Citrus Sinensis ID: 029085

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG
cccccccccccEEEEEcHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHcHHcHHHHHHHHcccccccEEEEccccHHHHHcHHHHHHHHHHHHcccEEEcccccccccccccccccccHHHHHHHHHHHHHccccccccccc
cccHHHHcccEEEEEEcccHHHHHHHHHHHHHHcccEEEEEEcccHHHHccHHHcccccEEEcccHHHHHccccccccHHHHHHHHccEEEEEEEcHHHHHHHHccccccHHHHHHHcccccccEEEEEcccHHHHHcHHHHHHHHHHHHHccEEcccEccccccccccccEcccHHHHHHHHHHHHHHcccccccccc
mqvntglrkprILLAAsgsvaaikfgnlCHCFSEWAEVRAVATKSSlhfidraalpkdvifytdedewatwnkigdSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAwdynkplfvapamntfmwnnpfterhLMSIDElgislippvskrlacgdygngamaepsLIYSTVRLFAEsrnqsgdgkvg
mqvntglrkprilLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSlhfidraalpkdVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAEsrnqsgdgkvg
MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG
**********RILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLF*************
***********ILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESR**S******
MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAES**********
*****GLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESR*********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query199 2.2.26 [Sep-21-2011]
Q9SWE5209 Phosphopantothenoylcystei yes no 0.984 0.937 0.826 3e-97
P94063201 Probable phosphopantothen no no 0.954 0.945 0.821 2e-93
Q8BZB2204 Phosphopantothenoylcystei yes no 0.879 0.857 0.502 9e-46
Q96CD2204 Phosphopantothenoylcystei yes no 0.929 0.906 0.471 8e-43
Q9UTI7 625 Probable thymidylate synt yes no 0.839 0.267 0.465 3e-37
Q54Y51197 Putative phosphopantothen yes no 0.884 0.893 0.426 2e-36
P36076571 Coenzyme A biosynthesis p yes no 0.964 0.336 0.407 1e-32
Q08438674 Phosphopantothenoylcystei no no 0.648 0.191 0.462 1e-28
P36024562 Phosphopantothenoylcystei no no 0.608 0.215 0.475 1e-27
Q12600531 Protein SIS2 OS=Candida t N/A no 0.788 0.295 0.410 2e-26
>sp|Q9SWE5|HAL3A_ARATH Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1 Back     alignment and function desciption
 Score =  353 bits (907), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 162/196 (82%), Positives = 180/196 (91%)

Query: 1   MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVI 60
           M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP++V 
Sbjct: 11  MEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVT 70

Query: 61  FYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
            YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+RAWD
Sbjct: 71  LYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWD 130

Query: 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIY 180
           Y KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLACGDYGNGAMAEPSLIY
Sbjct: 131 YTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEPSLIY 190

Query: 181 STVRLFAESRNQSGDG 196
           STVRLF ES+     G
Sbjct: 191 STVRLFWESQAHQQTG 206
Involved in plant growth and salt and osmotic tolerance. Catalyzes the decarboxylation of 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a key step in coenzyme A biosynthesis. The enzyme is also able to decarboxylate pantothenoylcysteine to pantothenoylcysteamine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 6
>sp|P94063|HAL3B_ARATH Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3B PE=2 SV=2 Back     alignment and function description
>sp|Q8BZB2|COAC_MOUSE Phosphopantothenoylcysteine decarboxylase OS=Mus musculus GN=Ppcdc PE=2 SV=1 Back     alignment and function description
>sp|Q96CD2|COAC_HUMAN Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens GN=PPCDC PE=1 SV=2 Back     alignment and function description
>sp|Q9UTI7|TYSY_SCHPO Probable thymidylate synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC15E1.04 PE=3 SV=1 Back     alignment and function description
>sp|Q54Y51|COAC_DICDI Putative phosphopantothenoylcysteine decarboxylase OS=Dictyostelium discoideum GN=ppcdc PE=3 SV=1 Back     alignment and function description
>sp|P36076|CAB3_YEAST Coenzyme A biosynthesis protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CAB3 PE=1 SV=1 Back     alignment and function description
>sp|Q08438|VHS3_YEAST Phosphopantothenoylcysteine decarboxylase subunit VHS3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VHS3 PE=1 SV=1 Back     alignment and function description
>sp|P36024|SIS2_YEAST Phosphopantothenoylcysteine decarboxylase subunit SIS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SIS2 PE=1 SV=1 Back     alignment and function description
>sp|Q12600|SIS2_CANTR Protein SIS2 OS=Candida tropicalis GN=SIS2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
255570655212 phosphopentothenoylcysteine decarboxylas 1.0 0.938 0.919 1e-106
118483279217 unknown [Populus trichocarpa] 0.974 0.894 0.917 1e-103
224133816207 predicted protein [Populus trichocarpa] 0.974 0.937 0.917 1e-103
357514735212 Phosphopantothenoylcysteine decarboxylas 0.994 0.933 0.854 5e-98
351724523211 uncharacterized protein LOC100499989 [Gl 0.994 0.938 0.838 2e-97
388518215213 unknown [Medicago truncatula] 0.994 0.929 0.844 6e-97
449469602212 PREDICTED: phosphopantothenoylcysteine d 0.969 0.910 0.865 1e-96
359807604214 uncharacterized protein LOC100778368 [Gl 0.994 0.925 0.828 1e-95
15229569209 phosphopantothenoylcysteine decarboxylas 0.984 0.937 0.826 1e-95
297834710209 hypothetical protein ARALYDRAFT_479290 [ 0.984 0.937 0.821 2e-95
>gi|255570655|ref|XP_002526282.1| phosphopentothenoylcysteine decarboxylase, putative [Ricinus communis] gi|223534363|gb|EEF36071.1| phosphopentothenoylcysteine decarboxylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  390 bits (1002), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 183/199 (91%), Positives = 192/199 (96%)

