Citrus Sinensis ID: 029090

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MSGAGGIAKACAAAAAEGSSRSSTGTTICSGDRHHQPQPQPQPHPVPLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIPYKKKKKKKYHQIKSNNDEPAKSSRQST
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccHHHHcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHcccHHHHHHHHHHHHHccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSGAGGIAKACAAAAaegssrsstgtticsgdrhhqpqpqpqphpvplsryesqkrrdWNTFGqylknqrppvslsqcscnhVLDFLRYLDQFgktkvhlhgcvffgqpdppapctcplrqaWGSLDALIGRLRAAYeehggspetnpfgngAIRVYLREVRECQAkargipykkkkkkKYHQIksnndepakssrqst
Flexible Loop (DISEMBL)
MSGAGGIAKACAAaaaegssrssTGTTICSGDRhhqpqpqpqphpvpLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEehggspetnpfgnGAIRVYLREVRECQakargipykkkkkkkyhqiksnndepakssrqst
Low Complexity Region (SEG)
MsgaggiakacaaaaaegssrsstgtticsgDRhhqpqpqpqphpVPLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIPYkkkkkkkYHQIKSNNDEPAKSSRQST
Disordered region (IsUnstruct)
**********************************************************WNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEE********PFGNGAIRVYLREVREC***********************************
Disordered Region (DISOPRED)
**********************************************************WNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCV*****DPPAPCTCPLRQAWGSLDALIGR*****************GNGAIRVYLREVRECQ**********************************
Disordered Region (DISEMBL)
**********************************************PLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIP***************************
Disordered Region (DISPRO)
***********************************************LSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIPYK*K***********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSGAGGIAKACAAAAAEGSSRSSTGTTICSGDRHHQPQPQPQPHPVPLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIPYKKKKKKKYHQIKSNNDEPAKSSRQST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
147795605	175	hypothetical protein VITISV_012478 [Viti	0.834	0.948	0.820	1e-75
255563158	180	conserved hypothetical protein [Ricinus	0.854	0.944	0.819	8e-74
449467527	187	PREDICTED: uncharacterized protein LOC10	0.693	0.737	0.928	2e-72
224116896	177	predicted protein [Populus trichocarpa]	0.804	0.903	0.822	2e-72
224079089	177	predicted protein [Populus trichocarpa]	0.728	0.819	0.849	4e-72
449534332	191	PREDICTED: uncharacterized protein LOC10	0.668	0.696	0.947	1e-71
356543912	175	PREDICTED: uncharacterized protein LOC10	0.793	0.902	0.798	4e-70
351721022	175	uncharacterized protein LOC100306225 [Gl	0.778	0.885	0.796	4e-69
351722585	181	uncharacterized protein LOC100306082 [Gl	0.814	0.895	0.803	4e-69
388522259	184	unknown [Medicago truncatula]	0.788	0.853	0.810	9e-69

>gi|147795605|emb|CAN72178.1| hypothetical protein VITISV_012478 [Vitis vinifera]

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/184 (82%), Positives = 161/184 (87%), Gaps = 18/184 (9%)

Query: 15  AAEGSSRSSTGTTICSGDRHHQPQPQPQPHPVPLSRYESQKRRDWNTFGQYLKNQRPPVS 74
           +AEGSSRS+                +PQ  P PLSRYESQKRRDWNTFGQYLKNQRPPVS
Sbjct: 9   SAEGSSRSTG---------------EPQQQPQPLSRYESQKRRDWNTFGQYLKNQRPPVS 53

Query: 75  LSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLR 134
           L+QCSCNHVL+FLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLR
Sbjct: 54  LAQCSCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLR 113

Query: 135 AAYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIPYKKKKKKKYHQIKSNNDEPAKS 194
           AAYEEHGGSPETNPFGNGAIRVYLREVR+CQ+KARGIPYKKKKKKK +QIK NN+  AKS
Sbjct: 114 AAYEEHGGSPETNPFGNGAIRVYLREVRDCQSKARGIPYKKKKKKK-NQIKPNNE--AKS 170

Query: 195 SRQS 198
           S+QS
Sbjct: 171 SKQS 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563158|ref|XP_002522583.1| conserved hypothetical protein [Ricinus communis] gi|223538274|gb|EEF39883.1| conserved hypothetical protein [Ricinus communis]

 Score =  281 bits (720), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 150/183 (81%), Positives = 154/183 (84%), Gaps = 13/183 (7%)

Query: 15  AAEGSSRSSTGTTICSGDRHHQPQPQPQPHPVPLSRYESQKRRDWNTFGQYLKNQRPPVS 74
           +AEGSSRS        GD+   P       P PLSRYESQKRRDWNTFGQYLKNQRPPVS
Sbjct: 9   SAEGSSRSG-------GDQQLIPH-----QPAPLSRYESQKRRDWNTFGQYLKNQRPPVS 56

