888888888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhc
Q 029081           83 QAQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRL  125 (199)
Q Consensus        83 ~ar~~~l~~l~~~a~~kL~~l-~~~~~~Yk~lL~~LI~q~l~~L  125 (199)
                      .++.++++.+|..+.++|..- ..|+    .+|.+||..-....
T Consensus        83 ~aKqevi~~vf~~a~~~lv~~~~~d~----~~l~~lI~~~v~~~  122 (207)
T PRK01005         83 SLKQAVENKIFRESLGEWLEHVLTDP----EVSAKLIQALVQAI  122 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHH
Confidence            999999999999999999875 4455    67777777555544

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=98.80  E-value=1.2e-06  Score=70.08  Aligned_cols=145  Identities=19%  Similarity=0.131  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHH
Q 029081           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQ-AQDDLVSN   91 (199)
Q Consensus        13 Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~-ar~~~l~~   91 (199)
                      --.-|..+|+.+|+.|...|+++++..+..-.++....-..++........           . .+-+.+. ....++ .
T Consensus        14 ~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~-----------~-~~~~~~~~~e~~l~-~   80 (166)
T TIGR02499        14 QAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQ-----------Q-EAEQLEASLEERLA-E   80 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H-HHHHHHHHHHHHHH-H
Confidence            356788999999999999999999876655554444333332222111111           1 0111111 223333 3


Q ss_pred             HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeecccc
Q 029081           92 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI  170 (199)
Q Consensus        92 l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e-~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~  170 (199)
                      +.-.+-+++..-.    ....++..++.+++..+.+ +.++|+|+|.|.+.++..+......    .+   +.|..|+  
T Consensus        81 l~~~~~~kil~~~----~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~~~----~~---~~i~~D~--  147 (166)
T TIGR02499        81 LVLQALEQILGEY----DEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERLAL----EP---WELEPDA--  147 (166)
T ss_pred             HHHHHHHHHhCCC----CCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHhcc----CC---eEEeeCC--
Confidence            3333333443322    3457888899999988876 6899999999999998887754221    11   2444442  


Q ss_pred             CCCCCCCCCCCCCCCCccccceEEecCC
Q 029081          171 YLPPGPGHHNAHGPSWRCRGGFSRWEDS  198 (199)
Q Consensus       171 ~L~~~~~~~~~~~~~~~~~GGvvl~~~~  198 (199)
                      .|               +.||+++.+++
T Consensus       148 ~l---------------~~G~c~vet~~  160 (166)
T TIGR02499       148 SL---------------APGACVLETES  160 (166)
T ss_pred             CC---------------CCCCEEEEeCC
Confidence            33               45999998875

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>PRK06937 type III secretion system protein; Reviewed

Probab=98.79  E-value=1.1e-06  Score=73.64  Aligned_cols=146  Identities=16%  Similarity=0.199  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR--KKIEYSMQLNASRIKVLQAQDDLVSNM   92 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~--k~I~~S~~~n~~Rl~~L~ar~~~l~~l   92 (199)
                      .-|..+|++.|++|...|+++|+..+           ..-|+....+...+  .++..+  ..+...-.-....++++=+
T Consensus        33 ~~il~~A~~~A~~i~~~A~~~~e~~~-----------~~Gy~~G~~~a~~e~~e~l~~~--~~~~~~~~~~~e~~l~~Lv   99 (204)
T PRK06937         33 EELVEAARQRAEEIEAEAQEVYEQQK-----------QLGYQAGLDEARTEQAELILET--VLQCQEFYRGVEQQMSEVV   99 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999998433           23444443332222  222222  1222222334455666656


Q ss_pred             HHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccccC
Q 029081           93 MEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY  171 (199)
Q Consensus        93 ~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e-~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~  171 (199)
                      +.-+++=|....     -..++..++.+++..+.+ +.|+|||+|.|++.|+..+......|.   |...+.|..|+  .
T Consensus       100 l~ia~kil~~~~-----~~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~---~~~~l~i~~D~--~  169 (204)
T PRK06937        100 LEAVRKILNDYD-----DVERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFP---EVGYLEVVADA--R  169 (204)
T ss_pred             HHHHHHHHhccC-----cHHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCC---CCccEEEEeCC--C
Confidence            665555554332     247888999999998876 589999999999999988776655442   22213455553  5


Q ss_pred             CCCCCCCCCCCCCCCccccceEEecCC
Q 029081          172 LPPGPGHHNAHGPSWRCRGGFSRWEDS  198 (199)
Q Consensus       172 L~~~~~~~~~~~~~~~~~GGvvl~~~~  198 (199)
                      |               +.||.++.+++
T Consensus       170 L---------------~~Ggc~iET~~  181 (204)
T PRK06937        170 L---------------DQGGCILETEV  181 (204)
T ss_pred             C---------------CCCCeEEecCC
Confidence            5               35899998875

>PRK09098 type III secretion system protein HrpB; Validated

Probab=98.70  E-value=1.2e-05  Score=69.14  Aligned_cols=152  Identities=19%  Similarity=0.148  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHH-HhHHHHHHHHHHH
Q 029081            6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR--KKIE-YSMQLNASRIKVL   82 (199)
Q Consensus         6 v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~--k~I~-~S~~~n~~Rl~~L   82 (199)
                      +-.+-+..-.-|..+|++.|++|...|.++|+..+.           .-|.....+...+  .++. .....+..+   .
T Consensus        44 ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~-----------~Gy~eG~~~a~~e~~~~~~~~~~~~~~~~---~  109 (233)
T PRK09098         44 VLAAARARAERIVAEARAQAEAILEAARREADRSAR-----------RGYAAGLRQALAEWHARGADHAFAERRAA---R  109 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence            344445555566666777777777777776663332           2333333322211  1111 111122222   2


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcC--CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029081           83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH  160 (199)
Q Consensus        83 ~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~--e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~  160 (199)
                      ..++.+++=++..+++-+...  |+    ..|-..+.+++..+.  .+.|+|||+|.|+++|...+......    .|..
T Consensus       110 ~~e~~Lv~lv~~~v~kiv~~~--d~----~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~----~g~~  179 (233)
T PRK09098        110 RMRERLAEIVAAAVEQIVLGE--DR----AALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAA----GGRN  179 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CH----HHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHh----cCCC
Confidence            247788888888887777543  33    455678889987763  46899999999999999877766443    3432


Q ss_pred             -CCeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081          161 -PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS  198 (199)
Q Consensus       161 -~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~  198 (199)
                       .+.|..|  ..|++               ||.++.++.
T Consensus       180 ~~l~Iv~D--p~L~~---------------GgCviET~~  201 (233)
T PRK09098        180 VPVEVVGD--PRLAP---------------GACVCEWDF  201 (233)
T ss_pred             cceEEEeC--CCCCC---------------CCeEEEeCC
Confidence             1344444  35643               777777764

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=98.67  E-value=2.1e-05  Score=68.07  Aligned_cols=90  Identities=18%  Similarity=0.110  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHHHHHHHHHHHHHHhCCC-
Q 029081           84 AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH-  160 (199)
Q Consensus        84 ar~~~l~~l~~~a~~kL~~l-~~~~~~Yk~lL~~LI~q~l~~L~e-~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~-  160 (199)
                      .+.++++=++.-|++=|... ..++    ..+..||.+++..+.+ +.|+|||+|.|++.|....+.+...    ++.. 
T Consensus       134 ~e~el~~La~~iAeKIi~~el~~~~----e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v~~~~~~l~~~----~~~~~  205 (255)
T TIGR03825       134 AQPLIIELACALAEKVIGVSLAEDK----NAFQALVRQVLSEVREFDEVSIYVHPHWYERVAAQKDELQSI----LPACE  205 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCH----HHHHHHHHHHHHhccCCCcEEEEECHHHHHHHHHhHHHHHhh----cCCCC
Confidence            44555555555555555543 3343    5689999999999987 5899999999999999877766444    3322 


Q ss_pred             CCeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081          161 PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS  198 (199)
Q Consensus       161 ~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~  198 (199)
                      .+.|..|+  .|               +.||+++.+++
T Consensus       206 ~i~i~~D~--~l---------------~~GgcvIEt~~  226 (255)
T TIGR03825       206 HLAVYPDE--KL---------------PDGGCYVETNF  226 (255)
T ss_pred             ceEEEeCC--CC---------------CCCCeEEEcCC
Confidence            13444443  44               45888888764

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK06328 type III secretion system protein; Validated

Probab=98.53  E-value=2.2e-05  Score=66.98  Aligned_cols=148  Identities=16%  Similarity=0.190  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEA   95 (199)
Q Consensus        16 fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~   95 (199)
                      -|...|++.|+.|...|.++++    ++-++...   +-|+....+..  ..+.  .+......-.-..+.++++=++.-
T Consensus        33 ~il~~a~~~ae~i~~ea~~e~E----~i~eeA~~---eGy~eG~~~~~--~~~~--~l~~~~~~~~~~~e~~lv~Lal~i  101 (223)
T PRK06328         33 ELLEKTKEDSEAYTQETHEECE----KLREEAKN---QGFKEGSKAWS--KQLA--FLEEETQKLREQVKEALVPLAIAS  101 (223)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888888888888888887    44444332   34444433321  1111  122222211223456677777777