Query: 1   MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVI 60
           MQVN   RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATK+SLHFIDRA+LPKDV+
Sbjct: 14  MQVNASPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKASLHFIDRASLPKDVV 73

Query: 61  FYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
            YTDEDEW++WNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTC+VRAWD
Sbjct: 74  LYTDEDEWSSWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCVVRAWD 133

Query: 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIY 180
           YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV+KRLACGDYGNGAMAEPSLIY
Sbjct: 134 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLACGDYGNGAMAEPSLIY 193

Query: 181 STVRLFAESRNQSGDGKVG 199
           ST+RLF ESR Q GDG+VG
Sbjct: 194 STIRLFLESRPQPGDGRVG 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118483279|gb|ABK93542.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224133816|ref|XP_002321668.1| predicted protein [Populus trichocarpa] gi|222868664|gb|EEF05795.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357514735|ref|XP_003627656.1| Phosphopantothenoylcysteine decarboxylase [Medicago truncatula] gi|355521678|gb|AET02132.1| Phosphopantothenoylcysteine decarboxylase [Medicago truncatula] Back     alignment and taxonomy information
>gi|351724523|ref|NP_001235269.1| uncharacterized protein LOC100499989 [Glycine max] gi|255628357|gb|ACU14523.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|388518215|gb|AFK47169.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449469602|ref|XP_004152508.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like [Cucumis sativus] gi|449487722|ref|XP_004157768.1| PREDICTED: phosphopantothenoylcysteine decarboxylase-like [Cucumis sativus] gi|307136125|gb|ADN33971.1| phosphopentothenoylcysteine decarboxylase [Cucumis melo subsp. melo] Back     alignment and taxonomy information
>gi|359807604|ref|NP_001240905.1| uncharacterized protein LOC100778368 [Glycine max] gi|255636754|gb|ACU18711.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|15229569|ref|NP_188430.1| phosphopantothenoylcysteine decarboxylase [Arabidopsis thaliana] gi|13124313|sp|Q9SWE5.1|HAL3A_ARATH RecName: Full=Phosphopantothenoylcysteine decarboxylase; Short=PPCDC; AltName: Full=Halotolerance protein Hal3a; Short=AtCoaC; Short=AtHal3a gi|10835869|pdb|1E20|A Chain A, The Fmn Binding Protein Athal3 gi|5802225|gb|AAD51616.1|AF166262_1 HAL3A protein [Arabidopsis thaliana] gi|11994209|dbj|BAB01331.1| HAL3A protein [Arabidopsis thaliana] gi|48310154|gb|AAT41764.1| At3g18030 [Arabidopsis thaliana] gi|52218792|gb|AAU29466.1| At3g18030 [Arabidopsis thaliana] gi|110737049|dbj|BAF00478.1| HAL3A protein [Arabidopsis thaliana] gi|332642515|gb|AEE76036.1| phosphopantothenoylcysteine decarboxylase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297834710|ref|XP_002885237.1| hypothetical protein ARALYDRAFT_479290 [Arabidopsis lyrata subsp. lyrata] gi|297331077|gb|EFH61496.1| hypothetical protein ARALYDRAFT_479290 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query199
TAIR|locus:2087669209 HAL3A "HAL3-like protein A" [A 0.974 0.928 0.831 1.4e-89
TAIR|locus:1006230763201 ATHAL3B [Arabidopsis thaliana 0.984 0.975 0.802 2e-86
ZFIN|ZDB-GENE-040426-1749231 ppcdc "phosphopantothenoylcyst 0.914 0.787 0.529 6.2e-46
MGI|MGI:1914062204 Ppcdc "phosphopantothenoylcyst 0.879 0.857 0.502 2.8e-43
RGD|1306267204 Ppcdc "phosphopantothenoylcyst 0.879 0.857 0.502 2.8e-43
UNIPROTKB|D3ZZZ5242 Ppcdc "Protein Ppcdc" [Rattus 0.879 0.723 0.502 2.8e-43
UNIPROTKB|E1BUI2204 PPCDC "Uncharacterized protein 0.904 0.882 0.494 4.5e-43
UNIPROTKB|Q58DB8230 MDS018 "Putative uncharacteriz 0.879 0.760 0.491 1.5e-42
UNIPROTKB|I3LFK1220 PPCDC "Uncharacterized protein 0.879 0.795 0.491 3.2e-42
FB|FBgn0050290191 Ppcdc "Phosphopantothenoylcyst 0.894 0.931 0.462 5.2e-42
TAIR|locus:2087669 HAL3A "HAL3-like protein A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 163/196 (83%), Positives = 182/196 (92%)

