Citrus Sinensis ID: 029115

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED
Secondary Structure (PSIPRED)
ccccccccEEEEEcccccccccccEEEEEccccccccccccEEEEEcccccccccccccHHHHHHHHHcccccccEEEEEEEcccEEEEEEEccccccccccEEEEEEcccHHccccHHHHHHHHHHHHHHcccccccccccccEEEEcccccccHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEcccccccccccEEEEEcccHHccccccHEEEEEcccccccccccccHHHHHHHHcccccccEEEEEEEccccEEEEEEEEcccccccccEEEEEEccHHHccccHHHHHHHHHHHHHHccccHHcEcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mfelgkapvywktmnglppmsgeklkifynpyakkllpnedfgigfnggfnqpfmcggepramlrknrgqndspfytiqicvPKHAINLIFSFtngvewdgpyrikflvprawrnkpmdffnkGLADqlskdgacekaifpdtdvVVDRCVLIGNlaaeggdrcdlnlvpgcmdpssplydplanvddgscpldsdied
Flexible Loop (DISEMBL)
mfelgkapvywKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFtngvewdgpyRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAaeggdrcdlnLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED
Low Complexity Region (SEG)
MFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED
Disordered region (IsUnstruct)
*******PVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPR***********SPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMD*************************
Disordered Region (DISOPRED)
****GKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEP*********QNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSC*L******
Disordered Region (DISEMBL)
MFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED
Disordered Region (DISPRO)
*FELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPL******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFFNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYDPLANVDDGSCPLDSDIED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
225442943	282	PREDICTED: uncharacterized protein LOC10	1.0	0.705	0.783	4e-95
449509289	284	PREDICTED: LOW QUALITY PROTEIN: uncharac	1.0	0.700	0.768	8e-92
449436138	284	PREDICTED: uncharacterized protein LOC10	1.0	0.700	0.768	1e-91
255553199	279	conserved hypothetical protein [Ricinus	0.974	0.695	0.768	4e-91
224054336	286	predicted protein [Populus trichocarpa]	0.984	0.685	0.770	1e-90
357468177	280	hypothetical protein MTR_4g010140 [Medic	0.984	0.7	0.75	3e-89
118486567	197	unknown [Populus trichocarpa]	0.984	0.994	0.770	8e-89
114149950	277	chloroplast post-illumination chlorophyl	0.994	0.714	0.727	3e-88
359807532	277	uncharacterized protein LOC100790141 [Gl	0.994	0.714	0.732	1e-87
388501902	276	unknown [Lotus japonicus]	0.979	0.706	0.738	1e-86

>gi|225442943|ref|XP_002266165.1| PREDICTED: uncharacterized protein LOC100264489 isoform 1 [Vitis vinifera] gi|225442945|ref|XP_002266207.1| PREDICTED: uncharacterized protein LOC100264489 isoform 2 [Vitis vinifera] gi|297743467|emb|CBI36334.3| unnamed protein product [Vitis vinifera]

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 156/199 (78%), Positives = 182/199 (91%)

Query: 1   MFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEP 60
           MFELG+APVYWKTMNGLPP SGEKLK+FYNP A KL+PNEDFGIGFNGGFNQP MCGGEP
Sbjct: 84  MFELGRAPVYWKTMNGLPPSSGEKLKLFYNPVASKLVPNEDFGIGFNGGFNQPIMCGGEP 143

Query: 61  RAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDF 120
           RAML+K RG+ D P YTIQIC+PKHA+NLIFSFTNG EWDGPY+++F VP+AWRNKP++F
Sbjct: 144 RAMLKKARGKADRPIYTIQICIPKHAVNLIFSFTNGTEWDGPYKLQFQVPKAWRNKPIEF 203

Query: 121 FNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLY 180
           FN+GLA++LSK+GAC+KAIFPDT++V+DRC LIGNL  EGGDRC+L+ V GC DPSSPLY
Sbjct: 204 FNQGLAEELSKEGACDKAIFPDTNIVIDRCALIGNLTLEGGDRCNLDFVIGCTDPSSPLY 263

Query: 181 DPLANVDDGSCPLDSDIED 199
           +PLANVDDGSCP++SD ED
Sbjct: 264 NPLANVDDGSCPIESDSED 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449509289|ref|XP_004163546.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101207565 [Cucumis sativus]

 Score =  341 bits (875), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 153/199 (76%), Positives = 178/199 (89%)