Q ss_pred             HHHHHHh-hccChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccccCCC
Q 029081           96 ASKEVLN-VSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLP  173 (199)
Q Consensus        96 a~~kL~~-l~~~~~~Yk~lL~~LI~q~l~~L~e-~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~  173 (199)
                      |++=|.. +..|+    ..+..++.+|+..+.+ ..|+|||+|.|+++|+...++....+..   ...+.|..|.  .|+
T Consensus       102 a~kVi~~el~~d~----e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~---~~~~~I~~D~--~L~  172 (223)
T PRK06328        102 VKKIIGKELELHP----ETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEY---ADSLIISPKA--DVT  172 (223)
T ss_pred             HHHHHHHHHhhCH----HHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccC---CCceEEEeCC--CCC
Confidence            7666654 33333    7778999999988876 4799999999999998876655444332   1224555553  553


Q ss_pred             CCCCCCCCCCCCCccccceEEecCC
Q 029081          174 PGPGHHNAHGPSWRCRGGFSRWEDS  198 (199)
Q Consensus       174 ~~~~~~~~~~~~~~~~GGvvl~~~~  198 (199)
                                     .||.++.+++
T Consensus       173 ---------------~GgCiIET~~  182 (223)
T PRK06328        173 ---------------PGGCIIETEA  182 (223)
T ss_pred             ---------------CCCeEEEeCC
Confidence                           3888888774

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=98.52  E-value=7.6e-05  Score=65.30  Aligned_cols=93  Identities=17%  Similarity=0.257  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHHHHHHHHHHHHHHhCCCC
Q 029081           83 QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP  161 (199)
Q Consensus        83 ~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e-~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~  161 (199)
                      ....++++-++.-|++=|..+..   ..+.++..||.+++..+.+ +.++|+++|.|+++++..+.+....+..   ...
T Consensus       163 ~~e~elv~Lal~iaekvi~~~~~---~~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~l~~---~~~  236 (281)
T PRK06669        163 SSEEEIVELALDIAKKVIKEISE---NSKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISLLDN---EEH  236 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHhcCC---CCC
Confidence            35666777777777766644443   3567889999999999876 6899999999999999887777555432   122


Q ss_pred             CeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081          162 PEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS  198 (199)
Q Consensus       162 ~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~  198 (199)
                      +.|..|.  .|               +.||+++.++.
T Consensus       237 i~I~~D~--~l---------------~~GgcvIet~~  256 (281)
T PRK06669        237 LKIYEDD--AI---------------SKGGCVIETDF  256 (281)
T ss_pred             eEEEECC--CC---------------CCCCeEEEcCC
Confidence            4555553  45               34999998874

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=98.50  E-value=3.2e-05  Score=64.59  Aligned_cols=120  Identities=23%  Similarity=0.332  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029081           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (199)
Q Consensus        14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~   93 (199)
                      ..-|..+|+.+|+.|...|+++++    .++.+....+.+.|.......-       .... ..|-.+...-.+....++
T Consensus        32 a~~IL~~A~~qA~~Il~~Ae~eAe----~l~~~a~e~a~~~~~q~a~~ll-------~~~~-~~~e~l~~~l~~~~~~ll   99 (191)
T PF06188_consen   32 AREILEDARQQAEQILQQAEEEAE----ALLEQAYEQAEAQFWQQANALL-------QEWQ-QQREQLLQQLEEQAEELL   99 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-------HHHH-HHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999    8888777766666654332211       1111 224455666677778888


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHH
Q 029081           94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLES  148 (199)
Q Consensus        94 ~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~  148 (199)
                      ..+-.+|.+-..++.++..++++|..+-   ..+++.+|+|.|.+.+.|...+.+
T Consensus       100 ~~al~~lL~e~~~~qrv~aLlr~l~~~~---~~~~~~tL~~hP~~~~~V~~~L~~  151 (191)
T PF06188_consen  100 SQALERLLDETPDQQRVAALLRQLLASQ---RQESEATLRCHPDQLEEVAAWLAE  151 (191)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHhc---ccccceEEEECHHHHHHHHHHHHh
Confidence            8888888876666778888998887553   577899999999999999877774

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.32  E-value=0.00032  Score=60.32  Aligned_cols=162  Identities=15%  Similarity=0.178  Sum_probs=102.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHH--HH
Q 029081            3 DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASR--IK   80 (199)
Q Consensus         3 d~~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~R--l~   80 (199)
                      +++....+.++...+...+.+.++.|...+++-|+    ..++.....=..+..-+..   +.++  .+.+++...  +.
T Consensus        39 ~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~e~~e----eg~q~G~~eG~~~g~~~~~---~~e~--~~~li~~~~~~~~  109 (234)
T COG1317          39 EEELEQALEAKEEELESAAQELQEGIEEGAREGYE----EGFQLGYEEGFEEGQEEGR---VLER--LAKLIAEFQAELE  109 (234)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHH
Confidence            45677888899999999999999999999999988    4444433322211111000   1111  122222221  11


Q ss_pred             HH--HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCC--ceEEEeccccHHHHHHHHHHHHHHHHHH
Q 029081           81 VL--QAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP--AVLLRCRKDDHHLVESVLESAKEEYAQK  156 (199)
Q Consensus        81 ~L--~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~--~v~V~cr~~D~~lV~~~l~~~~~~y~~~  156 (199)
                      -|  ....++++-++.-|++=|.....   .-+..|..+|.++|..+...  .++|||+|.|+++|+..++...+.+   
T Consensus       110 ~~~~~~e~qLv~lvl~ia~~Vi~~~~~---~~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~~~~---  183 (234)
T COG1317         110 ALKEVVEKQLVQLVLEIARKVIGKELE---LDPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEELSLL---  183 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHh---cCHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHHhhc---
Confidence            11  24556777777777776666543   24588999999999877654  6999999999999999988553332   


Q ss_pred             hCCCCCeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081          157 LQVHPPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS  198 (199)
Q Consensus       157 ~~~~~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~  198 (199)
                       +.. +.|.-|  ..|               .-||+++++|.
T Consensus       184 -~~~-l~l~~D--~~l---------------~~GgC~IeTe~  206 (234)
T COG1317         184 -GWR-LELVAD--PAL---------------SPGGCIIETEF  206 (234)
T ss_pred             -chh-eeeccC--CCC---------------CCCCeEEEecC
Confidence             221 223333  233               35999999985

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=97.81  E-value=0.0092  Score=51.38  Aligned_cols=149  Identities=13%  Similarity=0.162  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~   94 (199)
                      ....++|+.++.+|...|..+.+.++..++.+....+.....+....++.+++-.           .-..|.++.+-.+.
T Consensus        63 e~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a-----------~~~l~~ei~~la~~  131 (246)
T TIGR03321        63 EEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAAL-----------SDELRRRTGAEVFA  131 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            3466789999999999999999999999998888877766666555555443322           22345566666677


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHHHHHHHhc--------------CCCceEEE-eccccHHHHHHHHHHHHHHHHHHhCC
Q 029081           95 AASKEVLNVSRDHNSYKKLLKGLIVQSLLRL--------------KEPAVLLR-CRKDDHHLVESVLESAKEEYAQKLQV  159 (199)
Q Consensus        95 ~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L--------------~e~~v~V~-cr~~D~~lV~~~l~~~~~~y~~~~~~  159 (199)
                      -|.+-|.+.. |+..++.++...|.+ +..+              .+..++|. ..|=+-+....+...+    .+.+|.
T Consensus       132 ~A~kil~~~~-d~~~~~~lid~~i~~-l~~l~~~~~~~l~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l----~~~~~~  205 (246)
T TIGR03321       132 IARKVLTDLA-DTDLEERMVDVFVQR-LRTLDPDEKAALAEALADSGNPVLVRSAFELPEEQREQIRDTI----RETLGP  205 (246)
T ss_pred             HHHHHHHHhc-ChHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHhCCCCceEEEecCCCCHHHHHHHHHHH----HHHHCC
Confidence            7766666644 334565666555531 2111              12224333 5555555555554444    445564


Q ss_pred             CC-CeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081          160 HP-PEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS  198 (199)
Q Consensus       160 ~~-~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~  198 (199)
                      .. ++..+|+                +  .+|||++.-.+
T Consensus       206 ~v~~~~~vdp----------------~--ligGi~l~~g~  227 (246)
T TIGR03321       206 EIRLRFQTEP----------------D--LIGGIELTAGG  227 (246)
T ss_pred             CeeEEeeeCc----------------h--hcCceEEEECC
Confidence            41 2333332                4  89999987654

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []

Probab=97.74  E-value=0.0077  Score=51.03  Aligned_cols=136  Identities=17%  Similarity=0.171  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA   96 (199)
Q Consensus        17 I~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a   96 (199)
                      +...|+..|..|...|...|+.++.+=.+.....=.         .++-+.|...+.-...++..|.  .++.+=+++.+
T Consensus        35 ~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~---------e~~A~llaqa~a~v~r~~a~LE--~~l~~LVl~~V  103 (207)
T PF06635_consen   35 FLAAARREAQRIREWARAAYERERARGYEEGRRAGA---------EQAARLLAQATAEVARYLAGLE--QELAELVLEIV  103 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            456799999999999999999766654433332111         2333445555554445555554  77888888888


Q ss_pred             HHHHHhhccChhHHHHHHHHHHHHHHHhcCCC-ceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeeccccCCCC
Q 029081           97 SKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPP  174 (199)
Q Consensus        97 ~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~-~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~~L~~  174 (199)
                      ++=|..+..+     ++|...+.+++..+..+ .|+||+.|.|++.+...+..+. .   ..|.+  +|.|..+.-|++
T Consensus       104 r~ILg~fd~~-----ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~~-~---~~g~~--~i~I~aDp~La~  171 (207)
T PF06635_consen  104 RKILGEFDPD-----ELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAALE-G---RPGRP--KIRIVADPRLAA  171 (207)
T ss_pred             HHHHhcCChH-----HHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhhh-c---cCCCC--ceeeecCCCCCC
Confidence            8888777654     78889999999988777 8899999999999998887662 2   23554  444443346643