Query:     1 MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVI 60
             M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP++V 
Sbjct:    11 MEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVT 70

Query:    61 FYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
              YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+RAWD
Sbjct:    71 LYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWD 130

Query:   121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIY 180
             Y KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLACGDYGNGAMAEPSLIY
Sbjct:   131 YTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEPSLIY 190

Query:   181 STVRLFAESR--NQSG 194
             STVRLF ES+   Q+G
Sbjct:   191 STVRLFWESQAHQQTG 206
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0042538 "hyperosmotic salinity response" evidence=IEP;IMP
GO:0010181 "FMN binding" evidence=ISS
GO:0004633 "phosphopantothenoylcysteine decarboxylase activity" evidence=IDA;TAS
GO:0015937 "coenzyme A biosynthetic process" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:1006230763 ATHAL3B [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1749 ppcdc "phosphopantothenoylcysteine decarboxylase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1914062 Ppcdc "phosphopantothenoylcysteine decarboxylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306267 Ppcdc "phosphopantothenoylcysteine decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D3ZZZ5 Ppcdc "Protein Ppcdc" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BUI2 PPCDC "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DB8 MDS018 "Putative uncharacterized protein MDS018" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LFK1 PPCDC "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0050290 Ppcdc "Phosphopantothenoylcysteine decarboxylase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96CD2COAC_HUMAN4, ., 1, ., 1, ., 3, 60.47120.92960.9068yesno
Q9SWE5HAL3A_ARATH4, ., 1, ., 1, ., 3, 60.82650.98490.9377yesno
Q8BZB2COAC_MOUSE4, ., 1, ., 1, ., 3, 60.50270.87930.8578yesno
Q54Y51COAC_DICDI4, ., 1, ., 1, ., 3, 60.42620.88440.8934yesno
P94063HAL3B_ARATH4, ., 1, ., 1, ., 3, 60.82100.95470.9452nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.1.360.979
3rd Layer4.1.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XV.1934.1
SubName- Full=Putative uncharacterized protein; (185 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00570163
4-phosphopantetheine adenylyltransferase (EC-2.7.7.3) (178 aa)
     •• 0.946
estExt_Genewise1_v1.C_LG_II1144
hypothetical protein (328 aa)
     •• 0.935
estExt_fgenesh4_pg.C_LG_XV0519
pantothenate kinase (EC-2.7.1.33) (872 aa)
     •• 0.919
eugene3.00120751
pantothenate kinase (EC-2.7.1.33) (939 aa)
     •• 0.918
fgenesh4_pm.C_LG_X000827
dephospho-CoA kinase (EC-2.7.1.24) (232 aa)
     •• 0.485

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
PLN02496209 PLN02496, PLN02496, probable phosphopantothenoylcy 1e-150
PRK05579 399 PRK05579, PRK05579, bifunctional phosphopantotheno 1e-50
PRK07313182 PRK07313, PRK07313, phosphopantothenoylcysteine de 8e-48
pfam02441132 pfam02441, Flavoprotein, Flavoprotein 1e-42
TIGR00521 390 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine 2e-36
TIGR02113177 TIGR02113, coaC_strep, phosphopantothenoylcysteine 1e-35
COG0452 392 COG0452, Dfp, Phosphopantothenoylcysteine syntheta 2e-35
PRK13982 475 PRK13982, PRK13982, bifunctional SbtC-like/phospho 6e-26
PRK06029185 PRK06029, PRK06029, 3-octaprenyl-4-hydroxybenzoate 2e-06
PRK05920204 PRK05920, PRK05920, aromatic acid decarboxylase; V 2e-05
COG0163191 COG0163, UbiX, 3-polyprenyl-4-hydroxybenzoate deca 3e-05
TIGR00421181 TIGR00421, ubiX_pad, polyprenyl P-hydroxybenzoate 7e-04
PRK08305196 PRK08305, spoVFB, dipicolinate synthase subunit B; 0.004
>gnl|CDD|215274 PLN02496, PLN02496, probable phosphopantothenoylcysteine decarboxylase Back     alignment and domain information 
 Score =  414 bits (1065), Expect = e-150
 Identities = 180/199 (90%), Positives = 188/199 (94%)