Query: 1   MFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEP 60
           +FELGKAPVYWKT+NGLPP +GEKLK+FYNP A  L PN+DFGI FNGGFNQP MCGGEP
Sbjct: 86  LFELGKAPVYWKTVNGLPPTAGEKLKLFYNPAATNLAPNDDFGIAFNGGFNQPIMCGGEP 145

Query: 61  RAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDF 120
           RAMLRK+RG+ D P YTIQIC+PKHAINLIFSFTNG +WDGPYR++F VP+AW+NKP+DF
Sbjct: 146 RAMLRKDRGKADGPIYTIQICIPKHAINLIFSFTNGTDWDGPYRLQFXVPKAWQNKPIDF 205

Query: 121 FNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLY 180
           FN+GLA++LSK+GAC++AIFPDT VVV RC +IGNL  EGGDRCDLNLV GC DPSS L+
Sbjct: 206 FNQGLAEELSKEGACDRAIFPDTSVVVTRCAMIGNLTVEGGDRCDLNLVLGCTDPSSHLF 265

Query: 181 DPLANVDDGSCPLDSDIED 199
           +PLANVDDGSCP+D+D ED
Sbjct: 266 NPLANVDDGSCPIDTDTED 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436138|ref|XP_004135851.1| PREDICTED: uncharacterized protein LOC101207565 [Cucumis sativus]

 Score =  341 bits (874), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 153/199 (76%), Positives = 178/199 (89%)

Query: 1   MFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEP 60
           +FELGKAPVYWKT+NGLPP +GEKLK+FYNP A  L PN+DFGI FNGGFNQP MCGGEP
Sbjct: 86  LFELGKAPVYWKTVNGLPPTAGEKLKLFYNPAATNLAPNDDFGIAFNGGFNQPIMCGGEP 145

Query: 61  RAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDF 120
           RAMLRK+RG+ D P YTIQIC+PKHAINLIFSFTNG +WDGPYR++F VP+AW+NKP+DF
Sbjct: 146 RAMLRKDRGKADGPIYTIQICIPKHAINLIFSFTNGTDWDGPYRLQFQVPKAWQNKPIDF 205

Query: 121 FNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLY 180
           FN+GLA++LSK+GAC++AIFPDT VVV RC +IGNL  EGGDRCDLNLV GC DPSS L+
Sbjct: 206 FNQGLAEELSKEGACDRAIFPDTSVVVTRCAMIGNLTVEGGDRCDLNLVLGCTDPSSHLF 265

Query: 181 DPLANVDDGSCPLDSDIED 199
           +PLANVDDGSCP+D+D ED
Sbjct: 266 NPLANVDDGSCPIDTDTED 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553199|ref|XP_002517642.1| conserved hypothetical protein [Ricinus communis] gi|223543274|gb|EEF44806.1| conserved hypothetical protein [Ricinus communis]

 Score =  339 bits (869), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 149/194 (76%), Positives = 179/194 (92%)

Query: 1   MFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEP 60
           MFELG+APVYWKTMNGLPP SGEKLK+FYNP AKKL PN++FGIGFNGGFNQP MCGGEP
Sbjct: 83  MFELGRAPVYWKTMNGLPPASGEKLKLFYNPAAKKLNPNKEFGIGFNGGFNQPIMCGGEP 142

Query: 61  RAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDF 120
           RAML+K RG+ D P YTIQICVPKHA+NLIFSFTNGVEWDGPYR++F VP+ W+N+P++F
Sbjct: 143 RAMLKKTRGKADPPIYTIQICVPKHAVNLIFSFTNGVEWDGPYRLQFQVPKGWQNRPIEF 202

Query: 121 FNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLY 180
           FN+GLA++LSK+GAC++AIFPDT++V+DRC +IGNL+ EGGDRC+L+LVPGCMD +S LY
Sbjct: 203 FNEGLAEELSKEGACDRAIFPDTNIVIDRCAMIGNLSIEGGDRCNLDLVPGCMDTASHLY 262

Query: 181 DPLANVDDGSCPLD 194
           +PLANVDDGSC +D
Sbjct: 263 NPLANVDDGSCAID 276

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054336|ref|XP_002298209.1| predicted protein [Populus trichocarpa] gi|222845467|gb|EEE83014.1| predicted protein [Populus trichocarpa]

 Score =  337 bits (865), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 151/196 (77%), Positives = 176/196 (89%)