The function of this family is unclear.; GO: 0009877 nodulation

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=97.53  E-value=0.0031  Score=51.40  Aligned_cols=89  Identities=17%  Similarity=0.187  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 029081           11 QQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVS   90 (199)
Q Consensus        11 ~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~   90 (199)
                      ..=...+..+|+.+|.+|...|..+.+.++..++.+.........++.           .+.+-.+.+.-+...|.++++
T Consensus        76 ~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a-----------~~~ie~Ek~~a~~elk~eii~  144 (167)
T PRK08475         76 KEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSF-----------EELMEFEVRKMEREVVEEVLN  144 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence            334456778999999999999999999888888877666555444443           344444456678889999999


Q ss_pred             HHHHHHHHHHHhhccChhHHHHHHH
Q 029081           91 NMMEAASKEVLNVSRDHNSYKKLLK  115 (199)
Q Consensus        91 ~l~~~a~~kL~~l~~~~~~Yk~lL~  115 (199)
                      ++|..   +|.+++.+  .|-.++.
T Consensus       145 ~~~~~---~~~~l~~~--~y~~~~~  164 (167)
T PRK08475        145 ELFES---KKVSLNQQ--EYVNILL  164 (167)
T ss_pred             HHHHh---hhcCCCHH--HHHHHHh
Confidence            99999   88888754  7888765

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=97.38  E-value=0.018  Score=49.50  Aligned_cols=85  Identities=12%  Similarity=0.191  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC--CceEEEeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029081           84 AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE--PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH  160 (199)
Q Consensus        84 ar~~~l~~l~~~a~~kL~~l-~~~~~~Yk~lL~~LI~q~l~~L~e--~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~  160 (199)
                      .++.+|+=++.-|+.=+..- ..+|    ..+..+|.+|+..|..  +.|+|+|+|.|+++|+..+++.         ..
T Consensus       120 ~~~~ll~La~~iA~~vi~~el~~~p----~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e~---------~~  186 (236)
T PRK13386        120 QRDELLDLVEKVTRQVIRCELTLQP----QQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPEK---------VQ  186 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhcc---------cc
Confidence            45566666666666655552 3333    5677999999999965  5899999999999998876541         11


Q ss_pred             CCeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081          161 PPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS  198 (199)
Q Consensus       161 ~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~  198 (199)
                      ..+|..|.  .|.               .||.+|.++.
T Consensus       187 ~~~l~~D~--~l~---------------~GgC~Iet~~  207 (236)
T PRK13386        187 AWGLVADP--SLS---------------AGECRIVTDT  207 (236)
T ss_pred             CeEEEeCC--CcC---------------CCCEEEEeCC
Confidence            14565554  553               4888887763

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=97.28  E-value=0.021  Score=43.22  Aligned_cols=88  Identities=24%  Similarity=0.288  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHh-hccChhHHHHHHHHHHHHHH-Hhc-CCCceEEEeccccHHHHHHHHHHHHHHHHHHhCC
Q 029081           83 QAQDDLVSNMMEAASKEVLN-VSRDHNSYKKLLKGLIVQSL-LRL-KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV  159 (199)
Q Consensus        83 ~ar~~~l~~l~~~a~~kL~~-l~~~~~~Yk~lL~~LI~q~l-~~L-~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~  159 (199)
                      ..+.++++-++.-|++=+.. +..+    ...+.++|.+++ ..+ ..+.++|+|+|.|++.++..++.....      .
T Consensus        24 ~~~~~l~~l~~~iae~vi~~~l~~~----~~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~~------~   93 (128)
T PF02108_consen   24 ELEQELVELALAIAEKVIGRELEED----PEAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELPE------L   93 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHhh------c
Confidence            35666666667666666654 3333    367778999998 433 344799999999999998887733222      1


Q ss_pred             CCCeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081          160 HPPEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS  198 (199)
Q Consensus       160 ~~~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~  198 (199)
                      . ..+..|.  .|+               .||+++.+++
T Consensus        94 ~-~~l~~D~--~l~---------------~G~c~iet~~  114 (128)
T PF02108_consen   94 G-WELVADP--SLA---------------PGDCRIETED  114 (128)
T ss_pred             C-CEEEecC--CCC---------------CCCEEEEECC
Confidence            1 3566664  564               3888887764

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=97.06  E-value=0.078  Score=45.45  Aligned_cols=88  Identities=23%  Similarity=0.214  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcC--CCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCC
Q 029081           84 AQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP  161 (199)
Q Consensus        84 ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~--e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~  161 (199)
                      ....+++-++.-|++=+..-..   .....+..+|.+++..+.  .+.|+|+|+|.|+++|+..+....   . ..|   
T Consensus       133 ie~~Lv~Lal~ia~~vi~~el~---~~~~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~~~~---~-~~~---  202 (246)
T PRK05687        133 IESRLVQLALELARQVIGQELK---TDPSAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLGAEL---S-LHG---  202 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhc---cCHHHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHhhHH---H-hCC---
Confidence            3455666666666655554322   133678889999999875  578999999999999999876221   1 112   


Q ss_pred             CeEeeccccCCCCCCCCCCCCCCCCccccceEEecCC
Q 029081          162 PEIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWEDS  198 (199)
Q Consensus       162 ~~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~~  198 (199)
                      ..|..|.  .|.               .||+++.+++
T Consensus       203 ~~l~~D~--~l~---------------~Ggc~iet~~  222 (246)
T PRK05687        203 WRLLADP--SLH---------------RGGCRISAEE  222 (246)
T ss_pred             eEEEeCC--CcC---------------CCCeEEEeCC
Confidence            4666664  553               4888888764

>PRK06032 fliH flagellar assembly protein H; Validated

Probab=96.21  E-value=0.6  Score=38.98  Aligned_cols=83  Identities=13%  Similarity=0.130  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHhcCC-CceEEEeccccHHHHHHHHHHHHHHHHHHhCCCC
Q 029081           84 AQDDLVSNMMEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHP  161 (199)
Q Consensus        84 ar~~~l~~l~~~a~~kL~~l-~~~~~~Yk~lL~~LI~q~l~~L~e-~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~  161 (199)
                      .++++++=++.-|++=+... ..++   ...+..++.+++..+.+ |.|+|+|+|.|++.|+..+++....    .|.. 
T Consensus        85 ~~~~lv~La~~iarkvi~~~l~~~p---~a~v~~~v~eal~~l~~~~~v~I~v~P~d~~~l~~~l~~~~~~----~~~~-  156 (199)
T PRK06032         85 METEAADLALAVARKIAGAALAAEP---LAEITAAVRDCLRHLVATPHLVVRVNDALVEAARERLERLARE----SGFE-  156 (199)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhcCCCcEEEEECHHHHHHHHHHHHHHHHh----cCcC-
Confidence            34444444455555444443 3322   12577888999888877 4699999999999999888876443    3432 


Q ss_pred             CeEeeccccCCCC
Q 029081          162 PEIIVDHHIYLPP  174 (199)
Q Consensus       162 ~~i~id~~~~L~~  174 (199)
                      ..+.|-.+..|++
T Consensus       157 ~~~~l~~D~~L~~  169 (199)
T PRK06032        157 GRLVVLADPDMAP  169 (199)
T ss_pred             ccEEEeeCCCCCC
Confidence            2444444446654

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=95.39  E-value=0.44  Score=39.45  Aligned_cols=59  Identities=10%  Similarity=0.108  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 029081            7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR   65 (199)
Q Consensus         7 ~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~   65 (199)
                      .++-++=...|..+|+.+|++|...|+++.+..+..+.......+...+++-...+.++
T Consensus        11 ~~ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le   69 (185)
T PRK01194         11 EKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIE   69 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            34444444555555555555555555555555555554444444444444444443333

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=95.30  E-value=1.7  Score=37.61  Aligned_cols=90  Identities=12%  Similarity=0.162  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           17 IRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAA   96 (199)
Q Consensus        17 I~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a   96 (199)
                      -.++|+.++.+|...|..+.+.++.+++.+.+..+.....+....++.+++-.           .-..|.++.+-++.-|
T Consensus        65 ~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a-----------~~~L~~~v~~la~~~A  133 (250)
T PRK14474         65 KQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEF-----------FKALQQQTGQQMVKII  133 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence            35578888888888888888888888888877777766666555555444322           2334566667777777


Q ss_pred             HHHHHhhccChhHHHHHHHHHH
Q 029081           97 SKEVLNVSRDHNSYKKLLKGLI  118 (199)
Q Consensus        97 ~~kL~~l~~~~~~Yk~lL~~LI  118 (199)
                      .+-|.+.. |+.....++..+|
T Consensus       134 ~kiL~~~~-d~~~~~~lid~~i  154 (250)
T PRK14474        134 RAALADLA-NATLEQQIVGIFI  154 (250)
T ss_pred             HHHHHhhc-CHHHHHHHHHHHH
Confidence            77777765 3345666666666

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=94.89  E-value=1.8  Score=35.60  Aligned_cols=97  Identities=16%  Similarity=0.239  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HhHHHHH
Q 029081            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE--------YSMQLNA   76 (199)
Q Consensus         5 ~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~--------~S~~~n~   76 (199)
                      ++..+-+.=..-|..+|+.+|++|...|.++++.+...++......+..+-++....+.++.+..        .+.+.+.
T Consensus        10 ~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~   89 (198)
T PRK03963         10 EINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEA   89 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555666677888889999999999888888888888888877766665555555544443322        2334444