Query: 1   MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVI 60
           M+VNT  RKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAV TK+SLHFIDRA+LPKDV 
Sbjct: 11  MEVNTAPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVVTKASLHFIDRASLPKDVT 70

Query: 61  FYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
            YTDEDEW++WNKIGDSVLHIELRRWAD+MVIAPLSANTLGKIAGGLCDNLLTCIVRAWD
Sbjct: 71  LYTDEDEWSSWNKIGDSVLHIELRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 130

Query: 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIY 180
           Y+KPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPV+KRLACGDYGNGAMAEPSLIY
Sbjct: 131 YSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVTKRLACGDYGNGAMAEPSLIY 190

Query: 181 STVRLFAESRNQSGDGKVG 199
           STVRLF ESR QS  G V 
Sbjct: 191 STVRLFLESRAQSQSGGVS 209

Length = 209
>gnl|CDD|235513 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated Back     alignment and domain information
>gnl|CDD|235986 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase; Validated Back     alignment and domain information
>gnl|CDD|217035 pfam02441, Flavoprotein, Flavoprotein Back     alignment and domain information
>gnl|CDD|233006 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase Back     alignment and domain information
>gnl|CDD|131168 TIGR02113, coaC_strep, phosphopantothenoylcysteine decarboxylase, streptococcal Back     alignment and domain information
>gnl|CDD|223529 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|172484 PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional Back     alignment and domain information
>gnl|CDD|235677 PRK06029, PRK06029, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional Back     alignment and domain information
>gnl|CDD|180312 PRK05920, PRK05920, aromatic acid decarboxylase; Validated Back     alignment and domain information
>gnl|CDD|223241 COG0163, UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|129515 TIGR00421, ubiX_pad, polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases Back     alignment and domain information
>gnl|CDD|181370 PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 199
PLN02496209 probable phosphopantothenoylcysteine decarboxylase 100.0
PRK07313182 phosphopantothenoylcysteine decarboxylase; Validat 100.0
TIGR02113177 coaC_strep phosphopantothenoylcysteine decarboxyla 100.0
PRK05579 399 bifunctional phosphopantothenoylcysteine decarboxy 100.0
PRK13982 475 bifunctional SbtC-like/phosphopantothenoylcysteine 100.0
KOG0672218 consensus Halotolerance protein HAL3 (contains fla 100.0
TIGR00521 390 coaBC_dfp phosphopantothenoylcysteine decarboxylas 100.0
PRK05920204 aromatic acid decarboxylase; Validated 100.0
PRK08305196 spoVFB dipicolinate synthase subunit B; Reviewed 100.0
PRK06029185 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Prov 100.0
TIGR00421181 ubiX_pad polyprenyl P-hydroxybenzoate and phenylac 100.0
COG0452 392 Dfp Phosphopantothenoylcysteine synthetase/decarbo 100.0
TIGR02852187 spore_dpaB dipicolinic acid synthetase, B subunit. 100.0
PF02441129 Flavoprotein: Flavoprotein; InterPro: IPR003382 Th 100.0
COG0163191 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase 99.97
TIGR02699174 archaeo_AfpA archaeoflavoprotein AfpA. The prototy 99.96
TIGR02700234 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T 99.92
COG1036187 Archaeal flavoproteins [Energy production and conv 99.86
TIGR02536207 eut_hyp ethanolamine utilization protein. This fam 98.39
PF06258311 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterP 89.3
PF03033139 Glyco_transf_28: Glycosyltransferase family 28 N-t 84.66
PRK10116142 universal stress protein UspC; Provisional 84.1
COG1819406 Glycosyl transferases, related to UDP-glucuronosyl 84.04
COG3660329 Predicted nucleoside-diphosphate-sugar epimerase [ 80.95
PF00289110 CPSase_L_chain: Carbamoyl-phosphate synthase L cha 80.88
>PLN02496 probable phosphopantothenoylcysteine decarboxylase Back     alignment and domain information 
Probab=100.00  E-value=4.2e-60  Score=388.68  Aligned_cols=198  Identities=91%  Similarity=1.459  Sum_probs=185.4