Query: 75  LSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLR 134
           LSQC+CNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLR
Sbjct: 57  LSQCNCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLR 116

Query: 135 AAYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIPYKKKKKKKYHQIKSNNDEPAKS 194
           AAYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIPYKKKKKKK +QIK   D     
Sbjct: 117 AAYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIPYKKKKKKK-NQIKPREDAKPSI 175

Query: 195 SRQ 197
           S Q
Sbjct: 176 SMQ 178

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467527|ref|XP_004151474.1| PREDICTED: uncharacterized protein LOC101210225 [Cucumis sativus]

 Score =  277 bits (709), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/139 (92%), Positives = 135/139 (97%), Gaps = 1/139 (0%)

Query: 48  LSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFG 107
           LSRYESQKRRDWNTFGQYLKNQ P VSLSQC+CNHVL+FLRYLDQFGKTKVHLHGCVFFG
Sbjct: 25  LSRYESQKRRDWNTFGQYLKNQTPAVSLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFFG 84

Query: 108 QPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAK 167
           QPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREV+ECQAK
Sbjct: 85  QPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAK 144

Query: 168 ARGIPYKKKKKKKYHQIKS 186
           ARGIPYKKKK+K+  Q+KS
Sbjct: 145 ARGIPYKKKKRKR-TQLKS 162

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116896|ref|XP_002317421.1| predicted protein [Populus trichocarpa] gi|118485045|gb|ABK94387.1| unknown [Populus trichocarpa] gi|222860486|gb|EEE98033.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 144/175 (82%), Positives = 152/175 (86%), Gaps = 15/175 (8%)

Query: 15  AAEGSSRSSTGTTICSGDRHHQPQPQPQPHPVPLSRYESQKRRDWNTFGQYLKNQRPPVS 74
           +AEGSSRS        G  H+QPQP       PLSRYESQKRRDWNTFGQYLKNQRPPVS
Sbjct: 10  SAEGSSRS--------GGDHYQPQP------APLSRYESQKRRDWNTFGQYLKNQRPPVS 55

Query: 75  LSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLR 134
           LSQ +CNHVLDFLRYLDQFGKTKVHLHGCVFFGQP+PPAPCTCPLRQAWGSLDALIGRLR
Sbjct: 56  LSQSNCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPNPPAPCTCPLRQAWGSLDALIGRLR 115

Query: 135 AAYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIPYKKKKKKKYHQIKSNND 189
           AAYEEHGGS ETNPFGNGAIRVYLREV+ECQAKARGIPYKKK KKK  QI++ N+
Sbjct: 116 AAYEEHGGSAETNPFGNGAIRVYLREVKECQAKARGIPYKKKTKKK-TQIRARNE 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079089|ref|XP_002305745.1| predicted protein [Populus trichocarpa] gi|118483353|gb|ABK93578.1| unknown [Populus trichocarpa] gi|222848709|gb|EEE86256.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (705), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 135/159 (84%), Positives = 139/159 (87%), Gaps = 14/159 (8%)

Query: 15  AAEGSSRSSTGTTICSGDRHHQPQPQPQPHPVPLSRYESQKRRDWNTFGQYLKNQRPPVS 74
           +AEGSSRS        G  HHQ Q        PLSRYESQKRRDWNTFGQYLKNQRPPVS
Sbjct: 10  SAEGSSRS--------GGDHHQLQS------APLSRYESQKRRDWNTFGQYLKNQRPPVS 55

Query: 75  LSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLR 134
           LSQC+CNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLR
Sbjct: 56  LSQCNCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLR 115

Query: 135 AAYEEHGGSPETNPFGNGAIRVYLREVRECQAKARGIPY 173
           AA+EEHGGS ETNPFGNGAIRVYLREV+ECQAKARGIPY
Sbjct: 116 AAFEEHGGSAETNPFGNGAIRVYLREVKECQAKARGIPY 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449534332|ref|XP_004174117.1| PREDICTED: uncharacterized protein LOC101228453 [Cucumis sativus]

 Score =  274 bits (701), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 126/133 (94%), Positives = 131/133 (98%)

Query: 48  LSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFG 107
           LSRYESQKRRDWNTFGQYLKNQ P VSLSQC+CNHVL+FLRYLDQFGKTKVHLHGCVFFG
Sbjct: 29  LSRYESQKRRDWNTFGQYLKNQTPAVSLSQCNCNHVLEFLRYLDQFGKTKVHLHGCVFFG 88

Query: 108 QPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAK 167
           QPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREV+ECQAK
Sbjct: 89  QPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVKECQAK 148

Query: 168 ARGIPYKKKKKKK 180
           ARGIPYKKKK+K+
Sbjct: 149 ARGIPYKKKKRKR 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543912|ref|XP_003540402.1| PREDICTED: uncharacterized protein LOC100802937 [Glycine max]

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 127/159 (79%), Positives = 139/159 (87%), Gaps = 1/159 (0%)