Q ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHH
Q 029081           77 SRIKVLQ----AQDDLVSNMMEAASKEVL  101 (199)
Q Consensus        77 ~Rl~~L~----ar~~~l~~l~~~a~~kL~  101 (199)
                      ++-++.+    .-..+|..++.++...|.
T Consensus        90 a~~~l~~~~~~~Y~~~l~~li~~a~~~l~  118 (198)
T PRK03963         90 VRERLAELPEDEYFETLKALTKEAVEELG  118 (198)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHhC
Confidence            4433332    234567777777766664

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=94.64  E-value=2.1  Score=35.14  Aligned_cols=93  Identities=17%  Similarity=0.200  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~   94 (199)
                      ..+.++|+..|.+|...|..+.+.++..++.+....+......-...++.+++           .-.-..|.++.+-++.
T Consensus        82 e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~-----------~a~~~l~~ei~~lav~  150 (184)
T CHL00019         82 RARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQ-----------RAINQVRQQVFQLALQ  150 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence            44788899999999999999999888888877776666544444444443322           2233445667777777


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHHH
Q 029081           95 AASKEVLNVSRDHNSYKKLLKGLIV  119 (199)
Q Consensus        95 ~a~~kL~~l~~~~~~Yk~lL~~LI~  119 (199)
                      .|.+-|.+.. |++....++...|.
T Consensus       151 ~A~kil~~~l-d~~~~~~lid~~i~  174 (184)
T CHL00019        151 RALGTLNSCL-NNELHLRTINANIG  174 (184)
T ss_pred             HHHHHHHhHc-CHHHHHHHHHHHHH
Confidence            7777777654 44455555555554

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=94.43  E-value=1.4  Score=33.17  Aligned_cols=35  Identities=20%  Similarity=0.213  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKK   50 (199)
Q Consensus        16 fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~k   50 (199)
                      -++++|+.++.+|...|..+.+..+..++.+....
T Consensus        17 ~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~e   51 (103)
T PRK08404         17 ERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEE   51 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555554444444444433

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=94.31  E-value=3  Score=35.97  Aligned_cols=27  Identities=30%  Similarity=0.238  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           12 QMVRFIRQEAEEKANEISVSAEEEFNI   38 (199)
Q Consensus        12 ~Mv~fI~~EA~eKA~EI~~kAeeE~ei   38 (199)
                      +-..-++..|+++|.+|...|+.+++.
T Consensus        40 ~~~~~~l~~Ar~eA~~Ii~~A~~~a~~   66 (255)
T TIGR03825        40 QEFEQILEKAEAEAAQIIEQAEAQAAA   66 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566777777777777777777763

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=94.00  E-value=3.9  Score=38.39  Aligned_cols=104  Identities=14%  Similarity=0.093  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029081           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (199)
Q Consensus        14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~   93 (199)
                      ...+.++|+.++.+|...|.++.+..+..++.+....+.........+++.+++    ..       +-..|.++.+-.+
T Consensus        58 ~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~----~a-------~~elr~ei~~lAv  126 (445)
T PRK13428         58 HTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRA----QL-------TRQLRLELGHESV  126 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-------HHHHHHHHHHHHH
Confidence            445677788888888888888888777777766555555444444444443322    22       2234566667777


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCc
Q 029081           94 EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPA  129 (199)
Q Consensus        94 ~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~  129 (199)
                      ..|.+-|.+-..++...+.++...| +.+..+..+.
T Consensus       127 ~~A~kil~~~l~d~~~~~~lId~~i-~~l~~~~~~~  161 (445)
T PRK13428        127 RQAGELVRNHVADPAQQSATVDRFL-DELDAMAPST  161 (445)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH-HHhhccCCCc
Confidence            7777777653333334455555555 4444555443

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=93.95  E-value=2.8  Score=33.99  Aligned_cols=92  Identities=10%  Similarity=0.145  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~   94 (199)
                      ...+++|+.+|.+|...|..+.+.++..++.+....+..........++.+++-           -.-..|.++.+-+..
T Consensus        77 ~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~-----------a~~~l~~qi~~la~~  145 (174)
T PRK07352         77 QQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQER-----------VIAQLRREAAELAIA  145 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            345778888888888888888888888888776666665444444444433221           223445667777777


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHH
Q 029081           95 AASKEVLNVSRDHNSYKKLLKGLI  118 (199)
Q Consensus        95 ~a~~kL~~l~~~~~~Yk~lL~~LI  118 (199)
                      -|.+-|..-. ++..+..++..+|
T Consensus       146 ~A~kil~~~l-~~~~~~~li~~~i  168 (174)
T PRK07352        146 KAESQLPGRL-DEDAQQRLIDRSI  168 (174)
T ss_pred             HHHHHHHhHc-CHHHHHHHHHHHH
Confidence            7777777654 3334555555544

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=93.26  E-value=4.3  Score=33.87  Aligned_cols=43  Identities=30%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081            6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (199)
Q Consensus         6 v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~   52 (199)
                      +-.+-++=...|..+|+.+|++|..+|+++.+    .|+......+.
T Consensus        16 ~~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe----~i~~kAe~ea~   58 (198)
T PRK01558         16 GLEEAERLANEIILEAKEEAEEIIAKAEEEAK----ELKAKAEKEAN   58 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            34445556677888889999999888888877    66666544444

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=93.16  E-value=4.6  Score=33.96  Aligned_cols=93  Identities=20%  Similarity=0.140  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029081           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (199)
Q Consensus        14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~   93 (199)
                      ....+++|+.+|.+|...|.++.+..+..++.+....+....+....+++.+++-           -.-..|.++.+-..
T Consensus       105 ~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~-----------a~~~Lk~ei~~lAv  173 (205)
T PRK06231        105 AKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRE-----------LKEQLQKESVELAM  173 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            3456678888888888888888887777777665554444333333333322221           12223444445555


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHH
Q 029081           94 EAASKEVLNVSRDHNSYKKLLKGLI  118 (199)
Q Consensus        94 ~~a~~kL~~l~~~~~~Yk~lL~~LI  118 (199)
                      .-|.+-|.+-. |+..++.++...|
T Consensus       174 ~iA~kiL~k~l-d~~~~~~lI~~~i  197 (205)
T PRK06231        174 LAAEELIKKKV-DREDDDKLVDEFI  197 (205)
T ss_pred             HHHHHHHHhhC-CHHHHHHHHHHHH
Confidence            55555554432 3334555555544

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=92.61  E-value=4.5  Score=32.40  Aligned_cols=93  Identities=12%  Similarity=0.134  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029081           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (199)
Q Consensus        14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~   93 (199)
                      ......+|+.+|.+|...|..+.+.++..++.+...++....+....+++.++.-.           .-..|.++.+-.+
T Consensus        65 ~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a-----------~~~L~~~i~~la~  133 (164)
T PRK14473         65 YEAELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRM-----------LSELKSQIADLVT  133 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence            44566788888888888888888877777777766666555444444444333221           1223444555555


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHH
Q 029081           94 EAASKEVLNVSRDHNSYKKLLKGLI  118 (199)
Q Consensus        94 ~~a~~kL~~l~~~~~~Yk~lL~~LI  118 (199)
                      .-|.+-|..-. |++.+..++...|
T Consensus       134 ~~a~kil~~~l-~~~~~~~li~~~i  157 (164)
T PRK14473        134 LTASRVLGAEL-QARGHDALIAESL  157 (164)
T ss_pred             HHHHHHHHhHc-CHHHHHHHHHHHH
Confidence            55555444422 3445555554444

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=91.70  E-value=6.2  Score=32.00  Aligned_cols=92  Identities=22%  Similarity=0.293  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~   94 (199)
                      ...+++|+.+|.+|...|.++.+..+..++.+....+....+....+++.+++    ..++       ..|.++.+-.+.
T Consensus        74 e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~----~a~~-------el~~ei~~lA~~  142 (173)
T PRK13460         74 EARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKG----KALS-------QLQNQIVEMTIT  142 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------HHHHHHHHHHHH
Confidence            45577888888888888888888777777766665555444443333333322    2222       234455555566


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHH
Q 029081           95 AASKEVLNVSRDHNSYKKLLKGLI  118 (199)
Q Consensus        95 ~a~~kL~~l~~~~~~Yk~lL~~LI  118 (199)
                      -|.+-|.+-. |+..+..++...|
T Consensus       143 ~a~kil~~~l-~~~~~~~lid~~i  165 (173)
T PRK13460        143 IASKVLEKQL-KKEDYKAFIETEL  165 (173)
T ss_pred             HHHHHHHHHC-CHHHHHHHHHHHH
Confidence            6655555543 3334555544444

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=91.02  E-value=8.8  Score=32.51  Aligned_cols=57  Identities=21%  Similarity=0.270  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 029081            7 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK   67 (199)
Q Consensus         7 ~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~   67 (199)
                      -.+.++=...|..+|+.+|++|..+|..+.+    +|+.+...++..+..+-...+++..+
T Consensus        22 L~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe----~ii~~A~~eae~ek~r~~s~a~l~~R   78 (207)
T PRK01005         22 LKPAEEEAGAIVHNAKEQAKRIIAEAQEEAE----KIIRSAEETADQKLKQGESALVQAGK   78 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555678889999999999999998877    88888888887777766666665543

>PRK00106 hypothetical protein; Provisional

Probab=90.91  E-value=13  Score=35.92  Aligned_cols=42  Identities=14%  Similarity=0.151  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCh--hHHHHHHHHHHHHH
Q 029081           80 KVLQAQDDLVSNMMEAASKEVLNVSRDH--NSYKKLLKGLIVQS  121 (199)
Q Consensus        80 ~~L~ar~~~l~~l~~~a~~kL~~l~~~~--~~Yk~lL~~LI~q~  121 (199)
                      +-|..+..-++.+..+....|..++.-+  .-...+|..+-.++
T Consensus       139 eeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~~  182 (535)
T PRK00106        139 KHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKL  182 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            4455555555555555655565554332  13444455444443