Q ss_pred             CcccCCCCCCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecccHHHHhchhcCCCCCeeEeCccchhccccCCCcccc
Q 029085            1 MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLH   80 (199)
Q Consensus         1 ~~~~~~~~~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~A~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h   80 (199)
                      |..|...++|||++|+|||+++||+++++|.|++|++|+|+||++|.+|+++++|+...++|+|.++|+.|+.++++.+|
T Consensus        11 ~~~~~~~~~k~IllgVtGSIAAyk~~~lvr~L~~g~~V~VvmT~~A~~FI~p~~l~~~~~v~td~~~~~~~~~~~~~~~H   90 (209)
T PLN02496         11 MEVNTAPRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVVTKASLHFIDRASLPKDVTLYTDEDEWSSWNKIGDSVLH   90 (209)
T ss_pred             hhhccCCCCCEEEEEEeCHHHHHHHHHHHHHhcCCCeEEEEEChhHhhhcCHHHcCCCCcEEeCcccccccccCCCCcch
Confidence            34677788999999999999999999999999888999999999999999999997545799998888766666678899


Q ss_pred             ccccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCC
Q 029085           81 IELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVS  160 (199)
Q Consensus        81 ~~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~  160 (199)
                      ++|.+|||+|||+|||+|||||+|+|||||++++++++++.++|++++|+||+.||+||++|+|+++|+++|++|++|..
T Consensus        91 I~La~wAD~~vVaPaTaNtlaKiA~GiaDnlltt~l~a~~~~~Pv~iaPaMN~~Mw~~Pat~~nl~~L~~~G~~vi~P~~  170 (209)
T PLN02496         91 IELRRWADVMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYSKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVT  170 (209)
T ss_pred             hHhhhhhCEEEEEeCCHHHHHHHHcccCCcHHHHHHHHcCCCCCEEEEeCCCHHHHhCHHHHHHHHHHHHCCCEEECCCc
Confidence            99999999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCCChHHHHHHHHHhccCCCCCCCCCC
Q 029085          161 KRLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDGKV  198 (199)
Q Consensus       161 g~~a~g~~g~~~~~~~e~i~~~v~~~~~~~~l~~~~~~  198 (199)
                      |.+|||+.|.|||++||+|+..+..++..++++|+|-|
T Consensus       171 g~lAcg~~G~Grm~ep~~I~~~i~~~l~~~~~~~~~~~  208 (209)
T PLN02496        171 KRLACGDYGNGAMAEPSLIYSTVRLFLESRAQSQSGGV  208 (209)
T ss_pred             CcccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCCC
Confidence            99999999999999999999999999998999988865

>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated Back     alignment and domain information
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal Back     alignment and domain information
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated Back     alignment and domain information
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional Back     alignment and domain information
>KOG0672 consensus Halotolerance protein HAL3 (contains flavoprotein domain) [Inorganic ion transport and metabolism; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic Back     alignment and domain information
>PRK05920 aromatic acid decarboxylase; Validated Back     alignment and domain information
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed Back     alignment and domain information
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional Back     alignment and domain information
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases Back     alignment and domain information
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit Back     alignment and domain information
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN [] Back     alignment and domain information
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA Back     alignment and domain information
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family Back     alignment and domain information
>COG1036 Archaeal flavoproteins [Energy production and conversion] Back     alignment and domain information
>TIGR02536 eut_hyp ethanolamine utilization protein Back     alignment and domain information
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins Back     alignment and domain information
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
1e20_A209 The Fmn Binding Protein Athal3 Length = 209 2e-98
1mvl_A209 Ppc Decarboxylase Mutant C175s Length = 209 2e-97
1qzu_A206 Crystal Structure Of Human Phosphopantothenoylcyste 7e-44
3qjg_A175 Epidermin Biosynthesis Protein Epid From Staphyloco 3e-13
1g63_A181 Peptidyl-Cysteine Decarboxylase Epid Length = 181 8e-13
1p3y_1194 Mrsd From Bacillus Sp. Hil-y85/54728 Length = 194 2e-12
1g5q_A181 Epid H67n Complexed With Substrate Peptide Dsytc Le 5e-12
>pdb|1E20|A Chain A, The Fmn Binding Protein Athal3 Length = 209 Back     alignment and structure 
Iteration: 1