Query: 31  GDRHHQPQPQPQPHPVPLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYL 90
           G+    P    Q  P  LSRYESQKRRDWNTFGQYLKNQRPPV LSQC+CNHVLDFLRYL
Sbjct: 10  GEGSSSPTDNYQQSPGTLSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCNHVLDFLRYL 69

Query: 91  DQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFG 150
           DQFGKTKVHL GC+F+GQP+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GGSPETNPF 
Sbjct: 70  DQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFA 129

Query: 151 NGAIRVYLREVRECQAKARGIPYKKKKKKKYHQIKSNND 189
           +G+IRVYL+EVRECQAKARGIPYKKKKK   +Q K N++
Sbjct: 130 SGSIRVYLKEVRECQAKARGIPYKKKKKAS-NQSKGNDE 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721022|ref|NP_001235660.1| uncharacterized protein LOC100306225 [Glycine max] gi|255627929|gb|ACU14309.1| unknown [Glycine max]

 Score =  266 bits (680), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 125/157 (79%), Positives = 137/157 (87%), Gaps = 2/157 (1%)

Query: 22  SSTGTTICSGDRHHQPQPQPQPHPVPLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCN 81
           SS+G  +  G+    P    Q  P  LSRYESQKRRDWNTFGQYLKNQRPPV LSQC+CN
Sbjct: 3   SSSGKDL--GEGSSSPTEDYQQSPGTLSRYESQKRRDWNTFGQYLKNQRPPVPLSQCNCN 60

Query: 82  HVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHG 141
           HVLDFLRYLDQFGKTKVHL GC+F+GQP+PPAPCTCPLRQAWGSLDAL GRLRAAYEE+G
Sbjct: 61  HVLDFLRYLDQFGKTKVHLQGCMFYGQPEPPAPCTCPLRQAWGSLDALTGRLRAAYEENG 120

Query: 142 GSPETNPFGNGAIRVYLREVRECQAKARGIPYKKKKK 178
           GSPETNPF +G+IRVYL+E+RECQAKARGIPYKKKKK
Sbjct: 121 GSPETNPFASGSIRVYLKEIRECQAKARGIPYKKKKK 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722585|ref|NP_001237249.1| uncharacterized protein LOC100306082 [Glycine max] gi|255627477|gb|ACU14083.1| unknown [Glycine max]

 Score =  266 bits (679), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 135/168 (80%), Positives = 146/168 (86%), Gaps = 6/168 (3%)

Query: 32  DRHHQPQPQPQPHPVPLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLD 91
           D+ HQ     QP   PLSRYESQKRRDWNTFGQYLKNQ PPVSLSQC+ NHVL+FLRYLD
Sbjct: 20  DQRHQ-----QPAAAPLSRYESQKRRDWNTFGQYLKNQTPPVSLSQCNFNHVLEFLRYLD 74

Query: 92  QFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGN 151
           QFGKTKVHLHGC+FFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGS ETNPFG+
Sbjct: 75  QFGKTKVHLHGCIFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSAETNPFGS 134

Query: 152 GAIRVYLREVRECQAKARGIPYKKKKKKKYHQIKSNNDEPAKSSRQST 199
           GAIRVYLREV+ECQAKARGIPY KKKKKK +Q+K  +D P    + +T
Sbjct: 135 GAIRVYLREVKECQAKARGIPYTKKKKKK-NQLKGPHDAPKSFKQLAT 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522259|gb|AFK49191.1| unknown [Medicago truncatula]

 Score =  265 bits (676), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 128/158 (81%), Positives = 140/158 (88%), Gaps = 1/158 (0%)

Query: 40  QPQPHPVPLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVH 99
           QP     PLSRYESQK+RDWNTFGQYL+NQ PPVSLSQC+ NHVL+FLRYLDQFGKTKVH
Sbjct: 25  QPTAAVAPLSRYESQKKRDWNTFGQYLRNQSPPVSLSQCNFNHVLEFLRYLDQFGKTKVH 84

Query: 100 LHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLR 159
           LHGC+FFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPE NPFG GAIRVYLR
Sbjct: 85  LHGCIFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPENNPFGTGAIRVYLR 144

Query: 160 EVRECQAKARGIPYKKKKKKKYHQIKSNNDEPAKSSRQ 197
           EV+ECQ+KARGIPY KKKKK+  Q+K  ++  +KS  Q
Sbjct: 145 EVKECQSKARGIPYTKKKKKR-SQLKGTHNTTSKSFNQ 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2041514	177	LSH10 "AT2G42610" [Arabidopsis	0.628	0.706	0.904	1.4e-62
TAIR|locus:2124067	191	LSH9 "AT4G18610" [Arabidopsis	0.638	0.664	0.828	5.3e-56
TAIR|locus:2082170	195	LSH4 "LIGHT SENSITIVE HYPOCOTY	0.633	0.646	0.817	2.3e-55
TAIR|locus:505006228	195	LSH7 "AT1G78815" [Arabidopsis	0.763	0.779	0.666	3.4e-54
TAIR|locus:2055897	219	LSH3 "AT2G31160" [Arabidopsis	0.628	0.570	0.776	8e-53
TAIR|locus:2147494	190	LSH1 "AT5G28490" [Arabidopsis	0.743	0.778	0.671	9.2e-52
TAIR|locus:2100850	201	LSH2 "AT3G04510" [Arabidopsis	0.628	0.621	0.752	1.5e-51
TAIR|locus:2007382	196	LSH6 "AT1G07090" [Arabidopsis	0.748	0.760	0.66	4e-51
TAIR|locus:2171263	182	LSH5 "AT5G58500" [Arabidopsis	0.628	0.686	0.746	4.6e-50
TAIR|locus:2015591	164	LSH8 "AT1G16910" [Arabidopsis	0.633	0.768	0.706	3.3e-47

TAIR|locus:2041514 LSH10 "AT2G42610" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 113/125 (90%), Positives = 120/125 (96%)

Query:    49 SRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQ 108
             SRYESQKRRDWNTFGQYLKNQRPPV +S CSCNHVLDFLRYLDQFGKTKVH+ GC+F+GQ
Sbjct:    24 SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query:   109 PDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAKA 168
             P+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PETNPF +GAIRVYLREVRECQAKA
Sbjct:    84 PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query:   169 RGIPY 173
             RGIPY
Sbjct:   144 RGIPY 148

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124067 LSH9 "AT4G18610" [Arabidopsis thaliana (taxid:3702)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 106/128 (82%), Positives = 113/128 (88%)

Query:    47 PLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFF 106
             PLSRYESQKRRDWNTF QYLK+Q PP+ +SQ    HVL FLRYLDQFGKTKVH   CVFF
Sbjct:    34 PLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFF 93

Query:   107 GQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGG-SPETNPFGNGAIRVYLREVRECQ 165
             GQPDPP PCTCPL+QAWGSLDALIGRLRAAYEEHGG SP+TNPF NG+IRV+LREVRE Q
Sbjct:    94 GQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQ 153

Query:   166 AKARGIPY 173
             AKARGIPY
Sbjct:   154 AKARGIPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2082170 LSH4 "LIGHT SENSITIVE HYPOCOTYLS 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 103/126 (81%), Positives = 114/126 (90%)

Query:    48 LSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFG 107
             LSRYE+QKRRDWNTFGQYL+N RPP+SLS+CS  HVL+FLRYLDQFGKTKVH H C FFG
Sbjct:    46 LSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFG 105

Query:   108 QPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAK 167
              P+PPAPC CPLRQAWGSLDALIGRLRAA+EE+GGSPETNPFG  A+R+YLREVR+ QAK
Sbjct:   106 HPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAK 165

Query:   168 ARGIPY 173
             ARGI Y
Sbjct:   166 ARGISY 171

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:505006228 LSH7 "AT1G78815" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 102/153 (66%), Positives = 120/153 (78%)

Query:    48 LSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFG 107
             LSRYESQKRRDWNTF QYL+NQ+PPV +SQC  NH+LDFL+YLDQFGKTKVH+HGCVFFG
Sbjct:    38 LSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFG 97

Query:   108 QPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAK 167
             Q +P   C CPL+QAWGSLDALIGRLRAA+EE+GG PE NPF  G IRV+LREVR+ QAK
Sbjct:    98 QVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAK 157

Query:   168 ARGIPYXXXXXXXYHQ-IKSNNDEPAKSSRQST 199
             ARG+PY           +KS++ E   +   S+
Sbjct:   158 ARGVPYKKRKKRKKRNPMKSHDGEDGTTGTSSS 190

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009691 "cytokinin biosynthetic process" evidence=RCA

TAIR|locus:2055897 LSH3 "AT2G31160" [Arabidopsis thaliana (taxid:3702)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 97/125 (77%), Positives = 112/125 (89%)

Query:    49 SRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQ 108
             SRYE+QKRRDWNTFGQYL+N RPP+SLS+CS  HVL+FLRYLDQFGKTKVH + C F+G 
Sbjct:    53 SRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTNICHFYGH 112

Query:   109 PDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAKA 168
             P+PPAPC CPLRQAWGSLDALIGRLRAA+EE+GG PETNPFG  A+R+YLREVR+ Q+KA
Sbjct:   113 PNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKA 172

Query:   169 RGIPY 173
             RG+ Y
Sbjct:   173 RGVSY 177

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2147494 LSH1 "AT5G28490" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 100/149 (67%), Positives = 114/149 (76%)

Query:    49 SRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQ 108
             SRYE+QKRRDWNTF QYL+N RPP+SL  CS  HVL+FLRYLDQFGKTKVH   C FFG 
Sbjct:    24 SRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKVHHQNCAFFGL 83