Query: 1   MFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEP 60
           MFELG APV+WKTMNGLPP SGE LK+FYNP A KL+PNE+FGI FNGGFNQP MCGGEP
Sbjct: 90  MFELGSAPVFWKTMNGLPPSSGENLKLFYNPAANKLVPNEEFGIAFNGGFNQPIMCGGEP 149

Query: 61  RAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDF 120
           RAMLRK RG+ D PFYTIQICVPKHA+NLIFSFTNGV+WDGPYR++F V   WRNKP++F
Sbjct: 150 RAMLRKVRGKADPPFYTIQICVPKHAVNLIFSFTNGVDWDGPYRLQFQVHNGWRNKPIEF 209

Query: 121 FNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLY 180
           FN+GLA++LSK+GACEKAIFPDTD++V RC +IGNL+ EGGDRCDL+LV GCMDPSS LY
Sbjct: 210 FNEGLAEELSKEGACEKAIFPDTDIIVTRCAMIGNLSIEGGDRCDLDLVSGCMDPSSHLY 269

Query: 181 DPLANVDDGSCPLDSD 196
           +PLANVDDG+CP++ +
Sbjct: 270 NPLANVDDGTCPIEME 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357468177|ref|XP_003604373.1| hypothetical protein MTR_4g010140 [Medicago truncatula] gi|217073576|gb|ACJ85148.1| unknown [Medicago truncatula] gi|355505428|gb|AES86570.1| hypothetical protein MTR_4g010140 [Medicago truncatula] gi|388504280|gb|AFK40206.1| unknown [Medicago truncatula]

 Score =  333 bits (853), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 147/196 (75%), Positives = 177/196 (90%)

Query: 1   MFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEP 60
           MFELGKA VYWKT NG+ P SGEKLK+FYNP A +L PNE+FGI FNGGFNQP MCGGEP
Sbjct: 80  MFELGKAAVYWKTTNGVAPTSGEKLKLFYNPAAAQLAPNEEFGIAFNGGFNQPIMCGGEP 139

Query: 61  RAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDF 120
           RAMLRK+RG+ DSP Y+IQICVPKHA+NLIFSFTNGV+WDGPYR++F VP+  +NKP++F
Sbjct: 140 RAMLRKDRGKADSPIYSIQICVPKHALNLIFSFTNGVDWDGPYRLQFQVPKPLQNKPIEF 199

Query: 121 FNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLY 180
           FN+GLA++LSK+GACE+AIFPDT  V+++C +IGNL+ EGGDRC+LNLVPGC+DPSSPLY
Sbjct: 200 FNEGLAEELSKEGACEQAIFPDTTAVIEKCAMIGNLSKEGGDRCELNLVPGCIDPSSPLY 259

Query: 181 DPLANVDDGSCPLDSD 196
           DP+ANVDDGSCP++ D
Sbjct: 260 DPMANVDDGSCPIEVD 275

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486567|gb|ABK95122.1| unknown [Populus trichocarpa]

 Score =  331 bits (849), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 151/196 (77%), Positives = 176/196 (89%)

Query: 1   MFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEP 60
           MFELG APV+WKTMNGLPP SGE LK+FYNP A KL+PNE+FGI FNGGFNQP MCGGEP
Sbjct: 1   MFELGSAPVFWKTMNGLPPSSGENLKLFYNPAANKLVPNEEFGIAFNGGFNQPIMCGGEP 60

Query: 61  RAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDF 120
           RAMLRK RG+ D PFYTIQICVPKHA+NLIFSFTNGV+WDGPYR++F V   WRNKP++F
Sbjct: 61  RAMLRKVRGKADPPFYTIQICVPKHAVNLIFSFTNGVDWDGPYRLQFQVHNGWRNKPIEF 120

Query: 121 FNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLY 180
           FN+GLA++LSK+GACEKAIFPDTD++V RC +IGNL+ EGGDRCDL+LV GCMDPSS LY
Sbjct: 121 FNEGLAEELSKEGACEKAIFPDTDIIVTRCAMIGNLSIEGGDRCDLDLVSGCMDPSSHLY 180

Query: 181 DPLANVDDGSCPLDSD 196
           +PLANVDDG+CP++ +
Sbjct: 181 NPLANVDDGTCPIEME 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|114149950|gb|ABI51594.1| chloroplast post-illumination chlorophyll fluorescence increase protein [Nicotiana tabacum]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 144/198 (72%), Positives = 174/198 (87%)