 Score =  353 bits (907), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 162/196 (82%), Positives = 180/196 (91%)
Query: 1   MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVI 60
           M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP++V 
Sbjct: 11  MEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVT 70
Query: 61  FYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
            YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+RAWD
Sbjct: 71  LYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWD 130
Query: 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIY 180
           Y KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLACGDYGNGAMAEPSLIY
Sbjct: 131 YTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLACGDYGNGAMAEPSLIY 190
Query: 181 STVRLFAESRNQSGDG 196
           STVRLF ES+     G
Sbjct: 191 STVRLFWESQAHQQTG 206
>pdb|1MVL|A Chain A, Ppc Decarboxylase Mutant C175s Length = 209 Back     alignment and structure
>pdb|1QZU|A Chain A, Crystal Structure Of Human Phosphopantothenoylcysteine Decarboxylase Length = 206 Back     alignment and structure
>pdb|3QJG|A Chain A, Epidermin Biosynthesis Protein Epid From Staphylococcus Aureus Length = 175 Back     alignment and structure
>pdb|1G63|A Chain A, Peptidyl-Cysteine Decarboxylase Epid Length = 181 Back     alignment and structure
>pdb|1P3Y|1 Chain 1, Mrsd From Bacillus Sp. Hil-y85/54728 Length = 194 Back     alignment and structure
>pdb|1G5Q|A Chain A, Epid H67n Complexed With Substrate Peptide Dsytc Length = 181 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query199
1mvl_A209 PPC decarboxylase athal3A; flavoprotein, active si 2e-94
1qzu_A206 Hypothetical protein MDS018; alpha-beta sandwich, 3e-78
1p3y_1194 MRSD protein; flavoprotein, FMN, rossmann fold, HF 2e-49
3qjg_A175 Epidermin biosynthesis protein EPID; structural ge 1e-47
1g63_A181 Epidermin modifying enzyme EPID; alpha, beta prote 9e-47
3lqk_A201 Dipicolinate synthase subunit B; flavoprotein, PSI 8e-34
3mcu_A207 Dipicolinate synthase, B chain; NESG, structural g 1e-31
2ejb_A189 Probable aromatic acid decarboxylase; phenylacryli 5e-20
3zqu_A209 Probable aromatic acid decarboxylase; lyase; HET: 2e-15
1sbz_A197 Probable aromatic acid decarboxylase; FMN binding, 3e-13
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A* Length = 209 Back     alignment and structure
 Score =  272 bits (699), Expect = 2e-94
 Identities = 160/192 (83%), Positives = 178/192 (92%)

Query: 1   MQVNTGLRKPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVI 60
           M+VNT  RKPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP++V 
Sbjct: 11  MEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVT 70

Query: 61  FYTDEDEWATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWD 120
            YTDEDEW++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+RAWD
Sbjct: 71  LYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWD 130

Query: 121 YNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIY 180
           Y KPLFVAPAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLA GDYGNGAMAEPSLIY
Sbjct: 131 YTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLASGDYGNGAMAEPSLIY 190

Query: 181 STVRLFAESRNQ 192
           STVRLF ES+  
Sbjct: 191 STVRLFWESQAH 202
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1 Length = 206 Back     alignment and structure
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1 Length = 194 Back     alignment and structure
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} Length = 175 Back     alignment and structure
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A* Length = 181 Back     alignment and structure
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans} Length = 201 Back     alignment and structure
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus} Length = 207 Back     alignment and structure
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus} Length = 189 Back     alignment and structure
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} Length = 209 Back     alignment and structure
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1 Length = 197 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query199
1mvl_A209 PPC decarboxylase athal3A; flavoprotein, active si 100.0
1qzu_A206 Hypothetical protein MDS018; alpha-beta sandwich, 100.0
1p3y_1194 MRSD protein; flavoprotein, FMN, rossmann fold, HF 100.0
1g63_A181 Epidermin modifying enzyme EPID; alpha, beta prote 100.0
3qjg_A175 Epidermin biosynthesis protein EPID; structural ge 100.0
3mcu_A207 Dipicolinate synthase, B chain; NESG, structural g 100.0
3zqu_A209 Probable aromatic acid decarboxylase; lyase; HET: 100.0
3lqk_A201 Dipicolinate synthase subunit B; flavoprotein, PSI 100.0
2ejb_A189 Probable aromatic acid decarboxylase; phenylacryli 100.0
1sbz_A197 Probable aromatic acid decarboxylase; FMN binding, 100.0
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 90.87
3tsa_A391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 87.7
3s2u_A 365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 84.53
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 83.92
3rsc_A 415 CALG2; TDP, enediyne, structural genomics, PSI-2, 82.49
2iz6_A176 Molybdenum cofactor carrier protein; metal transpo 82.3
3loq_A294 Universal stress protein; structural genomics, PSI 82.21
3ia7_A402 CALG4; glycosysltransferase, calicheamicin, enediy 81.7
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 80.63
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A* Back     alignment and structure
Probab=100.00  E-value=8e-60  Score=387.87  Aligned_cols=193  Identities=82%  Similarity=1.365  Sum_probs=164.6