Query:   109 PDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAKA 168
             P+PPAPC CPLRQAWGSLDALIGRLRAAYEE+GG PE NPFG+ A+R++LREVR+ QAKA
Sbjct:    84 PNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFLREVRDFQAKA 143

Query:   169 RGIPYXXXXXXXYHQIKSNNDEPAKSSRQ 197
             RG+ Y         Q K     P +  +Q
Sbjct:   144 RGVSYEKKRKRVNRQ-KPQTQPPLQLQQQ 171

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0009637 "response to blue light" evidence=IGI

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010114 "response to red light" evidence=IGI

GO:0010218 "response to far red light" evidence=IGI

TAIR|locus:2100850 LSH2 "AT3G04510" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 94/125 (75%), Positives = 110/125 (88%)

Query:    49 SRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQ 108
             SRYE+QKRRDWNTF QYL+N  PP+SL+ CS  HVLDFLRYLDQFGKTKVH   C FFG 
Sbjct:    32 SRYENQKRRDWNTFCQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGL 91

Query:   109 PDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAKA 168
             P+PPAPC CPLRQAWGSLDALIGRLRAAYEE+GG+PET+PFG+ ++R++LREVR+ QAK+
Sbjct:    92 PNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKS 151

Query:   169 RGIPY 173
             RG+ Y
Sbjct:   152 RGVSY 156

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2007382 LSH6 "AT1G07090" [Arabidopsis thaliana (taxid:3702)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 99/150 (66%), Positives = 119/150 (79%)

Query:    49 SRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQ 108
             SRYESQKRRDWNTF QYLKN +PP++LS+CS  HV++FL+YLDQFGKTKVH+  C +FG 
Sbjct:    30 SRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYFGH 89

Query:   109 PDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAKA 168
               PP+PC+CPL+QAWGSLDALIGRLRAAYEE+GG P++NPF   A+R+YLREVRE QAKA
Sbjct:    90 QQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKA 149

Query:   169 RGIPYXXXXXXXYHQIKSNNDEPAKSSRQS 198
             RGIPY          + +   + A SSRQS
Sbjct:   150 RGIPYEKKKRKRPPTVTTVRVDVA-SSRQS 178

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171263 LSH5 "AT5G58500" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
 Identities = 94/126 (74%), Positives = 110/126 (87%)

Query:    49 SRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQ 108
             SRYESQKRRDWNTF QYL+N +PP++LS+CS  HVL+FL+YLDQFGKTKVH   C FFGQ
Sbjct:    18 SRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKYLDQFGKTKVHATACPFFGQ 77

Query:   109 PDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGS-PETNPFGNGAIRVYLREVRECQAK 167
             P+PP+ CTCPL+QAWGSLDALIGRLRAA+EE GG  PE+NPF   A+R+YL+EVR+ QAK
Sbjct:    78 PNPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNPFAAKAVRIYLKEVRQTQAK 137

Query:   168 ARGIPY 173
             ARGIPY
Sbjct:   138 ARGIPY 143

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015591 LSH8 "AT1G16910" [Arabidopsis thaliana (taxid:3702)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 89/126 (70%), Positives = 101/126 (80%)

Query:    48 LSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFG 107
             LSRYESQK RDWNTF QYL  + PPV + +C  NH+LDFL+  DQFGKTKVH+ GCVFFG
Sbjct:    21 LSRYESQKSRDWNTFCQYLMTKMPPVHVWECESNHILDFLQSRDQFGKTKVHIQGCVFFG 80

Query:   108 QPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVRECQAK 167
             Q +PP  C CPL+QAWGSLDALIGRLRAAYEE+GG  E NPF  G IR++LREVR  QAK
Sbjct:    81 QKEPPGECNCPLKQAWGSLDALIGRLRAAYEENGGLTEKNPFARGGIRIFLREVRGSQAK 140

Query:   168 ARGIPY 173
             ARG+ Y
Sbjct:   141 ARGVLY 146


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      199       150   0.00087  104 3  11 22  0.47    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  163 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.27u 0.13s 15.40t   Elapsed:  00:00:01
  Total cpu time:  15.27u 0.13s 15.40t   Elapsed:  00:00:01
  Start:  Fri May 10 05:33:56 2013   End:  Fri May 10 05:33:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0071006401 SubName- Full=Putative uncharacterized protein; (178 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
pfam04852	133	pfam04852, DUF640, Protein of unknown function (DU	3e-75

>gnl|CDD|191112 pfam04852, DUF640, Protein of unknown function (DUF640)

 Score =  222 bits (566), Expect = 3e-75
 Identities = 95/133 (71%), Positives = 105/133 (78%)

Query: 32  DRHHQPQPQPQPHPVPLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLD 91
                 +   +  P  LSRYESQKRRDWNTF QYL+NQRPP++LS+CS NHVLDFLRYLD
Sbjct: 1   SERLTSECSSRSPPPALSRYESQKRRDWNTFCQYLRNQRPPLNLSKCSGNHVLDFLRYLD 60