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=90.41  E-value=7.9  Score=30.95  Aligned_cols=37  Identities=16%  Similarity=-0.006  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           13 MVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKK   49 (199)
Q Consensus        13 Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~   49 (199)
                      -......+|+.++.+|...|.++.+..+..++.+...
T Consensus        64 e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~  100 (164)
T PRK14471         64 DNERLLKEARAERDAILKEAREIKEKMIADAKEEAQV  100 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344566777777777777777777555555544333

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=90.12  E-value=6.2  Score=29.31  Aligned_cols=89  Identities=16%  Similarity=0.252  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE   99 (199)
Q Consensus        20 EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~~k   99 (199)
                      +|+..|.+|..+|.....    .++.+.+.....+...=..+.+        ........+.+.........+..++..+
T Consensus        11 ~AE~eA~~iV~~Ar~~r~----~~lk~Ak~eA~~ei~~~r~~~e--------~~~~~~~~~~~~~~~~~~~~l~~et~~~   78 (105)
T PF03179_consen   11 EAEKEAQEIVEEARKERE----QRLKQAKEEAEKEIEEFRAEAE--------EEFKEKEAEAEGEAEQEAEELEKETEEK   78 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHH-S------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence            456666666666655544    5554444433332211111111        1111112234555666777777777777


Q ss_pred             HHhhccChhHHHHHHHHHHHH
Q 029081          100 VLNVSRDHNSYKKLLKGLIVQ  120 (199)
Q Consensus       100 L~~l~~~~~~Yk~lL~~LI~q  120 (199)
                      +..+..+......-..++|+.
T Consensus        79 i~~i~~~~~~~~~~vv~~ll~   99 (105)
T PF03179_consen   79 IEEIKKSASKNKDKVVDMLLS   99 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHH
Confidence            777754433444444444444

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=89.69  E-value=7.1  Score=29.37  Aligned_cols=71  Identities=15%  Similarity=0.152  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           19 QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAAS   97 (199)
Q Consensus        19 ~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~   97 (199)
                      .+|+.+++++...|..+..    .|+...+..-...|..-..++...    ...++..+|..+=..+...+.++-.++.
T Consensus         9 k~aE~~~e~~L~~A~~Ea~----~Ii~~Ak~~A~k~~~eii~eA~~e----A~~ile~Ak~eie~Ek~~a~~elk~eia   79 (103)
T PRK08404          9 VKAEKEAEERIEKAKEEAK----KIIRKAKEEAKKIEEEIIKKAEEE----AQKLIEKKKKEGEEEAKKILEEGEKEIE   79 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3688888888888888888    888888888888888777776644    5566777777777777777776666553

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=89.47  E-value=10  Score=30.88  Aligned_cols=88  Identities=20%  Similarity=0.227  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHHhHHHHHHHHH
Q 029081            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR--------KKIEYSMQLNASRIK   80 (199)
Q Consensus         9 ~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~--------k~I~~S~~~n~~Rl~   80 (199)
                      +-++=..-|+.+|+..+++|...|+++.+..+..+.............+....+...        ++--...+...++-+
T Consensus        13 ~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~k   92 (188)
T PRK02292         13 EARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVEDE   92 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555555555555555555554444444433333333322222222222        222234444445544


Q ss_pred             HHH----HHHHHHHHHHHHH
Q 029081           81 VLQ----AQDDLVSNMMEAA   96 (199)
Q Consensus        81 ~L~----ar~~~l~~l~~~a   96 (199)
                      +.+    ....+|..++..+
T Consensus        93 L~~~~~~~y~~~l~~li~~~  112 (188)
T PRK02292         93 IASLDGDKREELTKSLLDAA  112 (188)
T ss_pred             HHhcchhhHHHHHHHHHHhc
Confidence            332    2445666666655

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=89.43  E-value=9.5  Score=30.41  Aligned_cols=39  Identities=13%  Similarity=-0.018  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (199)
Q Consensus        14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~   52 (199)
                      ....+++|+.+|.+|...|.++.+.++..++.+....+.
T Consensus        79 ~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~  117 (156)
T CHL00118         79 YEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYID  117 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777777777777777777666555555444433

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=89.19  E-value=12  Score=31.34  Aligned_cols=154  Identities=15%  Similarity=0.167  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           20 EAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKE   99 (199)
Q Consensus        20 EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~~k   99 (199)
                      +++...+.|...|+++.+    .|.........    +-..++.-..+-..-......+-+.-..+..++..+.-+++..
T Consensus         3 ~~e~~i~~I~~~a~eeak----~I~~eA~~eae----~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~   74 (194)
T COG1390           3 ELEKLIKKILREAEEEAE----EILEEAREEAE----KIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRK   74 (194)
T ss_pred             cHHHHHHHHHHHHHHHHH----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888999999998888    77755333322    2222222222223445555566677778888888877777777


Q ss_pred             HHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeecccc-CC-C----
Q 029081          100 VLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI-YL-P----  173 (199)
Q Consensus       100 L~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id~~~-~L-~----  173 (199)
                      +..      .++.+|.+.+...-..|     .-.-.+.+...+..++.++...|   .|.+ +.|.+++.. .+ +    
T Consensus        75 ~Le------~~ee~l~~~~~~~~e~L-----~~i~~~~~~~~l~~ll~~~~~~~---~~~~-~iV~~~e~d~~~v~~~~~  139 (194)
T COG1390          75 LLE------AKEEILESVFEAVEEKL-----RNIASDPEYESLQELLIEALEKL---LGGE-LVVYLNEKDKALVEQILR  139 (194)
T ss_pred             HHH------HHHHHHHHHHHHHHHHH-----HcCcCCcchHHHHHHHHHHHHhc---CCCC-eEEEeCcccHHHHHHHHh
Confidence            755      46677777444333333     22334456666777777776654   3333 345544211 11 0    


Q ss_pred             -CCCCCCCCCCCCCccccceEEecCC
Q 029081          174 -PGPGHHNAHGPSWRCRGGFSRWEDS  198 (199)
Q Consensus       174 -~~~~~~~~~~~~~~~~GGvvl~~~~  198 (199)
                       .........+.+  |.|||++++..
T Consensus       140 ~~~~~~~~~~~~d--~~GGvvv~~~d  163 (194)
T COG1390         140 ELKIGVELGEGID--IIGGVVVESRD  163 (194)
T ss_pred             hcccchhccccCC--CcceEEEEeCC
Confidence             001111222225  99999998753

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=89.16  E-value=11  Score=30.62  Aligned_cols=39  Identities=15%  Similarity=0.222  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ   53 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~   53 (199)
                      .....+|+.+|.+|...|.++.+..+..++.+....+..
T Consensus        76 e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~  114 (175)
T PRK14472         76 RELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKK  114 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567777777777777777776666666555554443

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=89.15  E-value=11  Score=30.79  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           18 RQEAEEKANEISVSAEEEFNIEKLQLV   44 (199)
Q Consensus        18 ~~EA~eKA~EI~~kAeeE~eiEK~~iv   44 (199)
                      +++|+.++.+|...|.++.+.+...+.
T Consensus        88 L~~A~~ea~~Ii~~A~~~a~~~~e~~~  114 (184)
T PRK13455         88 QREVQEQADRIVAAAKDEAQAAAEQAK  114 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555555555555553333333

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=89.12  E-value=6.6  Score=28.22  Aligned_cols=24  Identities=0%  Similarity=0.032  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           72 MQLNASRIKVLQAQDDLVSNMMEA   95 (199)
Q Consensus        72 ~~~n~~Rl~~L~ar~~~l~~l~~~   95 (199)
                      .++..+|..+-..+..++..+..+
T Consensus        50 ~ii~~Ak~ei~~e~~~a~~e~k~e   73 (85)
T TIGR02926        50 EIIKEAEEEIEKEAEKIREEGEKE   73 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555444444433

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=88.79  E-value=10  Score=29.85  Aligned_cols=93  Identities=15%  Similarity=0.082  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 029081           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMM   93 (199)
Q Consensus        14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~   93 (199)
                      ....+.+|+.++.+|...|..+.+.++..++.+....+....+.....++.+++           .-.-..+.++.+-..
T Consensus        61 ~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~-----------~a~~~l~~~~~~lA~  129 (156)
T PRK05759         61 YEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERK-----------RAREELRKQVADLAV  129 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence            445667788888888888888888777777766555555444333333332221           122334455556666


Q ss_pred             HHHHHHHHhhccChhHHHHHHHHHH
Q 029081           94 EAASKEVLNVSRDHNSYKKLLKGLI  118 (199)
Q Consensus        94 ~~a~~kL~~l~~~~~~Yk~lL~~LI  118 (199)
                      .-|.+-|.+.. |+.....++...|
T Consensus       130 ~~a~k~l~~~~-d~~~~~~~i~~~i  153 (156)
T PRK05759        130 AGAEKILGREL-DAAAQSDLIDKLI  153 (156)
T ss_pred             HHHHHHHHhHc-CHHHHHHHHHHHH
Confidence            66655555543 3334555555544

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=87.67  E-value=11  Score=29.08  Aligned_cols=63  Identities=11%  Similarity=0.117  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~   94 (199)
                      ...+.+|+.+|.+|...|..+.+.++..++.+....                   ....+..+|..+...+...+..+..
T Consensus        63 e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~e-------------------a~~~~~~a~~~i~~e~~~a~~~l~~  123 (140)
T PRK07353         63 EQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAE-------------------AQASKEKARREIEQQKQAALAQLEQ  123 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666666666666666665555555444433                   3344445555566666666555555