Query: 2   FELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPR 61
           F+LG+APVYWKTMNGLPP +GE+LK+FYNP A  ++PNEDFGI FNGGFNQP MCGGEPR
Sbjct: 80  FDLGRAPVYWKTMNGLPPTAGERLKLFYNPAANNMVPNEDFGIAFNGGFNQPIMCGGEPR 139

Query: 62  AMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFF 121
           AML K RG+ D P YTIQIC+PKHA++LIFSFTNG EWDGPYR++F VP AWRNKP +FF
Sbjct: 140 AMLMKTRGKADPPIYTIQICIPKHALSLIFSFTNGTEWDGPYRLQFQVPNAWRNKPTEFF 199

Query: 122 NKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYD 181
            +GLA +LS++GAC+KAIFPDT++V+ RC ++GNL+ EGGDRCDL++VPGC+DPSSP ++
Sbjct: 200 TEGLAGELSQEGACDKAIFPDTNIVITRCAMVGNLSVEGGDRCDLDIVPGCIDPSSPYFN 259

Query: 182 PLANVDDGSCPLDSDIED 199
           PLANVDDGSCP  SD ED
Sbjct: 260 PLANVDDGSCPPYSDAED 277

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807532|ref|NP_001240893.1| uncharacterized protein LOC100790141 [Glycine max] gi|255639039|gb|ACU19820.1| unknown [Glycine max]

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 145/198 (73%), Positives = 175/198 (88%)

Query: 2   FELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPR 61
           FE+G+A VYWKTMNGLPP SGEKLK+FYNP A +L+PNE+FGI FNGGFNQP MCGGEPR
Sbjct: 78  FEIGRAAVYWKTMNGLPPSSGEKLKLFYNPAATQLVPNEEFGIAFNGGFNQPIMCGGEPR 137

Query: 62  AMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFF 121
           AMLRK RG+ D+P Y+IQIC+PKHA+NLIFSFTNGV+WDGPYR++F VP+A +NKP+DFF
Sbjct: 138 AMLRKYRGKADAPIYSIQICIPKHALNLIFSFTNGVDWDGPYRLQFQVPKALQNKPIDFF 197

Query: 122 NKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYD 181
           NKGLA++LSK+GACE+AIFPDT+ V+ +C +IGNL+ EGGDRCDLN V GC DPSS LY+
Sbjct: 198 NKGLAEELSKEGACEQAIFPDTNKVITKCAMIGNLSKEGGDRCDLNFVVGCTDPSSHLYN 257

Query: 182 PLANVDDGSCPLDSDIED 199
           PLANVDDG+C ++ D E 
Sbjct: 258 PLANVDDGTCTIELDSES 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501902|gb|AFK39017.1| unknown [Lotus japonicus]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 144/195 (73%), Positives = 173/195 (88%)

Query: 2   FELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPR 61
           FELGKA VYWKTMNGLPP SGEKLK+FYNP + +L PNE+FGI FNGGFNQP MCGGEPR
Sbjct: 77  FELGKASVYWKTMNGLPPTSGEKLKLFYNPTSTQLAPNEEFGIAFNGGFNQPIMCGGEPR 136

Query: 62  AMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDFF 121
           AMLRK+RG+ D+P Y+IQICVPKHA+NLIFSFTNGV+WDGPYR++F VP+  +NKP++FF
Sbjct: 137 AMLRKDRGKADAPIYSIQICVPKHALNLIFSFTNGVDWDGPYRLQFQVPKVLQNKPIEFF 196

Query: 122 NKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLYD 181
           N+GLA++L K+GACE+AIFPD++ V+ +C ++GNL  EGGDRCDLNLV GC DPSS LY+
Sbjct: 197 NEGLAEELGKEGACEQAIFPDSNKVITKCAMLGNLTVEGGDRCDLNLVEGCTDPSSHLYN 256

Query: 182 PLANVDDGSCPLDSD 196
           PLANVDDG+CPLD D
Sbjct: 257 PLANVDDGTCPLDLD 271

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2093287	268	PIFI "AT3G15840" [Arabidopsis	1.0	0.742	0.715	1.9e-83

TAIR|locus:2093287 PIFI "AT3G15840" [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 143/200 (71%), Positives = 176/200 (88%)

Query:     1 MFELGKAPVYWKTMNGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEP 60
             MFE+G APVYWKTMNGLPP SGEKLK+FYNP A KL  NED+G+ FNGGFNQP MCGGEP
Sbjct:    69 MFEMGTAPVYWKTMNGLPPTSGEKLKLFYNPAASKLTLNEDYGVAFNGGFNQPIMCGGEP 128

Query:    61 RAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGVEWDGPYRIKFLVPRAWRNKPMDF 120
             RAML+K+RG+ DSP YT+QIC+PKHA+NLIFSFTNGV+WDGPYR++F VP+ W+NKP++F
Sbjct:   129 RAMLKKDRGKADSPIYTMQICIPKHAVNLIFSFTNGVDWDGPYRLQFQVPKRWQNKPIEF 188

Query:   121 FNKGLADQLSKDGACEKAIFPDTDVVVDRCVLIGNLAAEGGDRCDLNLVPGCMDPSSPLY 180
             FN+GLA++LS+DGACE+AIFPD++VV  RC +I NL  EGGDRC+L+LVPGCMD +S  +
Sbjct:   189 FNEGLANELSQDGACERAIFPDSNVVPTRCTMIANLTVEGGDRCNLDLVPGCMDTNSEHF 248

Query:   181 DPLANVDDGSCPLD-SDIED 199
             +P ANVDDGSCPL+ SD ++
Sbjct:   249 NPYANVDDGSCPLELSDSDE 268


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.143   0.468    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      199       199   0.00085  111 3  11 22  0.48    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  193 KB (2110 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.86u 0.12s 17.98t   Elapsed:  00:00:01
  Total cpu time:  17.86u 0.12s 17.98t   Elapsed:  00:00:01
  Start:  Fri May 10 06:27:15 2013   End:  Fri May 10 06:27:16 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010478 "chlororespiration" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_I0106	SubName- Full=Putative uncharacterized protein; (286 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.02080025	hypothetical protein (465 aa)				•			•		0.410

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
PF03423	87	CBM_25: Carbohydrate binding domain (family 25); I	97.75
PLN02316	1036	synthase/transferase	96.61
PLN02316	1036	synthase/transferase	96.28

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=97.75  E-value=3.7e-05  Score=56.17  Aligned_cols=75  Identities=25%  Similarity=0.539  Sum_probs=39.0

Q ss_pred             CCceEEEEcccccCCCCCCceeeeecCCCCCccccCCchhhhhhhhhCCCCCCceEEEeeeccceeeEEEEeecC-CCCC
Q 029115           22 GEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNG-VEWD  100 (199)
Q Consensus        22 Ge~L~lfyNp~a~~l~pn~~fGiaFNGgFNQPiMCGGePR~M~~k~RG~ad~piyti~I~vPkHa~~L~FSFTnG-~~WD  100 (199)
                      |+.++|||||..+.|.-..  -|=.-+|||. -. ....-.|.+... .....-++..|.||+.|..|.|.|+|| -.||
T Consensus         1 G~~vtVyYn~~~~~l~g~~--~v~~~~G~n~-W~-~~~~~~m~~~~~-~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wD   75 (87)
T PF03423_consen    1 GETVTVYYNPSLTALSGAP--NVHLHGGFNR-WT-HVPGFGMTKMCV-PDEGGWWKATVDVPEDAYVMDFVFNDGAGNWD   75 (87)
T ss_dssp             -SEEEEEE---E-SSS-S---EEEEEETTS--B--SSS-EE-EEESS----TTEEEEEEE--TTTSEEEEEEE-SSS-EE
T ss_pred             CCEEEEEEEeCCCCCCCCC--cEEEEecCCC-CC-cCCCCCcceeee-eecCCEEEEEEEEcCCceEEEEEEcCCCCcEe
Confidence            7899999999877775222  2444445542 11 111233433221 112678999999999999999999998 4788


Q ss_pred             C
Q 029115          101 G  101 (199)
Q Consensus       101 G  101 (199)
                      -
T Consensus        76 N   76 (87)
T PF03423_consen   76 N   76 (87)
T ss_dssp             S
T ss_pred             C
Confidence            5

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.