Query: 92  QFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGN 151
           QFGKTKVH   C FFG P PPAPC CPLRQAWGSLDALIGRLRAA+EEHGG PE NPF  
Sbjct: 61  QFGKTKVHGQACGFFGHPSPPAPCPCPLRQAWGSLDALIGRLRAAFEEHGGHPEENPFAA 120

Query: 152 GAIRVYLREVREC 164
            A+R+YLREVR+ 
Sbjct: 121 RAVRLYLREVRDS 133

This family represents a conserved region found in plant proteins including Resistance protein-like protein. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
PF04852	132	DUF640: Protein of unknown function (DUF640); Inte	100.0
PF08821	107	CGGC: CGGC domain; InterPro: IPR014925 Proteins in	89.89
PF02899	84	Phage_int_SAM_1: Phage integrase, N-terminal SAM-l	86.3
cd00798	284	INT_XerDC XerD and XerC integrases, DNA breaking-r	85.17

>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT)

Probab=100.00  E-value=3.3e-76  Score=472.10  Aligned_cols=127  Identities=74%  Similarity=1.335  Sum_probs=121.4

Q ss_pred             CCCCCCCCCCCChhhhhhhhhhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCC
Q 029090           38 QPQPQPHPVPLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTC  117 (199)
Q Consensus        38 ~~~~~~~~~~~SrYesQKrrdWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~C  117 (199)
                      +....++++++||||+|||||||||+|||+||+||++|++|+++|||+||+|+|||||||||.++|+|||+|+||+||+|
T Consensus         6 ~~~~~~~~~~~SrYesQKrrdwntf~qyL~n~rPP~~L~~csg~hVl~FL~~~d~~GkTkVh~~~C~~~g~~~~p~~C~C   85 (132)
T PF04852_consen    6 ETSSRSPQPAPSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGNHVLEFLRYLDQFGKTKVHGQGCPFFGHPSPPAPCPC   85 (132)
T ss_pred             cCCCCCCCCCCcccchhhhHHHHHHHHHHHccCCCcchhhcChHHHHHHHHHHhccCCeeecCCCCCCCCCCCCCCCCCC
Confidence            34444555688999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcchhHHHHHHHHHHHHHhCCCCCCCCCCcchhHHHHHHHHHH
Q 029090          118 PLRQAWGSLDALIGRLRAAYEEHGGSPETNPFGNGAIRVYLREVREC  164 (199)
Q Consensus       118 PlRQAwGSLDALIGRLRAafeE~Gg~pE~NPF~araVRlYLReVRd~  164 (199)
                      |||||||||||||||||||||||||+||+|||+++|||+|||||||+
T Consensus        86 PlrqAwGSlDalIGrLraafee~Gg~pe~NPf~~~~vr~yLr~vr~~  132 (132)
T PF04852_consen   86 PLRQAWGSLDALIGRLRAAFEEHGGHPEANPFAARAVRLYLREVRDS  132 (132)
T ss_pred             cHHHHhccHHHHHHHHHHHHHHhCCCCCCCchhhHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999985

>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region

Probab=89.89  E-value=0.39  Score=37.28  Aligned_cols=67  Identities=21%  Similarity=0.510  Sum_probs=49.4

Q ss_pred             HHHHHHHhcCCCcccCCCC---ccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHH
Q 029090           61 TFGQYLKNQRPPVSLSQCS---CNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAY  137 (199)
Q Consensus        61 tf~qyL~n~rPPlsLs~cs---~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRAaf  137 (199)
                      .|.+|=.+..--+.+.+|.   +..|+..+..+-..|-..||..+|.+.+.+.+    +||.      +|.|+-.|+++|
T Consensus        29 ~F~~y~~~~~elvgf~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~----~CP~------~~~~~~~I~~~~   98 (107)
T PF08821_consen   29 AFARYDDEDVELVGFFTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG----PCPH------IDEIKKIIEEKF   98 (107)
T ss_pred             ccccCCCCCeEEEEEeeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC----CCCC------HHHHHHHHHHHh
Confidence            3444443223334455655   57888888888899999999999999887654    6665      899999999887

The region has many conserved cysteines and histidines suggestive of a zinc binding function.

>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]

Probab=86.30  E-value=0.51  Score=31.79  Aligned_cols=40  Identities=30%  Similarity=0.483  Sum_probs=31.1

Q ss_pred             hhhhhhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCC
Q 029090           54 QKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFG   94 (199)
Q Consensus        54 QKrrdWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfG   94 (199)
                      .-+++++.|.+||.+ ....++..++..||.+||.++-+.|
T Consensus        21 ~Y~~~l~~f~~~~~~-~~~~~~~~i~~~~v~~f~~~~~~~~   60 (84)
T PF02899_consen   21 SYRRDLRRFIRWLEE-HGIIDWEDITEEDVRDFLEYLAKEG   60 (84)
T ss_dssp             HHHHHHHHHHHHHHH-TTS-CGGG--HHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhhh-hhhhhhhhhhhHHHHHHHHHHHccC
Confidence            346789999999999 6677778899999999999977655

The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.