Q ss_pred             HH
Q 029081           95 AA   96 (199)
Q Consensus        95 ~a   96 (199)
                      .+
T Consensus       124 ~v  125 (140)
T PRK07353        124 QV  125 (140)
T ss_pred             HH
Confidence            44

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=87.59  E-value=13  Score=29.89  Aligned_cols=10  Identities=30%  Similarity=0.335  Sum_probs=4.6

Q ss_pred             HHHHHHHHHH
Q 029081           28 ISVSAEEEFN   37 (199)
Q Consensus        28 I~~kAeeE~e   37 (199)
                      |...|+++.+
T Consensus         2 I~~eA~~ka~   11 (198)
T PF01991_consen    2 IEEEAQEKAE   11 (198)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            4444444444

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=87.07  E-value=14  Score=29.43  Aligned_cols=93  Identities=15%  Similarity=0.149  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~   94 (199)
                      .....+|+.+|.+|...|..+.+..+..++.+....+....+.....++.++.           .-.-..|.++.+-.+.
T Consensus        63 ~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~-----------~a~~~l~~ei~~lA~~  131 (159)
T PRK13461         63 ERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKE-----------KAEYEIKNQAVDLAVL  131 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence            45667788888888888888888777777776666555444443333332221           1122334444455555


Q ss_pred             HHHHHHHhhccChhHHHHHHHHHHH
Q 029081           95 AASKEVLNVSRDHNSYKKLLKGLIV  119 (199)
Q Consensus        95 ~a~~kL~~l~~~~~~Yk~lL~~LI~  119 (199)
                      -|.+-|.... |+..+..++...|.
T Consensus       132 ~a~kil~~~~-~~~~~~~li~~~i~  155 (159)
T PRK13461        132 LSSKALEESI-DESEHRRLIKDFIS  155 (159)
T ss_pred             HHHHHHHhHc-CHHHHHHHHHHHHh
Confidence            5555555433 33345555555443

>PRK15354 type III secretion system protein SsaK; Provisional

Probab=86.92  E-value=19  Score=30.92  Aligned_cols=120  Identities=16%  Similarity=0.171  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~   94 (199)
                      .-|...|..||.+|...|..+-.    .+..+.....+.-...-..+.|.+        ..+.-.+-|-+-+++...+..
T Consensus        44 ~~il~~A~rkA~~I~q~A~~~~~----~ll~qaqqqad~L~~~~~~~~E~~--------~L~qHV~wLve~e~lE~sLV~  111 (224)
T PRK15354         44 HAIVSSAYRKAEKIIRDAYRYQR----EQKVEQQQELACLRKNTLEKMEVE--------WLEQHVKHLQEDENQFRSLVD  111 (224)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhHHHHHHHHH
Confidence            46899999999999988887655    444443222221111111111111        111122333334444444444


Q ss_pred             HHHHHHHhh--------ccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHH
Q 029081           95 AASKEVLNV--------SRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL  146 (199)
Q Consensus        95 ~a~~kL~~l--------~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l  146 (199)
                      .++.++..-        .....--.-+...|=.|....-.++.+++++-|++.+.+...+
T Consensus       112 ~~~~~I~~aI~~VltaW~gQQ~isq~Li~RLa~Qv~~mA~eg~LtL~VHP~~~~am~~af  171 (224)
T PRK15354        112 HAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIHPEKEALMRETF  171 (224)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhcCceEEEECHHHHHHHHHHH
Confidence            444443331        2222234567777888999999999999999999998884433

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=86.88  E-value=12  Score=28.71  Aligned_cols=39  Identities=31%  Similarity=0.344  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ   53 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~   53 (199)
                      .-|..+|+++|.+|..+|+.+....+..++......+..
T Consensus        31 ~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~   69 (108)
T COG2811          31 EQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEE   69 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666666666666666666555544444

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=86.38  E-value=10  Score=27.25  Aligned_cols=38  Identities=26%  Similarity=0.267  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           16 FIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ   53 (199)
Q Consensus        16 fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~   53 (199)
                      .|..+|...|+.|...+..+...+..+|+.+.+..|..
T Consensus        24 ~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~   61 (85)
T TIGR02926        24 QRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEK   61 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444555444444443

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=85.97  E-value=14  Score=28.68  Aligned_cols=39  Identities=18%  Similarity=0.141  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           14 VRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (199)
Q Consensus        14 v~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~   52 (199)
                      ....+++|+..|.+|...|..+.+..+..++.+....+.
T Consensus        52 ~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~   90 (147)
T TIGR01144        52 AQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREERE   90 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777777777777777666666655444433

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=85.68  E-value=20  Score=30.12  Aligned_cols=22  Identities=27%  Similarity=0.205  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 029081           16 FIRQEAEEKANEISVSAEEEFN   37 (199)
Q Consensus        16 fI~~EA~eKA~EI~~kAeeE~e   37 (199)
                      ..+.+|+.+|.+|...|.++.+
T Consensus       112 ~~L~~Ar~eA~~Ii~~Ar~ea~  133 (204)
T PRK09174        112 QELAQARAKAHSIAQAAREAAK  133 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555554444444

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=85.32  E-value=11  Score=28.41  Aligned_cols=63  Identities=21%  Similarity=0.228  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMME   94 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~   94 (199)
                      .....+|+..+.+|...|.++.+..+..++.+....+.                   ..+..++-.+-..++.++.++..
T Consensus        57 ~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~-------------------~~~~~a~~~i~~e~~~a~~~l~~  117 (132)
T PF00430_consen   57 EEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAE-------------------RIIEQAEAEIEQEKEKAKKELRQ  117 (132)
T ss_dssp             HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555555444444443333322                   33444454555555555555544


Q ss_pred             HH
Q 029081           95 AA   96 (199)
Q Consensus        95 ~a   96 (199)
                      .+
T Consensus       118 ~~  119 (132)
T PF00430_consen  118 EI  119 (132)
T ss_dssp             --
T ss_pred             HH
Confidence            43

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>PRK12704 phosphodiesterase; Provisional

Probab=85.24  E-value=37  Score=32.66  Aligned_cols=25  Identities=16%  Similarity=0.377  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Q 029081           80 KVLQAQDDLVSNMMEAASKEVLNVS  104 (199)
Q Consensus        80 ~~L~ar~~~l~~l~~~a~~kL~~l~  104 (199)
                      +-|..+..-++.+..+....|..++
T Consensus       124 ~eLe~~~~~~~~~~~~~~~~l~~~a  148 (520)
T PRK12704        124 QELEKKEEELEELIEEQLQELERIS  148 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444555555555555555565553

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=85.10  E-value=18  Score=29.08  Aligned_cols=28  Identities=21%  Similarity=0.211  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           17 IRQEAEEKANEISVSAEEEFNIEKLQLV   44 (199)
Q Consensus        17 I~~EA~eKA~EI~~kAeeE~eiEK~~iv   44 (199)
                      .+..|+.+|.+|...|.++.+.+...+.
T Consensus        70 ~L~~A~~ea~~Ii~~A~~~a~~~~~~~~   97 (167)
T PRK14475         70 EREEAERQAAAMLAAAKADARRMEAEAK   97 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666666666664444444

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=84.53  E-value=39  Score=32.41  Aligned_cols=11  Identities=27%  Similarity=0.613  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHH
Q 029081          143 ESVLESAKEEY  153 (199)
Q Consensus       143 ~~~l~~~~~~y  153 (199)
                      +.+|..|.+.|
T Consensus       185 ~~i~~~aiqr~  195 (514)
T TIGR03319       185 KEILATAIQRY  195 (514)
T ss_pred             HHHHHHHHHhc
Confidence            44555555554

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=83.62  E-value=23  Score=29.04  Aligned_cols=30  Identities=17%  Similarity=0.121  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLV   44 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv   44 (199)
                      ..++.+|+.++.+|...|.++.+.++..++
T Consensus        89 e~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~  118 (181)
T PRK13454         89 NKALADARAEAQRIVAETRAEIQAELDVAI  118 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555555554433333

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=83.17  E-value=21  Score=28.29  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 029081           72 MQLNASRIKVLQAQDDLVSNMME   94 (199)
Q Consensus        72 ~~~n~~Rl~~L~ar~~~l~~l~~   94 (199)
                      ...+.++..+-..|...+.++..
T Consensus        98 ~~~~~a~~~I~~ek~~a~~el~~  120 (159)
T PRK09173         98 RRNKLAEQKIAQAETDAINAVRS  120 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555544444444433

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=82.14  E-value=25  Score=28.41  Aligned_cols=53  Identities=9%  Similarity=0.073  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           42 QLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASK   98 (199)
Q Consensus        42 ~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~l~~l~~~a~~   98 (199)
                      .|+.+.+.......+....++.-+    ....+..++..+-..|+..+..+..++-.
T Consensus        86 ~ii~~A~~ea~~~~~~~~~~A~~e----a~~~~~~a~~~ie~e~~~a~~el~~ei~~  138 (173)
T PRK13460         86 AIVAEAKSDALKLKNKLLEETNNE----VKAQKDQAVKEIELAKGKALSQLQNQIVE  138 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555554444444443322    44455555555666666555555554433

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=80.90  E-value=28  Score=28.19  Aligned_cols=39  Identities=13%  Similarity=0.170  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ   53 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~   53 (199)
                      ...+.+|+.+|.+|...|..+.+.++..++.+.......
T Consensus        76 e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~  114 (173)
T PRK13453         76 KQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANG  114 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566777777777777777776666666555544443