>PLN02316 synthase/transferase

Probab=96.61  E-value=0.0055  Score=62.33  Aligned_cols=93  Identities=20%  Similarity=0.352  Sum_probs=68.4

Q ss_pred             CCCCCCCCCceEEEEcccccCCCCCCceeeeecCCCCCccccCCchhhhhhhhhCCCCCCceEEEeeeccceeeEEEEee
Q 029115           15 NGLPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFT   94 (199)
Q Consensus        15 nGlpP~sGe~L~lfyNp~a~~l~pn~~fGiaFNGgFNQPiMCGGePR~M~~k~RG~ad~piyti~I~vPkHa~~L~FSFT   94 (199)
                      ....|-+|+.++|||||+.+.|.=..  -|=+-||||.=..-.+.+-.|.+-+++.-+  .+.-.|.||+-|..|-|-|+
T Consensus       321 ~P~~~~aG~~v~lyYN~~~~~L~~~~--~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~--ww~a~v~vP~~A~~mDfVFs  396 (1036)
T PLN02316        321 EPSEFKAGDTVKLYYNRSSGPLAHST--EIWIHGGYNNWIDGLSIVEKLVKSEEKDGD--WWYAEVVVPERALVLDWVFA  396 (1036)
T ss_pred             cCCCcCCCCEEEEEECCCCCCCCCCC--cEEEEEeEcCCCCCCcccceeecccCCCCC--EEEEEEecCCCceEEEEEEe
Confidence            35678999999999999999997443  467788888644333222224443433333  88999999999999999999


Q ss_pred             cC-----CCCCCceeEEEecCc
Q 029115           95 NG-----VEWDGPYRIKFLVPR  111 (199)
Q Consensus        95 nG-----~~WDGpY~l~f~vp~  111 (199)
                      ||     ..||--.+..|.+|=
T Consensus       397 dg~~~~~~~yDNn~~~Dyh~~v  418 (1036)
T PLN02316        397 DGPPGNARNYDNNGRQDFHAIV  418 (1036)
T ss_pred             cCCcccccccccCCCcceeeec
Confidence            99     699987777766654

>PLN02316 synthase/transferase

Probab=96.28  E-value=0.009  Score=60.83  Aligned_cols=122  Identities=21%  Similarity=0.337  Sum_probs=87.0

Q ss_pred             CCCCCCCceEEEEcccccCCCCCCceeeeecCCCCCccccCC--chhhhhhhhhCCCCCCceEEEeeeccceeeEEEEee
Q 029115           17 LPPMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGG--EPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFT   94 (199)
Q Consensus        17 lpP~sGe~L~lfyNp~a~~l~pn~~fGiaFNGgFNQPiMCGG--ePR~M~~k~RG~ad~piyti~I~vPkHa~~L~FSFT   94 (199)
                      +-|.+|+.++|||||+-+-|.-..+  |=|-||||.=.---|  .|-.|.+.+-|    .-+.-.|.||.-|..+-|-|.
T Consensus       485 ~~~~aG~~v~v~Yn~~~t~l~~~~e--v~~~g~~NrWth~~~~~~~~~m~~~~~g----~~~~a~v~vP~da~~mdfvFs  558 (1036)
T PLN02316        485 LEVQAGTTVTVLYNPANTVLNGKPE--VWFRGSFNRWTHRLGPLPPQKMVPADNG----SHLKATVKVPLDAYMMDFVFS  558 (1036)
T ss_pred             CCCCCCCEEEEEECCCCCcCCCCce--EEEEccccCcCCCCCCCCceeeeecCCC----ceEEEEEEccccceEEEEEEe
Confidence            4589999999999999888775544  779999997555445  58888887666    577899999999999999996


Q ss_pred             cCC---CCCCceeEEEecCcc---------------cccCCh------hhhhhhHHHhhhhcCcccccccCCcc
Q 029115           95 NGV---EWDGPYRIKFLVPRA---------------WRNKPM------DFFNKGLADQLSKDGACEKAIFPDTD  144 (199)
Q Consensus        95 nG~---~WDGpY~l~f~vp~~---------------~~nkP~------~fFnegLa~eLs~eGACd~AIfPda~  144 (199)
                      +|-   .||--....+-+|-.               +---|.      .=.--+|+++|++.|.-..-|-|.-.
T Consensus       559 ~~~~g~~yDn~~~~dyh~~v~g~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~  632 (1036)
T PLN02316        559 EKEEGGIFDNRNGLDYHIPVFGGIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD  632 (1036)
T ss_pred             cCCCCCCcCCCCCcCCcccccCCCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence            653   466544444433321               111121      22346789999999987777777543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
2c3v_A	102	Alpha-amylase G-6; carbohydrate-binding module, st	93.91
2laa_A	104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	91.6

>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*

Probab=93.91  E-value=0.06  Score=40.45  Aligned_cols=71  Identities=17%  Similarity=0.359  Sum_probs=44.9

Q ss_pred             CCCCCceEEEEcccccCCCCCCceeeeecCCCCCccccCCchhhhhhhhhCCCCCCceEEEeeeccceeeEEEEeecCC-
Q 029115           19 PMSGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPRAMLRKNRGQNDSPFYTIQICVPKHAINLIFSFTNGV-   97 (199)
Q Consensus        19 P~sGe~L~lfyNp~a~~l~pn~~fGiaFNGgFNQPiMCGGePR~M~~k~RG~ad~piyti~I~vPkHa~~L~FSFTnG~-   97 (199)
                      |..|+.++|||+..  -=.++-.||.+- |.+.+.=   |  -.|.+.    .|.=-++..|.+|. +..|+|-|+||. 
T Consensus         6 p~~g~~vTvyY~sg--~~~~ylHy~~~~-g~Wt~vp---g--v~M~~~----~~~Gw~~~TI~~~~-~~~l~~~F~dG~~   72 (102)
T 2c3v_A            6 SGDATDITIYYKTG--WTHPHIHYSLNQ-GAWTTLP---G--VPLTKS----EXEGXVKVTIEAEE-GSQLRAAFNNGSG   72 (102)
T ss_dssp             --CCCSEEEEEECC--CSSCEEEEEETT-CCBCCTT---C--EECEEC----SSTTEEEEEECCCT-TCEEEEEEECSSS
T ss_pred             CCCCCEEEEEEcCC--CCcEEEEEeCCC-CCcccCC---C--cCcccc----ccCCceEEEEecCC-CceEEEEEeCCCc
Confidence            44499999999933  344556666332 3455531   1  124332    24445688888884 689999999999 


Q ss_pred             CCCCc
Q 029115           98 EWDGP  102 (199)
Q Consensus        98 ~WDGp  102 (199)
                      .||-.
T Consensus        73 ~WDNN   77 (102)
T 2c3v_A           73 QWDNN   77 (102)
T ss_dssp             CEECG
T ss_pred             ccccC
Confidence            79954

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A

Probab=91.60  E-value=0.18  Score=37.91  Aligned_cols=67  Identities=22%  Similarity=0.401  Sum_probs=44.3

Q ss_pred             CCCceEEEEcccccCCCCCCceeeeecCCCCCccccCCchh-hhhhhhhCCCCCCce-EEEeeeccceeeEEEEeecCC-
Q 029115           21 SGEKLKIFYNPYAKKLLPNEDFGIGFNGGFNQPFMCGGEPR-AMLRKNRGQNDSPFY-TIQICVPKHAINLIFSFTNGV-   97 (199)
Q Consensus        21 sGe~L~lfyNp~a~~l~pn~~fGiaFNGgFNQPiMCGGePR-~M~~k~RG~ad~piy-ti~I~vPkHa~~L~FSFTnG~-   97 (199)
                      +|+.++|||++.+++.  .-.||.+- |..+.+      |- .|.+.     .-|-| +..|.||. +..|+|-|+||. 
T Consensus         3 ~g~~vtiyY~~g~~~v--ylHyg~~~-g~Wt~~------~~v~M~~~-----~~~gw~~~TI~l~~-g~~~~~~F~dG~~   67 (104)
T 2laa_A            3 TGNKVTIYYKKGFNSP--YIHYRPAG-GSWTAA------PGVKMQDA-----EISGYAKITVDIGS-ASQLEAAFNDGNN   67 (104)
T ss_dssp             CCCEEEEEEECSSSSC--EEEEEETT-SCCCSS------SCEECEEE-----TTTTEEEEEEECTT-CSCEEEEEECSSS
T ss_pred             CCCEEEEEEcCCCCcE--EEEEcCCC-CCCCcC------Cccccccc-----cCCCeEEEEEECCC-CCEEEEEEeCCCC
Confidence            5899999999755543  34555222 456653      21 23221     11567 69999996 789999999998 


Q ss_pred             CCCCc
Q 029115           98 EWDGP  102 (199)
Q Consensus        98 ~WDGp  102 (199)
                      .||-.
T Consensus        68 ~WDNn   72 (104)
T 2laa_A           68 NWDSN   72 (104)
T ss_dssp             CEEST
T ss_pred             cCcCC
Confidence            79965

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00