>cd00798 INT_XerDC XerD and XerC integrases, DNA breaking-rejoining enzymes, N- and C-terminal domains

Probab=85.17  E-value=1.6  Score=33.65  Aligned_cols=69  Identities=22%  Similarity=0.259  Sum_probs=48.1

Q ss_pred             hhhhhhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHH
Q 029090           54 QKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRL  133 (199)
Q Consensus        54 QKrrdWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRL  133 (199)
                      +-+..|+.|.+|+.....+. +..-+..||.+|+.++...|                          ....++...++-|
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~i~~~~~~~~~~~--------------------------~~~~t~~~~~~~l   73 (284)
T cd00798          21 AYRRDLERFLEFLEERGILF-PADVTPDDIRRFLAELKDQG--------------------------LSARSIARKLSAL   73 (284)
T ss_pred             HHHHHHHHHHHHHHHcCCCc-hhhCCHHHHHHHHHHhhhcC--------------------------CCHHHHHHHHHHH
Confidence            34567899999998754333 56677899999999876543                          2335778888888


Q ss_pred             HHHHHHhC--CCCCCCCC
Q 029090          134 RAAYEEHG--GSPETNPF  149 (199)
Q Consensus       134 RAafeE~G--g~pE~NPF  149 (199)
                      +++|.-..  +..+.||+
T Consensus        74 ~~~~~~~~~~~~~~~~p~   91 (284)
T cd00798          74 RSFFKFLLREGLILANPA   91 (284)
T ss_pred             HHHHHHHHHcCCccCChh
Confidence            88887432  34556887

XerD-like integrases are involved in the site-specific integration and excision of lysogenic bacteriophage genomes, transposition of conjugative transposons, termination of chromosomal replication, and stable plasmid inheritance. They share the same fold in their catalytic domain containing six conserved active site residues and the overall reaction mechanism with the DNA breaking-rejoining enzyme superfamily. In Escherichia coli, the Xer site-specific recombination system acts to convert dimeric chromosomes, which are formed by homologous recombination to monomers. Two related recombinases, XerC and XerD, bind cooperatively to a recombination site present in the E. coli chromosome. Each recombinase catalyzes the exchange of one pair of DNA strand in a reaction that proceeds through a Holliday junction intermediate. These enzymes can bridge two different and well-separated DNA sequen

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 39/124 (31%)

Query: 32  DRHHQPQPQPQPHPVPLSRYESQKRRDWNTFGQYLKNQRPPVSLSQCSCNHV-------- 83
           +   + + +   H   +  Y   K  D +           P  L Q   +H+        
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDL--------IPPYLDQYFYSHIGHHLKNIE 485

Query: 84  ----LDFLR--YLD-QFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 136
               +   R  +LD +F + K+                         GS+   + +L+  
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDS----------TAWNAS-----GSILNTLQQLK-F 529

Query: 137 YEEH 140
           Y+ +
Sbjct: 530 YKPY 533

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
1xo0_A	324	Recombinase CRE; CRE recombinase, holliday junctio	89.32
1a0p_A	290	Site-specific recombinase XERD; DNA binding, DNA r	81.77
3nrw_A	117	Phage integrase/site-specific recombinase; alpha-h	80.29

>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...

Probab=89.32  E-value=0.23  Score=37.92  Aligned_cols=69  Identities=17%  Similarity=0.189  Sum_probs=50.9

Q ss_pred             hhhhhhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHH
Q 029090           54 QKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRL  133 (199)
Q Consensus        54 QKrrdWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRL  133 (199)
                      .-+.+|+.|..|+.+..  +.+...+..||.+|+.++-..|                          .+..++...+.-|
T Consensus        25 ~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l   76 (324)
T 1xo0_A           25 MLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQL   76 (324)
T ss_dssp             HHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHHH
Confidence            34578899999998763  3456678899999999864321                          3557889999999


Q ss_pred             HHHHHHhCCC-CCCCCCC
Q 029090          134 RAAYEEHGGS-PETNPFG  150 (199)
Q Consensus       134 RAafeE~Gg~-pE~NPF~  150 (199)
                      ++.|+-.+.. +..||+.
T Consensus        77 ~~~~~~~~~~~~~~np~~   94 (324)
T 1xo0_A           77 NMLHRRSGLPRPSDSNAV   94 (324)
T ss_dssp             HHHHHHHTSCCGGGSHHH
T ss_pred             HHHHHHcCCCCCCcCHHH
Confidence            9999987633 3567764

>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1

Probab=81.77  E-value=2.7  Score=31.59  Aligned_cols=70  Identities=16%  Similarity=0.165  Sum_probs=48.4

Q ss_pred             hhhhhhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHH
Q 029090           54 QKRRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRL  133 (199)
Q Consensus        54 QKrrdWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRL  133 (199)
                      .-+..++.|..|+...  .+.+..-+..||.+|+.++-..                          ..+..++...+.-|
T Consensus        26 ~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~l   77 (290)
T 1a0p_A           26 AYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSAV   77 (290)
T ss_dssp             HHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHHH
Confidence            3456788899999887  3467777899999999885321                          12456788899999


Q ss_pred             HHHHHHhC--CCCCCCCCCc
Q 029090          134 RAAYEEHG--GSPETNPFGN  151 (199)
Q Consensus       134 RAafeE~G--g~pE~NPF~a  151 (199)
                      +++|+..-  +..+.|||..
T Consensus        78 ~~~~~~~~~~~~i~~np~~~   97 (290)
T 1a0p_A           78 RRLFQYLYREKFREDDPSAH   97 (290)
T ss_dssp             HHHHHHHHHTTSSSSCTTSC
T ss_pred             HHHHHHHHhCCCccCChhhh
Confidence            99988542  4456899853

>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}

Probab=80.29  E-value=2.5  Score=29.09  Aligned_cols=68  Identities=7%  Similarity=0.038  Sum_probs=48.0

Q ss_pred             hhhhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 029090           56 RRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRA  135 (199)
Q Consensus        56 rrdWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRA  135 (199)
                      +++++.|..||.... -..+...+..||.+|+.|+-..                          ..+..|+-..+.-||+
T Consensus        33 ~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~--------------------------~~s~~Ti~~~ls~lr~   85 (117)
T 3nrw_A           33 RYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGS--------------------------DVSPATLNGEMQTLKN   85 (117)
T ss_dssp             HHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTS--------------------------SCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhC--------------------------CCCHHHHHHHHHHHHH
Confidence            568888999997632 1255677889999999886321                          1345688888888898


Q ss_pred             HHHHh--CCCCCCCCCC
Q 029090          136 AYEEH--GGSPETNPFG  150 (199)
Q Consensus       136 afeE~--Gg~pE~NPF~  150 (199)
                      .|.-.  -|.-+.||+.
T Consensus        86 f~~~l~~~g~i~~nP~~  102 (117)
T 3nrw_A           86 WLEYLARIDVVDEDLPE  102 (117)
T ss_dssp             HHHHHHHTTSSCTTSGG
T ss_pred             HHHHHHHcCCcccCHHH
Confidence            88743  2456689975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1f44a1	110	Cre recombinase {Bacteriophage P1 [TaxId: 10678]}	97.47

>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}

class: All alpha proteins
fold: SAM domain-like
superfamily: lambda integrase-like, N-terminal domain
family: lambda integrase-like, N-terminal domain
domain: Cre recombinase
species: Bacteriophage P1 [TaxId: 10678]

Probab=97.47  E-value=0.00012  Score=51.70  Aligned_cols=81  Identities=19%  Similarity=0.283  Sum_probs=65.6

Q ss_pred             hhhhhHHHHHHHhcCCCcccCCCCccchhhhhheeccCCceeeecccccCcCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 029090           56 RRDWNTFGQYLKNQRPPVSLSQCSCNHVLDFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRA  135 (199)
Q Consensus        56 rrdWntf~qyL~n~rPPlsLs~cs~~hVleFLrylDqfGkTkVH~~~C~ffg~p~ppapC~CPlRQAwGSLDALIGRLRA  135 (199)
                      ++||+.|.+|+.++.-  ++..++..+|.+||.++-.-|                          .+..|+.--|-=||.
T Consensus        27 ~~dl~~f~~w~~~~~~--~~l~~~~~~v~~yl~~l~~~g--------------------------~s~sTi~R~lsair~   78 (110)
T d1f44a1          27 LSVCRSWAAWCKLNNR--KWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQLNM   78 (110)
T ss_dssp             HHHHHHHHHHHHHTTC--CTTTTCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcc--cccchhhhHHHHHHHHHHhcC--------------------------CCccHHHHHHHHHHH
Confidence            5799999999998863  455689999999999874322                          455689999999999


Q ss_pred             HHHHhCCCCCCCCCCcchhHHHHHHHHHHHHh
Q 029090          136 AYEEHGGSPETNPFGNGAIRVYLREVRECQAK  167 (199)
Q Consensus       136 afeE~Gg~pE~NPF~araVRlYLReVRd~QAk  167 (199)
                      .|...|-.   ||+.+..|++.|+-++-..+.
T Consensus        79 f~r~~g~~---~p~~~~~V~~~l~~i~R~~~~  107 (110)
T d1f44a1          79 LHRRSGLP---RPSDSNAVSLVMRRIRKENVD  107 (110)
T ss_dssp             HHHHTTCC---CGGGSHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCC---CCcCCHHHHHHHHHccccccC
Confidence            99888753   799999999999988876654