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=80.60  E-value=28  Score=28.00  Aligned_cols=57  Identities=30%  Similarity=0.298  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLN   75 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n   75 (199)
                      .--+.+|+.+|.+|...|..+..    .+.+..+.+...+.++...+++.+-..++...+.
T Consensus        64 ~~~l~~Ar~~a~~Ii~~A~~~a~----~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~  120 (161)
T COG0711          64 EQELEEAREQASEIIEQAKKEAE----QIAEEIKAEAEEELERIKEAAEAEIEAEKERALE  120 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456777888888888888887    4444444555555555555544443333333333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	199
4dl0_J	233	Crystal Structure Of The Heterotrimeric Egchead Per		2e-20
2kz9_A	69	Structure Of E1-69 Of Yeast V-Atpase Length = 69		2e-04

>pdb|4DL0|J Chain J, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 233

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 99/167 (59%)
Query: 6   VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR 65
           V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+  + 
Sbjct: 13  VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLS 72
Query: 66  KKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRL 125
           ++I  S   N  R+KVL A++  +  + E   +++  ++ + + YK +L+ LIV++LL+L
Sbjct: 73  QQITKSTIANKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKL 132
Query: 126 KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL 172
            EP  +++  + D  L+ES+ +    EY +K Q  P E IV  + YL
Sbjct: 133 LEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDYL 179

>pdb|2KZ9|A Chain A, Structure Of E1-69 Of Yeast V-Atpase Length = 69

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 36/57 (63%)
Query: 6  VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62
          V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K+ 
Sbjct: 13 VNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKA 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	4e-34
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	3e-24
2kz9_A	69	V-type proton ATPase subunit E; V-ATPase, proton t	4e-24
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-04
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	2e-04

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A Length = 198

 Score =  119 bits (299), Expect = 4e-34
 Identities = 32/156 (20%), Positives = 66/156 (42%), Gaps = 2/156 (1%)

Query: 9   QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKI 68
             + +++ I +EAE K   I   A ++    K +     + K      R + Q E+ K+ 
Sbjct: 3   GAELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQR 62

Query: 69  EYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEP 128
             +      R K L  Q++++S+++E   + +  +S D   Y + +K L+ +++  L E 
Sbjct: 63  IIANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSED--EYFESVKALLKEAIKELNEK 120

Query: 129 AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEI 164
            V +   +    L+ S +E  K E           +
Sbjct: 121 KVRVMSNEKTLGLIASRIEEIKSELGDVSIELGETV 156

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J Length = 187

 Score = 93.4 bits (232), Expect = 3e-24
 Identities = 24/157 (15%), Positives = 69/157 (43%), Gaps = 13/157 (8%)

Query: 3   DADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQV 62
           +A +S++++  ++ + QEAE KA  +   AEE+       L++A ++ +  +Y    ++ 
Sbjct: 4   EAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAK----ALLQARERALEAQYRAALRRA 59

Query: 63  EIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSL 122
           E   ++              QA+ +++  +     + +  + +    + ++++ L +++L
Sbjct: 60  ESAGELL-------VATARTQARGEVLEEVRRRVREALEALPQKPE-WPEVVRKLALEAL 111

Query: 123 LRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV 159
             L     L+    +D   +E++      E   +  +
Sbjct: 112 EALPGAKALV-ANPEDLPHLEALARERGVELQAEPAL 147

>2kz9_A V-type proton ATPase subunit E; V-ATPase, proton transport; NMR {Saccharomyces cerevisiae} Length = 69

 Score = 89.5 bits (222), Expect = 4e-24
 Identities = 23/61 (37%), Positives = 37/61 (60%)

Query: 1  MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
          +    V+ ++ +M  FIR+EAEEKA EI + A++E+ IEK  +V  E   I   ++ K K
Sbjct: 8  LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLK 67

Query: 61 Q 61
          +
Sbjct: 68 K 68

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 8   KQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKK 67
            ++ Q    IR+  EE+   +         + + +  E  KK + +  +R+ +QVE  K 
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAAS-KVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 136

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii} Length = 106

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 106 DHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVE-SVLESAKEEYAQKL 157
           +   YK  L  LI    + L    +++R  K D  L++ S L + ++E     
Sbjct: 1   EQPEYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENAT 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	100.0
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	99.89
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	99.87
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	99.57
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	95.76
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	95.12
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	91.9
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	84.94
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	81.92

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=100.00  E-value=3.3e-46  Score=316.01  Aligned_cols=185  Identities=31%  Similarity=0.537  Sum_probs=174.2

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Q 029081            1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIK   80 (199)
Q Consensus         1 m~d~~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~   80 (199)
                      |||+||++||++|++||++||++||+||..+|++||+++|.+++++++.+|+.+|++++++++++++|+.|++.|++|++
T Consensus         8 l~~~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~   87 (233)
T 4efa_E            8 LTPNQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLK   87 (233)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCC
Q 029081           81 VLQAQDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVH  160 (199)
Q Consensus        81 ~L~ar~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~  160 (199)
                      +|.+|+++|+++|+.|+++|..++.|+..|+.+|.+||.||++.|++|+|+|+||+.|.++|+++++++..+|+..+|..
T Consensus        88 vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~  167 (233)
T 4efa_E           88 VLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRA  167 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999989999999999999999999999999999999999999999999999999976


Q ss_pred             CC-eEeeccccCCCCCCCCCCCCCCCCccccceEEecC
Q 029081          161 PP-EIIVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWED  197 (199)
Q Consensus       161 ~~-~i~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~  197 (199)
                      ++ .+.++ ..|||++         +  |+|||+|++.
T Consensus       168 ~~~~~~~~-~~~l~~~---------~--~~GGvil~s~  193 (233)
T 4efa_E          168 PLEEIVIS-NDYLNKD---------L--VSGGVVVSNA  193 (233)
T ss_dssp             CCCEEEEC-SSCCCTT---------T--CSSEEEEECT
T ss_pred             Cccccccc-cccCCcc---------c--ccCceEEEEC
Confidence            43 34444 4677652         5  9999999864

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=99.89  E-value=3.4e-21  Score=157.52  Aligned_cols=131  Identities=13%  Similarity=0.205  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHhHHHHHHHHHHHHHHHH
Q 029081           12 QMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIR----KKIEYSMQLNASRIKVLQAQDD   87 (199)
Q Consensus        12 ~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~----k~I~~S~~~n~~Rl~~L~ar~~   87 (199)
                      ++.+.|..||+.+|++|...|+++.+    .|+.+.+.+....+....+.++.+    .....|+..+++|+++|.+|++
T Consensus         2 ~~~~~l~~eA~~~a~~I~~eA~~~a~----~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~e   77 (187)
T 3v6i_A            2 KLEAILSQEVEAEIQALLQEAEAKAE----AVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGE   77 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888899999999888888888    888887777766666655554433    4566899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHH
Q 029081           88 LVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLES  148 (199)
Q Consensus        88 ~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~  148 (199)
                      +++++|+.|+++|.+++.+ ..|+.+|.+||.+|+..|++|.++| |||.|.++|+.++++
T Consensus        78 li~~v~~~a~~~L~~~~~~-~~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~  136 (187)
T 3v6i_A           78 VLEEVRRRVREALEALPQK-PEWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARE  136 (187)
T ss_dssp             HHHHHHHHHHHHHHHGGGS-TTHHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHh
Confidence            9999999999999999987 4799999999999999999999977 999999999988874

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=99.87  E-value=2.4e-22  Score=162.90  Aligned_cols=158  Identities=20%  Similarity=0.301  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHH
Q 029081            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQA   84 (199)
Q Consensus         5 ~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~a   84 (199)
                      ++..+-+.|.+||.++|+++|++|..+|+++|+.++.+++++...           +++..+++..|++.++.|+.++.+
T Consensus        10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~-----------e~~~~~~~~~s~~~~~~r~~~l~~   78 (198)
T 2dm9_A           10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKT-----------QAELEKQRIIANARLEVRRKRLAI   78 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678899999999999999999999999999999999987744           455667778999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeE
Q 029081           85 QDDLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEI  164 (199)
Q Consensus        85 r~~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i  164 (199)
                      |+++++.+|..|.+.|..++  +..|+.+|.+||.+++..++++.++|+|+|.|.++|+.+++.+...|.   +   +.+
T Consensus        79 ~~ev~~~~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~---~---~~l  150 (198)
T 2dm9_A           79 QEEIISSVLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG---D---VSI  150 (198)
T ss_dssp             --CHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT---T---CEE
T ss_pred             HHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc---C---ceE
Confidence            99999999999999999975  458999999999999999999999999999999999999999888875   2   477


Q ss_pred             eeccccCCCCCCCCCCCCCCCCccccceEEecC
Q 029081          165 IVDHHIYLPPGPGHHNAHGPSWRCRGGFSRWED  197 (199)
Q Consensus       165 ~id~~~~L~~~~~~~~~~~~~~~~~GGvvl~~~  197 (199)
                      +|+.    |+          .  |.||+++.++
T Consensus       151 ~i~~----~~----------~--~~GG~~i~~~  167 (198)
T 2dm9_A          151 ELGE----TV----------D--TMGGVIVETE  167 (198)
T ss_dssp             EECC----CC----------C--CSSEEEEEET
T ss_pred             EECC----CC----------C--ccCceEEEeC
Confidence            7753    22          4  8899999875

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}

Probab=99.57  E-value=6.9e-17  Score=121.80  Aligned_cols=73  Identities=21%  Similarity=0.238  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHH-HHHHHHHHHHHhCCCCCeEeeccccCCCCCCCCCCCCCCCC
Q 029081          108 NSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSW  186 (199)
Q Consensus       108 ~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~-l~~~~~~y~~~~~~~~~~i~id~~~~L~~~~~~~~~~~~~~  186 (199)
                      ..|+++|++||.||++.|++|+|+|+||++|.++|+++ ++++.++|++++|.+ ++|+++.    |.          + 
T Consensus         3 ~~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~~-~~v~~~~----~~----------~-   66 (106)
T 3lg8_A            3 PEYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKKV-TVLKKGE----PV----------D-   66 (106)
T ss_dssp             CSTTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSSC-CCCCCCC----CC----------S-
T ss_pred             cHHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCCe-EEEEeCC----Cc----------c-
Confidence            37999999999999999999999999999999999999 999999999999987 6777653    22          5 


Q ss_pred             ccccceEEecC
Q 029081          187 RCRGGFSRWED  197 (199)
Q Consensus       187 ~~~GGvvl~~~  197 (199)
                       |+|||++.+.
T Consensus        67 -~~GGvil~s~   76 (106)
T 3lg8_A           67 -IAGGCIIETA   76 (106)
T ss_dssp             -SSCBCBCSSC
T ss_pred             -ccccEEEEeC
Confidence             9999999873

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=95.76  E-value=0.04  Score=35.78  Aligned_cols=39  Identities=26%  Similarity=0.363  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           10 IQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIR   52 (199)
Q Consensus        10 i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~   52 (199)
                      |..+++-|..+|+.+|+.|...|+.+.+    .|+.+...+..
T Consensus         8 le~i~~kI~~eA~~eA~~Il~eA~~eA~----~Ii~eA~~~Ae   46 (52)
T 2kk7_A            8 VDKIKSKILDDAKAEANKIISEAEAEKA----KILEKAKEEAE   46 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            7889999999999999999999999998    88877766554

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=95.12  E-value=0.89  Score=36.02  Aligned_cols=96  Identities=19%  Similarity=0.148  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HhHHHHHH
Q 029081            6 VSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIE--------YSMQLNAS   77 (199)
Q Consensus         6 v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~--------~S~~~n~~   77 (199)
                      +..+-+.-.+-|..+|+.+|++|...|+++.+..+..+.......+...+++....+.++.+..        .+.+.+.+
T Consensus         7 l~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a   86 (187)
T 3v6i_A            7 LSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRV   86 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556677899999999999999999999988888888877777777777777666664422        22333444


Q ss_pred             HHHHHH-----HHHHHHHHHHHHHHHHHH
Q 029081           78 RIKVLQ-----AQDDLVSNMMEAASKEVL  101 (199)
Q Consensus        78 Rl~~L~-----ar~~~l~~l~~~a~~kL~  101 (199)
                      |-++.+     ...++|..++.++...|.
T Consensus        87 ~~~L~~~~~~~~Y~~~L~~Li~ea~~~l~  115 (187)
T 3v6i_A           87 REALEALPQKPEWPEVVRKLALEALEALP  115 (187)
T ss_dssp             HHHHHHGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHhhhCCccHHHHHHHHHHHHHHHcC
Confidence            433222     245778888887776653

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=91.90  E-value=0.047  Score=43.00  Aligned_cols=125  Identities=14%  Similarity=0.244  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 029081            9 QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVEIRKKIEYSMQLNASRIKVLQAQDDL   88 (199)
Q Consensus         9 ~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~~e~~k~I~~S~~~n~~Rl~~L~ar~~~   88 (199)
                      -+.+++..|..+|+.++++|...|.++.+    .|+.+...+...++.+-..+.               +.+.-..+...
T Consensus         3 ~le~l~~~il~~A~~~a~~il~eA~~~a~----~i~~~a~~e~~~~~~~~~~~a---------------~~e~~~~~~~~   63 (198)
T 2dm9_A            3 GAELIIQEINKEAERKIEYILNEARQQAE----KIKEEARRNAEAKAEWIIRRA---------------KTQAELEKQRI   63 (198)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Confidence            36789999999999999999999999999    888776665554443333332               22233334444


Q ss_pred             HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEeec
Q 029081           89 VSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVD  167 (199)
Q Consensus        89 l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~id  167 (199)
                      +..+..+++..+...-      ..++..++..+...|..  +   +.+...+++..++.++...+    +...+.|.++
T Consensus        64 ~s~~~~~~r~~~l~~~------~ev~~~~~~~a~~~l~~--l---~~~~y~~~l~~li~e~~~~~----~~~~v~i~v~  127 (198)
T 2dm9_A           64 IANARLEVRRKRLAIQ------EEIISSVLEEVKRRLET--M---SEDEYFESVKALLKEAIKEL----NEKKVRVMSN  127 (198)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHH--C---CHHHHHHHHHHHHHHHHHHH----TCSEEEEECC
T ss_pred             HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHh--c---CHHHHHHHHHHHHHHHHHHc----CCCCEEEEEC
Confidence            5555555555554432      23333344333333322  1   23334677777777776554    3322455554

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=84.94  E-value=5.8  Score=25.51  Aligned_cols=20  Identities=20%  Similarity=0.162  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 029081           18 RQEAEEKANEISVSAEEEFN   37 (199)
Q Consensus        18 ~~EA~eKA~EI~~kAeeE~e   37 (199)
                      +.+|+.++.+|...|....+
T Consensus         4 L~~Ar~ea~~Ii~~A~~~a~   23 (61)
T 1l2p_A            4 LKKAKAEAQVIIEQANKRRS   23 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=81.92  E-value=1.4  Score=28.32  Aligned_cols=35  Identities=23%  Similarity=0.187  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081            5 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIE   39 (199)
Q Consensus         5 ~v~~~i~~Mv~fI~~EA~eKA~EI~~kAeeE~eiE   39 (199)
                      ++..+-++=...|..+|+.+|++|...|+.+.+..
T Consensus        14 kI~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~~   48 (52)
T 2kk7_A           14 KILDDAKAEANKIISEAEAEKAKILEKAKEEAEKR   48 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566677899999999999999999887743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d2dm9a1	118	d.81.4.1 (A:81-198) V-type ATP synthase subunit E	1e-12

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 59.8 bits (145), Expect = 1e-12
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 87  DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVL 146
           +++S+++E   + +  +S D   Y + +K L+ +++  L E  V +   +    L+ S +
Sbjct: 1   EIISSVLEEVKRRLETMSEDE--YFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRI 58

Query: 147 ESAKEEYAQK 156
           E  K E    
Sbjct: 59  EEIKSELGDV 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d2dm9a1	118	V-type ATP synthase subunit E {Pyrococcus horikosh	99.57
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	89.62
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	89.31

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=2.2e-15  Score=112.82  Aligned_cols=86  Identities=21%  Similarity=0.319  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHHHHHHHHHHHhCCCCCeEee
Q 029081           87 DLVSNMMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIV  166 (199)
Q Consensus        87 ~~l~~l~~~a~~kL~~l~~~~~~Yk~lL~~LI~q~l~~L~e~~v~V~cr~~D~~lV~~~l~~~~~~y~~~~~~~~~~i~i  166 (199)
                      ++|+++|++|.++|.+++.+  .|+++|++||.||+..|++++++|+|+++|.++|+++++++..+|+     . +.+++
T Consensus         1 E~i~~v~~~a~~~l~~~~~~--~Y~~~L~~Li~~a~~~l~~~ev~v~~~~~D~~~v~~~~~~~~~~~~-----~-~~~~~   72 (118)
T d2dm9a1           1 EIISSVLEEVKRRLETMSED--EYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG-----D-VSIEL   72 (118)
T ss_dssp             CHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT-----T-CEEEE
T ss_pred             CHHHHHHHHHHHHHHccChh--HHHHHHHHHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHHcC-----C-ceeEe
Confidence            47999999999999999764  7999999999999999999999999999999999999998877763     2 46666


Q ss_pred             ccccCCCCCCCCCCCCCCCCccccceEEec
Q 029081          167 DHHIYLPPGPGHHNAHGPSWRCRGGFSRWE  196 (199)
Q Consensus       167 d~~~~L~~~~~~~~~~~~~~~~~GGvvl~~  196 (199)
                      +.    |.          +  |.|||+|.+
T Consensus        73 ~~----~~----------~--~~GGvil~s   86 (118)
T d2dm9a1          73 GE----TV----------D--TMGGVIVET   86 (118)
T ss_dssp             CC----CC----------C--CSSEEEEEE
T ss_pred             CC----CC----------c--cCCCEEEEe
Confidence            53    11          5  999999987

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=89.62  E-value=1.2  Score=28.11  Aligned_cols=39  Identities=21%  Similarity=0.325  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029081           15 RFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQ   53 (199)
Q Consensus        15 ~fI~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~   53 (199)
                      +-|..+|+..+.+|...|......|..+|+.+....|..
T Consensus        12 a~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~   50 (61)
T d1l2pa_          12 QVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEA   50 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555554444

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=89.31  E-value=1.6  Score=27.48  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029081           18 RQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ   61 (199)
Q Consensus        18 ~~EA~eKA~EI~~kAeeE~eiEK~~iv~~ek~kI~~~~~kk~k~   61 (199)
                      +.+|+.+|.+|...|....+    .||...+.+-..+.++-..+
T Consensus         4 L~eAK~eAa~Ii~qA~~ra~----qIveeak~~A~~Ea~rI~~~   43 (61)
T d1l2pa_           4 LKKAKAEAQVIIEQANKRRS----QILDEAKAEAEQERTKIVAQ   43 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999998888    99999888777666554443