Q ss_pred             ccCCCCCCcEEEEEcChHHHHHHHHHHHHhhc-CCeEEEEecccHHHHhchhcCCCCCeeEeCccchhccccCCCccccc
Q 029085            3 VNTGLRKPRILLAASGSVAAIKFGNLCHCFSE-WAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHI   81 (199)
Q Consensus         3 ~~~~~~~k~ill~iTGs~~~~~~~~li~~L~~-g~eV~vv~T~~A~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h~   81 (199)
                      .++.+.+|||+||+|||+++||++++++.|++ + +|+|++|++|.+|++++.++++.++|+|.++|..|.+.++++.|+
T Consensus        13 ~~~~l~~k~IllgvTGsiaa~k~~~ll~~L~~~g-~V~vv~T~~A~~fv~~~~~~~~~~v~~d~~~~~~~~~~~~~i~hi   91 (209)
T 1mvl_A           13 VNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWA-EVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHI   91 (209)
T ss_dssp             ------CCEEEEEECSSGGGGGHHHHHHHHHTTS-EEEEEECTGGGGTCCGGGSCTTCEEECTTHHHHHCSSTTSCCHHH
T ss_pred             cccccCCCEEEEEEeCcHHHHHHHHHHHHHhcCC-CEEEEEcchHHHhcCHHHhhcCCeEEeCccccccccccCCCccch
Confidence            34566789999999999999999999999987 8 999999999999999999987889999988887776667789999


Q ss_pred             cccccccEEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCc
Q 029085           82 ELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSK  161 (199)
Q Consensus        82 ~l~~~aD~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g  161 (199)
                      ++.+|+|+|||+|||+|||||+|+||||||++++++|++.++|++++|+||+.||+||++|+||++|+++|++|+||..|
T Consensus        92 ~l~~~aD~mvIaPaTanTlAKiA~GiaDnLlt~~~~A~d~~~pvvlaPaMN~~M~e~P~t~~nl~~L~~~G~~ivpP~~g  171 (209)
T 1mvl_A           92 ELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKK  171 (209)
T ss_dssp             HHHHHCSEEEEEEECHHHHHHHHHTCCSSHHHHHHHTCCTTSCEEEEECCCHHHHHSHHHHHHHHHHHHHTCEECCCBC-
T ss_pred             hhcccCCEEEEecCCHHHHHHHHccccCcHHHHHHHHhcCCCCEEEEECCChhHhhChhHHHHHHHHHHCCCEEeCCccc
Confidence            99999999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCChHHHHHHHHHhccCCCCCCCC
Q 029085          162 RLACGDYGNGAMAEPSLIYSTVRLFAESRNQSGDG  196 (199)
Q Consensus       162 ~~a~g~~g~~~~~~~e~i~~~v~~~~~~~~l~~~~  196 (199)
                      +++||+.|.|+|++||+|++++..++..++|+|+.
T Consensus       172 ~lacg~~G~gr~~~~~~Iv~~v~~~l~~~~l~~~~  206 (209)
T 1mvl_A          172 RLASGDYGNGAMAEPSLIYSTVRLFWESQAHQQTG  206 (209)
T ss_dssp             --------CCBCCCHHHHHHHHHHHHHHC------
T ss_pred             cccCCCcCCCCCCCHHHHHHHHHHHhCCCccCCCC
Confidence            99999999999999999999999999889999985
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1 Back     alignment and structure
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1 Back     alignment and structure
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A* Back     alignment and structure
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0 Back     alignment and structure
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus} Back     alignment and structure
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0 Back     alignment and structure
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans} Back     alignment and structure
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus} Back     alignment and structure
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1 Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 199
d1mvla_182 c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decar 6e-56
d1qzua_181 c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decar 1e-49
d1p3y1_183 c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [Ta 2e-34
d1sbza_186 c.34.1.1 (A:) Probable aromatic acid decarboxylase 4e-29
d1g5qa_174 c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl 2e-27
>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 182 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  173 bits (439), Expect = 6e-56
 Identities = 155/182 (85%), Positives = 172/182 (94%)

Query: 9   KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEW 68
           KPR+LLAASGSVAAIKFGNLCHCF+EWAEVRAV TKSSLHF+D+ +LP++V  YTDEDEW
Sbjct: 1   KPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEW 60

Query: 69  ATWNKIGDSVLHIELRRWADIMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVA 128
           ++WNKIGD VLHIELRRWAD++VIAPLSANTLGKIAGGLCDNLLTCI+RAWDY KPLFVA
Sbjct: 61  SSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVA 120

Query: 129 PAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDYGNGAMAEPSLIYSTVRLFAE 188
           PAMNT MWNNPFTERHL+S+DELGI+LIPP+ KRLA GDYGNGAMAEPSLIYSTVRLF E
Sbjct: 121 PAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLASGDYGNGAMAEPSLIYSTVRLFWE 180

Query: 189 SR 190
           S+
Sbjct: 181 SQ 182
>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]} Length = 181 Back     information, alignment and structure
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} Length = 183 Back     information, alignment and structure
>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]} Length = 186 Back     information, alignment and structure
>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]} Length = 174 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query199
d1mvla_182 4'-phosphopantothenoylcysteine decarboxylase (PPC 100.0
d1qzua_181 4'-phosphopantothenoylcysteine decarboxylase (PPC 100.0
d1p3y1_183 MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} 100.0
d1g5qa_174 Epidermin modifying enzyme (peptidyl-cysteine deca 100.0
d1sbza_186 Probable aromatic acid decarboxylase Pad1 {Escheri 100.0
d1k92a1188 Argininosuccinate synthetase, N-terminal domain {E 88.38
d1vl2a1168 Argininosuccinate synthetase, N-terminal domain {T 86.89
d1pn3a_ 391 TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi 84.92
d1rrva_ 401 TDP-vancosaminyltransferase GftD {Amycolatopsis or 82.85
d1iiba_103 Enzyme IIB-cellobiose {Escherichia coli [TaxId: 56 81.82
d1ni5a1227 tRNA-Ile-lysidine synthetase, TilS, N-terminal dom 80.34
d2hmva1134 Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} 80.14
>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.2e-60  Score=383.27  Aligned_cols=181  Identities=86%  Similarity=1.457  Sum_probs=161.1

Q ss_pred             CCcEEEEEcChHHHHHHHHHHHHhhcCCeEEEEecccHHHHhchhcCCCCCeeEeCccchhccccCCCcccccccccccc
Q 029085            9 KPRILLAASGSVAAIKFGNLCHCFSEWAEVRAVATKSSLHFIDRAALPKDVIFYTDEDEWATWNKIGDSVLHIELRRWAD   88 (199)
Q Consensus         9 ~k~ill~iTGs~~~~~~~~li~~L~~g~eV~vv~T~~A~~fv~~~~l~~~~~v~~~~~~~~~~~~~~~~~~h~~l~~~aD   88 (199)
                      |+||++|+|||+++||+++|+|.|++++||+|++|++|.+|+++.+++.....+.+.+.|..+.+.+++++|+++++|+|
T Consensus         1 k~kIllgvtGsiAayk~~~L~r~L~~~~~V~vv~T~~A~~fi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Hi~la~~aD   80 (182)
T d1mvla_           1 KPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWAD   80 (182)
T ss_dssp             CCEEEEEECSSGGGGGHHHHHHHHHTTSEEEEEECTGGGGTCCGGGSCTTCEEECTTHHHHHCSSTTSCCHHHHHHHHCS
T ss_pred             CCEEEEEEecHHHHHHHHHHHHHHhcCCeEEEEEchhHHHhhhhhhhceeeeeeecccccccccccCCchhhhhhhcccc
Confidence            57999999999999999999999988999999999999999999999866666777777877776677789999999999


Q ss_pred             EEEEccCCHHHHHHHHhcccCcHHHHHHHHhcCCCcEEEEeccChhhhhChHHHHHHHHHHHCCCEEeCCCCcccccCCC
Q 029085           89 IMVIAPLSANTLGKIAGGLCDNLLTCIVRAWDYNKPLFVAPAMNTFMWNNPFTERHLMSIDELGISLIPPVSKRLACGDY  168 (199)
Q Consensus        89 ~~vVaPaTanTlaKiA~GiaDnllt~~~~a~~~~~Pvvi~P~mn~~m~~~p~~~~nl~~L~~~G~~vv~P~~g~~a~g~~  168 (199)
                      ++||+|||+|||||+|+|||||+++++++|++.++|++++|+||+.||+||++|+||++|+++|++|++|..|.+|||++
T Consensus        81 ~~iVaPATANtiaK~A~GiaD~llt~~~la~~~~kPv~iaPaMn~~Mw~~p~t~~Nl~~L~~~G~~vi~P~~G~lacg~~  160 (182)
T d1mvla_          81 VLVIAPLSANTLGKIAGGLCDNLLTCIIRAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELGITLIPPIKKRLASGDY  160 (182)
T ss_dssp             EEEEEEECHHHHHHHHHTCCSSHHHHHHHTCCTTSCEEEEECCCHHHHHSHHHHHHHHHHHHHTCEECCCBC--------
T ss_pred             EEEEEeccHHHHHHHHcCCcchhhHHHHHhccCCCCEEEEecccHHHHhhHHHHHHHHHHhccCCEEECCCcceecCCCc
Confidence            99999999999999999999999998888988789999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHhccC
Q 029085          169 GNGAMAEPSLIYSTVRLFAES  189 (199)
Q Consensus       169 g~~~~~~~e~i~~~v~~~~~~  189 (199)
                      |.|||++||+|+++++.+++.
T Consensus       161 G~Gr~~ep~~I~~~i~~~~~~  181 (182)
T d1mvla_         161 GNGAMAEPSLIYSTVRLFWES  181 (182)
T ss_dssp             -CCBCCCHHHHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHhhc
Confidence            999999999999999988764
>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} Back     information, alignment and structure
>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]} Back     information, alignment and structure
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1rrva_ c.87.1.5 (A:) TDP-vancosaminyltransferase GftD {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure
>d1iiba_ c.44.2.1 (A:) Enzyme IIB-cellobiose {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure