Citrus Sinensis ID: 029122

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MATKTRLVSVALLWALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccEEEEEEEEEEccccccHHHHHHHHHHHccccccccccccccccccccEEccccEEEcccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEcccccccccccEEEEEEEEcHHHHHHHHHcccccccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccEcccccEccccccEccEEEcccEEEEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEccccHHHcccccEEEEEEEcHHHHHHHHccccccccccccEEEEEEEEccc
Coil and Loop (DISEMBL)
MATKTRLVSVALLWALEGNSREELEKVTHKVYFDievggkpigrivmglfgkavPKTVENFRALCtgekgigksgkplyykgssfhriipsfmiqggdftlgdgrggesifgesfadenfklkhtgpgvlsmanagpdtngsqFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAegrqsgepkskvvisnsgemal
Flexible Loop (DISEMBL)
matktrlvSVALLWalegnsreelekVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALctgekgigksgkpLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIeaegrqsgepkskvvisnsgemal
Low Complexity Region (SEG)
MATKTRLVSVALLWALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQggdftlgdgrggESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL
Disordered region (IsUnstruct)
*****RLVSVALLWALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSM******TNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKI************************
Disordered Region (DISOPRED)
****TRLVSVALLW***************KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVR***************VVISNSGEMAL
Disordered Region (DISEMBL)
MATKTRLVSVALLWALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAE*********KVVISNSGEMAL
Disordered Region (DISPRO)
MATKTRLVSVALLWALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATKTRLVSVALLWALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q8LDP4	201	Peptidyl-prolyl cis-trans	yes	no	0.909	0.895	0.805	1e-83
Q9SP02	204	Peptidyl-prolyl cis-trans	no	no	0.904	0.877	0.815	8e-83
Q9TW32	197	Peptidyl-prolyl cis-trans	yes	no	0.949	0.954	0.677	6e-73
P52015	171	Peptidyl-prolyl cis-trans	yes	no	0.843	0.976	0.700	8e-68
P52011	173	Peptidyl-prolyl cis-trans	no	no	0.843	0.965	0.694	7e-66
Q39613	172	Peptidyl-prolyl cis-trans	N/A	no	0.848	0.976	0.672	2e-64
Q9SKQ0	174	Peptidyl-prolyl cis-trans	no	no	0.848	0.965	0.666	4e-64
P21568	171	Peptidyl-prolyl cis-trans	N/A	no	0.843	0.976	0.664	2e-63
Q54SM3	179	Peptidyl-prolyl cis-trans	no	no	0.843	0.932	0.682	2e-63
P24525	171	Peptidyl-prolyl cis-trans	N/A	no	0.858	0.994	0.676	3e-63

>sp|Q8LDP4|CP19D_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2

 Score =  308 bits (789), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 145/180 (80%), Positives = 165/180 (91%)

Query: 19  NSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPL 78
            ++E+L++VTHKVYFD+E+ GK  GR+V+GLFGKAVPKT ENFRALCTGEKG+GKSGKPL
Sbjct: 22  QAKEDLKEVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPL 81

Query: 79  YYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPD 138
           +YKGS FHRIIPSFMIQGGDFT G+G GGESI+G+ FADENFKLKHTGPGVLSMAN+G D
Sbjct: 82  HYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGED 141

Query: 139 TNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL 198
           TNGSQFFITTV TSWLDGRHVVFGKV+ GMDVV KIEAEG+QSG PKSKVVI++SGE+ L
Sbjct: 142 TNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGELPL 201

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. May be involved during embryogenesis and organ development by regulating the folding of EMB30/GNOM, and thus, by modulating its activity.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9SP02|CP20A_ARATH Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1

 Score =  306 bits (783), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 146/179 (81%), Positives = 162/179 (90%)

Query: 20  SREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY 79
           S+E L+++THKVYFD+E+ GK  GRIVMGLFGK VPKTVENFRALCTGEKGIGK+GK L+
Sbjct: 26  SKENLKEITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALH 85

Query: 80  YKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDT 139
           YKGSSFHRIIPSFM+QGGDFT G+G GGESI+GE FADENFKLKHTGPG LSMANAG DT
Sbjct: 86  YKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDT 145

Query: 140 NGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL 198
           NGSQFFITTV TSWLDGRHVVFGKV++GMDVV K+EAEG QSG PKSKVVI +SGE+ L
Sbjct: 146 NGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGELPL 204

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Seems to be involved in root development.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TW32|PPIB_DICDI Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1

 Score =  273 bits (698), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 156/189 (82%), Gaps = 1/189 (0%)

Query: 8   VSVALLWALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTG 67
           + +  LWA+   + ++  K+T+KV+FDIE+  KP GRIV GL+GK VPKTVENFRALCTG
Sbjct: 10  IVLVTLWAMPSEAGKD-PKITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTG 68

Query: 68  EKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGP 127
           EKG+G SGKPL+YK S FHRIIP+FMIQGGDFT GDG GGESI+G+ F DENFK+KH+ P
Sbjct: 69  EKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKP 128

Query: 128 GVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSK 187
           G+LSMANAGP+TNGSQFFITTV+TSWLDGRH VFG+V+ GMD+V+ +E+ G QSG P   
Sbjct: 129 GLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKI 188

Query: 188 VVISNSGEM 196
             ISNSGE+
Sbjct: 189 AKISNSGEL 197

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P52015|CYP7_CAEEL Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2

 Score =  256 bits (654), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 117/167 (70%), Positives = 141/167 (84%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           +V+FDI + GKP GRIVM L+   VPKT ENFRALCTGEKG+GKSGKPL++KGS FHRII
Sbjct: 5   RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRII 64

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FMIQGGDFT G+G GGESI+GE F DENFK KHTGPGVLSMANAGP+TNGSQFF+ TV
Sbjct: 65  PEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T+WLDG+HVVFG+V+ G+D+V K+E  G  SG PKS+ +I++ G++
Sbjct: 125 KTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P52011|CYP3_CAEEL Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1

 Score =  249 bits (637), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 116/167 (69%), Positives = 139/167 (83%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           KV+FDI +GGK  GRIVM L+   VPKT  NFRALCTGE GIGKSGKPL++KGS FHRII
Sbjct: 5   KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P+FMIQGGDFT G+G GGESI+GE F DENFK KHTGPGVLSMANAGP+TNGSQFF+ TV
Sbjct: 65  PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T WLDG+HVVFG+V+ G+DVV+ +E+ G QSG+P    +I++ G++
Sbjct: 125 KTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Caenorhabditis elegans (taxid: 6239)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q39613|CYPH_CATRO Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1

 Score =  245 bits (625), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 113/168 (67%), Positives = 134/168 (79%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           +V+FD+ VGG+P GRIVM LF    P+T ENFRALCTGEKG G+SGKPL+YK SSFHR+I
Sbjct: 5   RVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVI 64

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM QGGDFT G+G GGESI+G  FADENF  KHTGPG+LSMANAGP+TNGSQFFI T 
Sbjct: 65  PGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTA 124

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
            T WLDG+HVVFG+V+ GMDVV+ IE  G  SG    KVV+ + G+++
Sbjct: 125 KTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Catharanthus roseus (taxid: 4058)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9SKQ0|CP19B_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1

 Score =  243 bits (621), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 112/168 (66%), Positives = 138/168 (82%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           KV+FD+ +GG P G+IVM L+    PKT ENFRALCTGEKG+G+SGKPL++KGSSFHR+I
Sbjct: 6   KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVI 65

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P+FM QGGDFT G+G GGESI+G  F DENF+ KHTGPG+LSMANAG +TNGSQFFI TV
Sbjct: 66  PNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTV 125

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
            T WLDG+HVVFG+V+ G+DVV+ IE  G  SG+P   VVI++ GE++
Sbjct: 126 KTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P21568|CYPH_SOLLC Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1

 Score =  241 bits (616), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/167 (66%), Positives = 132/167 (79%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           KV+FD+ +GG P GR+VM LF    PKT ENFRALCTGEKG+GK GKPL+YKGS+FHR+I
Sbjct: 5   KVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVI 64

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM QGGDFT G+G GGESI+G  F DENF  KHTGPG+LSMANAGP TNGSQFFI T 
Sbjct: 65  PGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTA 124

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T WL+G+HVVFG+V+ GMDV++K EA G  SG     VVI++ G++
Sbjct: 125 KTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Solanum lycopersicum (taxid: 4081)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q54SM3|PPIA_DICDI Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1

 Score =  241 bits (615), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 133/167 (79%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           +V+FDI +GG   G++VM L+   VPKT ENFRALCTGEKGIGKSGKPL YKGSSFHR+I
Sbjct: 13  RVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIGKSGKPLSYKGSSFHRVI 72

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
            +FM QGGDFT+G+G GGESI+G  FADENFKLKH G G LSMANAG +TNGSQFFI   
Sbjct: 73  TNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVA 132

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T WLDG+HVVFG V  GMDVV+K+EA G QSG+    VVI+N G++
Sbjct: 133 PTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P24525|CYPH_BRANA Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2

 Score =  241 bits (614), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 132/170 (77%)

Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V  KVYFD+ VG K  GRIVM L+   VP+T ENFRALCTGE+GIGKSGKPL+YKGS+FH
Sbjct: 2   VNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFH 61

Query: 87  RIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           R+IP FM QGGDFT G+G GGESI+G  F DENF  KHTGPG+LSM NAG +TNGSQFFI
Sbjct: 62  RVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFI 121

Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  TSWLDG+HVVFG+V+ GMDVVR IE  G  SG    KVV  + G++
Sbjct: 122 CTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Brassica napus (taxid: 3708)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
255569359	204	cyclophilin, putative [Ricinus communis]	0.909	0.882	0.855	6e-88
210063564	207	cyclophilin [Camellia oleifera]	0.984	0.942	0.775	1e-87
224104269	207	predicted protein [Populus trichocarpa]	0.964	0.922	0.771	1e-86
225434588	203	PREDICTED: peptidyl-prolyl cis-trans iso	0.904	0.881	0.854	3e-86
297745898	200	unnamed protein product [Vitis vinifera]	0.904	0.895	0.854	3e-86
152206078	207	cyclophilin-like protein [Nicotiana taba	0.949	0.908	0.821	4e-86
147785892	203	hypothetical protein VITISV_015871 [Viti	0.904	0.881	0.854	4e-86
118481371	207	unknown [Populus trichocarpa]	0.984	0.942	0.756	6e-86
395146517	206	peptidyl-prolyl cis-trans isomerase [Lin	0.979	0.941	0.759	2e-85
449450816	204	PREDICTED: peptidyl-prolyl cis-trans iso	0.904	0.877	0.849	2e-85

>gi|255569359|ref|XP_002525647.1| cyclophilin, putative [Ricinus communis] gi|223535083|gb|EEF36765.1| cyclophilin, putative [Ricinus communis]

 Score =  328 bits (842), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 154/180 (85%), Positives = 169/180 (93%)

Query: 19  NSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPL 78
           N +E+L+++THKVYFD+E+ GKP GR+VMGLFGKAVPKT ENFRALCTGEKG+GKSGKPL
Sbjct: 25  NPKEDLKEITHKVYFDVEIAGKPAGRVVMGLFGKAVPKTAENFRALCTGEKGVGKSGKPL 84

Query: 79  YYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPD 138
           +YKGS+FHRIIPSFMIQGGDFTLGDGRGGESI+GE FADENFKLKHTGPG LSMANAGPD
Sbjct: 85  HYKGSAFHRIIPSFMIQGGDFTLGDGRGGESIYGEKFADENFKLKHTGPGFLSMANAGPD 144

Query: 139 TNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL 198
           TNGSQFFITTV TSWLDGRHVVFGKVLSGMDVV KIEAEGRQSG PKSKV I++SGE+ L
Sbjct: 145 TNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGRQSGTPKSKVTIADSGELPL 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|210063564|gb|ACJ06541.1| cyclophilin [Camellia oleifera]

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/205 (77%), Positives = 176/205 (85%), Gaps = 10/205 (4%)

Query: 4   KTRLVSVALLWAL----------EGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKA 53
           +TR  S+AL+W L             S+E+L++VTHKVYFD+E+ GKP GRIVMGLFGKA
Sbjct: 3   RTRSFSLALVWTLVLFATLALTQAKKSKEDLKEVTHKVYFDVEIAGKPAGRIVMGLFGKA 62

Query: 54  VPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGE 113
           VPKT ENFRALCTGEKG+GKSGKPL+YKGS FHRIIPSFM+QGGDFTLGDGRGGESI+G 
Sbjct: 63  VPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMLQGGDFTLGDGRGGESIYGG 122

Query: 114 SFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRK 173
            FADENFKLKHTGPG+LSMANAGPDTNGSQFFITTV TSWLDGRHVVFGKVLSGMDVV K
Sbjct: 123 EFADENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYK 182

Query: 174 IEAEGRQSGEPKSKVVISNSGEMAL 198
           IEAEG QSG PKS V I++SGE+ L
Sbjct: 183 IEAEGNQSGTPKSNVQIADSGELPL 207

Source: Camellia oleifera

Species: Camellia oleifera

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104269|ref|XP_002313378.1| predicted protein [Populus trichocarpa] gi|118483106|gb|ABK93462.1| unknown [Populus trichocarpa] gi|118483497|gb|ABK93647.1| unknown [Populus trichocarpa] gi|118488634|gb|ABK96129.1| unknown [Populus trichocarpa] gi|222849786|gb|EEE87333.1| predicted protein [Populus trichocarpa]

 Score =  324 bits (830), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 155/201 (77%), Positives = 175/201 (87%), Gaps = 10/201 (4%)

Query: 8   VSVALLWAL----------EGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKT 57
           ++V LLW L             S+E+L ++THKVYFD+EV GKP GRI +GLFGK VPKT
Sbjct: 7   LAVTLLWTLVLFGTLTLIQAKKSKEDLTEITHKVYFDVEVDGKPAGRITIGLFGKTVPKT 66

Query: 58  VENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFAD 117
           VENFRALCTGEKG+GKSGKPL+YKGS+FHRIIPSFMIQGGDFTLGDGRGGESI+GE FAD
Sbjct: 67  VENFRALCTGEKGVGKSGKPLHYKGSAFHRIIPSFMIQGGDFTLGDGRGGESIYGEKFAD 126

Query: 118 ENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAE 177
           ENFKLKHTGPG+LSMANAG DTNGSQFFITTV TSWLDGRHVVFGKV+SGMDVV K+EAE
Sbjct: 127 ENFKLKHTGPGILSMANAGSDTNGSQFFITTVTTSWLDGRHVVFGKVISGMDVVYKVEAE 186

Query: 178 GRQSGEPKSKVVISNSGEMAL 198
           GRQ+G PKSKVV+++SGE+ L
Sbjct: 187 GRQNGTPKSKVVVADSGELPL 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434588|ref|XP_002277763.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Vitis vinifera]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 153/179 (85%), Positives = 168/179 (93%)

Query: 20  SREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY 79
           S E L++VTHKVYFD+E+ GKP GR+VMGLFGK VPKTVENFRALCTGEKGIG SGKPL+
Sbjct: 25  STENLKEVTHKVYFDVEIDGKPAGRVVMGLFGKTVPKTVENFRALCTGEKGIGSSGKPLH 84

Query: 80  YKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDT 139
           +KGS+FHRIIPSFMIQGGDFTLGDGRGGESI+GE FADENFKLKHTGPG+LSMANAGPDT
Sbjct: 85  FKGSAFHRIIPSFMIQGGDFTLGDGRGGESIYGEKFADENFKLKHTGPGLLSMANAGPDT 144

Query: 140 NGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL 198
           NGSQFFITTV TSWLDGRHVVFGKVLSGMDVV K+EAEGRQSG PK+KVVI++SGE+ L
Sbjct: 145 NGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKMEAEGRQSGTPKTKVVIADSGELPL 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745898|emb|CBI15954.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 153/179 (85%), Positives = 168/179 (93%)

Query: 20  SREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY 79
           S E L++VTHKVYFD+E+ GKP GR+VMGLFGK VPKTVENFRALCTGEKGIG SGKPL+
Sbjct: 22  STENLKEVTHKVYFDVEIDGKPAGRVVMGLFGKTVPKTVENFRALCTGEKGIGSSGKPLH 81

Query: 80  YKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDT 139
           +KGS+FHRIIPSFMIQGGDFTLGDGRGGESI+GE FADENFKLKHTGPG+LSMANAGPDT
Sbjct: 82  FKGSAFHRIIPSFMIQGGDFTLGDGRGGESIYGEKFADENFKLKHTGPGLLSMANAGPDT 141

Query: 140 NGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL 198
           NGSQFFITTV TSWLDGRHVVFGKVLSGMDVV K+EAEGRQSG PK+KVVI++SGE+ L
Sbjct: 142 NGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKMEAEGRQSGTPKTKVVIADSGELPL 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|152206078|gb|ABS30424.1| cyclophilin-like protein [Nicotiana tabacum]

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 156/190 (82%), Positives = 174/190 (91%), Gaps = 2/190 (1%)

Query: 9   SVALLWALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGE 68
           ++AL  A E  S+E L++VTHKVYFD+E+ GKP GRIVMGLFGK V KT +NFRALCTGE
Sbjct: 20  TLALAQAKE--SQESLKEVTHKVYFDVEIDGKPAGRIVMGLFGKTVSKTADNFRALCTGE 77

Query: 69  KGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPG 128
           KG+GKSGKPL+YKGS+FHRIIPSFM+QGGDFTLGDGRGGESI+GESFADENFK+KHTGPG
Sbjct: 78  KGVGKSGKPLHYKGSTFHRIIPSFMLQGGDFTLGDGRGGESIYGESFADENFKIKHTGPG 137

Query: 129 VLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKV 188
           +LSMANAGPDTNGSQFFITTV TSWLDGRHVVFGKVLSGMDVV KIEAEG QSG PKSKV
Sbjct: 138 LLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGGQSGTPKSKV 197

Query: 189 VISNSGEMAL 198
           VI++SGE+ L
Sbjct: 198 VIADSGELPL 207

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147785892|emb|CAN70835.1| hypothetical protein VITISV_015871 [Vitis vinifera]

 Score =  322 bits (826), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/179 (85%), Positives = 167/179 (93%)

Query: 20  SREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY 79
           S E L++VTHKVYFD+E+ GKP GR+VMGLFGK VPKTVENFRALCTGEKGIG SGKPL+
Sbjct: 25  STENLKEVTHKVYFDVEIDGKPAGRVVMGLFGKTVPKTVENFRALCTGEKGIGSSGKPLH 84

Query: 80  YKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDT 139
           +KGS+FHRIIPSFMIQGGDFTLGDGRGGESI+GE FADENFKLKHTGPG+LSMANAGPDT
Sbjct: 85  FKGSAFHRIIPSFMIQGGDFTLGDGRGGESIYGEKFADENFKLKHTGPGLLSMANAGPDT 144

Query: 140 NGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL 198
           NGSQFFITTV TSWLDGRHVVFGKVLSGMDVV K+EAEGRQSG PK+KVVI +SGE+ L
Sbjct: 145 NGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKMEAEGRQSGTPKTKVVIXDSGELPL 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481371|gb|ABK92628.1| unknown [Populus trichocarpa]

 Score =  322 bits (825), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 155/205 (75%), Positives = 176/205 (85%), Gaps = 10/205 (4%)

Query: 4   KTRLVSVALLWAL----------EGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKA 53
           ++ L++V LLW L             S+E+L+++THKVYFD+E+ GKP GRI MGLFGK 
Sbjct: 3   RSGLLAVTLLWTLVLFGTIAVTQAKKSKEDLKEITHKVYFDVEIDGKPAGRITMGLFGKT 62

Query: 54  VPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGE 113
           VPKT ENFRALCTGEKGIGK GKPL+YKG+ FHRIIPSFMIQGGDFTLGDGRGGESI+GE
Sbjct: 63  VPKTAENFRALCTGEKGIGKDGKPLHYKGNVFHRIIPSFMIQGGDFTLGDGRGGESIYGE 122

Query: 114 SFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRK 173
           +FADENFKLKHTGPG LSMANAG DTNGSQFFITTV TSWLDGRHVVFGKV+SGMDVV K
Sbjct: 123 NFADENFKLKHTGPGTLSMANAGRDTNGSQFFITTVTTSWLDGRHVVFGKVMSGMDVVYK 182

Query: 174 IEAEGRQSGEPKSKVVISNSGEMAL 198
           +EAEGRQ+G PKSKVVI++SGE+ L
Sbjct: 183 MEAEGRQNGTPKSKVVIADSGELPL 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146517|gb|AFN53672.1| peptidyl-prolyl cis-trans isomerase [Linum usitatissimum]

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/204 (75%), Positives = 175/204 (85%), Gaps = 10/204 (4%)

Query: 5   TRLVSVALLWAL----------EGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAV 54
           ++ ++VALLW               S E+L+++THKVYFD+E+ GKP GRI MGL+GKAV
Sbjct: 3   SKSLAVALLWGALLFGTLALIQAKKSDEKLKEITHKVYFDVEIDGKPAGRITMGLYGKAV 62

Query: 55  PKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGES 114
           PKT ENFRALCTGEKG+GKSGKPL+YKGSSFHRIIPSFM+QGGDFT GDGRGGESI+GE 
Sbjct: 63  PKTAENFRALCTGEKGVGKSGKPLHYKGSSFHRIIPSFMLQGGDFTHGDGRGGESIYGEK 122

Query: 115 FADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKI 174
           FADENFKLKHTGPG+LSMANAG DTNGSQFFITTV TSWLDGRHVVFGKVLSGMDVV K+
Sbjct: 123 FADENFKLKHTGPGLLSMANAGKDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKV 182

Query: 175 EAEGRQSGEPKSKVVISNSGEMAL 198
           EAEG+QSG PKSKVVI +SGE+ L
Sbjct: 183 EAEGKQSGTPKSKVVIVDSGELPL 206

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450816|ref|XP_004143158.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4-like [Cucumis sativus] gi|449496575|ref|XP_004160169.1| PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4-like [Cucumis sativus]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 152/179 (84%), Positives = 167/179 (93%)

Query: 20  SREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY 79
           S+E L++VTHKVYFD+E+ GK  GRI MGLFGKAVPKT ENFRALCTGEKG+G+SGKPL+
Sbjct: 26  SKENLKEVTHKVYFDVEIDGKAAGRIEMGLFGKAVPKTAENFRALCTGEKGVGQSGKPLH 85

Query: 80  YKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDT 139
           YKGS+FHRIIPSFMIQGGDFTLGDGRGGESI+GE FADENFKLKHTGPG+LSMANAG DT
Sbjct: 86  YKGSAFHRIIPSFMIQGGDFTLGDGRGGESIYGEKFADENFKLKHTGPGLLSMANAGSDT 145

Query: 140 NGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL 198
           NGSQFFITTV TSWLDGRHVVFGKVLSGMDVV KIEAEGRQ+G PKSKVVI++SGE+ L
Sbjct: 146 NGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGRQNGTPKSKVVIADSGELPL 204

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2045663	201	CYP5 "cyclophilin 5" [Arabidop	0.904	0.890	0.759	6.7e-72
TAIR|locus:2178863	204	ROC7 "rotamase CYP 7" [Arabido	0.969	0.941	0.725	1.8e-71
TAIR|locus:2081993	228	AT3G55920 [Arabidopsis thalian	0.893	0.776	0.717	3.7e-70
DICTYBASE|DDB_G0269120	197	cypB "cyclophilin B" [Dictyost	0.949	0.954	0.624	1.8e-62
WB|WBGene00000883	171	cyn-7 [Caenorhabditis elegans	0.843	0.976	0.646	6.6e-58
WB|WBGene00000879	173	cyn-3 [Caenorhabditis elegans	0.843	0.965	0.640	5.3e-56
UNIPROTKB|P52011	173	cyn-3 "Peptidyl-prolyl cis-tra	0.843	0.965	0.640	5.3e-56
WB|WBGene00000878	172	cyn-2 [Caenorhabditis elegans	0.843	0.970	0.652	6.1e-55
TAIR|locus:2047097	174	AT2G21130 [Arabidopsis thalian	0.848	0.965	0.613	3.4e-54
DICTYBASE|DDB_G0282359	179	ppiA "cyclophilin-type peptidy	0.843	0.932	0.628	4.9e-53

TAIR|locus:2045663 CYP5 "cyclophilin 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 136/179 (75%), Positives = 155/179 (86%)

Query:    20 SREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY 79
             ++E+L++VTHKVYFD+E+ GK  GR+V+GLFGKAVPKT ENFRALCTGEKG+GKSGKPL+
Sbjct:    23 AKEDLKEVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLH 82

Query:    80 YKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDT 139
             YKGS FHRIIPSFMIQ            ESI+G+ FADENFKLKHTGPGVLSMAN+G DT
Sbjct:    83 YKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDT 142

Query:   140 NGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL 198
             NGSQFFITTV TSWLDGRHVVFGKV+ GMDVV KIEAEG+QSG PKSKVVI++SGE+ L
Sbjct:   143 NGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGELPL 201

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005771 "multivesicular body" evidence=IDA

GO:0005795 "Golgi stack" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

TAIR|locus:2178863 ROC7 "rotamase CYP 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 140/193 (72%), Positives = 159/193 (82%)

Query:     7 LVSVALLWALEGN-SREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALC 65
             L+ +  L A++   S+E L+++THKVYFD+E+ GK  GRIVMGLFGK VPKTVENFRALC
Sbjct:    12 LLLLGTLSAIQAKKSKENLKEITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALC 71

Query:    66 TGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHT 125
             TGEKGIGK+GK L+YKGSSFHRIIPSFM+Q            ESI+GE FADENFKLKHT
Sbjct:    72 TGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHT 131

Query:   126 GPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPK 185
             GPG LSMANAG DTNGSQFFITTV TSWLDGRHVVFGKV++GMDVV K+EAEG QSG PK
Sbjct:   132 GPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPK 191

Query:   186 SKVVISNSGEMAL 198
             SKVVI +SGE+ L
Sbjct:   192 SKVVIVDSGELPL 204

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0048364 "root development" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081993 AT3G55920 [Arabidopsis thaliana (taxid:3702)]

 Score = 683 (245.5 bits), Expect = 3.7e-70, Sum P(2) = 3.7e-70
 Identities = 127/177 (71%), Positives = 146/177 (82%)

Query:    22 EELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYK 81
             E+LE VTHKVYFDI++ G P GRI++GLFG  VPKT ENFR+LCTGEKG+G  GKPLY+K
Sbjct:    52 EDLEGVTHKVYFDIQINGSPAGRILIGLFGNIVPKTAENFRSLCTGEKGVGNMGKPLYFK 111

Query:    82 GSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNG 141
             GSSFHRIIP FMIQ            ESI+G+ FADENFKLKHTGPG LSMAN+GPD+NG
Sbjct:   112 GSSFHRIIPGFMIQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGFLSMANSGPDSNG 171

Query:   142 SQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMAL 198
             SQFFITTV TSWLDG HVVFGKVLSGM+VVRKIEA+G+ SG PK+ V+I  SGE++L
Sbjct:   172 SQFFITTVTTSWLDGHHVVFGKVLSGMEVVRKIEAQGQDSGVPKANVIIFASGEVSL 228

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

DICTYBASE|DDB_G0269120 cypB "cyclophilin B" [Dictyostelium discoideum (taxid:44689)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 118/189 (62%), Positives = 146/189 (77%)

Query:     8 VSVALLWALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTG 67
             + +  LWA+   + ++  K+T+KV+FDIE+  KP GRIV GL+GK VPKTVENFRALCTG
Sbjct:    10 IVLVTLWAMPSEAGKD-PKITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTG 68

Query:    68 EKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGP 127
             EKG+G SGKPL+YK S FHRIIP+FMIQ            ESI+G+ F DENFK+KH+ P
Sbjct:    69 EKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKP 128

Query:   128 GVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSK 187
             G+LSMANAGP+TNGSQFFITTV+TSWLDGRH VFG+V+ GMD+V+ +E+ G QSG P   
Sbjct:   129 GLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKI 188

Query:   188 VVISNSGEM 196
               ISNSGE+
Sbjct:   189 AKISNSGEL 197

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

WB|WBGene00000883 cyn-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 108/167 (64%), Positives = 131/167 (78%)

Query:    30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
             +V+FDI + GKP GRIVM L+   VPKT ENFRALCTGEKG+GKSGKPL++KGS FHRII
Sbjct:     5 RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRII 64

Query:    90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
             P FMIQ            ESI+GE F DENFK KHTGPGVLSMANAGP+TNGSQFF+ TV
Sbjct:    65 PEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

Query:   150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
              T+WLDG+HVVFG+V+ G+D+V K+E  G  SG PKS+ +I++ G++
Sbjct:   125 KTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQL 171

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

WB|WBGene00000879 cyn-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 107/167 (64%), Positives = 129/167 (77%)

Query:    30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
             KV+FDI +GGK  GRIVM L+   VPKT  NFRALCTGE GIGKSGKPL++KGS FHRII
Sbjct:     5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64

Query:    90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
             P+FMIQ            ESI+GE F DENFK KHTGPGVLSMANAGP+TNGSQFF+ TV
Sbjct:    65 PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

Query:   150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
              T WLDG+HVVFG+V+ G+DVV+ +E+ G QSG+P    +I++ G++
Sbjct:   125 KTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;IDA

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005623 "cell" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

UNIPROTKB|P52011 cyn-3 "Peptidyl-prolyl cis-trans isomerase 3" [Caenorhabditis elegans (taxid:6239)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 107/167 (64%), Positives = 129/167 (77%)

Query:    30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
             KV+FDI +GGK  GRIVM L+   VPKT  NFRALCTGE GIGKSGKPL++KGS FHRII
Sbjct:     5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64

Query:    90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
             P+FMIQ            ESI+GE F DENFK KHTGPGVLSMANAGP+TNGSQFF+ TV
Sbjct:    65 PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

Query:   150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
              T WLDG+HVVFG+V+ G+DVV+ +E+ G QSG+P    +I++ G++
Sbjct:   125 KTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00000878 cyn-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 109/167 (65%), Positives = 126/167 (75%)

Query:    30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
             KV+FDI +GGK  GRIVM L+   VPKT ENFRALCTGEKG GKSGK L++KGS FHRII
Sbjct:     5 KVFFDITIGGKKGGRIVMELYNDIVPKTAENFRALCTGEKGKGKSGKKLHFKGSKFHRII 64

Query:    90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
             P FMIQ            ESI GE F DENFK KHTGPGVLSMAN G +TNGSQFF+ TV
Sbjct:    65 PEFMIQGGDFTEGNGTGGESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTV 124

Query:   150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
              T+WLDG+HVVFGKV+ GMDVV+ IE++G + G P +  VI++ GEM
Sbjct:   125 KTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGEM 171

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

TAIR|locus:2047097 AT2G21130 [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 103/168 (61%), Positives = 128/168 (76%)

Query:    30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
             KV+FD+ +GG P G+IVM L+    PKT ENFRALCTGEKG+G+SGKPL++KGSSFHR+I
Sbjct:     6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVI 65

Query:    90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
             P+FM Q            ESI+G  F DENF+ KHTGPG+LSMANAG +TNGSQFFI TV
Sbjct:    66 PNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTV 125

Query:   150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
              T WLDG+HVVFG+V+ G+DVV+ IE  G  SG+P   VVI++ GE++
Sbjct:   126 KTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

DICTYBASE|DDB_G0282359 ppiA "cyclophilin-type peptidylprolyl cis-trans isomerase (PPIase)" [Dictyostelium discoideum (taxid:44689)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 105/167 (62%), Positives = 122/167 (73%)

Query:    30 KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
             +V+FDI +GG   G++VM L+   VPKT ENFRALCTGEKGIGKSGKPL YKGSSFHR+I
Sbjct:    13 RVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIGKSGKPLSYKGSSFHRVI 72

Query:    90 PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
              +FM Q            ESI+G  FADENFKLKH G G LSMANAG +TNGSQFFI   
Sbjct:    73 TNFMCQGGDFTMGNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVA 132

Query:   150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
              T WLDG+HVVFG V  GMDVV+K+EA G QSG+    VVI+N G++
Sbjct:   133 PTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179

GO:0030587 "sorocarp development" evidence=IMP

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IEA;ISS

GO:0042277 "peptide binding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P23284	PPIB_HUMAN	5, ., 2, ., 1, ., 8	0.6098	0.8787	0.8055	yes	no
Q39613	CYPH_CATRO	5, ., 2, ., 1, ., 8	0.6726	0.8484	0.9767	N/A	no
P0CP78	PPIB_CRYNJ	5, ., 2, ., 1, ., 8	0.6097	0.9949	0.8528	yes	no
P0CP79	PPIB_CRYNB	5, ., 2, ., 1, ., 8	0.6097	0.9949	0.8528	N/A	no
Q9TW32	PPIB_DICDI	5, ., 2, ., 1, ., 8	0.6772	0.9494	0.9543	yes	no
P35627	CYPX_USEUD	5, ., 2, ., 1, ., 8	0.6886	0.8333	0.9763	N/A	no
Q8X166	PPIB_ASPNG	5, ., 2, ., 1, ., 8	0.6282	0.9040	0.8443	yes	no
P0C1I7	CYP5_RHIO9	5, ., 2, ., 1, ., 8	0.6706	0.8434	0.9488	N/A	no
P54985	PPIA_BLAGE	5, ., 2, ., 1, ., 8	0.6287	0.8080	0.9756	N/A	no
P52010	CYP2_CAEEL	5, ., 2, ., 1, ., 8	0.7065	0.8434	0.9709	no	no
O49886	CYPH_LUPLU	5, ., 2, ., 1, ., 8	0.6428	0.8484	0.9767	N/A	no
P21568	CYPH_SOLLC	5, ., 2, ., 1, ., 8	0.6646	0.8434	0.9766	N/A	no
P21569	CYPH_MAIZE	5, ., 2, ., 1, ., 8	0.6547	0.8484	0.9767	N/A	no
P0C1I8	CYP6_RHIO9	5, ., 2, ., 1, ., 8	0.6467	0.8434	0.9488	N/A	no
Q8LDP4	CP19D_ARATH	5, ., 2, ., 1, ., 8	0.8055	0.9090	0.8955	yes	no
Q6C4W6	PPIB_YARLI	5, ., 2, ., 1, ., 8	0.5879	0.9646	0.8377	yes	no
P80311	PPIB_BOVIN	5, ., 2, ., 1, ., 8	0.625	0.8686	0.7962	yes	no
Q9SP02	CP20A_ARATH	5, ., 2, ., 1, ., 8	0.8156	0.9040	0.8774	no	no
P0C1H7	PPIA1_RHIO9	5, ., 2, ., 1, ., 8	0.6347	0.8080	0.9756	N/A	no
P73789	PPI2_SYNY3	5, ., 2, ., 1, ., 8	0.6526	0.8434	0.9766	N/A	no
P52015	CYP7_CAEEL	5, ., 2, ., 1, ., 8	0.7005	0.8434	0.9766	yes	no
P24525	CYPH_BRANA	5, ., 2, ., 1, ., 8	0.6764	0.8585	0.9941	N/A	no
Q01490	PPIB_ORPSP	5, ., 2, ., 1, ., 8	0.6373	0.9090	0.8866	N/A	no
P24369	PPIB_MOUSE	5, ., 2, ., 1, ., 8	0.6373	0.8787	0.8055	yes	no
P24368	PPIB_RAT	5, ., 2, ., 1, ., 8	0.6318	0.8787	0.8055	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.983
4th Layer	5.2.1.8	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_IX3737 RecName- Full=Peptidyl-prolyl cis-trans isomerase; EC=5.2.1.8;; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity) (208 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	1e-108
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	2e-94
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	4e-72
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	2e-62
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	5e-62
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	7e-60
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	7e-52
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	7e-50
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	1e-46
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	3e-43
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	3e-38
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	2e-31
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	1e-27
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	2e-20
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	3e-16
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	2e-15
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	9e-09

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  306 bits (787), Expect = e-108
 Identities = 122/166 (73%), Positives = 139/166 (83%), Gaps = 2/166 (1%)

Query: 29  HKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRI 88
            KV+FDI +GG+P GRIVM LF   VPKT ENFRALCTGEKG G  GKP  YKGS+FHR+
Sbjct: 1   PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKG--GKPFGYKGSTFHRV 58

Query: 89  IPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
           IP FMIQGGDFT G+G GG+SI+GE F DENFKLKHTGPG+LSMANAGP+TNGSQFFITT
Sbjct: 59  IPDFMIQGGDFTRGNGTGGKSIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITT 118

Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSG 194
           V T WLDG+HVVFGKV+ GMDVV+KIE  G  +G+PK KVVI++ G
Sbjct: 119 VKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  272 bits (697), Expect = 2e-94
 Identities = 111/167 (66%), Positives = 128/167 (76%), Gaps = 1/167 (0%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           KV+FDI +   P GRIV  LF    PKT ENFRALC G+K +G SGK L+YKGS FHRII
Sbjct: 17  KVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDK-VGSSGKNLHYKGSIFHRII 75

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM QGGD T  +G GGESI+G  F DENFKLKH  PG+LSMANAGP+TNGSQFFITTV
Sbjct: 76  PQFMCQGGDITNHNGTGGESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTV 135

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
              WLDG+HVVFGKV+ GM+VVR +E EG QSG PK  VV+++ GE+
Sbjct: 136 PCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTDCGEL 182

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  216 bits (551), Expect = 4e-72
 Identities = 101/169 (59%), Positives = 114/169 (67%), Gaps = 6/169 (3%)

Query: 31  VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
           V+FD+ +GG P GRI M LF    PKT ENFR  CTGE    K+G P  YKG  FHR+I 
Sbjct: 21  VFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGE--FRKAGLPQGYKGCQFHRVIK 78

Query: 91  SFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
            FMIQGGDF  GDG G  SI+G  F DENF  KHTGPG+LSMAN+GP+TNG QFFIT   
Sbjct: 79  DFMIQGGDFLKGDGTGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAK 138

Query: 151 TSWLDGRHVVFGKVL-SGMDVVRKIE--AEGRQSGEPKSKVVISNSGEM 196
             WLD +HVVFG+VL  G+ VVRKIE  A G  +  PK   VIS  GEM
Sbjct: 139 CDWLDNKHVVFGRVLGDGLLVVRKIENVATG-PNNRPKLACVISECGEM 186

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  190 bits (484), Expect = 2e-62
 Identities = 84/153 (54%), Positives = 98/153 (64%), Gaps = 14/153 (9%)

Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTL 101
            GRIV+ L+G   PKTVENF +L  G           +Y G++FHR+IP FMIQGGD T 
Sbjct: 6   KGRIVIELYGDEAPKTVENFLSLARGG----------FYDGTTFHRVIPGFMIQGGDPT- 54

Query: 102 GDGRGGESIFGESFADENFKLK-HTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
               GG S  G  F DENF LK H   G LSMANAGP+TNGSQFFITT  T  LDG+H V
Sbjct: 55  -GTGGGGSGPGYKFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTV 113

Query: 161 FGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISN 192
           FGKV+ GMDVV KIE  +  ++G P   V IS+
Sbjct: 114 FGKVVEGMDVVDKIERGDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  189 bits (482), Expect = 5e-62
 Identities = 72/162 (44%), Positives = 86/162 (53%), Gaps = 21/162 (12%)

Query: 37  VGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQG 96
           +     G I + L+    PKTV NF  L           K  +Y G+ FHR+IP FMIQG
Sbjct: 3   ILETNKGDITIELYPDKAPKTVANFLQLV----------KEGFYDGTIFHRVIPGFMIQG 52

Query: 97  GDFTLGDGRGGESIFGESFADENFKLKH--TGPGVLSMANAG-PDTNGSQFFITTVITSW 153
           GD T GDG GG       F DENF L       G LSMA AG P++NGSQFFIT V   +
Sbjct: 53  GDPTGGDGTGGPGP---PFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPF 109

Query: 154 LDGRHVVFGKVLSGMDVVRKIEA-----EGRQSGEPKSKVVI 190
           LDG++ VFG+V+ GMDVV KI+       G     P   V I
Sbjct: 110 LDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKI 151

Length = 158

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  183 bits (467), Expect = 7e-60
 Identities = 74/161 (45%), Positives = 91/161 (56%), Gaps = 18/161 (11%)

Query: 32  YFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPS 91
           + DI      +GRIV+ LFG   PKTVENF +LC  +KG        +Y G+ FHR+IP 
Sbjct: 1   FLDITTN---LGRIVIELFGDEAPKTVENFLSLC--KKG--------FYDGTIFHRVIPG 47

Query: 92  FMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVIT 151
           FMIQGGD T G G GG+     S  DE         G LSMA +GP++ GSQFFIT    
Sbjct: 48  FMIQGGDPT-GPGTGGK----RSIPDEFVSKLKHKRGTLSMARSGPNSAGSQFFITLGDA 102

Query: 152 SWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISN 192
             LDG + VFG+V+ GMDVV KIE        P   V I++
Sbjct: 103 PHLDGGYTVFGRVVEGMDVVEKIEKVETDGDRPLKDVKITS 143

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  163 bits (414), Expect = 7e-52
 Identities = 75/134 (55%), Positives = 90/134 (67%), Gaps = 12/134 (8%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G I + LF +  PKTVENF           ++G   YY  + FHR+I  FMIQ GD   G
Sbjct: 7   GDIHIRLFPEEAPKTVENFTTHA-------RNG---YYNNTIFHRVIKGFMIQTGD-PTG 55

Query: 103 DGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVF 161
           DG GGESI+G+ F DE +  LKH  P  LSMANAGP+TNGSQFFITTV T WLD +H VF
Sbjct: 56  DGTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVF 115

Query: 162 GKVLSGMDVVRKIE 175
           G+V+ GMDVV++IE
Sbjct: 116 GRVVKGMDVVQRIE 129

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  158 bits (401), Expect = 7e-50
 Identities = 75/150 (50%), Positives = 95/150 (63%), Gaps = 12/150 (8%)

Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTL 101
           +G I + L+    PKT +NF  L    +G        YY G+ FHR+I  FMIQGGD T 
Sbjct: 6   MGEITLELYWNHAPKTCKNFYELAK--RG--------YYNGTIFHRLIKDFMIQGGDPT- 54

Query: 102 GDGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
           G GRGG SI+G+ F DE + +LKHTG G+LSMANAGP+TNGSQFFIT   T WLDG+H +
Sbjct: 55  GTGRGGASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTI 114

Query: 161 FGKVLSGMDVVRKIEAEGRQSGEPKSKVVI 190
           FG+V  GM V+  +     Q+  P  +V I
Sbjct: 115 FGRVSKGMKVIENMVEVQTQTDRPIDEVKI 144

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  150 bits (381), Expect = 1e-46
 Identities = 72/150 (48%), Positives = 91/150 (60%), Gaps = 13/150 (8%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G + + L     PK  ENF  LC  +KG        YY G+ FHR I +FMIQGGD T G
Sbjct: 9   GDLNLELHCDKAPKACENFIKLC--KKG--------YYDGTIFHRSIRNFMIQGGDPT-G 57

Query: 103 DGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVF 161
            GRGGESI+G+ F DE    L H G GVLSMAN+GP+TNGSQFFIT      LDG+H VF
Sbjct: 58  TGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVF 117

Query: 162 GKVLSGMDVVRKIEAEGRQSGE-PKSKVVI 190
           G+V+ G++ +  +E       + PK ++ I
Sbjct: 118 GRVVGGLETLEAMENVPDPGTDRPKEEIKI 147

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  141 bits (358), Expect = 3e-43
 Identities = 70/152 (46%), Positives = 88/152 (57%), Gaps = 13/152 (8%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G I + LF    PK  ENF ALC        SG   YY G  FHR I  FM+Q GD T G
Sbjct: 10  GDIKIELFCDDCPKACENFLALCA-------SG---YYNGCIFHRNIKGFMVQTGDPT-G 58

Query: 103 DGRGGESIFGESFADENFK-LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVF 161
            G+GGESI+G+ F DE  + LKH   GV+SMAN GP+TNGSQFFIT      LDG++ VF
Sbjct: 59  TGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVF 118

Query: 162 GKVLSGMDVVRKIEA-EGRQSGEPKSKVVISN 192
           GKV+ G + +  +E     +   P  ++ I +
Sbjct: 119 GKVIDGFETLDTLEKLPVDKKYRPLEEIRIKD 150

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score =  129 bits (326), Expect = 3e-38
 Identities = 56/123 (45%), Positives = 72/123 (58%), Gaps = 12/123 (9%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G I + L+ K  PK   NF  LC             YY  + FHR++P F+IQGGD T G
Sbjct: 15  GDIDIELWSKEAPKACRNFIQLCLEG----------YYDNTIFHRVVPGFIIQGGDPT-G 63

Query: 103 DGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVF 161
            G GGESI+GE F DE + +L+    G++ MANAG D+NGSQFF T      L+ +H +F
Sbjct: 64  TGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLF 123

Query: 162 GKV 164
           GKV
Sbjct: 124 GKV 126

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score =  112 bits (281), Expect = 2e-31
 Identities = 56/142 (39%), Positives = 73/142 (51%), Gaps = 20/142 (14%)

Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTL 101
           +G +V+ LF    P    NF  LC          K  YY    F+ +   F+ Q GD T 
Sbjct: 6   LGDLVIDLFTDECPLACLNFLKLC----------KLKYYNFCLFYNVQKDFIAQTGDPT- 54

Query: 102 GDGRGGESIFGES-------FADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVI-TS 152
           G G GGESI+ +        F  E    LKH+  G +SM NAG + NGSQF+IT      
Sbjct: 55  GTGAGGESIYSQLYGRQARFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLD 114

Query: 153 WLDGRHVVFGKVLSGMDVVRKI 174
           +LDG+H VFG+V+ G DV+ KI
Sbjct: 115 YLDGKHTVFGQVVEGFDVLEKI 136

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score =  104 bits (260), Expect = 1e-27
 Identities = 61/175 (34%), Positives = 89/175 (50%), Gaps = 7/175 (4%)

Query: 25  EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGS 83
           E+ + + + DI +G    GR+V  LF   VP+TVENFRAL TG  GI   +G  L Y  +
Sbjct: 49  EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYT 108

Query: 84  SFHRIIPSFMIQGGDFTLGDGRG-GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGS 142
             H +            LG+      S  G   ADE ++ +HT  G+L+M + GP T+GS
Sbjct: 109 PVHHVDR----NNNIIVLGELDSFNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGS 164

Query: 143 QFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEA-EGRQSGEPKSKVVISNSGEM 196
            F IT   +  LD + VVFGK +  + ++ K+E+      G P   V +S  G +
Sbjct: 165 VFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGAL 219

Length = 249

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 83.3 bits (206), Expect = 2e-20
 Identities = 53/141 (37%), Positives = 68/141 (48%), Gaps = 23/141 (16%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFT-- 100
           G IV+ L+    P TVENF A     KG        +Y  + FHR+I  F+IQGG FT  
Sbjct: 7   GDIVVELYDDKAPITVENFLAYV--RKG--------FYDNTIFHRVISGFVIQGGGFTPD 56

Query: 101 LGDGRGGESIFGESFADENFKLKHTGPGVLSMA-NAGPDTNGSQFFITTVITSWLD---- 155
           L      + I  E+       L +T  G ++MA    PD+  SQFFI     + LD    
Sbjct: 57  LAQKETLKPIKNEA----GNGLSNTR-GTIAMARTNAPDSATSQFFINLKDNASLDYQNE 111

Query: 156 -GRHVVFGKVLSGMDVVRKIE 175
              + VFG+V  GMDVV KI 
Sbjct: 112 QWGYTVFGEVTEGMDVVDKIA 132

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 72.2 bits (177), Expect = 3e-16
 Identities = 57/166 (34%), Positives = 78/166 (46%), Gaps = 31/166 (18%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G IV+  F    P+TV+NF   C       + G   +Y  + FHR+I  FMIQGG F  G
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC-------REG---FYNNTIFHRVINGFMIQGGGFEPG 58

Query: 103 DGRGG--ESIFGESFADENFKLKHTGPGVLSMANAG-PDTNGSQFFITTVITSWLDGR-- 157
             +    E I  E+    N  LK+T  G L+MA    P +  +QFFI  V   +L+    
Sbjct: 59  MKQKATKEPIKNEA----NNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113

Query: 158 ------HVVFGKVLSGMDVVRKIEA-----EGRQSGEPKSKVVISN 192
                 + VF +V+ GMDVV KI+       G     PK  V+I +
Sbjct: 114 SLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIES 159

Length = 164

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 71.0 bits (174), Expect = 2e-15
 Identities = 51/140 (36%), Positives = 70/140 (50%), Gaps = 23/140 (16%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFT-- 100
           G I + L  +  P +V+NF            SG   +Y  ++FHR+IP FMIQGG FT  
Sbjct: 38  GNIELELNSQKAPVSVKNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQ 87

Query: 101 LGDGRGGESIFGESFADENFKLKHTGPGVLSMA-NAGPDTNGSQFFITTVITSWLD-GR- 157
           +   +    I  E  AD   +      G ++MA  A  D+  SQFFI     ++LD G+ 
Sbjct: 88  MQQKKPNPPIKNE--ADNGLRNTR---GTIAMARTADKDSATSQFFINVADNAFLDHGQR 142

Query: 158 ---HVVFGKVLSGMDVVRKI 174
              + VFGKV+ GMDV  KI
Sbjct: 143 DFGYAVFGKVVKGMDVADKI 162

Length = 190

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 52.4 bits (126), Expect = 9e-09
 Identities = 48/167 (28%), Positives = 68/167 (40%), Gaps = 46/167 (27%)

Query: 44  RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGD----- 98
            IV  L G   P T  NF  L   E+G        +Y G  FHR+   F++Q GD     
Sbjct: 10  TIV--LDGYNAPVTAGNFVDLV--ERG--------FYDGMEFHRVEGGFVVQTGDPQGKN 57

Query: 99  FTLGDGRGGES---------------IFGESFA-----DENFKLKHTGPGVLSMANAGPD 138
               D   G+S               ++G++       DE   L     G ++MA    D
Sbjct: 58  PGFPDPETGKSRTIPLEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFD 117

Query: 139 TNG--SQFFI-------TTVITSWLDGRHVVFGKVLSGMDVVRKIEA 176
            N   SQFF        T    + LDGR+ VFG V  G+D++R+++ 
Sbjct: 118 PNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKV 164

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	100.0
KOG0880	217	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
KOG0879	177	consensus U-snRNP-associated cyclophilin type pept	100.0
PTZ00221	249	cyclophilin; Provisional	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
KOG0881	164	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
KOG0111	298	consensus Cyclophilin-type peptidyl-prolyl cis-tra	100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	100.0
KOG0884	161	consensus Similar to cyclophilin-type peptidyl-pro	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
KOG0865	167	consensus Cyclophilin type peptidyl-prolyl cis-tra	100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
KOG0885	439	consensus Peptidyl-prolyl cis-trans isomerase [Pos	100.0
KOG0415	479	consensus Predicted peptidyl prolyl cis-trans isom	100.0
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.85
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	97.17
PRK00969	508	hypothetical protein; Provisional	97.16
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	96.72
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	96.62
PRK00969	508	hypothetical protein; Provisional	96.16
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	95.55
PF12903	147	DUF3830: Protein of unknown function (DUF3830); In	95.34

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.8e-56  Score=375.68  Aligned_cols=171  Identities=63%  Similarity=1.062  Sum_probs=163.5

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCC-CCCCCcccccCCEEEEeecCceEEecCCcCCCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGI-GKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGR  105 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~-~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~  105 (198)
                      .+++|||||+|++.+.|||+||||.|.||+||+||..||+|..|. ..+|+.+.|+|+.||||+++|||||||++.++|.
T Consensus         7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt   86 (372)
T KOG0546|consen    7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT   86 (372)
T ss_pred             CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence            478999999999999999999999999999999999999999985 3679999999999999999999999999999999


Q ss_pred             CCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCc
Q 029122          106 GGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEP  184 (198)
Q Consensus       106 ~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P  184 (198)
                      ||++|||..|+||++.++|+++++||||+.||++||||||||+.+.||||+.|+|||+||+|++|++.|+... +++.+|
T Consensus        87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP  166 (372)
T KOG0546|consen   87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKP  166 (372)
T ss_pred             CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999654 455699


Q ss_pred             ccceEEeeeeeec
Q 029122          185 KSKVVISNSGEMA  197 (198)
Q Consensus       185 ~~~i~I~~cg~l~  197 (198)
                      ..+|.|.+||+|.
T Consensus       167 ~~dV~I~dCGel~  179 (372)
T KOG0546|consen  167 LADVVISDCGELV  179 (372)
T ss_pred             ccceEeccccccc
Confidence            9999999999985

>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.1e-55  Score=339.13  Aligned_cols=171  Identities=74%  Similarity=1.224  Sum_probs=162.5

Q ss_pred             cccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhc-CCCCCCCCCCcccccCCEEEEeecCceEEecCC
Q 029122           21 REELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCT-GEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDF   99 (198)
Q Consensus        21 ~~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~-g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~   99 (198)
                      .+..|+++++|||||++.+...|||+|+||++.+|+||+||.+||. +.++.+       |.|++||||+|||+|||||.
T Consensus        32 ~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQGGd~  104 (217)
T KOG0880|consen   32 YEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQGGDF  104 (217)
T ss_pred             cCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceeecCcc
Confidence            3778899999999999999999999999999999999999999999 666554       99999999999999999999


Q ss_pred             cCCCCCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHh-CC
Q 029122          100 TLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEA-EG  178 (198)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~-~~  178 (198)
                      ..+++.++.++||+.+++|++.++|+++|.|||++.||++||||||||+...++||++|+|||||++|||+|.+|+. ..
T Consensus       105 t~g~gtGg~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~T  184 (217)
T KOG0880|consen  105 TKGDGTGGKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKT  184 (217)
T ss_pred             ccCCCCCCeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhhHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999995 45


Q ss_pred             CCCCCcccceEEeeeeeecC
Q 029122          179 RQSGEPKSKVVISNSGEMAL  198 (198)
Q Consensus       179 ~~~~~P~~~i~I~~cg~l~~  198 (198)
                      +++++|.++++|.+||.|+.
T Consensus       185 D~~dkP~e~v~I~~~g~l~~  204 (217)
T KOG0880|consen  185 DERDKPLEDVVIANCGELPV  204 (217)
T ss_pred             CCCCCccccEEEeecCcccc
Confidence            77899999999999999863

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=1.2e-49  Score=315.36  Aligned_cols=169  Identities=65%  Similarity=1.083  Sum_probs=157.0

Q ss_pred             CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCC
Q 029122           28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG  107 (198)
Q Consensus        28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~  107 (198)
                      +++||||+++++++.|+|+||||.+.||++|+||++||++.+.+ ..|+..||+++.||||+|+++||+||+..+.+.++
T Consensus        15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~-~~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g~~g   93 (183)
T PTZ00060         15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVG-SSGKNLHYKGSIFHRIIPQFMCQGGDITNHNGTGG   93 (183)
T ss_pred             CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCccc-ccCcccccCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence            67899999999999999999999999999999999999876542 24567799999999999999999999887778888


Q ss_pred             ccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCcccc
Q 029122          108 ESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSK  187 (198)
Q Consensus       108 ~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~~  187 (198)
                      .++++..+++|...++|.++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|++.++++++|+++
T Consensus        94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~  173 (183)
T PTZ00060         94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKP  173 (183)
T ss_pred             CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCC
Confidence            88889899999888999999999999999999999999999999999999999999999999999999888888999999


Q ss_pred             eEEeeeeeec
Q 029122          188 VVISNSGEMA  197 (198)
Q Consensus       188 i~I~~cg~l~  197 (198)
                      |+|.+||+|.
T Consensus       174 v~I~~cg~~~  183 (183)
T PTZ00060        174 VVVTDCGELQ  183 (183)
T ss_pred             eEEEEeEEcC
Confidence            9999999983

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=1.1e-49  Score=310.82  Aligned_cols=164  Identities=74%  Similarity=1.259  Sum_probs=152.1

Q ss_pred             cEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCc
Q 029122           29 HKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGE  108 (198)
Q Consensus        29 ~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~  108 (198)
                      |+||||+.++++++|+|+||||.+.||++|+||++||++.+|++.  +..||+++.||||+|+++||+||+..+++.++.
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~   78 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNGTGGK   78 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCCCCCC
Confidence            579999999999999999999999999999999999987665432  445899999999999999999998777778888


Q ss_pred             cccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCcccce
Q 029122          109 SIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKV  188 (198)
Q Consensus       109 ~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~~i  188 (198)
                      ++++..+++|...++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|+..++++++|+++|
T Consensus        79 ~~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i  158 (164)
T cd01926          79 SIYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKV  158 (164)
T ss_pred             cccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCe
Confidence            88999999998889999999999999999999999999999999999999999999999999999998777788999999


Q ss_pred             EEeeee
Q 029122          189 VISNSG  194 (198)
Q Consensus       189 ~I~~cg  194 (198)
                      +|.+||
T Consensus       159 ~I~~cG  164 (164)
T cd01926         159 VIADCG  164 (164)
T ss_pred             EEEECC
Confidence            999998

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-48  Score=285.91  Aligned_cols=173  Identities=57%  Similarity=0.975  Sum_probs=162.3

Q ss_pred             ccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcC
Q 029122           22 EELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTL  101 (198)
Q Consensus        22 ~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~  101 (198)
                      ...++.++-||||+++++.++|||.||||.|.+|++++||.+.|+|+--  +.|+..-|++++||||+++|+|||||..+
T Consensus         4 ~~r~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~   81 (177)
T KOG0879|consen    4 QLRSPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVN   81 (177)
T ss_pred             cccCCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceec
Confidence            3455668999999999999999999999999999999999999998742  55677779999999999999999999999


Q ss_pred             CCCCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC-C
Q 029122          102 GDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-Q  180 (198)
Q Consensus       102 ~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~-~  180 (198)
                      +++.+-.++|+..+++|++.++|+.+|+|||+++|+++++.|||||...+.+||++|+|||||++|+.++++|+.+++ .
T Consensus        82 gDGtG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~  161 (177)
T KOG0879|consen   82 GDGTGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGP  161 (177)
T ss_pred             CCCceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998775 6


Q ss_pred             CCCcccceEEeeeeee
Q 029122          181 SGEPKSKVVISNSGEM  196 (198)
Q Consensus       181 ~~~P~~~i~I~~cg~l  196 (198)
                      |++|+.+|.|..||++
T Consensus       162 NnkPKl~v~i~qCGem  177 (177)
T KOG0879|consen  162 NNKPKLPVVIVQCGEM  177 (177)
T ss_pred             CCCCCCcEEEeecccC
Confidence            7899999999999975

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=2.2e-47  Score=312.83  Aligned_cols=170  Identities=36%  Similarity=0.545  Sum_probs=153.4

Q ss_pred             ccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCC-CCCcccccCCEEEEeecC-ceEEecCCcC
Q 029122           24 LEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGSSFHRIIPS-FMIQGGDFTL  101 (198)
Q Consensus        24 ~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~-~~~~~~Y~g~~f~rv~~~-~~iq~Gd~~~  101 (198)
                      .+..+++||||+.+++++.|+|+||||.+.||++|+||++||+|..+.+. .|+..+|+++.||||+++ ++||+||+..
T Consensus        48 ~~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~  127 (249)
T PTZ00221         48 EEQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS  127 (249)
T ss_pred             cCCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC
Confidence            45678899999999999999999999999999999999999998876432 355567999999999986 8999999863


Q ss_pred             CCCCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CC
Q 029122          102 GDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQ  180 (198)
Q Consensus       102 ~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~  180 (198)
                          .+.+++|..+++|+..++|+++|+|+|++.++++++||||||+.++|+||++|+|||||++|||||++|+..+ ++
T Consensus       128 ----~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~  203 (249)
T PTZ00221        128 ----FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDD  203 (249)
T ss_pred             ----CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCC
Confidence                2345678899999989999999999999999999999999999999999999999999999999999999775 56


Q ss_pred             CCCcccceEEeeeeeec
Q 029122          181 SGEPKSKVVISNSGEMA  197 (198)
Q Consensus       181 ~~~P~~~i~I~~cg~l~  197 (198)
                      +++|+++|+|.+||+|+
T Consensus       204 ~grP~~~V~I~~Cgvl~  220 (249)
T PTZ00221        204 VGRPLLPVTVSFCGALT  220 (249)
T ss_pred             CCCCCCCeEEEECeEec
Confidence            78999999999999986

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=2.5e-47  Score=302.70  Aligned_cols=167  Identities=59%  Similarity=1.006  Sum_probs=151.2

Q ss_pred             CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCC
Q 029122           28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG  107 (198)
Q Consensus        28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~  107 (198)
                      .++||||+.+++++.|+|+||||.+.||++|+||++||++...  ..|....|+++.||||+|+++||+||+..+++.++
T Consensus        18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~--~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~   95 (186)
T PLN03149         18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFR--KAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGC   95 (186)
T ss_pred             CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhcc--ccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCc
Confidence            4679999999999999999999999999999999999986531  12222349999999999999999999877788888


Q ss_pred             ccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEE-cCHHHHHHHHhCCC-CCCCcc
Q 029122          108 ESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIEAEGR-QSGEPK  185 (198)
Q Consensus       108 ~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~~-~~~~P~  185 (198)
                      .++++..+++|....+|+++|+|+|++.++++++|||||++.++|+||++|+|||||+ +|||||++|++.++ ++++|+
T Consensus        96 ~~~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~  175 (186)
T PLN03149         96 VSIYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPK  175 (186)
T ss_pred             ccccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCc
Confidence            8889999999988889999999999999999999999999999999999999999999 79999999997765 678999


Q ss_pred             cceEEeeeeee
Q 029122          186 SKVVISNSGEM  196 (198)
Q Consensus       186 ~~i~I~~cg~l  196 (198)
                      ++|+|.+||++
T Consensus       176 ~~i~I~~cG~~  186 (186)
T PLN03149        176 LACVISECGEM  186 (186)
T ss_pred             CCeEEEeCEeC
Confidence            99999999985

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=3.4e-44  Score=278.58  Aligned_cols=147  Identities=48%  Similarity=0.822  Sum_probs=135.8

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |+.|+|+||||++.||++|+||++||+.+          ||+++.||||+|+++||+||+. +++.++.++++..+++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~   74 (159)
T cd01923           6 TNKGDLNLELHCDKAPKACENFIKLCKKG----------YYDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEF   74 (159)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHhcC----------ccCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCccc
Confidence            78999999999999999999999999643          8999999999999999999986 667788888899998885


Q ss_pred             c-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCcccceEEeeeeeec
Q 029122          120 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISNSGEMA  197 (198)
Q Consensus       120 ~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P~~~i~I~~cg~l~  197 (198)
                      . .++|+++|+|+|+++++++++|||||+++++|+||++|+|||||++|||+|++|+..+ +++++|+++|+|.+|+++.
T Consensus        75 ~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~  154 (159)
T cd01923          75 KPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFV  154 (159)
T ss_pred             ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEe
Confidence            4 6789899999999999999999999999999999999999999999999999999765 4678999999999999975

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-45  Score=269.06  Aligned_cols=153  Identities=51%  Similarity=0.905  Sum_probs=141.7

Q ss_pred             CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCC
Q 029122           28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG  107 (198)
Q Consensus        28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~  107 (198)
                      .+.|+++     |++|.|++|||-+.||++|+||.+|++  +|        ||+|+.||||+++|+||||||+ +.++++
T Consensus         9 ~~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLar--rg--------YYn~v~FHRii~DFmiQGGDPT-GTGRGG   72 (164)
T KOG0881|consen    9 PPNVTLE-----TSMGKITLELYWKHAPRTCQNFAELAR--RG--------YYNGVIFHRIIKDFMIQGGDPT-GTGRGG   72 (164)
T ss_pred             CCeEEEe-----ecccceehhhhhhcCcHHHHHHHHHHh--cc--------cccceeeeehhhhheeecCCCC-CCCCCc
Confidence            4678888     899999999999999999999999994  33        9999999999999999999997 899999


Q ss_pred             ccccCCcccCccc-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhC-CCCCCCcc
Q 029122          108 ESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAE-GRQSGEPK  185 (198)
Q Consensus       108 ~~~~~~~~~~e~~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~-~~~~~~P~  185 (198)
                      .++||..|++|-. .++|..+|.|||++.||++++|||||||.+.++||++|++||||+.||+|+.++..+ .+.++||+
T Consensus        73 aSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi  152 (164)
T KOG0881|consen   73 ASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPI  152 (164)
T ss_pred             cccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCc
Confidence            9999999999865 689999999999999999999999999999999999999999999999999999955 45679999


Q ss_pred             cceEEeeeeee
Q 029122          186 SKVVISNSGEM  196 (198)
Q Consensus       186 ~~i~I~~cg~l  196 (198)
                      .+++|.++-.+
T Consensus       153 ~~~kIika~~~  163 (164)
T KOG0881|consen  153 DEVKIIKAYPS  163 (164)
T ss_pred             cceeeEeeecC
Confidence            99999987654

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=4.6e-44  Score=276.14  Aligned_cols=144  Identities=47%  Similarity=0.793  Sum_probs=132.9

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |+.|+|+||||++.||++|+||++||+++          ||+++.||||+|++++|+||+. +++.++.++++..+++|.
T Consensus         7 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~   75 (153)
T cd01928           7 TNLGDIKIELFCDDCPKACENFLALCASG----------YYNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEF   75 (153)
T ss_pred             EccccEEEEEcCCCCcHHHHHHHHHHhcC----------ccCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCcccccc
Confidence            88999999999999999999999999754          8999999999999999999986 667777888888899887


Q ss_pred             c-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCcccceEEeeee
Q 029122          120 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISNSG  194 (198)
Q Consensus       120 ~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P~~~i~I~~cg  194 (198)
                      . .++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||+|++|++.+ +++++|+.+|+|.+|.
T Consensus        76 ~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  152 (153)
T cd01928          76 RETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDVT  152 (153)
T ss_pred             ccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEeE
Confidence            5 5788899999999999999999999999999999999999999999999999999765 4678999999999984

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-44  Score=276.13  Aligned_cols=146  Identities=49%  Similarity=0.781  Sum_probs=129.5

Q ss_pred             CCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccC
Q 029122           38 GGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFAD  117 (198)
Q Consensus        38 ~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~  117 (198)
                      ..|+.|+|+||||++.||+||+||++||+.+          ||+|+.||||+|+|||||||+..+.+.+++   +.++++
T Consensus         4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~~g----------~Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~   70 (158)
T COG0652           4 LETNKGDITIELYPDKAPKTVANFLQLVKEG----------FYDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKD   70 (158)
T ss_pred             eeccCCCEEEEECCCcCcHHHHHHHHHHHcC----------CCCCceEEEeecCceeecCCCCCCCCCCCC---CCCCcc
Confidence            3488999999999999999999999999632          899999999999999999999977677776   478999


Q ss_pred             cccCcccCC--CeEEEeeecC-CCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCC-----CCCcccceE
Q 029122          118 ENFKLKHTG--PGVLSMANAG-PDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-----SGEPKSKVV  189 (198)
Q Consensus       118 e~~~~~~~~--~G~ls~~~~~-~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-----~~~P~~~i~  189 (198)
                      |+....|++  +|+||||+.+ |++++|||||++.+.|+||++|+|||+|++|||+|++|+...+.     .+.|..+++
T Consensus        71 E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~  150 (158)
T COG0652          71 ENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVK  150 (158)
T ss_pred             cccccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeE
Confidence            988777776  9999999988 99999999999999999999999999999999999999975433     356778888


Q ss_pred             Eeeeeee
Q 029122          190 ISNSGEM  196 (198)
Q Consensus       190 I~~cg~l  196 (198)
                      |.+..++
T Consensus       151 i~~~~~~  157 (158)
T COG0652         151 ILSVKIV  157 (158)
T ss_pred             Eeeeeee
Confidence            8887765

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=7e-44  Score=273.76  Aligned_cols=142  Identities=55%  Similarity=0.891  Sum_probs=131.5

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |++|+|+||||++.||++|+||++||+++          ||+++.||||+|++++|+||+. +++.++.++++..+++|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~   72 (148)
T cd01927           4 TTKGDIHIRLFPEEAPKTVENFTTHARNG----------YYNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEF   72 (148)
T ss_pred             eccccEEEEEeCCCCcHHHHHHHHHhhcC----------CcCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCcccccc
Confidence            78999999999999999999999999754          8999999999999999999986 677778888888898887


Q ss_pred             c-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCcccceEEee
Q 029122          120 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISN  192 (198)
Q Consensus       120 ~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P~~~i~I~~  192 (198)
                      . .++|.++|+|+|++.++++++|||||++++.|+||++|+|||||++|||+|++|+..+ +++++|+++|+|.+
T Consensus        73 ~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927          73 SPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             ccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            5 7889889999999999999999999999999999999999999999999999999766 46789999999985

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=6.8e-44  Score=273.20  Aligned_cols=142  Identities=52%  Similarity=0.906  Sum_probs=131.0

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |+.|+|+||||.+.||++|+||++||+.+          ||+++.||||+|++++|+||+. +++.++.++++..+++|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~   72 (146)
T cd01922           4 TTMGEITLELYWNHAPKTCKNFYELAKRG----------YYNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEI   72 (146)
T ss_pred             eccccEEEEEcCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCccccc
Confidence            78999999999999999999999999644          8999999999999999999986 566777788888888884


Q ss_pred             -cCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCcccceEEee
Q 029122          120 -FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISN  192 (198)
Q Consensus       120 -~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~~i~I~~  192 (198)
                       ..++|.++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|+..++++++|.++|+|.+
T Consensus        73 ~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~~  146 (146)
T cd01922          73 HPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKILK  146 (146)
T ss_pred             ccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEeC
Confidence             4788989999999999999999999999999999999999999999999999999987776889999999974

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=4.2e-43  Score=279.23  Aligned_cols=176  Identities=30%  Similarity=0.417  Sum_probs=139.0

Q ss_pred             hHHHHHHHHHHHhccCccccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCC
Q 029122            4 KTRLVSVALLWALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGS   83 (198)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~   83 (198)
                      +++++++++++..+..+....++-+.+|.++     |+.|+|+||||++.||++|+||++||+.+          ||||+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Ydg~   68 (190)
T PRK10903          4 STLAAMAAVFALSALSPAALAAKGDPHVLLT-----TSAGNIELELNSQKAPVSVKNFVDYVNSG----------FYNNT   68 (190)
T ss_pred             HHHHHHHHHHHHhhccccccccCCCcEEEEE-----eccccEEEEEeCCCCcHHHHHHHHHHhcC----------CcCCc
Confidence            4444444444322333333355566677776     78999999999999999999999999643          89999


Q ss_pred             EEEEeecCceEEecCCcCCCCCCCccccCCcccCcccCcccCCCeEEEeeecC-CCCCCceEEEEccCCcCCCC-----C
Q 029122           84 SFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAG-PDTNGSQFFITTVITSWLDG-----R  157 (198)
Q Consensus        84 ~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~-~~~~~sqF~Itl~~~~~ld~-----~  157 (198)
                      .||||+|+|++|||++....+.   ..++.++++|.....|+.+|+|+|++.+ +++++|||||++++.++||+     +
T Consensus        69 ~FhRvi~~f~iQgG~~~~~~~~---~~~~~~~~~e~~~~l~~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~  145 (190)
T PRK10903         69 TFHRVIPGFMIQGGGFTEQMQQ---KKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFG  145 (190)
T ss_pred             EEEEEeCCceEEeCCcCCCCCC---CCCCCcccCcccccCcCCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCC
Confidence            9999999999999997643221   2235567777555556789999999864 89999999999999999984     8


Q ss_pred             ceEEEEEEcCHHHHHHHHhCCCC-----CCCcccceEEeeeeeec
Q 029122          158 HVVFGKVLSGMDVVRKIEAEGRQ-----SGEPKSKVVISNSGEMA  197 (198)
Q Consensus       158 ~~vfG~Vi~G~~vl~~I~~~~~~-----~~~P~~~i~I~~cg~l~  197 (198)
                      |+|||||++|||||++|+..+++     +++|.++|+|.+|+++.
T Consensus       146 ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~~  190 (190)
T PRK10903        146 YAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVLP  190 (190)
T ss_pred             ccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEeC
Confidence            99999999999999999976653     36999999999999873

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=3.7e-43  Score=274.52  Aligned_cols=147  Identities=39%  Similarity=0.656  Sum_probs=130.0

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccC-------
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFG-------  112 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~-------  112 (198)
                      |+.|+|+||||++.||++|+||++||+++          ||+++.||||+|+++||+||+. +++.++.++++       
T Consensus         4 Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~   72 (166)
T cd01921           4 TTLGDLVIDLFTDECPLACLNFLKLCKLK----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQA   72 (166)
T ss_pred             eccCCEEEEEcCCCCCHHHHHHHHHHhcC----------CcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccC
Confidence            78999999999999999999999999754          8999999999999999999986 55666665553       


Q ss_pred             CcccCcc-cCcccCCCeEEEeeecCCCCCCceEEEEccC-CcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCcccceE
Q 029122          113 ESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVI-TSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVV  189 (198)
Q Consensus       113 ~~~~~e~-~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~-~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P~~~i~  189 (198)
                      ..+++|. ..++|+++|+|+|++.++++++|||||++++ .|+||++|+|||||++|||||++|+..+ +++++|+++|+
T Consensus        73 ~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~  152 (166)
T cd01921          73 RFFEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIR  152 (166)
T ss_pred             cccCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeE
Confidence            2455554 3678989999999999999999999999975 8999999999999999999999999655 46789999999


Q ss_pred             Eeeeeeec
Q 029122          190 ISNSGEMA  197 (198)
Q Consensus       190 I~~cg~l~  197 (198)
                      |.+|++|+
T Consensus       153 I~~~~i~~  160 (166)
T cd01921         153 IKHTHILD  160 (166)
T ss_pred             EEEEEEEC
Confidence            99999985

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.2e-44  Score=282.14  Aligned_cols=167  Identities=62%  Similarity=1.043  Sum_probs=161.6

Q ss_pred             ccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCC
Q 029122           24 LEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGD  103 (198)
Q Consensus        24 ~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~  103 (198)
                      +...+++||+|+.+.+...|||+++|..|..|.+++||..||++++|.+       |.|++||||+|.|++||||.++++
T Consensus       132 aa~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~n  204 (298)
T KOG0111|consen  132 AAMENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGN  204 (298)
T ss_pred             hhhhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCC
Confidence            4456788999999999999999999999999999999999999999876       999999999999999999999999


Q ss_pred             CCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCC
Q 029122          104 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE  183 (198)
Q Consensus       104 ~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~  183 (198)
                      +.++.++||..+.+|++.++|..+|+|||+++|++++||||||+.....+||++|+|||.|++||+|+++++..+++.++
T Consensus       205 gtggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgk  284 (298)
T KOG0111|consen  205 GTGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGK  284 (298)
T ss_pred             CCCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceEEeeeeeec
Q 029122          184 PKSKVVISNSGEMA  197 (198)
Q Consensus       184 P~~~i~I~~cg~l~  197 (198)
                      |.+.|+|.+||++.
T Consensus       285 p~qkv~i~~cge~~  298 (298)
T KOG0111|consen  285 PQQKVKIVECGEIE  298 (298)
T ss_pred             cceEEEEEeccccC
Confidence            99999999999874

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=1.2e-41  Score=267.12  Aligned_cols=157  Identities=39%  Similarity=0.668  Sum_probs=140.9

Q ss_pred             cccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCC
Q 029122           25 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDG  104 (198)
Q Consensus        25 ~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~  104 (198)
                      |+.+.+|.++     |++|+|+||||++.||++|+||++||+.+          ||+++.||||+|+++||+||+. +++
T Consensus         2 ~~~~~~v~i~-----Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g   65 (171)
T cd01925           2 PPTTGKVILK-----TTAGDIDIELWSKEAPKACRNFIQLCLEG----------YYDNTIFHRVVPGFIIQGGDPT-GTG   65 (171)
T ss_pred             CCcccEEEEE-----EccccEEEEEeCCCChHHHHHHHHHHhcC----------CCCCCEEEEEcCCcEEEccccC-CCC
Confidence            5566778887     89999999999999999999999999644          8999999999999999999986 667


Q ss_pred             CCCccccCCcccCccc-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEE-cCHHHHHHHHhCC-CCC
Q 029122          105 RGGESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIEAEG-RQS  181 (198)
Q Consensus       105 ~~~~~~~~~~~~~e~~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~~-~~~  181 (198)
                      .++.++++..+++|.. .++|+++|+|+|++.++++++|||||++++.|+||++|+|||||+ ++++++++|+... +++
T Consensus        66 ~g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~  145 (171)
T cd01925          66 TGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKD  145 (171)
T ss_pred             ccCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCC
Confidence            7888888988988865 577889999999999999999999999999999999999999999 4688899999654 467


Q ss_pred             CCcccceEEeeeeeec
Q 029122          182 GEPKSKVVISNSGEMA  197 (198)
Q Consensus       182 ~~P~~~i~I~~cg~l~  197 (198)
                      ++|.++|+|.+|++++
T Consensus       146 ~~P~~~i~I~~~~i~~  161 (171)
T cd01925         146 ERPVYPPKITSVEVLE  161 (171)
T ss_pred             CCcCCCeEEEEEEEEc
Confidence            8999999999999875

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=5e-40  Score=256.17  Aligned_cols=144  Identities=35%  Similarity=0.581  Sum_probs=120.8

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |+.|+|+|+||++.||++|+||++||+.+          ||+++.||||+|+|+||||++..+.+.   ..++..+++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Yd~~~fhRvi~~f~iQgGd~~~~~~~---~~~~~~~~~e~   72 (164)
T PRK10791          6 TNHGDIVIKTFDDKAPETVKNFLDYCREG----------FYNNTIFHRVINGFMIQGGGFEPGMKQ---KATKEPIKNEA   72 (164)
T ss_pred             EccccEEEEEeCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEecCcEEEeCCcCCCCCc---CCCCCCcCCcc
Confidence            88999999999999999999999999654          899999999999999999997543322   12345666664


Q ss_pred             cCcccCCCeEEEeeecC-CCCCCceEEEEccCCcCCC-------C-CceEEEEEEcCHHHHHHHHhCCCC-----CCCcc
Q 029122          120 FKLKHTGPGVLSMANAG-PDTNGSQFFITTVITSWLD-------G-RHVVFGKVLSGMDVVRKIEAEGRQ-----SGEPK  185 (198)
Q Consensus       120 ~~~~~~~~G~ls~~~~~-~~~~~sqF~Itl~~~~~ld-------~-~~~vfG~Vi~G~~vl~~I~~~~~~-----~~~P~  185 (198)
                      ....++.+|+|+|++.+ +++++|||||++++.++||       + +|+|||||++|||||++|++.++.     +++|.
T Consensus        73 ~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~  152 (164)
T PRK10791         73 NNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPK  152 (164)
T ss_pred             cccccCCCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcC
Confidence            43334479999999875 8999999999999988776       3 699999999999999999976653     36999


Q ss_pred             cceEEeeeeee
Q 029122          186 SKVVISNSGEM  196 (198)
Q Consensus       186 ~~i~I~~cg~l  196 (198)
                      .+|+|.+|.+.
T Consensus       153 ~~v~I~~~~i~  163 (164)
T PRK10791        153 EDVIIESVTVS  163 (164)
T ss_pred             CCeEEEEEEEe
Confidence            99999999764

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.2e-41  Score=283.45  Aligned_cols=156  Identities=46%  Similarity=0.792  Sum_probs=142.1

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG  106 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~  106 (198)
                      ++++-|+.+.   |+.|.|.+||++|.+|.+|+||++||..  |        ||+|+.|||.+.|||||||||+ +.|.|
T Consensus       274 vKkkgyvrl~---Tn~G~lNlELhcd~~P~aceNFI~lc~~--g--------YYnnt~FHRsIrnFmiQGGDPT-GTG~G  339 (518)
T KOG0883|consen  274 VKKKGYVRLV---TNHGPLNLELHCDYAPRACENFITLCKN--G--------YYNNTIFHRSIRNFMIQGGDPT-GTGRG  339 (518)
T ss_pred             ccccceEEEe---ccCCceeeEeecCcchHHHHHHHHHHhc--c--------cccchHHHHHHHHHeeeCCCCC-CCCCC
Confidence            3444566664   5699999999999999999999999943  3        9999999999999999999997 99999


Q ss_pred             CccccCCcccCccc-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCc
Q 029122          107 GESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEP  184 (198)
Q Consensus       107 ~~~~~~~~~~~e~~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P  184 (198)
                      |+++||.+|.+|.. .+.|+.||+|||+++|++++||||||+.+++.+||++|+|||||+.|+++|++|+.++ +++++|
T Consensus       340 GeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGldtL~amEnve~d~~DrP  419 (518)
T KOG0883|consen  340 GESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGLDTLTAMENVETDEKDRP  419 (518)
T ss_pred             CccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccHHHHHHHhcCCCCCCCCc
Confidence            99999999999964 6999999999999999999999999999999999999999999999999999999765 567999


Q ss_pred             ccceEEeeeeee
Q 029122          185 KSKVVISNSGEM  196 (198)
Q Consensus       185 ~~~i~I~~cg~l  196 (198)
                      +.+|+|.+.-+.
T Consensus       420 ~e~I~i~~~~VF  431 (518)
T KOG0883|consen  420 KEEIKIEDAIVF  431 (518)
T ss_pred             ccceEEeeeEEe
Confidence            999999987653

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=2.8e-39  Score=250.02  Aligned_cols=141  Identities=36%  Similarity=0.527  Sum_probs=119.7

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |+.|+|+||||++.||++|+||++||+.+          ||+++.||||+|+++||+|++....+.   ..++..+++|.
T Consensus         4 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~   70 (155)
T cd01920           4 TSLGDIVVELYDDKAPITVENFLAYVRKG----------FYDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEA   70 (155)
T ss_pred             ecceeEEEEEeCCCCcHHHHHHHHHHhcC----------CCCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcc
Confidence            78999999999999999999999999643          899999999999999999998744322   12345666665


Q ss_pred             cCcccCCCeEEEeeecC-CCCCCceEEEEccCCcCCCC-----CceEEEEEEcCHHHHHHHHhCCCCC-----CCcccce
Q 029122          120 FKLKHTGPGVLSMANAG-PDTNGSQFFITTVITSWLDG-----RHVVFGKVLSGMDVVRKIEAEGRQS-----GEPKSKV  188 (198)
Q Consensus       120 ~~~~~~~~G~ls~~~~~-~~~~~sqF~Itl~~~~~ld~-----~~~vfG~Vi~G~~vl~~I~~~~~~~-----~~P~~~i  188 (198)
                      ....|+++|+|+|++.+ +++++|||||++++.|+||.     +|+|||||++|||||++|+..++++     ++|+.+|
T Consensus        71 ~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v  150 (155)
T cd01920          71 GNGLSNTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDV  150 (155)
T ss_pred             cccccCCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCe
Confidence            55556789999999864 89999999999999999995     7999999999999999999766543     5899999


Q ss_pred             EEeee
Q 029122          189 VISNS  193 (198)
Q Consensus       189 ~I~~c  193 (198)
                      +|.+.
T Consensus       151 ~i~~~  155 (155)
T cd01920         151 IIESA  155 (155)
T ss_pred             EEEEC
Confidence            99763

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=4.4e-39  Score=248.39  Aligned_cols=150  Identities=55%  Similarity=0.886  Sum_probs=129.3

Q ss_pred             EEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCc-cc
Q 029122           32 YFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGE-SI  110 (198)
Q Consensus        32 ~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~-~~  110 (198)
                      |++|.+++  +|+|+||||++.||++|+||++||+.+          +|+++.|||++|+++||+|++......+.. ..
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~----------~y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~   68 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSG----------FYDGTKFHRIIPNFVIQGGDPTGNGGYGREDST   68 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTT----------SSTTEBEEEEETTTEEEESSTTTSSSSTSEEBT
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhccc----------ccCCceeecccccceeeeeeccCCCCccccccc
Confidence            78888866  999999999999999999999999744          799999999999999999998754331111 22


Q ss_pred             cCCcccCccc--CcccCCCeEEEeeecC--CCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCccc
Q 029122          111 FGESFADENF--KLKHTGPGVLSMANAG--PDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS  186 (198)
Q Consensus       111 ~~~~~~~e~~--~~~~~~~G~ls~~~~~--~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~  186 (198)
                      .+..+++|..  .+.| ++|+|+|++.+  +++++|||||+|++.++||++|+|||+|++||++|++|++.++++ +|.+
T Consensus        69 ~~~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~  146 (155)
T PF00160_consen   69 GGEPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQ  146 (155)
T ss_dssp             TBSCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSS
T ss_pred             Cccccccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCC
Confidence            3445777773  3455 89999999975  788999999999999999999999999999999999999887777 9999


Q ss_pred             ceEEeeeee
Q 029122          187 KVVISNSGE  195 (198)
Q Consensus       187 ~i~I~~cg~  195 (198)
                      +|+|.+||+
T Consensus       147 ~v~I~~cgv  155 (155)
T PF00160_consen  147 DVTISSCGV  155 (155)
T ss_dssp             TEEEEEEEE
T ss_pred             CeEEEEeEC
Confidence            999999996

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.8e-40  Score=280.19  Aligned_cols=144  Identities=53%  Similarity=0.865  Sum_probs=135.8

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |+.|+|.|.||+++||++|+||...|+.+          ||||..||||+++||||+|||. ++|.||+++||..+++|.
T Consensus       411 tt~gdi~~kl~p~ecpktvenf~th~rng----------yy~~~~fhriik~fmiqtgdp~-g~gtggesiwg~dfedef  479 (558)
T KOG0882|consen  411 TTQGDIHIKLYPEECPKTVENFTTHSRNG----------YYDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDFEDEF  479 (558)
T ss_pred             ecccceEEEecccccchhhhhhhccccCc----------cccCcchHHhhhhheeecCCCC-CCCCCCcccccccchhhc
Confidence            89999999999999999999999999543          9999999999999999999997 999999999999999997


Q ss_pred             c-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCcccceEEeeee
Q 029122          120 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISNSG  194 (198)
Q Consensus       120 ~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P~~~i~I~~cg  194 (198)
                      . .++|+++-+|||++.|+++||||||||+-+.|+||++|+|||||+.||||+++|+.+. ++++||.+++.|.+--
T Consensus       480 h~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iinis  556 (558)
T KOG0882|consen  480 HPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINIS  556 (558)
T ss_pred             CcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEEe
Confidence            6 6999999999999999999999999999999999999999999999999999999654 6679999999998753

>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.5e-39  Score=233.09  Aligned_cols=144  Identities=47%  Similarity=0.753  Sum_probs=133.3

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |..|+|.||||.+.+|++|+||+.+|..+          ||+++.|||-+|+|++|+|++. ..|.++.++||.++++|.
T Consensus         7 t~~gdikiev~~e~tpktce~~l~~~~~~----------~~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~   75 (161)
T KOG0884|consen    7 TDVGDIKIEVFCERTPKTCENFLALCASD----------YYNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEY   75 (161)
T ss_pred             eccCcEEEEEEecCChhHHHHHHHHhhhh----------hccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHH
Confidence            67899999999999999999999999654          8999999999999999999997 889999999999999997


Q ss_pred             c-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC--CCCCCcccceEEeeee
Q 029122          120 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG--RQSGEPKSKVVISNSG  194 (198)
Q Consensus       120 ~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~--~~~~~P~~~i~I~~cg  194 (198)
                      . -++|+.||++||+++||++++||||||.+.+||||-+|++||+||+|+|.|++|+..+  .+..||..++.|++..
T Consensus        76 ~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~it  153 (161)
T KOG0884|consen   76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDIT  153 (161)
T ss_pred             HHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeE
Confidence            6 5899999999999999999999999999999999999999999999999999999665  3347899998888754

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=2.6e-38  Score=241.94  Aligned_cols=141  Identities=60%  Similarity=0.937  Sum_probs=125.0

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |+.|+|+||||++.||++|+||++||+++          +|+++.|||++|++++|+|++......+  +.++..+++|.
T Consensus         4 T~~G~i~IeL~~~~~P~~~~nF~~l~~~~----------~Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~   71 (146)
T cd00317           4 TTKGRIVIELYGDEAPKTVENFLSLARGG----------FYDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDEN   71 (146)
T ss_pred             eccCcEEEEEcCCCChHHHHHHHHHHhcC----------CcCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCcc
Confidence            67899999999999999999999999755          7999999999999999999987543322  34567788887


Q ss_pred             cCcc-cCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC-CCCCcccceEEee
Q 029122          120 FKLK-HTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKSKVVISN  192 (198)
Q Consensus       120 ~~~~-~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~-~~~~P~~~i~I~~  192 (198)
                      .... |+++|+|+|++.++++++|||||++++.++||++|+|||||++|||+|++|+..++ ++++|.++|+|.+
T Consensus        72 ~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~  146 (146)
T cd00317          72 FPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTISD  146 (146)
T ss_pred             ccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEeC
Confidence            7655 88999999999999999999999999999999999999999999999999997665 5899999999974

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.5e-38  Score=242.99  Aligned_cols=163  Identities=64%  Similarity=1.151  Sum_probs=155.9

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEe---ecCceEEecCCcCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRI---IPSFMIQGGDFTLGD  103 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv---~~~~~iq~Gd~~~~~  103 (198)
                      .+++||||+.++++++|+++++||.|..|++++||..||++.+|.+       |.++.|||+   ++++++|+||...++
T Consensus         2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~hn   74 (167)
T KOG0865|consen    2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCHN   74 (167)
T ss_pred             CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCcccccC
Confidence            5789999999999999999999999999999999999999988765       999999993   447999999999999


Q ss_pred             CCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCC
Q 029122          104 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE  183 (198)
Q Consensus       104 ~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~  183 (198)
                      +.+++++|++.+++|+..++|..+|.|+|++.+|++++|||||++....+||++|+|||+|.+||+++++|+.....+++
T Consensus        75 gtggkSiy~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk  154 (167)
T KOG0865|consen   75 GTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGK  154 (167)
T ss_pred             CccceEecccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCc
Confidence            99999999999999999999999999999999999999999999998899999999999999999999999999999999


Q ss_pred             cccceEEeeeeee
Q 029122          184 PKSKVVISNSGEM  196 (198)
Q Consensus       184 P~~~i~I~~cg~l  196 (198)
                      |.++|.|.+||+|
T Consensus       155 ~~~~i~i~dcg~l  167 (167)
T KOG0865|consen  155 TSKKITIADCGQL  167 (167)
T ss_pred             ccccEEEecCCcC
Confidence            9999999999986

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=1.5e-36  Score=239.00  Aligned_cols=128  Identities=32%  Similarity=0.537  Sum_probs=107.8

Q ss_pred             CEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCC--------------
Q 029122           39 GKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDG--------------  104 (198)
Q Consensus        39 ~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~--------------  104 (198)
                      .|+.|+|+||||++.||++|+||++||+.+          ||+++.||||+|+|+|||||+.....              
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Ydg~~FhRVi~~fviQgGdp~~~~~~~~~~~~~~~~~~p   72 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLVERG----------FYDGMEFHRVEGGFVVQTGDPQGKNPGFPDPETGKSRTIP   72 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHHHhC----------CcCCCEEEEecCCcEEEecCCCCCCCCccccccccccccc
Confidence            478999999999999999999999999633          89999999999999999999864311              


Q ss_pred             ------CCCccccCCcc-----cCcccCcccCCCeEEEeeecC--CCCCCceEEEEcc-------CCcCCCCCceEEEEE
Q 029122          105 ------RGGESIFGESF-----ADENFKLKHTGPGVLSMANAG--PDTNGSQFFITTV-------ITSWLDGRHVVFGKV  164 (198)
Q Consensus       105 ------~~~~~~~~~~~-----~~e~~~~~~~~~G~ls~~~~~--~~~~~sqF~Itl~-------~~~~ld~~~~vfG~V  164 (198)
                            ..+.++++..+     .++...++|+.+|+|+|++.+  +++++|||||+++       +.|+||++|+|||||
T Consensus        73 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~V  152 (176)
T cd01924          73 LEIKPEGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYV  152 (176)
T ss_pred             ceecccCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEE
Confidence                  11223444433     244556778899999999987  6999999999998       789999999999999


Q ss_pred             EcCHHHHHHHHh
Q 029122          165 LSGMDVVRKIEA  176 (198)
Q Consensus       165 i~G~~vl~~I~~  176 (198)
                      ++|||||++|+.
T Consensus       153 veG~dvl~~I~~  164 (176)
T cd01924         153 TDGLDILRELKV  164 (176)
T ss_pred             ecCHHHHHhhcC
Confidence            999999999974

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.4e-36  Score=250.71  Aligned_cols=161  Identities=39%  Similarity=0.628  Sum_probs=144.7

Q ss_pred             cccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCc
Q 029122           21 REELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFT  100 (198)
Q Consensus        21 ~~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~  100 (198)
                      ....|+.+-+|.+.     |+.|+|.||||+.+||++|+||++||..+          ||+|+.|||++|+|++||||+.
T Consensus         5 ~~~EP~ttgkvil~-----TT~G~I~iELW~kE~P~acrnFiqKOGeg----------yy~nt~fhrlvp~f~~Qggdp~   69 (439)
T KOG0885|consen    5 YNLEPPTTGKVILK-----TTKGDIDIELWAKECPKACRNFIQLCLEG----------YYDNTEFHRLVPGFLVQGGDPT   69 (439)
T ss_pred             cccCCCccceEEEE-----eccCceeeeehhhhhhHHHHHHHHHHHhc----------cccCceeeeeccchhcccCCCC
Confidence            34557788888887     89999999999999999999999999644          9999999999999999999996


Q ss_pred             CCCCCCCccccCCcccCccc-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEE-cCHHHHHHHHhC-
Q 029122          101 LGDGRGGESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL-SGMDVVRKIEAE-  177 (198)
Q Consensus       101 ~~~~~~~~~~~~~~~~~e~~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi-~G~~vl~~I~~~-  177 (198)
                       ++|.||.++||.++.+|.+ ++++.++|+|+|++.+.+.||||||+||++.|+|+++|++||+|+ +-+-.+-+|..+ 
T Consensus        70 -~~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~e  148 (439)
T KOG0885|consen   70 -GTGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVE  148 (439)
T ss_pred             -CCCCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhhhcccc
Confidence             8999999999999999975 688899999999999999999999999999999999999999999 356666677744 


Q ss_pred             CCCCCCcccceEEeeeeeec
Q 029122          178 GRQSGEPKSKVVISNSGEMA  197 (198)
Q Consensus       178 ~~~~~~P~~~i~I~~cg~l~  197 (198)
                      .+.+.||..+-.|.+|.+|.
T Consensus       149 ida~~Rp~~p~kI~s~EV~~  168 (439)
T KOG0885|consen  149 IDADDRPVDPPKIKSVEVLI  168 (439)
T ss_pred             cccccCCCCccceeeeEeec
Confidence            56689999999999999874

>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-35  Score=247.73  Aligned_cols=148  Identities=43%  Similarity=0.655  Sum_probs=135.6

Q ss_pred             CEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCc----
Q 029122           39 GKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGES----  114 (198)
Q Consensus        39 ~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~----  114 (198)
                      +|++|+|+|+||.+.+|.+|.||++||          |..||+.|.||.|.++|.+|.|||+ +.|.||.++|+..    
T Consensus         6 eTtlGDlvIDLf~~erP~~clNFLKLC----------k~KYYN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q   74 (479)
T KOG0415|consen    6 ETTLGDLVIDLFVKERPRTCLNFLKLC----------KIKYYNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQ   74 (479)
T ss_pred             EeecccEEeeeecccCcHHHHHHHHHH----------hHhhcccceeeeccccceeecCCCC-CCCCCcceeeeeccccc
Confidence            389999999999999999999999999          4459999999999999999999998 7999999988644    


Q ss_pred             ---ccCc-ccCcccCCCeEEEeeecCCCCCCceEEEEccC-CcCCCCCceEEEEEEcCHHHHHHHH-hCCCCCCCcccce
Q 029122          115 ---FADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVI-TSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKV  188 (198)
Q Consensus       115 ---~~~e-~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~-~~~ld~~~~vfG~Vi~G~~vl~~I~-~~~~~~~~P~~~i  188 (198)
                         |..| .+.++|.+.|+|||++.|.+.+||||||||++ +..||++|+|||+|.+|+|+|.+|+ +..+.+++|.++|
T Consensus        75 ~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdI  154 (479)
T KOG0415|consen   75 ARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDI  154 (479)
T ss_pred             chhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhhhHHHHHHHHHHhcCCCCCcccce
Confidence               3444 34789999999999999999999999999987 6789999999999999999999999 7889999999999


Q ss_pred             EEeeeeeec
Q 029122          189 VISNSGEMA  197 (198)
Q Consensus       189 ~I~~cg~l~  197 (198)
                      +|++.-+|+
T Consensus       155 RI~HTiiLd  163 (479)
T KOG0415|consen  155 RIKHTIILD  163 (479)
T ss_pred             eeeeeEEec
Confidence            999998886

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=2.1e-05  Score=69.24  Aligned_cols=140  Identities=24%  Similarity=0.280  Sum_probs=107.1

Q ss_pred             EEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCc----cccC-CcccC-
Q 029122           44 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGE----SIFG-ESFAD-  117 (198)
Q Consensus        44 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~----~~~~-~~~~~-  117 (198)
                      -|.|+++.+-.|.-++.|.+.|.-.          |+++..|.+|.+.+++|.||.......+|.    +..+ ..+++ 
T Consensus       113 ~IAVs~~~sg~i~VvD~~~d~~q~~----------~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~  182 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFGDFCQDG----------YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT  182 (558)
T ss_pred             eEEeecccCCCcEEECCcCCcCccc----------eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccc
Confidence            8999999999999999999999433          899999999999999999987644332221    1111 11222 


Q ss_pred             -cccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhC-CCCCCCcccceEEeeee
Q 029122          118 -ENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAE-GRQSGEPKSKVVISNSG  194 (198)
Q Consensus       118 -e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~-~~~~~~P~~~i~I~~cg  194 (198)
                       .+..++| ..-++...+......+.+|++.-...+-+..+..|+|++.+|.++++.|... .+.+..|+.++.|.+..
T Consensus       183 ~l~~~~K~-eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve  260 (558)
T KOG0882|consen  183 NLNFELKH-ETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE  260 (558)
T ss_pred             cccccccc-cchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence             2345566 3556666665556668899999888999999999999999999999999854 45678899998887754

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=97.17  E-value=0.0021  Score=57.60  Aligned_cols=101  Identities=22%  Similarity=0.307  Sum_probs=65.3

Q ss_pred             eEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcccCc
Q 029122           43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKL  122 (198)
Q Consensus        43 G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~  122 (198)
                      =.+.+||.++ ||.++++|+.+.+.+.          +   .+.+.. +-+|           +.....+...+.|+...
T Consensus       201 Ty~evE~~~~-~p~s~EH~la~~~~G~----------~---~Vd~~t-sTfi-----------~d~~L~g~~~p~En~~~  254 (503)
T TIGR03268       201 TYVEVELDPN-APVSVEHFLALMEDGT----------F---RVDYRT-STFI-----------SDDSLRGLDKPEENIEK  254 (503)
T ss_pred             EEEEEEEcCC-CChhHHHHHHHHhCCe----------E---EEeeee-cceE-----------ecccccCccCCccccCc
Confidence            3577786554 5999999999985441          1   111111 1111           11122355566676543


Q ss_pred             ccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHH
Q 029122          123 KHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKI  174 (198)
Q Consensus       123 ~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I  174 (198)
                      +  .+|+|++.+.|..  ....||...+.+. .-.|+|+|||+.|||+++--
T Consensus       255 R--~rGtVTVRn~G~G--~G~VYIYredr~s-s~sHtvVG~V~~GiELid~a  301 (503)
T TIGR03268       255 R--RRGAVTVRNSGVG--EGRVYIYREDRPS-SLSHNVVGHVTRGIELIDIA  301 (503)
T ss_pred             c--cceeEEEEeeccC--ceeEEEEcCCCCC-CcccceeEEEecceeeeecc
Confidence            3  5899999998754  4568999877553 34699999999999998743

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=97.16  E-value=0.0018  Score=58.19  Aligned_cols=101  Identities=23%  Similarity=0.330  Sum_probs=65.7

Q ss_pred             eEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcccCc
Q 029122           43 GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKL  122 (198)
Q Consensus        43 G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~  122 (198)
                      =.+.+||.++ ||.++++|+.+.+.+.          +   .+.+.. +-+|.           .....+...+.|+...
T Consensus       204 Ty~eve~~~~-~p~s~EH~la~~~~G~----------f---~Vd~~t-stfI~-----------d~~L~g~~~p~En~~~  257 (508)
T PRK00969        204 TYVEVELDPG-APKSVEHFLALLEDGT----------F---EVDFET-STFIA-----------DDRLQGLKIPEENFEP  257 (508)
T ss_pred             EEEEEEEcCC-CCchHHHHHHHHhCCe----------E---EEeeee-cceEe-----------eccccCccCCccccCc
Confidence            3577787655 5999999999996441          1   111111 11111           1122355667776543


Q ss_pred             ccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHH
Q 029122          123 KHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKI  174 (198)
Q Consensus       123 ~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I  174 (198)
                      +  ++|+|++.+.|.+  ....||...+.+. .-.|+|+|+|+.|||+++--
T Consensus       258 R--~~GtVTVRt~G~g--~G~vYIyredr~s-s~sHtvVG~V~~GiELi~~a  304 (508)
T PRK00969        258 R--RRGTVTVRTAGVG--VGKVYIYREDRPS-SLSHTVVGRVTHGIELIDFA  304 (508)
T ss_pred             c--ccceEEEEeeccC--ceeEEEECCCCCC-CccceeEEEEecceeeeecc
Confidence            3  5899999998754  4578999877553 34699999999999998743

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.0065  Score=53.04  Aligned_cols=102  Identities=24%  Similarity=0.389  Sum_probs=67.0

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEe--ecCceEEecCCcCCCCCCCccccCCcccC
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRI--IPSFMIQGGDFTLGDGRGGESIFGESFAD  117 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv--~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~  117 (198)
                      .-+=.+.+||.++ +|+++++|+.|...+.                .||  ..|-++.           ..+......+.
T Consensus       200 rifTy~eve~s~n-sP~saEH~lalmedG~----------------lri~~~tntfis-----------~~~lq~~~~~~  251 (512)
T COG4070         200 RIFTYFEVELSRN-SPKSAEHFLALMEDGT----------------LRIDVTTNTFIS-----------DDTLQEEKVPE  251 (512)
T ss_pred             EEEEEEEEEeCCC-CchhHHHHHHHhhcce----------------EEEEEeccceee-----------ccccccccCCh
Confidence            3445678888665 5999999999984331                122  2222221           11223455677


Q ss_pred             cccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHH
Q 029122          118 ENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKI  174 (198)
Q Consensus       118 e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I  174 (198)
                      |+..++  .+|.++..+.|.+  ...-||.-.+.+. -..|.|+|||++|||+++--
T Consensus       252 en~d~R--erG~iTvRn~Gvg--eGrvYIyRedR~s-s~sHnvVGrV~eGiELid~a  303 (512)
T COG4070         252 ENFDLR--ERGAITVRNVGVG--EGRVYIYREDRPS-SLSHNVVGRVIEGIELIDLA  303 (512)
T ss_pred             hhhhhh--hcceEEEEeeecc--cceEEEEecCCCC-ccccceeeeeecceEEEEec
Confidence            776555  4899999987654  4578888766443 24689999999999998743

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=96.62  E-value=0.025  Score=50.85  Aligned_cols=113  Identities=20%  Similarity=0.346  Sum_probs=62.2

Q ss_pred             EEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcccCcc
Q 029122           44 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLK  123 (198)
Q Consensus        44 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~  123 (198)
                      =|.|+||.+.||.++..|.++. |-. +-.-|+      ..+|-..++.++.-|+..          +...+.+||.+-.
T Consensus       376 vi~IeLydd~AP~s~~yFRk~t-GL~-~~~VG~------L~v~F~~~d~~mFk~~~~----------~~k~LiPEN~P~~  437 (503)
T TIGR03268       376 VIEIELYDDNAPRSVWYFRKFT-GLK-TKPVGR------LPVHFAFKEMIMFKGNKE----------LAKGLIPENTPED  437 (503)
T ss_pred             EEEEEEcccCCchHHHHHHHhc-CCc-ccccce------eEEEEEeCCeeEeccCch----------hccccCCCCCCCC
Confidence            5889999999999999999986 111 001122      234444555444433322          1233444444333


Q ss_pred             cCCCeEEEeeecCCCCCCceEEEEc------cCCc-CCCCCceEEEEEEcCHHHHHHHHh
Q 029122          124 HTGPGVLSMANAGPDTNGSQFFITT------VITS-WLDGRHVVFGKVLSGMDVVRKIEA  176 (198)
Q Consensus       124 ~~~~G~ls~~~~~~~~~~sqF~Itl------~~~~-~ld~~~~vfG~Vi~G~~vl~~I~~  176 (198)
                      ...+|.+++-|......| -.-|-|      +|.. .+++ -.++|+|++++|.|+++..
T Consensus       438 ~V~ag~IgvTN~a~k~~G-~IGVRl~d~defGPTGE~F~g-TNIiG~Vv~~~e~Lk~~Ke  495 (503)
T TIGR03268       438 KVEAGVIGVTNQACKHVG-MIGVRLEDSDEFGPTGEPFSG-TNIIGRVVEGMERLKGLKE  495 (503)
T ss_pred             ccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-cceEEEecCChhHhccccc
Confidence            445677776653211100 112222      2332 2344 4577999999999988864

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>PRK00969 hypothetical protein; Provisional

Probab=96.16  E-value=0.065  Score=48.37  Aligned_cols=112  Identities=20%  Similarity=0.315  Sum_probs=62.3

Q ss_pred             EEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcccCcc
Q 029122           44 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLK  123 (198)
Q Consensus        44 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~~~  123 (198)
                      =|.|+||.+.||+++..|.++. |-. +-.-|+      ..+|-..++.++.-|+..          +...+.+||.+-.
T Consensus       379 vi~IeLydd~AP~s~~yFR~~t-GL~-~~~VG~------L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~~  440 (508)
T PRK00969        379 LIEIELYDDKAPRTVWYFRKVT-GLK-TKPVGK------LPVYFKYEDTYLFKGNIE----------YAKGLLPENTPED  440 (508)
T ss_pred             EEEEEEcCcCCchHHHHHHHhc-CCc-ccccce------eEEEEEeCCeEEEccChh----------hccccCCCCCCCC
Confidence            5889999999999999999986 111 001112      244445566555434332          1233444544433


Q ss_pred             cCCCeEEEeeecCCCCCCceEEEEc------cCCc-CCCCCceEEEEEEcCHHHHHHHHh
Q 029122          124 HTGPGVLSMANAGPDTNGSQFFITT------VITS-WLDGRHVVFGKVLSGMDVVRKIEA  176 (198)
Q Consensus       124 ~~~~G~ls~~~~~~~~~~sqF~Itl------~~~~-~ld~~~~vfG~Vi~G~~vl~~I~~  176 (198)
                      ...+|.+++-|......| -.-|-|      +|.. .+++ -.++|||+ ++|-|+++..
T Consensus       441 ~V~ag~IgvTN~a~k~~G-~iGVR~~d~d~fGPTGE~F~g-TNIIGrVv-~~e~Lk~lKe  497 (508)
T PRK00969        441 KVKAGEIGVTNMAAKYKG-MIGVRLSDNDEFGPTGEPFEG-TNIIGRVV-NLEKLKKLKE  497 (508)
T ss_pred             ccccceEeeechhhhcCc-eEEEEccCCcccCCCCCCccC-ceeEEEec-ChHHhccccc
Confidence            445677766653211100 112222      2332 2333 46789999 9999988864

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=95.55  E-value=0.072  Score=46.72  Aligned_cols=116  Identities=20%  Similarity=0.241  Sum_probs=57.8

Q ss_pred             EEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecC--ceEEecCCcCCCCCCCccccCCc-----cc
Q 029122           44 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPS--FMIQGGDFTLGDGRGGESIFGES-----FA  116 (198)
Q Consensus        44 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~--~~iq~Gd~~~~~~~~~~~~~~~~-----~~  116 (198)
                      =|.||||.+.||.++..|.++.. -.. ..-||      .+.|-..++  .+..-|+.....+...+..+.+.     +-
T Consensus       377 iieIELyed~APrSv~yFRr~t~-l~~-kpVGk------L~Vhfay~d~~~vmfegn~~~~K~llPEN~P~d~Ve~g~iG  448 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRSTG-LKT-KPVGK------LKVHFAYDDTYLVMFEGNAVLAKGLLPENTPADTVEAGEIG  448 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhcc-ccc-ccccc------eEEEEEeCCceEEEEcCChHHhccCCCCCCchhheeccccc
Confidence            48999999999999999998762 110 01122      344555555  22223443322211111111111     11


Q ss_pred             CcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhC
Q 029122          117 DENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAE  177 (198)
Q Consensus       117 ~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~  177 (198)
                      -.|...+|  .|+++..-.+.+.    |    ++..+-=....++|+|++|.+-|..|...
T Consensus       449 vTN~a~r~--~GmIGVRL~dsde----f----GPTGE~Fe~TNiIGrIveg~e~l~~ikeG  499 (512)
T COG4070         449 VTNQAARH--MGMIGVRLEDSDE----F----GPTGEKFEGTNIIGRIVEGPERLIGIKEG  499 (512)
T ss_pred             ccccchhc--cceeEEEeccccc----c----CCCCCccccceeehhhccChHHhcccccC
Confidence            11222233  3555544322221    1    22222112356889999999999888753

>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins

Probab=95.34  E-value=0.13  Score=39.23  Aligned_cols=107  Identities=19%  Similarity=0.152  Sum_probs=56.7

Q ss_pred             EEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecC--ceEEecCCcCCCCCCCccccCCcccCcccC
Q 029122           44 RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPS--FMIQGGDFTLGDGRGGESIFGESFADENFK  121 (198)
Q Consensus        44 ~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~--~~iq~Gd~~~~~~~~~~~~~~~~~~~e~~~  121 (198)
                      .++.+|..|.||++|+.|.+.-             =|.+..+|-..-+  .++.-++..           ....+.||..
T Consensus         9 ~~~A~l~~d~AP~Tcaa~~~~L-------------P~~~~~~HarwSG~ei~~~l~~~~-----------~~~~~~EN~T   64 (147)
T PF12903_consen    9 SFTARLLDDKAPKTCAAFWEAL-------------PLKGKVIHARWSGEEIWIPLPDFD-----------PFEPGRENHT   64 (147)
T ss_dssp             EEEEEE-TTTSHHHHHHHHHH---------------EEEE-EE-SSSSSEEEEEEE--S-----------SS---S-SEE
T ss_pred             EEEEEEcccCChHHHHHHHHhC-------------CCCCcEEEEEEECcEEEEECCCcC-----------cCCCCCCcCc
Confidence            5889999999999999999987             1777777777655  355555532           1123344433


Q ss_pred             cccCCCeEEEee--e-cCCC--CC-CceEEEEccCCcCC-CC-----CceEEEEEEcCHHHHHHHH
Q 029122          122 LKHTGPGVLSMA--N-AGPD--TN-GSQFFITTVITSWL-DG-----RHVVFGKVLSGMDVVRKIE  175 (198)
Q Consensus       122 ~~~~~~G~ls~~--~-~~~~--~~-~sqF~Itl~~~~~l-d~-----~~~vfG~Vi~G~~vl~~I~  175 (198)
                      . +-.+|-|.+.  . +...  .. -++.-|..+..+-+ ..     .-.+|++|++|+|-|.++.
T Consensus        65 ~-~P~pGdi~~~y~~~~~~~~~pg~~~e~~i~yg~g~~~f~~~~G~l~GN~FatI~egle~la~~~  129 (147)
T PF12903_consen   65 V-TPIPGDILLYYEPGSAWGGNPGGISETEIFYGYGNLLFASKMGWLPGNHFATITEGLEELAEAC  129 (147)
T ss_dssp             S-S--TTEEEEE-----------E-EEEEEEE-SSS---EETTTEE--EEEEEEEEESHHHHHHHH
T ss_pred             c-cCCCCcEEEEecCCccccCCCcceEEEEEEEeeCceEecCCccccceeEEEEEcCCHHHHHHHH
Confidence            2 2246766665  1 1111  11 24555555433221 11     1368999999999887775

The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
1dyw_A	173	Biochemical And Structural Characterization Of A Di		2e-60
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		2e-55
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		9e-55
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		4e-54
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		4e-54
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		5e-54
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		6e-54
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		3e-53
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		4e-52
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		7e-52
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		9e-52
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		1e-51
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		1e-51
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		1e-51
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		2e-51
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		3e-51
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		3e-51
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		1e-50
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		9e-50
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		1e-49
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		1e-49
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		1e-49
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		1e-49
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		1e-49
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		1e-49
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		2e-49
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		3e-49
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		3e-49
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		3e-49
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		4e-49
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		4e-49
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		5e-49
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		5e-49
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		5e-49
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		2e-48
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		2e-48
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		2e-48
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		4e-48
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		6e-48
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		5e-47
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		3e-46
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		3e-46
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		2e-45
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		2e-45
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		3e-45
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		2e-42
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		3e-42
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		3e-42
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		4e-41
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		5e-41
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		9e-41
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		6e-40
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		7e-39
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		4e-33
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		1e-25
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		1e-25
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		1e-25
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		1e-24
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		3e-22
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		2e-21
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		5e-21
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		1e-20
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		1e-20
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		3e-19
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		3e-16
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		2e-14
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		1e-13
2nul_A	164	Peptidylprolyl Isomerase From E. Coli Length = 164		2e-09
1lop_A	164	Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P		1e-08
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		2e-08
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		3e-08
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		4e-07
3t1u_A	163	Crystal Structure Of The Complex Of Cyclophilin-a E		3e-06
3s6m_A	167	The Structure Of A Peptidyl-Prolyl Cis-Trans Isomer		5e-06
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		1e-05

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  228 bits (580), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 129/167 (77%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           KV+FDI +GGK  GRIVM L+   VPKT  NFRALCTGE GIGKSGKPL++KGS FHRII
Sbjct: 5   KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64
Query: 90  PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P+FMIQ            ESI+GE F DENFK KHTGPGVLSMANAGP+TNGSQFF+ TV
Sbjct: 65  PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T WLDG+HVVFG+V+ G+DVV+ +E+ G QSG+P    +I++ G++
Sbjct: 125 KTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  211 bits (537), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/171 (59%), Positives = 126/171 (73%), Gaps = 3/171 (1%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           KV+FDI +  K  GRIVM L+   VPKT ENFRALCTGEKG G+SGKPL+YK S FHR+I
Sbjct: 9   KVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVI 68
Query: 90  PSFMIQXXXXXXXXXXXXESIFGESFADENFKLK---HTGPGVLSMANAGPDTNGSQFFI 146
           P+FMIQ            ESI+G +F DE+F  K   HTG G LSMANAGP+TNGSQFFI
Sbjct: 69  PNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFI 128
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
            T  T WLDG+HVVFG+V+ G+DVV+K+E  G  SG+ +S++V+S+ GE+A
Sbjct: 129 CTAATPWLDGKHVVFGRVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEVA 179

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  209 bits (531), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 103/164 (62%), Positives = 115/164 (70%)
Query: 31  VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
           VYFDI +G  P GRI M LF   VP T ENFRALCTGEKG+G+SGKPL Y GS FHRIIP
Sbjct: 22  VYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP 81
Query: 91  SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
            FMIQ            ESI+G  F DENF   H  P +LSMANAGP+TNGSQFFITTV 
Sbjct: 82  QFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVP 141
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSG 194
             WLDG+HVVFGKVL GM+VV+ IE  G Q+G+P   V I+ SG
Sbjct: 142 CPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  207 bits (526), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 120/167 (71%), Gaps = 7/167 (4%)
Query: 31  VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
           VY D++  GKP+GR+V+ L    VPKT ENFRALCTGEKG G       YKGS+FHR+IP
Sbjct: 6   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 58
Query: 91  SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
           SFM Q            +SI+G  F DENF LKH GPGVLSMANAGP+TNGSQFFI T+ 
Sbjct: 59  SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 118
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
           T WLDG+HVVFG V+ GMDVV+KIE+ G +SG    K+VI++ G+++
Sbjct: 119 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  207 bits (526), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 120/167 (71%), Gaps = 7/167 (4%)
Query: 31  VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
           VY D++  GKP+GR+V+ L    VPKT ENFRALCTGEKG G       YKGS+FHR+IP
Sbjct: 6   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 58
Query: 91  SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
           SFM Q            +SI+G  F DENF LKH GPGVLSMANAGP+TNGSQFFI T+ 
Sbjct: 59  SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 118
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
           T WLDG+HVVFG V+ GMDVV+KIE+ G +SG    K+VI++ G+++
Sbjct: 119 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  206 bits (525), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 120/167 (71%), Gaps = 7/167 (4%)
Query: 31  VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
           VY D++  GKP+GR+V+ L    VPKT ENFRALCTGEKG G       YKGS+FHR+IP
Sbjct: 7   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 59
Query: 91  SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
           SFM Q            +SI+G  F DENF LKH GPGVLSMANAGP+TNGSQFFI T+ 
Sbjct: 60  SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 119
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
           T WLDG+HVVFG V+ GMDVV+KIE+ G +SG    K+VI++ G+++
Sbjct: 120 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 166

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  206 bits (525), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 120/167 (71%), Gaps = 7/167 (4%)
Query: 31  VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
           VY D++  GKP+GR+V+ L    VPKT ENFRALCTGEKG G       YKGS+FHR+IP
Sbjct: 5   VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIP 57
Query: 91  SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
           SFM Q            +SI+G  F DENF LKH GPGVLSMANAGP+TNGSQFFI T+ 
Sbjct: 58  SFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIK 117
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
           T WLDG+HVVFG V+ GMDVV+KIE+ G +SG    K+VI++ G+++
Sbjct: 118 TDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 108/174 (62%), Positives = 121/174 (69%), Gaps = 8/174 (4%)
Query: 26  KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
           KVT +VYFD+E+GGKPIGRIV+GLFGK VPKT  NF  L    KG G       Y GS F
Sbjct: 4   KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKF 56
Query: 86  HRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
           HR+I  FMIQ             SI+GE FADENFKLKH G G LSMANAG DTNGSQFF
Sbjct: 57  HRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFF 116
Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEMAL 198
           ITTV T WLDGRHVVFGK+L GMDVVRKIE   +  G+ PK  V+I+ SG +A+
Sbjct: 117 ITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAV 170

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  200 bits (509), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 97/165 (58%), Positives = 117/165 (70%), Gaps = 7/165 (4%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
            V+FDI   G P+G I   LF   VPKT  NFRALCTGEKG G       Y GS FHR+I
Sbjct: 3   NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRVI 55
Query: 90  PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM+Q            +SI+G  FADENF+LKH  PG+LSMANAGP+TNGSQFFITTV
Sbjct: 56  PDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTV 115
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSG 194
           +TSWLDG+HVVFG+V+ GM+VV+ IEAEG  SG+P+S++ I+  G
Sbjct: 116 VTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  199 bits (506), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 104/183 (56%), Positives = 129/183 (70%), Gaps = 12/183 (6%)
Query: 19  NSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPL 78
           + +++  KVT KVYFD+ +G + IGR+V+GLFGK VPKTV+NF AL TGEKG G      
Sbjct: 3   DEKKKRPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG------ 56
Query: 79  YYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPD 138
            YK S FHR+I  FMIQ            +SI+GE F DENFKLKH GPG +SMANAG D
Sbjct: 57  -YKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKD 115
Query: 139 TNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE---AEGRQSGEPKSKVVISNSGE 195
           TNGSQFFITTV T+WLDG+HVVFGKVL GM+VVRK+E    +GR   +P   V I++ G+
Sbjct: 116 TNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRD--KPLKDVTIADCGK 173
Query: 196 MAL 198
           + +
Sbjct: 174 IEV 176

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  199 bits (506), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 98/167 (58%), Positives = 116/167 (69%), Gaps = 1/167 (0%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           KV+FDI +     GRI+  LF    P+T ENFRALCTGEK IG  GK L+YK S FHRII
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 90  PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM Q            ESI+G SF DENF +KH  PG+LSMANAGP+TN SQFFIT V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
              WLDG+HVVFGKV+ GM+VVR++E EG +SG  K  VVI++ GE+
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/166 (57%), Positives = 118/166 (71%), Gaps = 7/166 (4%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           +VY DI++G KP GRI M L    VP T ENFR LCT EKG G       +KGSSFHRII
Sbjct: 13  QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRII 65
Query: 90  PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM Q            +SI+G+ F DENF LKHTGPG+LSMAN+GP+TNGSQFF+T  
Sbjct: 66  PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 125
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGE 195
            T WLDG+HVVFG+V  G+DV+R+IEA+G + G+PK KV+I++ GE
Sbjct: 126 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 171

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 96/166 (57%), Positives = 118/166 (71%), Gaps = 7/166 (4%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           +VY DI++G KP GRI M L    VP T ENFR LCT EKG G       +KGSSFHRII
Sbjct: 5   QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHRII 57
Query: 90  PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM Q            +SI+G+ F DENF LKHTGPG+LSMAN+GP+TNGSQFF+T  
Sbjct: 58  PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 117
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGE 195
            T WLDG+HVVFG+V  G+DV+R+IEA+G + G+PK KV+I++ GE
Sbjct: 118 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 163

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/183 (56%), Positives = 129/183 (70%), Gaps = 12/183 (6%)
Query: 19  NSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPL 78
           + +++  KVT KVYFD+ +G + IGR+V+GLFGK VPKTV+NF AL TGEKG G      
Sbjct: 3   DEKKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG------ 56
Query: 79  YYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPD 138
            YK S FHR+I  FMIQ            +SI+GE F DENFKLKH GPG +SMANAG D
Sbjct: 57  -YKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKD 115
Query: 139 TNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE---AEGRQSGEPKSKVVISNSGE 195
           TNGSQFFITTV T+WLDG+HVVFGKVL GM+VVRK+E    +GR   +P   V I++ G+
Sbjct: 116 TNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRD--KPLKDVTIADCGK 173
Query: 196 MAL 198
           + +
Sbjct: 174 IEV 176

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 129/184 (70%), Gaps = 8/184 (4%)
Query: 16  LEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSG 75
           L  + +++  KVT KVYFD+ +G + +GR++ GLFGK VPKTV+NF AL TGEKG G   
Sbjct: 3   LGSDEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG--- 59
Query: 76  KPLYYKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANA 135
               YK S FHR+I  FMIQ            +SI+GE F DENFKLKH GPG +SMANA
Sbjct: 60  ----YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANA 115
Query: 136 GPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSG 194
           G DTNGSQFFITTV T+WLDG+HVVFGKVL GM+VVRK+E+    S  +P   V+I++ G
Sbjct: 116 GKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCG 175
Query: 195 EMAL 198
           ++ +
Sbjct: 176 KIEV 179

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  197 bits (502), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 101/174 (58%), Positives = 124/174 (71%), Gaps = 8/174 (4%)
Query: 26  KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
           KVT KVYFD+ +G + +GR++ GLFGK VPKTV+NF AL TGEKG G       YK S F
Sbjct: 3   KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKF 55
Query: 86  HRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
           HR+I  FMIQ            +SI+GE F DENFKLKH GPG +SMANAG DTNGSQFF
Sbjct: 56  HRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFF 115
Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSGEMAL 198
           ITTV T+WLDG+HVVFGKVL GM+VVRK+E+    S  +P   V+I++ G++ +
Sbjct: 116 ITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEV 169

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  197 bits (502), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 94/167 (56%), Positives = 118/167 (70%), Gaps = 7/167 (4%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           +VYFD+E  G+PIGR+V  L+   VPKT ENFRALCTGEKG G       Y GS FHR+I
Sbjct: 3   QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVI 55
Query: 90  PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM+Q            +SI+G  F DENFK  H  PG+LSMANAGP+TNGSQFFITTV
Sbjct: 56  PDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTV 115
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
              WLDG+HVVFG+V+ G D+V+K+E+ G  SG  K+++V++ SGE+
Sbjct: 116 PCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  195 bits (496), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/166 (58%), Positives = 114/166 (68%), Gaps = 1/166 (0%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           KV+FDI +     GRI+  LF    P+T ENFRALCTGEK IG  GK L+YK S FHRII
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNSIFHRII 63
Query: 90  PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM Q            ESI+G SF DENF +KH  PG+LSMANAGP+TN SQF IT V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGE 195
              WLDG+HVVFGKV+ GM+VVR++E EG +SG  K  VVI++ GE
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGE 169

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  192 bits (488), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55  RIIPGFMCQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG+HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55  RIIPGFMCQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG+HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55  RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG+HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55  RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG+HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 53
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 54  RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 113
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG+HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 114 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55  RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG+HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  192 bits (487), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 21  VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 73
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 74  RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 133
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG+HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 134 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 183

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 10  VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 62
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 63  RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 122
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG+HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 123 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 172

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  191 bits (484), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+L+MANAGP+TNGSQFFI
Sbjct: 55  RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG+HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  191 bits (484), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 114/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55  RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 115 CTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  191 bits (484), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 114/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55  RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 115 CTAKTEWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  190 bits (483), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/166 (56%), Positives = 115/166 (69%), Gaps = 7/166 (4%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           +VY DI++G KP GRI   L    VP T ENFR LCT EKG G       +KGSSFHRII
Sbjct: 14  QVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG-------FKGSSFHRII 66
Query: 90  PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P F  Q            +SI+G+ F DENF LKHTGPG+LS AN+GP+TNGSQFF+T  
Sbjct: 67  PQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCD 126
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGE 195
            T WLDG+HVVFG+V  G+DV+R+IEA+G + G+PK KV+I++ GE
Sbjct: 127 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 172

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  190 bits (483), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 2   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 54
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           +IIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 55  KIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 114
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG+HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 115 CTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 115/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 53
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 54  RIIPGFMCQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 113
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG+HVVFGKV  GM++V  ++  G ++G+   K+ I++ G++
Sbjct: 114 CTAKTEWLDGKHVVFGKVKEGMNIVEAMKRFGSRNGKTSKKITIADCGQL 163

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 95/170 (55%), Positives = 114/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 6   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 58
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 59  RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 118
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 119 CTAKTKWLDGXHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 168

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  190 bits (482), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 114/170 (67%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 53
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP FM Q            +SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFFI
Sbjct: 54  RIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFI 113
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG+HVVFG V  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 114 CTAKTKWLDGKHVVFGAVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 117/168 (69%), Gaps = 1/168 (0%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRI 88
           +V+FD+++GG+ +GRIV+ LF   VPKT ENFRALCTGEKGIG + GKPL++KG  FHRI
Sbjct: 17  RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76
Query: 89  IPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
           I  FMIQ            ESI+GE F DENF  KH   G+LSMANAG +TNGSQFFITT
Sbjct: 77  IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 136
Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
           V T  LDG+HVVFG+V+ GM V + +E    +  +P    VI+  GE+
Sbjct: 137 VPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 184

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 119/167 (71%), Gaps = 7/167 (4%)
Query: 31  VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
           V+F+I +  KP GRIV  L+ +AVPKT +NFR L TG+ G G       YK S FHR+IP
Sbjct: 5   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 57
Query: 91  SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
            FM+Q            +SI+GE FADENF++KHT PG+LSMANAG +TNGSQFFITTV 
Sbjct: 58  QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVP 117
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
           TSWLDG+HVVFG+V+ G+D+VRK+E +G  SG+  + + I++ G +A
Sbjct: 118 TSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTVA 164

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 119/179 (66%), Gaps = 8/179 (4%)
Query: 21  REELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYY 80
           R+    VT KV+FD+ +G K +GRIV+GLFGK VPKTVENF AL TGEKG G       Y
Sbjct: 8   RKRGPSVTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------Y 60
Query: 81  KGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTN 140
           KGS FHR+I  FMIQ             SI+GE+F DENFKLKH G G +SMANAGPDTN
Sbjct: 61  KGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTN 120
Query: 141 GSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEMAL 198
           GSQFFIT    +WLDG+HVVFGKV+ GM VV  IE +     + P +   I NSG++ +
Sbjct: 121 GSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQATDGHDRPLTNCSIINSGKIDV 179

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  187 bits (475), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 99/173 (57%), Positives = 116/173 (67%), Gaps = 8/173 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           VT KV+FD+ +G K +GRIV+GLFG  VPKTVENF AL TGEKG G       YKGS FH
Sbjct: 6   VTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYG-------YKGSIFH 58
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           R+I  FMIQ             SI+GE+F DENFKLKH G G +SMANAGPDTNGSQFFI
Sbjct: 59  RVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFI 118
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEMAL 198
           T    +WLDG+HVVFGKVL GM VV  IE +     + P +   I NSG++ +
Sbjct: 119 TLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDV 171

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  186 bits (473), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 117/164 (71%), Gaps = 7/164 (4%)
Query: 31  VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
           V+F+I +  KP GRIV  L+ +AVPKT +NFR L TG+ G G       YK S FHR+IP
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIP 58
Query: 91  SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
            FM+Q            +SI+GE FADENF++KHT PG+LSMANAG +TNGSQFFITTV 
Sbjct: 59  QFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVP 118
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSG 194
           TSWLDG+HVVFG+V+ G+D+VRK+E +G  SG+  + + I++ G
Sbjct: 119 TSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCG 162

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 111/170 (65%), Gaps = 7/170 (4%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS FH
Sbjct: 1   VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFH 53
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           RIIP F  Q            +SI+GE F DENF LKHTGPG+LS ANAGP+TNGSQFFI
Sbjct: 54  RIIPGFXCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFI 113
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T  T WLDG+HVVFGKV  G ++V   E  G ++G+   K+ I++ G++
Sbjct: 114 CTAKTEWLDGKHVVFGKVKEGXNIVEAXERFGSRNGKTSKKITIADCGQL 163

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 111/167 (66%), Gaps = 7/167 (4%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           +V+FDI +G    GRIVM L    VP+T ENFRALCTGE+G G       Y    FHR+I
Sbjct: 12  RVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCFHRVI 64
Query: 90  PSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM Q            +SI+G  F DENF+L+H G GVLSMAN+GP+TNGSQFFI T 
Sbjct: 65  PQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTT 124
Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
              WLDG+HVVFG+V+ G +VV+K+E+ G +SG+ K  V+IS  GE+
Sbjct: 125 KCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 98/172 (56%), Positives = 113/172 (65%), Gaps = 9/172 (5%)
Query: 26  KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
           +VT KVYFD+ +  +P+GRI +GLFGK  P T ENFR LCTGE G G       YK S F
Sbjct: 9   EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIF 61
Query: 86  HRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
           HR+I +FMIQ            +SI+GE FADEN  +KH   G LSMANAGP+TNGSQFF
Sbjct: 62  HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120
Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEM 196
           ITT  T WLDGRHVVFGKVL GMDVV +IE     S + P   V I  SGE+
Sbjct: 121 ITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/172 (56%), Positives = 112/172 (65%), Gaps = 9/172 (5%)
Query: 26  KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
           +VT KVYFD+ +  +P+GRI +GLFGK  P T ENFR LCTGE G G       YK S F
Sbjct: 9   EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIF 61
Query: 86  HRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
           HR+I +FMIQ            +SI+GE FADEN  +KH   G LSMANAGP+TNGSQFF
Sbjct: 62  HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120
Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEM 196
           ITT  T WLDG HVVFGKVL GMDVV +IE     S + P   V I  SGE+
Sbjct: 121 ITTAPTPWLDGAHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/169 (55%), Positives = 117/169 (69%), Gaps = 9/169 (5%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           VT KVYFDI +G +P+GR+V+GLFG  VPKTVENF+ L +GE G G       YKGS FH
Sbjct: 4   VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFH 56
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           R+I +FMIQ            +SI+G  F DEN K+KH   G +SMANAGP++NGSQFF+
Sbjct: 57  RVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFV 115
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISNSG 194
           TT  T WLDGRHVVFGKV+ GMDVV+K+E  +   + +PK  V I++ G
Sbjct: 116 TTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCG 164

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  177 bits (449), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 112/171 (65%), Gaps = 3/171 (1%)
Query: 27  VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFH 86
           V   V+FD+ +GG+ +GR+ + LF   VPKT ENFR  CTGE    K G P+ YKGS+FH
Sbjct: 9   VNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPIGYKGSTFH 66
Query: 87  RIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFI 146
           R+I  FMIQ             SI+   FADENFKL+H+ PG+LSMAN+GP TNG QFFI
Sbjct: 67  RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 126
Query: 147 TTVITSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISNSGEM 196
           T     WLDG+HVVFGK++ G+ V+RKIE      + +PK  VVIS  GEM
Sbjct: 127 TCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRI 88
           + +FDI +  +P GR+V  LF    PKT ENFR LCTGEKG GKS  KPL+YK   FHR+
Sbjct: 28  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 87
Query: 89  IPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
           +  FM+Q            ESI+G  F DE+F +KH    +LSMAN G DTNGSQFFITT
Sbjct: 88  VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITT 147
Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSG-EPKSKVVISNSGEM 196
             T  LDG HVVFG+V+SG +VVR+IE +   +  +P ++V I + GE+
Sbjct: 148 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRI 88
           + +FDI +  +P GR+V  LF    PKT ENFR LCTGEKG GKS  KPL+YK   FHR+
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70
Query: 89  IPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
           +  FM+Q            ESI+G  F DE+F +KH    +LSMAN G DTNGSQFFITT
Sbjct: 71  VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSG-EPKSKVVISNSGEM 196
             T  LDG HVVFG+V+SG +VVR+IE +   +  +P ++V I + GE+
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 86/169 (50%), Positives = 110/169 (65%), Gaps = 2/169 (1%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRI 88
           + +FDI +  +P GR+V  LF    PKT ENFR LCTGEKG GKS  KPL+YK   FHR+
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRV 70
Query: 89  IPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
           +  FM+Q            ESI+G  F DE+F +KH    +LSMAN G DTNGSQFFITT
Sbjct: 71  VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSG-EPKSKVVISNSGEM 196
             T  LDG HVVFG+V+SG +VVR+IE +   +  +P ++V I + GE+
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  164 bits (414), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/175 (50%), Positives = 109/175 (62%), Gaps = 2/175 (1%)
Query: 25  EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGS 83
           +K   +V+ D+ + G   GRIVM L+    P+T  NF  LCTG  G GK SGKPL+YKGS
Sbjct: 3   KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGS 62
Query: 84  SFHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQ 143
           +FHR+I +FMIQ            ESI+G  F DE F +KH  P V+SMAN GP+TNGSQ
Sbjct: 63  TFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQ 122
Query: 144 FFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSGEMA 197
           FFITT     L+  HVVFGKV+SG +VV KIE     S   P + VVI N GE+ 
Sbjct: 123 FFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGELV 177

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  163 bits (413), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 104/166 (62%), Gaps = 9/166 (5%)
Query: 31  VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
           VYFD+    + +GRIVM L    VPKT +NFR LC   KG G       YKGS+FHRIIP
Sbjct: 30  VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTFHRIIP 82
Query: 91  SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
            FM+Q             SI+GE F DENF+LKHT  G+LSMAN G  TNGSQFFIT   
Sbjct: 83  GFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGK 142
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS--KVVISNSG 194
           T WLD +HVVFG+V+ GMDVV KI   G +SG+ K   ++ I + G
Sbjct: 143 TQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCG 188

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  162 bits (411), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 82/166 (49%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 31  VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
           V+FD+   G+P+GRI M LF   VP+T ENFRALCTGEKG G       +K S FHR+IP
Sbjct: 9   VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFG-------FKNSIFHRVIP 61
Query: 91  SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
            F+ Q            +SI+G+ F DENF +KHTGPG+LSMAN G +TN SQF IT   
Sbjct: 62  DFVCQGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKK 121
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
              LD +HVVFG V  GMD V+KIE+ G   G    ++ I+  G++
Sbjct: 122 AEHLDFKHVVFGFVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 167

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  160 bits (404), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 89/176 (50%), Positives = 108/176 (61%), Gaps = 16/176 (9%)
Query: 30  KVYFDIE-----VGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSS 84
           +V+FD+E          +GRIV  LF K VPKT +NFR LC    G G       Y+ S+
Sbjct: 4   QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YREST 56
Query: 85  FHRIIPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQF 144
           FHRIIP+FMIQ             SI+G+ FADENF  KH   G+LSMANAGP+TNGSQF
Sbjct: 57  FHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQF 116
Query: 145 FITTVITSWLDGRHVVFGKVLS--GMDVVRKIEAEGRQSGEPKSKVV--ISNSGEM 196
           FITT +TSWLDG+HVVFG+V       VV++IEA G  SG  +S     I N GE+
Sbjct: 117 FITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  156 bits (395), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 83/170 (48%), Positives = 109/170 (64%), Gaps = 2/170 (1%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRI 88
           + +FDIE+  +P+GRI+  LF    PKT +NF  LC+GEKG+GK+ GK L YKGS+FHR+
Sbjct: 21  QCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRV 80
Query: 89  IPSFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
           + +FMIQ            ESI+G  F DENF LKH    +LSMAN G  TNGSQFFITT
Sbjct: 81  VKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITT 140
Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEA-EGRQSGEPKSKVVISNSGEMA 197
                LDG HVVFG V+SG +V+ +IE  +   +  P + V + + G +A
Sbjct: 141 KPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  137 bits (345), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 92/147 (62%), Gaps = 4/147 (2%)
Query: 31  VYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIP 90
           V+ DI +G   +G+    LF   VPKT ENFR  CTGE  +  +  P+ YK + FHR+I 
Sbjct: 62  VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIFHRVIK 119
Query: 91  SFMIQXXXXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
            FMIQ             SI+GE F DENF +KH   G+LSMAN+GP+TNG QFFITT  
Sbjct: 120 EFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKK 179
Query: 151 TSWLDGRHVVFGKVLSG--MDVVRKIE 175
             WLDG++VVFG+++    + +++KIE
Sbjct: 180 CEWLDGKNVVFGRIIDNDSLLLLKKIE 206

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 81/134 (60%), Gaps = 12/134 (8%)
Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
           +G IV+ L+ K  PKT +NF  L    +G        YY G+ FHRII  FMIQ      
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTG 69
Query: 102 XXXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
                  SI+G+ F DE +  LK TG G+L+MANAGPDTNGSQFF+T   T WLDG+H +
Sbjct: 70  TGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128
Query: 161 FGKVLSGMDVVRKI 174
           FG+V  G+ +V ++
Sbjct: 129 FGRVCQGIGMVNRV 142

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 81/134 (60%), Gaps = 12/134 (8%)
Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
           +G IV+ L+ K  PKT +NF  L    +G        YY G+ FHRII  FMIQ      
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTG 69
Query: 102 XXXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
                  SI+G+ F DE +  LK TG G+L+MANAGPDTNGSQFF+T   T WLDG+H +
Sbjct: 70  TGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128
Query: 161 FGKVLSGMDVVRKI 174
           FG+V  G+ +V ++
Sbjct: 129 FGRVCQGIGMVNRV 142

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 81/134 (60%), Gaps = 12/134 (8%)
Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
           +G IV+ L+ K  PKT +NF  L    +G        YY G+ FHRII  FMIQ      
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPTG 69
Query: 102 XXXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
                  SI+G+ F DE +  LK TG G+L+MANAGPDTNGSQFF+T   T WLDG+H +
Sbjct: 70  TGRGGA-SIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128
Query: 161 FGKVLSGMDVVRKI 174
           FG+V  G+ +V ++
Sbjct: 129 FGRVCQGIGMVNRV 142

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 77/134 (57%), Gaps = 12/134 (8%)
Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
           +G I   LF    PKTVENF   C   +         YY G +FHRII  FMIQ      
Sbjct: 30  MGDIHTKLFPVECPKTVENF---CVHSRN-------GYYNGHTFHRIIKGFMIQTGDPTG 79
Query: 102 XXXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
                 ESI+G  F DE +  L+H  P  LSMANAG +TNGSQFFIT V T WLD +H V
Sbjct: 80  TGMGG-ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTV 138
Query: 161 FGKVLSGMDVVRKI 174
           FG+V  GM+VV++I
Sbjct: 139 FGRVTKGMEVVQRI 152

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/135 (44%), Positives = 72/135 (53%), Gaps = 12/135 (8%)
Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
           +G I + LF K   KTV+NF                 YY    FHR+I  FM+Q      
Sbjct: 14  MGDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPSG 63
Query: 102 XXXXXXESIFGESFADENFK-LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
                 ESI+G  F DE F  L H+ P ++SMAN GP+TNGSQFFITTV   WLD +H V
Sbjct: 64  DGTGG-ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122
Query: 161 FGKVLSGMDVVRKIE 175
           FGKV  G  +V  IE
Sbjct: 123 FGKVTQGSKIVLDIE 137

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 16/153 (10%)
Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
           G + + L     PKT ENF  LC          K  YY G+ FHR I +F+IQ       
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC----------KKHYYDGTIFHRSIRNFVIQGGDPTGT 78
Query: 103 XXXXXESIFGESFADENFK--LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
                ES +G+ F DE F+  L HTG G+LSMAN+GP++N SQFFIT    ++LD +H +
Sbjct: 79  GTGG-ESYWGKPFKDE-FRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTI 136
Query: 161 FGKVLSGMDVVRKIE--AEGRQSGEPKSKVVIS 191
           FG+V+ G DV+  +E      ++  PK ++ I 
Sbjct: 137 FGRVVGGFDVLTAMENVESDPKTDRPKEEIRID 169

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 74/134 (55%), Gaps = 12/134 (8%)
Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
           +G   + L+    PKT  NF  LC  E G        +Y  + FHR+IP+F+IQ      
Sbjct: 47  LGDFEVELYWYHSPKTCLNFYTLC--EMG--------FYDNTIFHRVIPNFVIQGGDPTG 96
Query: 102 XXXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
                 +SI+GE F DE N +LKHTG G+LSM+N GP+TN SQFFIT      LDG+H +
Sbjct: 97  TGKGG-KSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTI 155
Query: 161 FGKVLSGMDVVRKI 174
           F +V   M  +  I
Sbjct: 156 FARVSKNMTCIENI 169

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
           +G I + +F +  PKT ENF ALC             YY G  FHR I  FM+Q      
Sbjct: 15  VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTG 64
Query: 102 XXXXXXESIFGESFADENFK-LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
                  SI+G+ F DE  + LKH   GV+SMAN GP+TNGSQFFIT      LD ++ V
Sbjct: 65  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 123
Query: 161 FGKVLSGMDVVRKIE 175
           FGKV+ G++ + ++E
Sbjct: 124 FGKVIDGLETLDELE 138

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 75/135 (55%), Gaps = 12/135 (8%)
Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXX 101
           +G I + +F +  PKT ENF ALC             YY G  FHR I  FM+Q      
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTG 58
Query: 102 XXXXXXESIFGESFADENFK-LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
                  SI+G+ F DE  + LKH   GV+SMAN GP+TNGSQFFIT      LD ++ V
Sbjct: 59  TGRGG-NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTV 117
Query: 161 FGKVLSGMDVVRKIE 175
           FGKV+ G++ + ++E
Sbjct: 118 FGKVIDGLETLDELE 132

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 77/158 (48%), Gaps = 15/158 (9%)
Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGI---GKSGKP--LYYKGSSFHRIIPSFMIQXX 97
           G I + LFG   PKTV NF  L  G K       SG P   +Y G+ FHR+I  FMIQ  
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 98  XXXXXXXXXXESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGR 157
                        F + F  E   L+   P +L+MANAGP TNGSQFFIT   T  L+ R
Sbjct: 93  DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 149
Query: 158 HVVFGKVLSG-----MDVVRKIEAEGRQSGEPKSKVVI 190
           H +FG+V+       ++ + K   +G     P   VVI
Sbjct: 150 HTIFGEVIDAESQRVVEAISKTATDGND--RPTDPVVI 185

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 17/156 (10%)
Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
           G +   LF    PK  +NF AL         SG   YYK + FH+ I  F+IQ       
Sbjct: 26  GDLKFELFCSQCPKACKNFLALSA-------SG---YYKNTIFHKNIKGFIIQGGDPTGT 75
Query: 103 XXXXXESIFGESFADENF-KLKHTGPGVLSMANAG----PDTNGSQFFITTVITSWLDGR 157
                ESI+G  F DE + +LK+   G+LSMA+ G    P+TNGSQFFIT      L+G 
Sbjct: 76  GKGG-ESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGE 134
Query: 158 HVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISN 192
           +V+FGK++ G + +  +E     +S +P  +++I +
Sbjct: 135 YVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
           G I + L+ K  PK   NF  LC             YY  + FHR++P F++Q       
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLCL----------EAYYDNTIFHRVVPGFIVQGGDPTGT 83
Query: 103 XXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVF 161
                ESI+G  F DE + +L+    G+++MANAG   NGSQFF T      L+ +H +F
Sbjct: 84  GSGG-ESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIF 142
Query: 162 GKV 164
           GKV
Sbjct: 143 GKV 145

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 22/145 (15%)
Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
           G + + L     P+  ++F  LC  +          Y+  + FHR I +FMIQ       
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAELR 65
Query: 103 XXXXXESIF-----------GESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVI 150
                + +            G  F DE + +L H G GVLSMAN G  +N S+FFIT   
Sbjct: 66  QPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKS 125
Query: 151 TSWLDGRHVVFGKVLSGMDVVRKIE 175
              L+ +H +FG+V+ G+DV+R+ E
Sbjct: 126 CEHLNNKHTIFGRVVGGLDVLRQWE 150

>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli Length = 164

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 73/164 (44%), Gaps = 31/164 (18%)
Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQ--XXXXX 100
           G IV+  F    P+TV+NF   C          +  +Y  + FHR+I  FMIQ       
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58
Query: 101 XXXXXXXESIFGESFADENFKLKHTGPGVLSMANA-GPDTNGSQFFITTVITSWLDGR-- 157
                  E I  E+    N  LK+T  G L+MA    P +  +QFFI  V   +L+    
Sbjct: 59  MKQKATKEPIKNEA----NNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 158 ------HVVFGKVLSGMDVVRKIE--AEGR---QSGEPKSKVVI 190
                 + VF +V+ GMDVV KI+  A GR       PK  V+I
Sbjct: 114 SLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|1LOP|A Chain A, Cyclophilin A Complexed With Succinyl-Ala-Pro-Ala-P-Nitroanilide Length = 164

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 72/164 (43%), Gaps = 31/164 (18%)
Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQ--XXXXX 100
           G IV+  F    P+TV+NF   C          +  +Y  + FHR+I  FMIQ       
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58
Query: 101 XXXXXXXESIFGESFADENFKLKHTGPGVLSMANA-GPDTNGSQFFITTVITSWLDGR-- 157
                  E I  E+    N  LK+T  G L+MA    P +  +QFFI  V   +L+    
Sbjct: 59  MKQKATKEPIKNEA----NNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGE 113
Query: 158 ------HVVFGKVLSGMDVVRKIE--AEGR---QSGEPKSKVVI 190
                 + VF +V+ GMD V KI+  A GR       PK  V+I
Sbjct: 114 SLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
           G I + L  +  P +V+NF            SG   +Y  ++FHR+IP FMIQ       
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQ 63
Query: 103 XXXXXESIFGESFADENFKLKHTGPGVLSMA-NAGPDTNGSQFFITTVITSWLD-GR--- 157
                 +   ++ AD    L++T  G ++MA  A  D+  SQFFI     ++LD G+   
Sbjct: 64  MQQKKPNPPIKNEADNG--LRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 158 -HVVFGKVLSGMDVVRKI 174
            + VFGKV+ GMDV  KI
Sbjct: 121 GYAVFGKVVKGMDVADKI 138

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 19/138 (13%)
Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
           G I + L  +  P +V+NF            SG   +Y  ++FHR+IP FMIQ       
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYVN-------SG---FYNNTTFHRVIPGFMIQGGGFTEQ 63
Query: 103 XXXXXESIFGESFADENFKLKHTGPGVLSMA-NAGPDTNGSQFFITTVITSWLD-GR--- 157
                 +   ++ AD    L++T  G ++MA  A  D+  SQFFI     ++LD G+   
Sbjct: 64  MQQKKPNPPIKNEADNG--LRNTR-GTIAMARTADKDSATSQFFINVADNAFLDHGQRDF 120
Query: 158 -HVVFGKVLSGMDVVRKI 174
            + VFGKV+ GMDV  KI
Sbjct: 121 GYAVFGKVVKGMDVADKI 138

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 29/173 (16%)
Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGE------KGIGKSGKPLY---- 79
           +VY DI +  + IGR+ + LF  A P  VENF  L  G+       G GK     +    
Sbjct: 16  RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRT 75
Query: 80  YKGSSFHRIIPSFMIQXXXXXXXXXXXXESIFGES-----FADENFKLKHTGPGVLSMAN 134
           Y+G  FH ++ +  I              +++ +      F D  +   H   G+LS+  
Sbjct: 76  YEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESKGLLSLV- 132
Query: 135 AGPDTNGSQFFITTVITSW-----------LDGRHVVFGKVLSGMDVVRKIEA 176
              D +G++++ +T + +            LD   VV G+V  G+DV+ KI +
Sbjct: 133 PYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINS 185

>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme From Azotobacter Vinelandii With Sucafpfpna Peptide Length = 163

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 70/179 (39%), Gaps = 55/179 (30%)
Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
           G I + LF    P+T  NF              K  +Y G+ FHR+I  FMIQ       
Sbjct: 9   GTITLKLFADKAPETAANFEQYV----------KDGHYDGTIFHRVIDGFMIQ------- 51
Query: 103 XXXXXESIFGESFADENFKLKHTGPGVLSMANAG---------------PDTNGSQFFIT 147
                    G  F +   K K T   + + AN G               P +  +QFFI 
Sbjct: 52  ---------GGGF-EPGMKQKSTRAPIKNEANNGLSNKKYTIAMARTPDPHSASAQFFIN 101
Query: 148 TVITSWLDGR--------HVVFGKVLSGMDVVRKIE--AEGRQSGE---PKSKVVISNS 193
               ++LD          + VFG+V+ G DVV +I+  A G ++G    P   V+I  +
Sbjct: 102 VKDNAFLDHTAPTAHGWGYAVFGEVVEGTDVVDRIKSVATGSRAGHGDVPVDDVIIEKA 160

>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 67/162 (41%), Gaps = 27/162 (16%)
Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQXXXXXXX 102
           G I + L     PKTVENF  L   +KG        +Y G+ FHR+I  FMIQ       
Sbjct: 13  GVIKLELDEAKAPKTVENF--LNYVKKG--------HYDGTIFHRVINGFMIQGGGFEPG 62
Query: 103 XXXXXESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGR---- 157
                        A+E N  LK+    +       P +  +QFFI      +L+      
Sbjct: 63  LKQKPTD---APIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTP 119
Query: 158 ----HVVFGKVLSGMDVVRKIEA-----EGRQSGEPKSKVVI 190
               + VFGKV+ G D+V KI+A     +G     P   VVI
Sbjct: 120 QGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 31/156 (19%)
Query: 30  KVYFDIEVGGK-----PIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSS 84
            +YF     GK      +G + + L+ +  P    NF  LC   +G        YY  + 
Sbjct: 13  NLYFQGSTRGKVVLHTSLGDLDVELWARECPLACRNFVQLCL--EG--------YYVNTI 62
Query: 85  FHRIIPSFMIQXXXXXXXXXXXXESIF-GESFADENF-KLKHTGPGVLSMANAGPD---- 138
           FHR++  F++Q            ++ F G+ F  E   +LK    G++ +AN G      
Sbjct: 63  FHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDA 122
Query: 139 ----------TNGSQFFITTVITSWLDGRHVVFGKV 164
                     TNG+QFFIT      L+  + +FGKV
Sbjct: 123 ENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKV 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	1e-124
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	1e-123
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	1e-123
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-123
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	1e-121
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	1e-121
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-121
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-120
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	1e-118
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	1e-117
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	1e-117
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	1e-116
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	1e-116
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	1e-115
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	1e-115
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-115
1z81_A	229	Cyclophilin; structural genomics, structural genom	1e-115
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	1e-109
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-108
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	5e-78
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	9e-77
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	2e-76
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	5e-76
2b71_A	196	Cyclophilin-like protein; structural genomics, str	1e-72
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	5e-68
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	7e-68
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	7e-68
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	5e-66
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	1e-64
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	7e-63
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	8e-57
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	7e-44
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	8e-44
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	3e-42
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	1e-34

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  347 bits (892), Expect = e-124
 Identities = 92/182 (50%), Positives = 124/182 (68%), Gaps = 2/182 (1%)

Query: 19  NSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKP 77
           +S   + + + + +FDIE+  +P+GRI+  LF    PKT +NF  LC+GEKG+GK+ GK 
Sbjct: 10  HSSGLVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKK 69

Query: 78  LYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGP 137
           L YKGS+FHR++ +FMIQGGDF+ G+G+GGESI+G  F DENF LKH    +LSMAN G 
Sbjct: 70  LCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGK 129

Query: 138 DTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEM 196
            TNGSQFFITT     LDG HVVFG V+SG +V+ +IE     +   P + V + + G +
Sbjct: 130 HTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVL 189

Query: 197 AL 198
           A 
Sbjct: 190 AT 191

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  345 bits (887), Expect = e-123
 Identities = 116/167 (69%), Positives = 139/167 (83%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           KV+FDI +GGK  GRIVM L+   VPKT  NFRALCTGE GIGKSGKPL++KGS FHRII
Sbjct: 5   KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P+FMIQGGDFT G+G GGESI+GE F DENFK KHTGPGVLSMANAGP+TNGSQFF+ TV
Sbjct: 65  PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T WLDG+HVVFG+V+ G+DVV+ +E+ G QSG+P    +I++ G++
Sbjct: 125 KTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  344 bits (885), Expect = e-123
 Identities = 99/174 (56%), Positives = 119/174 (68%), Gaps = 2/174 (1%)

Query: 25  EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGS 83
           +K   +V+ D+ + G   GRIVM L+    P+T  NF  LCTG  G GK SGKPL+YKGS
Sbjct: 3   KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGS 62

Query: 84  SFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQ 143
           +FHR+I +FMIQGGDFT GDG GGESI+G  F DE F +KH  P V+SMAN GP+TNGSQ
Sbjct: 63  TFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQ 122

Query: 144 FFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSGEM 196
           FFITT     L+  HVVFGKV+SG +VV KIE     S   P + VVI N GE+
Sbjct: 123 FFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  344 bits (884), Expect = e-123
 Identities = 113/165 (68%), Positives = 125/165 (75%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
            VYFDI +G  P GRI M LF   VP T ENFRALCTGEKG+G+SGKPL Y GS FHRII
Sbjct: 21  VVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRII 80

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FMIQGGDFT GDG GGESI+G  F DENF   H  P +LSMANAGP+TNGSQFFITTV
Sbjct: 81  PQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTV 140

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSG 194
              WLDG+HVVFGKVL GM+VV+ IE  G Q+G+P   V I+ SG
Sbjct: 141 PCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  339 bits (873), Expect = e-121
 Identities = 98/178 (55%), Positives = 121/178 (67%), Gaps = 3/178 (1%)

Query: 20  SREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY 79
           +      V   V+FD+ +GG+ +GR+ + LF   VPKT ENFR  CTGE    K G P+ 
Sbjct: 2   AVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR--KDGVPIG 59

Query: 80  YKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDT 139
           YKGS+FHR+I  FMIQGGDF  GDG G  SI+   FADENFKL+H+ PG+LSMAN+GP T
Sbjct: 60  YKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPST 119

Query: 140 NGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISNSGEM 196
           NG QFFIT     WLDG+HVVFGK++ G+ V+RKIE      + +PK  VVIS  GEM
Sbjct: 120 NGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  339 bits (872), Expect = e-121
 Identities = 95/169 (56%), Positives = 120/169 (71%), Gaps = 2/169 (1%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRI 88
           + +FDI +  +P GR+V  LF    PKT ENFR LCTGEKG GKS  KPL+YK   FHR+
Sbjct: 11  RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70

Query: 89  IPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
           +  FM+QGGDF+ G+GRGGESI+G  F DE+F +KH    +LSMAN G DTNGSQFFITT
Sbjct: 71  VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130

Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEM 196
             T  LDG HVVFG+V+SG +VVR+IE +   +   P ++V I + GE+
Sbjct: 131 KPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  337 bits (868), Expect = e-121
 Identities = 105/167 (62%), Positives = 124/167 (74%), Gaps = 1/167 (0%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           KV+FDI +     GRI+  LF    P+T ENFRALCTGEK  G  GK L+YK S FHRII
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI-GSRGKNLHYKNSIFHRII 63

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM QGGD T G+G GGESI+G SF DENF +KH  PG+LSMANAGP+TN SQFFIT V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
              WLDG+HVVFGKV+ GM+VVR++E EG +SG  K  VVI++ GE+
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  343 bits (882), Expect = e-120
 Identities = 101/183 (55%), Positives = 128/183 (69%), Gaps = 1/183 (0%)

Query: 15  ALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIG-K 73
           +      +       +V+FD+++GG+ +GRIV+ LF   VPKT ENFRALCTGEKGIG  
Sbjct: 2   SHPSPQAKPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPT 61

Query: 74  SGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMA 133
           +GKPL++KG  FHRII  FMIQGGDF+  +G GGESI+GE F DENF  KH   G+LSMA
Sbjct: 62  TGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMA 121

Query: 134 NAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNS 193
           NAG +TNGSQFFITTV T  LDG+HVVFG+V+ GM V + +E    +  +P    VI+  
Sbjct: 122 NAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAEC 181

Query: 194 GEM 196
           GE+
Sbjct: 182 GEL 184

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  331 bits (852), Expect = e-118
 Identities = 111/183 (60%), Positives = 137/183 (74%), Gaps = 8/183 (4%)

Query: 15  ALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS 74
            L  + +++  KVT KVYFD+ +G + +GR++ GLFGK VPKTV+NF AL TGEKG G  
Sbjct: 2   PLGSDEKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-- 59

Query: 75  GKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMAN 134
                YK S FHR+I  FMIQGGDFT GDG GG+SI+GE F DENFKLKH GPG +SMAN
Sbjct: 60  -----YKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMAN 114

Query: 135 AGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISNS 193
           AG DTNGSQFFITTV T+WLDG+HVVFGKVL GM+VVRK+E+       +P   V+I++ 
Sbjct: 115 AGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADC 174

Query: 194 GEM 196
           G++
Sbjct: 175 GKI 177

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  329 bits (845), Expect = e-117
 Identities = 97/171 (56%), Positives = 121/171 (70%), Gaps = 7/171 (4%)

Query: 26  KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
           +   +V+FDI +G    GRIVM L    VP+T ENFRALCTGE+G G       Y    F
Sbjct: 8   RNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG-------YHNCCF 60

Query: 86  HRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
           HR+IP FM QGGDF  GDG GG+SI+G  F DENF+L+H G GVLSMAN+GP+TNGSQFF
Sbjct: 61  HRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFF 120

Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
           I T    WLDG+HVVFG+V+ G +VV+K+E+ G +SG+ K  V+IS  GE+
Sbjct: 121 ICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  328 bits (844), Expect = e-117
 Identities = 105/179 (58%), Positives = 131/179 (73%), Gaps = 7/179 (3%)

Query: 18  GNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKP 77
           G+   +  +   +VY DI++G KP GRI M L    VP T ENFR LCT EKG G     
Sbjct: 1   GSPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG----- 55

Query: 78  LYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGP 137
             +KGSSFHRIIP FM QGGDFT  +G GG+SI+G+ F DENF LKHTGPG+LSMAN+GP
Sbjct: 56  --FKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGP 113

Query: 138 DTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
           +TNGSQFF+T   T WLDG+HVVFG+V  G+DV+R+IEA+G + G+PK KV+I++ GE 
Sbjct: 114 NTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 172

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  327 bits (840), Expect = e-116
 Identities = 96/197 (48%), Positives = 120/197 (60%), Gaps = 9/197 (4%)

Query: 3   TKTRLVSVALLWALEGNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFR 62
                  +  L A         ++ +  VYFD+    + +GRIVM L    VPKT +NFR
Sbjct: 2   AHHHHHHMGTLEAQTQGPGSMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFR 61

Query: 63  ALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKL 122
            LC   KG G       YKGS+FHRIIP FM+QGGD+T  +G GG SI+GE F DENF+L
Sbjct: 62  TLCERPKGEG-------YKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFEL 114

Query: 123 KHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSG 182
           KHT  G+LSMAN G  TNGSQFFIT   T WLD +HVVFG+V+ GMDVV KI   G +SG
Sbjct: 115 KHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESG 174

Query: 183 EPK--SKVVISNSGEMA 197
           + K   ++ I + G + 
Sbjct: 175 QVKKGYRIEIRDCGVLG 191

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  325 bits (836), Expect = e-116
 Identities = 103/171 (60%), Positives = 124/171 (72%), Gaps = 7/171 (4%)

Query: 26  KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
            V   V+FDI V G+P+GR+   LF   VPKT ENFRAL TGEKG G       YKGS F
Sbjct: 20  MVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCF 72

Query: 86  HRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
           HRIIP FM QGGDFT  +G GG+SI+GE F DENF LKHTGPG+LSMANAGP+TNGSQFF
Sbjct: 73  HRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFF 132

Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
           I T  T WLDG+HVVFGKV  GM++V  +E  G ++G+   K+ I++ G++
Sbjct: 133 ICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 183

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  324 bits (834), Expect = e-115
 Identities = 99/168 (58%), Positives = 128/168 (76%), Gaps = 7/168 (4%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
            V+F+I +  KP GRIV  L+ +AVPKT +NFR L TG+ G G       YK S FHR+I
Sbjct: 4   NVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVI 56

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM+QGGDFT  +G GG+SI+GE FADENF++KHT PG+LSMANAG +TNGSQFFITTV
Sbjct: 57  PQFMLQGGDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTV 116

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
            TSWLDG+HVVFG+V+ G+D+VRK+E +G  SG+  + + I++ G +A
Sbjct: 117 PTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTVA 164

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  324 bits (833), Expect = e-115
 Identities = 105/168 (62%), Positives = 128/168 (76%), Gaps = 7/168 (4%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
            VY D++  GKP+GR+V+ L    VPKT ENFRALCTGEKG G       YKGS+FHR+I
Sbjct: 5   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVI 57

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           PSFM Q GDFT  +G GG+SI+G  F DENF LKH GPGVLSMANAGP+TNGSQFFI T+
Sbjct: 58  PSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTI 117

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
            T WLDG+HVVFG V+ GMDVV+KIE+ G +SG    K+VI++ G+++
Sbjct: 118 KTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  323 bits (831), Expect = e-115
 Identities = 107/172 (62%), Positives = 121/172 (70%), Gaps = 9/172 (5%)

Query: 26  KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
           +VT KVYFD+ +  +P+GRI +GLFGK  P T ENFR LCTGE G G       YK S F
Sbjct: 9   EVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIF 61

Query: 86  HRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
           HR+I +FMIQGGDFT  DG GG+SI+GE FADEN  +KH   G LSMANAGP+TNGSQFF
Sbjct: 62  HRVIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFF 120

Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSGEM 196
           ITT  T WLDGRHVVFGKVL GMDVV +IE     S   P   V I  SGE+
Sbjct: 121 ITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  325 bits (834), Expect = e-115
 Identities = 79/171 (46%), Positives = 107/171 (62%), Gaps = 6/171 (3%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
            V+ DI +G   +G+    LF   VPKT ENFR  CTGE  +  +  P+ YK + FHR+I
Sbjct: 61  VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKV--NNLPVGYKNTIFHRVI 118

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
             FMIQGGDF   +G G  SI+GE F DENF +KH   G+LSMAN+GP+TNG QFFITT 
Sbjct: 119 KEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTK 178

Query: 150 ITSWLDGRHVVFGKVLS--GMDVVRKIEAEGRQS--GEPKSKVVISNSGEM 196
              WLDG++VVFG+++    + +++KIE         +PK  + +   GE+
Sbjct: 179 KCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  309 bits (795), Expect = e-109
 Identities = 98/176 (55%), Positives = 119/176 (67%), Gaps = 16/176 (9%)

Query: 30  KVYFDIE-----VGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSS 84
           +V+FD+E          +GRIV  LF K VPKT +NFR LC    G G       Y+ S+
Sbjct: 4   QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YREST 56

Query: 85  FHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQF 144
           FHRIIP+FMIQGGDFT G+G GG SI+G+ FADENF  KH   G+LSMANAGP+TNGSQF
Sbjct: 57  FHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQF 116

Query: 145 FITTVITSWLDGRHVVFGKVL--SGMDVVRKIEAEGRQSGEPKS--KVVISNSGEM 196
           FITT +TSWLDG+HVVFG+V       VV++IEA G  SG  +S  +  I N GE+
Sbjct: 117 FITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  309 bits (793), Expect = e-108
 Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 24/195 (12%)

Query: 26  KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGE------KGIGKSGK--- 76
               +VY DI +  + IGR+ + LF  A P  VENF  L  G+       G GK      
Sbjct: 12  GKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRH 71

Query: 77  -PLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFAD---ENFKLKHTGPGVLSM 132
               Y+G  FH ++ +  I  GD    +G    +++ +        ++   H   G+LS+
Sbjct: 72  INRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSL 131

Query: 133 A----NAGPDTNGSQFFIT------TVITSWLDGRHVVFGKVLSGMDVVRKIEA-EGRQS 181
                 +G     S F IT      + +   LD   VV G+V  G+DV+ KI +     +
Sbjct: 132 VPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYA 191

Query: 182 GEPKSKVVISNSGEM 196
           G       I   G  
Sbjct: 192 GRKYPTFSIGKCGAY 206

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  229 bits (587), Expect = 5e-78
 Identities = 82/180 (45%), Positives = 101/180 (56%), Gaps = 18/180 (10%)

Query: 20  SREELEKVTH----KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSG 75
           S+EE+   T     K   D  +    +G I   LF    PKTVENF           ++G
Sbjct: 4   SKEEVMAATQAEGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS-------RNG 56

Query: 76  KPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADE-NFKLKHTGPGVLSMAN 134
              YY G +FHRII  FMIQ GD T G G GGESI+G  F DE +  L+H  P  LSMAN
Sbjct: 57  ---YYNGHTFHRIIKGFMIQTGDPT-GTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMAN 112

Query: 135 AGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAE--GRQSGEPKSKVVISN 192
           AG +TNGSQFFIT V T WLD +H VFG+V  GM+VV++I       ++ +P   V I N
Sbjct: 113 AGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  226 bits (578), Expect = 9e-77
 Identities = 70/153 (45%), Positives = 85/153 (55%), Gaps = 13/153 (8%)

Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTL 101
           +G I + LF K   KTV+NF                 YY    FHR+I  FM+Q GD + 
Sbjct: 14  MGDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPS- 62

Query: 102 GDGRGGESIFGESFADENFK-LKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
           GDG GGESI+G  F DE F  L H+ P ++SMAN GP+TNGSQFFITTV   WLD +H V
Sbjct: 63  GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 122

Query: 161 FGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISN 192
           FGKV  G  +V  IE       + P   + I N
Sbjct: 123 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 155

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  226 bits (579), Expect = 2e-76
 Identities = 75/158 (47%), Positives = 96/158 (60%), Gaps = 13/158 (8%)

Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTL 101
           +G IV+ L+ K  PKT +NF  L    +G        YY G+ FHRII  FMIQGGD T 
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPT- 68

Query: 102 GDGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
           G GRGG SI+G+ F DE +  LK TG G+L+MANAGPDTNGSQFF+T   T WLDG+H +
Sbjct: 69  GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128

Query: 161 FGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEMA 197
           FG+V  G+ +V ++      S + P   V I  +    
Sbjct: 129 FGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSG 166

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  224 bits (574), Expect = 5e-76
 Identities = 75/154 (48%), Positives = 96/154 (62%), Gaps = 13/154 (8%)

Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTL 101
           +G IV+ L+ K  PKT +NF  L    +G        YY G+ FHRII  FMIQGGD T 
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELA--RRG--------YYNGTKFHRIIKDFMIQGGDPT- 68

Query: 102 GDGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
           G GRGG SI+G+ F DE +  LK TG G+L+MANAGPDTNGSQFF+T   T WLDG+H +
Sbjct: 69  GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTI 128

Query: 161 FGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNS 193
           FG+V  G+ +V ++      S + P   V I  +
Sbjct: 129 FGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA 162

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  217 bits (555), Expect = 1e-72
 Identities = 66/152 (43%), Positives = 87/152 (57%), Gaps = 13/152 (8%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G   + L+    PKT  NF  LC  E G        +Y  + FHR+IP+F+IQGGD T G
Sbjct: 48  GDFEVELYWYHSPKTCLNFYTLC--EMG--------FYDNTIFHRVIPNFVIQGGDPT-G 96

Query: 103 DGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVF 161
            G+GG+SI+GE F DE N +LKHTG G+LSM+N GP+TN SQFFIT      LDG+H +F
Sbjct: 97  TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIF 156

Query: 162 GKVLSGMDVVRKIEAEGRQSGE-PKSKVVISN 192
            +V   M  +  I +    +   P   + I  
Sbjct: 157 ARVSKNMTCIENIASVQTTATNKPIFDLKILR 188

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  203 bits (520), Expect = 5e-68
 Identities = 69/153 (45%), Positives = 90/153 (58%), Gaps = 14/153 (9%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G I + +F +  PKT ENF ALC        S    YY G  FHR I  FM+Q GD T G
Sbjct: 10  GDIKIEVFCERTPKTCENFLALC-------ASN---YYNGCIFHRNIKGFMVQTGDPT-G 58

Query: 103 DGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVF 161
            GRGG SI+G+ F DE +  LKH   GV+SMAN GP+TNGSQFFIT      LD ++ VF
Sbjct: 59  TGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVF 118

Query: 162 GKVLSGMDVVRKIEAE--GRQSGEPKSKVVISN 192
           GKV+ G++ + ++E      ++  P + V I +
Sbjct: 119 GKVIDGLETLDELEKLPVNEKTYRPLNDVHIKD 151

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  205 bits (523), Expect = 7e-68
 Identities = 56/180 (31%), Positives = 82/180 (45%), Gaps = 26/180 (14%)

Query: 26  KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
           K+  K Y  I       G + + L     P+  ++F  LC  +          Y+  + F
Sbjct: 2   KLKKKGYLRIVT---TQGSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIF 48

Query: 86  HRIIPSFMIQGGDFTLGD----GRGGESIF-------GESFADE-NFKLKHTGPGVLSMA 133
           HR I +FMIQGG   L          +S         G  F DE + +L H G GVLSMA
Sbjct: 49  HRCIRNFMIQGGRAELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMA 108

Query: 134 NAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISN 192
           N G  +N S+FFIT      L+ +H +FG+V+ G+DV+R+ E  E  +  +P     +  
Sbjct: 109 NDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEE 168

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  204 bits (522), Expect = 7e-68
 Identities = 66/169 (39%), Positives = 94/169 (55%), Gaps = 17/169 (10%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
            +YF         G +   LF    PK  +NF AL         SG   YYK + FH+ I
Sbjct: 13  NLYFQGVRIITNYGDLKFELFCSQCPKACKNFLALS-------ASG---YYKNTIFHKNI 62

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENF-KLKHTGPGVLSMANAG----PDTNGSQF 144
             F+IQGGD T G G+GGESI+G  F DE + +LK+   G+LSMA+ G    P+TNGSQF
Sbjct: 63  KGFIIQGGDPT-GTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQF 121

Query: 145 FITTVITSWLDGRHVVFGKVLSGMDVVRKIE-AEGRQSGEPKSKVVISN 192
           FIT      L+G +V+FGK++ G + +  +E     +S +P  +++I +
Sbjct: 122 FITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  200 bits (511), Expect = 5e-66
 Identities = 67/151 (44%), Positives = 91/151 (60%), Gaps = 14/151 (9%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G + + L     PKT ENF  LC  +K         YY G+ FHR I +F+IQGGD T G
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLC--KKH--------YYDGTIFHRSIRNFVIQGGDPT-G 77

Query: 103 DGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVF 161
            G GGES +G+ F DE    L HTG G+LSMAN+GP++N SQFFIT    ++LD +H +F
Sbjct: 78  TGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIF 137

Query: 162 GKVLSGMDVVRKIEAE--GRQSGEPKSKVVI 190
           G+V+ G DV+  +E      ++  PK ++ I
Sbjct: 138 GRVVGGFDVLTAMENVESDPKTDRPKEEIRI 168

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  196 bits (500), Expect = 1e-64
 Identities = 55/153 (35%), Positives = 79/153 (51%), Gaps = 14/153 (9%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G I + L+ K  PK   NF  LC             YY  + FHR++P F++QGGD T G
Sbjct: 34  GDIDIELWSKEAPKACRNFIQLC-------LEA---YYDNTIFHRVVPGFIVQGGDPT-G 82

Query: 103 DGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVF 161
            G GGESI+G  F DE + +L+    G+++MANAG   NGSQFF T      L+ +H +F
Sbjct: 83  TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIF 142

Query: 162 GKVLS-GMDVVRKIE-AEGRQSGEPKSKVVISN 192
           GKV    +  + ++   +      P +   I +
Sbjct: 143 GKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKS 175

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  192 bits (489), Expect = 7e-63
 Identities = 70/159 (44%), Positives = 85/159 (53%), Gaps = 13/159 (8%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEK-----GIGKSGKPLYYKGSSFHRIIPSFMIQGG 97
           G I + LFG   PKTV NF  L  G K              +Y G+ FHR+I  FMIQGG
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92

Query: 98  DFTLGDGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDG 156
           D T G GRGG    G  FADE + +L+   P +L+MANAGP TNGSQFFIT   T  L+ 
Sbjct: 93  DPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNR 148

Query: 157 RHVVFGKVLS--GMDVVRKIEAEGRQSGE-PKSKVVISN 192
           RH +FG+V+      VV  I        + P   VVI +
Sbjct: 149 RHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIES 187

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  178 bits (453), Expect = 8e-57
 Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 30/170 (17%)

Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTL 101
           +G + + L+ +  P    NF  LC         G   YY  + FHR++  F++QGGD T 
Sbjct: 30  LGDLDVELWARECPLACRNFVQLC-------LEG---YYVNTIFHRVVKDFIVQGGDPT- 78

Query: 102 GDGRGG--ESIFGESFADE-NFKLKHTGPGVLSMANAGPD--------------TNGSQF 144
           G GRGG   +  G+ F  E + +LK    G++ +AN G                TNG+QF
Sbjct: 79  GTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQF 138

Query: 145 FITTVITSWLDGRHVVFGKVLS-GMDVVRKIE-AEGRQSGEPKSKVVISN 192
           FIT      L+  + +FGKV    +  + K    E  +   P +   I +
Sbjct: 139 FITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKS 188

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score =  143 bits (362), Expect = 7e-44
 Identities = 54/163 (33%), Positives = 72/163 (44%), Gaps = 29/163 (17%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G I + L     PKTVENF           K G   +Y G+ FHR+I  FMIQGG F   
Sbjct: 13  GVIKLELDEAKAPKTVENFLNYV-------KKG---HYDGTIFHRVINGFMIQGGGFE-P 61

Query: 103 DGRGGESIFGESFADE-NFKLKHTGPGVLSMA-NAGPDTNGSQFFITTVITSWLDGR--- 157
             +   +      A+E N  LK+     ++MA    P +  +QFFI      +L+     
Sbjct: 62  GLKQKPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPT 118

Query: 158 -----HVVFGKVLSGMDVVRKIEAEGRQSGE-----PKSKVVI 190
                + VFGKV+ G D+V KI+A    S       P   VVI
Sbjct: 119 PQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVI 161

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  142 bits (361), Expect = 8e-44
 Identities = 53/163 (32%), Positives = 74/163 (45%), Gaps = 29/163 (17%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G IV+  F    P+TV+NF   C       + G   +Y  + FHR+I  FMIQGG F   
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC-------REG---FYNNTIFHRVINGFMIQGGGFE-P 57

Query: 103 DGRGGESIFGESFADE-NFKLKHTGPGVLSMA-NAGPDTNGSQFFITTVITSWLDGR--- 157
             +   +   E   +E N  LK+T  G L+MA    P +  +QFFI  V   +L+     
Sbjct: 58  GMKQKAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGES 114

Query: 158 -----HVVFGKVLSGMDVVRKIEAEGRQSGE-----PKSKVVI 190
                + VF +V+ GMD V KI+             PK  V+I
Sbjct: 115 LQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score =  138 bits (351), Expect = 3e-42
 Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 26/160 (16%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G I + L  +  P +V+NF            SG   +Y  ++FHR+IP FMIQGG FT  
Sbjct: 14  GNIELELDKQKAPVSVQNFVDYV-------NSG---FYNNTTFHRVIPGFMIQGGGFT-E 62

Query: 103 DGRGGESIFGESFADE-NFKLKHTGPGVLSMA-NAGPDTNGSQFFITTVITSWLDGR--- 157
             +  +        +E +  L++T  G ++MA  A  D+  SQFFI     ++LD     
Sbjct: 63  QMQQKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119

Query: 158 --HVVFGKVLSGMDVVRKIEAEGRQSGE-----PKSKVVI 190
             + VFGKV+ GMDV  KI              P   VVI
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVI 159

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  124 bits (313), Expect = 1e-34
 Identities = 33/168 (19%), Positives = 50/168 (29%), Gaps = 45/168 (26%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGD---- 98
               + L G   P T  NF  L   E+         +Y G    R    F++Q GD    
Sbjct: 188 CVFRIVLDGYNAPVTAGNFVDLV--ERH--------FYDGMEIQRS-DGFVVQTGDPEGP 236

Query: 99  ---FTLGDGRGGESIFGE------------------SFADENFKLKHTGPGVLSMANAG- 136
              F         ++  E                          +     G ++MA    
Sbjct: 237 AEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEF 296

Query: 137 -PDTNGSQFFITTVI-------TSWLDGRHVVFGKVLSGMDVVRKIEA 176
             D+  SQ F            ++ LDGR+ VFG V    D +  ++ 
Sbjct: 297 ENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKV 344

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3kop_A	188	Uncharacterized protein; protein with A cyclophili	95.69
2nnz_A	153	Hypothetical protein; beta-barrel, structural geno	94.79

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=1.3e-55  Score=345.51  Aligned_cols=171  Identities=68%  Similarity=1.191  Sum_probs=163.8

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG  106 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~  106 (198)
                      .+++||||+.++++++|+|+||||++.||++|+||++||++.+|.+..++..||+|+.||||+|+|+|||||+..+++.+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~g   81 (173)
T 2igv_A            2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTG   81 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCCCC
Confidence            46899999999999999999999999999999999999998777777788889999999999999999999998888899


Q ss_pred             CccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCccc
Q 029122          107 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS  186 (198)
Q Consensus       107 ~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~  186 (198)
                      ++++|+..+++|+..++|.++|+|+|++.++++++|||||++.+.|+||++|+|||||++|||||++|+..++++++|.+
T Consensus        82 g~siyg~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~  161 (173)
T 2igv_A           82 GESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVK  161 (173)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSS
T ss_pred             CCccCCCcccCcccccCCCCCeEEEEeeCCCCCcceEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888899999


Q ss_pred             ceEEeeeeeec
Q 029122          187 KVVISNSGEMA  197 (198)
Q Consensus       187 ~i~I~~cg~l~  197 (198)
                      +|+|.+||+|+
T Consensus       162 ~v~I~~~g~l~  172 (173)
T 2igv_A          162 DCMIADCGQLK  172 (173)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CEEEEEeEEEc
Confidence            99999999996

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=1.4e-54  Score=340.79  Aligned_cols=172  Identities=56%  Similarity=0.928  Sum_probs=160.6

Q ss_pred             ccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCC-CCcccccCCEEEEeecCceEEecCCcCCCC
Q 029122           26 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRIIPSFMIQGGDFTLGDG  104 (198)
Q Consensus        26 ~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~-~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~  104 (198)
                      +.+++|||||.++++++|+|+||||++.||++|+||++||++.+|.++. |+..||+|+.||||+|+|+|||||+..+++
T Consensus         4 ~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g   83 (177)
T 1a58_A            4 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDG   83 (177)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSSS
T ss_pred             CCCcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCCC
Confidence            3578999999999999999999999999999999999999988776544 566799999999999999999999988889


Q ss_pred             CCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC-CCCC
Q 029122          105 RGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGE  183 (198)
Q Consensus       105 ~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~-~~~~  183 (198)
                      .+++++|+..+++|+..++|+++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|+..++ .+++
T Consensus        84 ~gg~si~g~~f~dE~~~~~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~  163 (177)
T 1a58_A           84 TGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNR  163 (177)
T ss_dssp             SCCCCTTSSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSC
T ss_pred             CCCCcccCCcccCcccCcccCCCeEEEEeeCCCCCceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999997765 4589


Q ss_pred             cccceEEeeeeeec
Q 029122          184 PKSKVVISNSGEMA  197 (198)
Q Consensus       184 P~~~i~I~~cg~l~  197 (198)
                      |.++|+|.+||+|.
T Consensus       164 P~~~v~I~~~G~l~  177 (177)
T 1a58_A          164 PLADVVILNCGELV  177 (177)
T ss_dssp             BSSCEEEEEEEEEC
T ss_pred             CCCCeEEEEeEEEC
Confidence            99999999999984

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=2.3e-54  Score=339.95  Aligned_cols=170  Identities=55%  Similarity=0.948  Sum_probs=160.0

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCC-CCCcccccCCEEEEeecCceEEecCCcCCCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGR  105 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~-~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~  105 (198)
                      .+++||||+.+++|++|+|+||||++.||++|+||++||+|.+|.++ .++..||+|+.||||+|+|+|||||+..+++.
T Consensus         8 ~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~   87 (179)
T 2wfi_A            8 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGR   87 (179)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCCCC
Confidence            58899999999999999999999999999999999999998887653 35678999999999999999999999878889


Q ss_pred             CCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC-CCCCc
Q 029122          106 GGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEP  184 (198)
Q Consensus       106 ~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~-~~~~P  184 (198)
                      +++++|+..+++|+..++|+++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|+..++ .+++|
T Consensus        88 gg~si~g~~f~dE~~~~~h~~~G~lsMAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P  167 (179)
T 2wfi_A           88 GGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKP  167 (179)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCB
T ss_pred             CCCcccCCcccccccCcCcCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997765 46899


Q ss_pred             ccceEEeeeeee
Q 029122          185 KSKVVISNSGEM  196 (198)
Q Consensus       185 ~~~i~I~~cg~l  196 (198)
                      .++|+|.+||+|
T Consensus       168 ~~~v~I~~~G~l  179 (179)
T 2wfi_A          168 FAEVRILSCGEL  179 (179)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCeEEEeCeeC
Confidence            999999999987

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=1.1e-54  Score=339.25  Aligned_cols=169  Identities=62%  Similarity=1.058  Sum_probs=159.6

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG  106 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~  106 (198)
                      .+++||||+.+++++.|+|+||||++.||++|+||++||++. |.+..++..+|+|+.||||+|+|+|||||+..+++.+
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g~g   80 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG   80 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCCCC
Confidence            478999999999999999999999999999999999999864 5445667777999999999999999999998788889


Q ss_pred             CccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCccc
Q 029122          107 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS  186 (198)
Q Consensus       107 ~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~  186 (198)
                      ++++|++.+++|+..++|+++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|+..++++++|.+
T Consensus        81 g~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~  160 (170)
T 1qng_A           81 GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKR  160 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSS
T ss_pred             CccccCCcccccccccccCCCCEEEEeecCCCCcccEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999988888899999


Q ss_pred             ceEEeeeeee
Q 029122          187 KVVISNSGEM  196 (198)
Q Consensus       187 ~i~I~~cg~l  196 (198)
                      +|+|.+||+|
T Consensus       161 ~v~I~~cG~l  170 (170)
T 1qng_A          161 SVVITDCGEL  170 (170)
T ss_dssp             CEEEEEEEEC
T ss_pred             CeEEEeceeC
Confidence            9999999987

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=2.1e-54  Score=341.69  Aligned_cols=173  Identities=65%  Similarity=1.078  Sum_probs=161.3

Q ss_pred             cccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCC
Q 029122           23 ELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG  102 (198)
Q Consensus        23 ~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~  102 (198)
                      ...+.+++||||+.+++++.|+|+||||++.||++|+||++||++.+|.++.++..+|+|+.||||+|+|+|||||+..+
T Consensus        14 ~~~~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~   93 (186)
T 2poy_A           14 LYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRG   93 (186)
T ss_dssp             ----CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTS
T ss_pred             cccCCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCC
Confidence            34567889999999999999999999999999999999999999888877778888899999999999999999999888


Q ss_pred             CCCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCC
Q 029122          103 DGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSG  182 (198)
Q Consensus       103 ~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~  182 (198)
                      ++.+++++|++.+++|+..++|.++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|+..+++++
T Consensus        94 ~G~gg~si~g~~f~dE~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~  173 (186)
T 2poy_A           94 DGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNG  173 (186)
T ss_dssp             SSSCCCCTTC-CBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTS
T ss_pred             CCCCCCccCCCcccCcccccccCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             CcccceEEeeeee
Q 029122          183 EPKSKVVISNSGE  195 (198)
Q Consensus       183 ~P~~~i~I~~cg~  195 (198)
                      +|.++|+|.+||+
T Consensus       174 ~P~~~v~I~~cG~  186 (186)
T 2poy_A          174 KPTKSVCITASGV  186 (186)
T ss_dssp             CCSSCEEEEEEEC
T ss_pred             CCCCCEEEEeCCC
Confidence            9999999999996

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.9e-54  Score=341.67  Aligned_cols=178  Identities=52%  Similarity=0.879  Sum_probs=160.5

Q ss_pred             ccccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCC-CCCcccccCCEEEEeecCceEEecC
Q 029122           20 SREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGSSFHRIIPSFMIQGGD   98 (198)
Q Consensus        20 ~~~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~-~~~~~~Y~g~~f~rv~~~~~iq~Gd   98 (198)
                      ++-.....+++||||+.+++|++|+|+||||++.||++|+||++||+|++|.+. .+|..||+|+.||||+|+|+|||||
T Consensus        11 ~~~~~~~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd   90 (192)
T 2he9_A           11 SSGLVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGD   90 (192)
T ss_dssp             --------CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECC
T ss_pred             cccccccCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCc
Confidence            344556789999999999999999999999999999999999999998887653 3577899999999999999999999


Q ss_pred             CcCCCCCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC
Q 029122           99 FTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG  178 (198)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~  178 (198)
                      +..+++.+++++|+..+++|+..++|+++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|+..+
T Consensus        91 ~~~~~G~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~gp~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~  170 (192)
T 2he9_A           91 FSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLK  170 (192)
T ss_dssp             TTTSSSSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             ccCCCCCCCCcccCCcccCccccCCCCCCeEEEEEeCCCCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCC
Confidence            98788899999999999999999999999999999999999999999999999999999999999999999999999776


Q ss_pred             C-CCCCcccceEEeeeeeec
Q 029122          179 R-QSGEPKSKVVISNSGEMA  197 (198)
Q Consensus       179 ~-~~~~P~~~i~I~~cg~l~  197 (198)
                      + ++++|.++|+|.+||+|.
T Consensus       171 t~~~~~P~~~v~I~~~g~l~  190 (192)
T 2he9_A          171 TDAASRPYADVRVIDCGVLA  190 (192)
T ss_dssp             BCTTSCBSSCEEEEEEEECC
T ss_pred             cCCCCCCcCCeEEEEeEEEc
Confidence            5 468999999999999985

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=3e-54  Score=337.18  Aligned_cols=165  Identities=58%  Similarity=1.060  Sum_probs=156.3

Q ss_pred             cccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCccc-ccCCEEEEeecCceEEecCCcCCC
Q 029122           25 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTLGD  103 (198)
Q Consensus        25 ~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~Gd~~~~~  103 (198)
                      +..+++||||+.+++|+.|+|+||||++.||++|+||++||++.+|        | |+|+.||||+|+|+|||||+..++
T Consensus         7 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~   78 (172)
T 2cmt_A            7 KRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERG--------FGYHNCCFHRVIPQFMCQGGDFVKGD   78 (172)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CSSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCCC--------ceECCCEEEEEECCCEEEcCCccCCC
Confidence            4568899999999999999999999999999999999999987655        6 999999999999999999998888


Q ss_pred             CCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCC
Q 029122          104 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE  183 (198)
Q Consensus       104 ~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~  183 (198)
                      +.+++++|+..+++|+..++|.++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|++.++++++
T Consensus        79 G~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~~~  158 (172)
T 2cmt_A           79 GTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGK  158 (172)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTTCC
T ss_pred             CCCCCccCCCcccccccCcccCCceEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             cccceEEeeeeeec
Q 029122          184 PKSKVVISNSGEMA  197 (198)
Q Consensus       184 P~~~i~I~~cg~l~  197 (198)
                      |.++|+|.+||+|+
T Consensus       159 P~~~v~I~~~g~l~  172 (172)
T 2cmt_A          159 VKEPVIISRCGELI  172 (172)
T ss_dssp             CSSCEEEEEEEEEC
T ss_pred             CCCCEEEEEeEeEC
Confidence            99999999999985

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=3.7e-54  Score=334.85  Aligned_cols=162  Identities=64%  Similarity=1.147  Sum_probs=155.5

Q ss_pred             CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCccc-ccCCEEEEeecCceEEecCCcCCCCCC
Q 029122           28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTLGDGRG  106 (198)
Q Consensus        28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~Gd~~~~~~~~  106 (198)
                      +++||||+.+++|++|+|+||||++.||++|+||++||+|.+|        | |+|+.||||+|+|+|||||+..+++.+
T Consensus         3 ~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~fhRvi~~f~iQgGd~~~~~g~g   74 (165)
T 2z6w_A            3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKG--------FGYKGSTFHRVIPSFMCQAGDFTNHNGTG   74 (165)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCCC--------ccCcCCEEEEEECCCEEEeCCccCCCCCC
Confidence            6899999999999999999999999999999999999987766        7 999999999999999999998788888


Q ss_pred             CccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCccc
Q 029122          107 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS  186 (198)
Q Consensus       107 ~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~  186 (198)
                      ++++|+..+++|+..++|.++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|+..++.+++|.+
T Consensus        75 g~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~~~~~P~~  154 (165)
T 2z6w_A           75 GKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSK  154 (165)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSS
T ss_pred             CCcccCCcccCcccccccCCCCEEEEeeCCCCCcccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCC
Confidence            99999999999998999999999999999999999999999999999999999999999999999999988888999999


Q ss_pred             ceEEeeeeeec
Q 029122          187 KVVISNSGEMA  197 (198)
Q Consensus       187 ~i~I~~cg~l~  197 (198)
                      +|+|.+||+|+
T Consensus       155 ~v~I~~~g~l~  165 (165)
T 2z6w_A          155 KIVITDCGQLS  165 (165)
T ss_dssp             CEEEEEEEECC
T ss_pred             cEEEEEeEEEC
Confidence            99999999984

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=5.7e-54  Score=336.04  Aligned_cols=165  Identities=62%  Similarity=1.096  Sum_probs=156.2

Q ss_pred             cccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCccc-ccCCEEEEeecCceEEecCCcCCC
Q 029122           25 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTLGD  103 (198)
Q Consensus        25 ~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~Gd~~~~~  103 (198)
                      ...+++||||+.+++|++|+|+||||++.||++|+||++||++.+|        | |+|+.||||+|+|+|||||+..++
T Consensus         8 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~   79 (173)
T 2r99_A            8 ARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKG--------FGFKGSSFHRIIPQFMCQGGDFTNHN   79 (173)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             ccCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccCC--------ceecCCEEEEeeCCCEEEeCCcCCCC
Confidence            3457899999999999999999999999999999999999987665        6 999999999999999999998888


Q ss_pred             CCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCC
Q 029122          104 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE  183 (198)
Q Consensus       104 ~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~  183 (198)
                      +.+++++|+..+++|+..++|+++|+|+|++.++++++|||||++.++++||++|+|||||++|||||++|+..++++++
T Consensus        80 g~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~  159 (173)
T 2r99_A           80 GTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGK  159 (173)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCC
T ss_pred             CCCCCccCCCcccCcccCcccCCCcEEEEccCCCCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999998888899


Q ss_pred             cccceEEeeeeeec
Q 029122          184 PKSKVVISNSGEMA  197 (198)
Q Consensus       184 P~~~i~I~~cg~l~  197 (198)
                      |.++|+|.+||+|+
T Consensus       160 P~~~v~I~~cG~l~  173 (173)
T 2r99_A          160 PKQKVIIADCGEYV  173 (173)
T ss_dssp             CSSCEEEEEEEECC
T ss_pred             CCCCeEEEEeeeEC
Confidence            99999999999985

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=6.8e-54  Score=333.25  Aligned_cols=162  Identities=60%  Similarity=1.088  Sum_probs=155.4

Q ss_pred             CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCccc-ccCCEEEEeecCceEEecCCcCCCCCC
Q 029122           28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTLGDGRG  106 (198)
Q Consensus        28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~Gd~~~~~~~~  106 (198)
                      +++|||||.+++|++|+|+||||++.||++|+||++||+|++|        | |+|+.||||+|+|+|||||+..+++.+
T Consensus         2 ~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g--------~~Y~g~~fhRvi~~f~iQgGd~~~~~g~g   73 (164)
T 3pmp_A            2 MANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHG--------FGYKDSIFHRVIPQFMLQGGDFTRHNGTG   73 (164)
T ss_dssp             CCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CSSTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCC--------CcccCCEEEEEECCCeEEeCCCCCCCCCC
Confidence            6899999999999999999999999999999999999997766        7 999999999999999999977788999


Q ss_pred             CccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCccc
Q 029122          107 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS  186 (198)
Q Consensus       107 ~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~  186 (198)
                      ++++|+..+++|+..++|.++|+|+|++.++++++|||||++.+.|+||++|+|||||++|||||++|++.++++++|.+
T Consensus        74 g~si~g~~~~dE~~~l~h~~~G~lsma~~g~~t~~SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~~~~P~~  153 (164)
T 3pmp_A           74 GKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNA  153 (164)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSS
T ss_pred             CcccCCccccccccccCcCCCcEEEEeeCCCCCcccEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998888999999


Q ss_pred             ceEEeeeeeec
Q 029122          187 KVVISNSGEMA  197 (198)
Q Consensus       187 ~i~I~~cg~l~  197 (198)
                      +|+|.+||+|.
T Consensus       154 ~v~I~~cg~l~  164 (164)
T 3pmp_A          154 TIKITDCGTVA  164 (164)
T ss_dssp             CEEEEEEEEC-
T ss_pred             CEEEEeCeEEC
Confidence            99999999984

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=1.3e-53  Score=336.85  Aligned_cols=167  Identities=61%  Similarity=1.068  Sum_probs=157.0

Q ss_pred             cccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCccc-ccCCEEEEeecCceEEecCCcC
Q 029122           23 ELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTL  101 (198)
Q Consensus        23 ~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~Gd~~~  101 (198)
                      ..+..+++||||+.++++++|+|+||||++.||++|+||++||++++|        | |+|+.||||+|+|+|||||+..
T Consensus        17 ~~~~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~   88 (184)
T 3rdd_A           17 FQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKG--------FGYKGSCFHRIIPGFMCQGGDFTR   88 (184)
T ss_dssp             ----CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTS--------CSSTTCBCCEEETTTEEEECCTTT
T ss_pred             cccCCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcC--------cccCCCEEEEccCCcEEEeCCCCC
Confidence            345578899999999999999999999999999999999999988765        5 9999999999999999999888


Q ss_pred             CCCCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCC
Q 029122          102 GDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS  181 (198)
Q Consensus       102 ~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~  181 (198)
                      +++.+++++++..+++|+..++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|++.++++
T Consensus        89 ~~g~gg~si~g~~~~de~~~l~h~~~G~lsmA~~gp~s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~  168 (184)
T 3rdd_A           89 HNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRN  168 (184)
T ss_dssp             SSSSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTT
T ss_pred             CCCCCCcccCCCcccCcccccccCCCcEEEEEeCCCCCcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999989999


Q ss_pred             CCcccceEEeeeeeec
Q 029122          182 GEPKSKVVISNSGEMA  197 (198)
Q Consensus       182 ~~P~~~i~I~~cg~l~  197 (198)
                      ++|.++|+|.+||+|+
T Consensus       169 g~P~~~v~I~~cG~l~  184 (184)
T 3rdd_A          169 GKTSKKITIADCGQLE  184 (184)
T ss_dssp             SCCSSCEEEEEEEECC
T ss_pred             CCCcCCeEEEeCeEEC
Confidence            9999999999999985

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=1.3e-53  Score=333.34  Aligned_cols=165  Identities=64%  Similarity=1.056  Sum_probs=155.3

Q ss_pred             cccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCccc-ccCCEEEEeecCceEEecCCcC
Q 029122           23 ELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTL  101 (198)
Q Consensus        23 ~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~Gd~~~  101 (198)
                      ..|+.+++||||+.+++|++|+|+||||++.||++|+||++||+|.+|        | |+|+.||||+|+|+|||||+..
T Consensus         6 ~~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~   77 (172)
T 2haq_A            6 HEPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHG--------FGYKDSIFHRVIQNFMIQGGDFTN   77 (172)
T ss_dssp             -CCCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CCSTTCBCCEEETTTEEEECCTTT
T ss_pred             CCCCCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCCC--------cccCCCEEEEEECCCEEecCCccC
Confidence            357889999999999999999999999999999999999999987666        7 9999999999999999999777


Q ss_pred             CCCCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCC
Q 029122          102 GDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS  181 (198)
Q Consensus       102 ~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~  181 (198)
                      +++.+++++|++.+++|+..++|. +|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++.++.+
T Consensus        78 ~~g~gg~si~g~~f~dE~~~l~h~-~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~  156 (172)
T 2haq_A           78 FDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNS  156 (172)
T ss_dssp             SSSSCCCCSSSSCBCCCCCCSCCC-TTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCG
T ss_pred             CCCCCCccccCCcccCcCCCcccC-ceEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCC
Confidence            888889999999999999899998 9999999999999999999999999999999999999999999999999877654


Q ss_pred             -CCcccceEEeeeeee
Q 029122          182 -GEPKSKVVISNSGEM  196 (198)
Q Consensus       182 -~~P~~~i~I~~cg~l  196 (198)
                       ++|.++|+|.+||+|
T Consensus       157 ~~~P~~~v~I~~~g~l  172 (172)
T 2haq_A          157 HDRPVKPVKIVASGEL  172 (172)
T ss_dssp             GGCBSSCEEEEEEEEC
T ss_pred             CCcCCCCeEEEEeEEC
Confidence             599999999999986

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=9.9e-54  Score=335.80  Aligned_cols=169  Identities=57%  Similarity=1.006  Sum_probs=158.1

Q ss_pred             ccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCC
Q 029122           26 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGR  105 (198)
Q Consensus        26 ~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~  105 (198)
                      +.+++||||+.+++|+.|+|+||||++.||++|+||++||+++.|.  .|+..+|+|+.||||+|+|+|||||+..+++.
T Consensus         8 ~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G~   85 (177)
T 1mzw_A            8 PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK--DGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT   85 (177)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE--TTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred             CCCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC--cCccceECCCEEEEEECCCEEEcCCcccCCCC
Confidence            3588999999999999999999999999999999999999887643  35666799999999999999999999878889


Q ss_pred             CCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC-CCCCc
Q 029122          106 GGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEP  184 (198)
Q Consensus       106 ~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~-~~~~P  184 (198)
                      +++++|++.+++|+..++|+++|+|||++.++++++|||||+++++|+||++|+|||||++|||||++|+..++ ++++|
T Consensus        86 gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P  165 (177)
T 1mzw_A           86 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP  165 (177)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             CCCccCCCcccCcccccccCCCCEEEEccCCCCCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997776 67899


Q ss_pred             ccceEEeeeeee
Q 029122          185 KSKVVISNSGEM  196 (198)
Q Consensus       185 ~~~i~I~~cg~l  196 (198)
                      .++|+|.+||+|
T Consensus       166 ~~~v~I~~cG~l  177 (177)
T 1mzw_A          166 KLPVVISQCGEM  177 (177)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeceeC
Confidence            999999999987

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=2.2e-53  Score=336.25  Aligned_cols=170  Identities=65%  Similarity=1.091  Sum_probs=159.4

Q ss_pred             cccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCc
Q 029122           21 REELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFT  100 (198)
Q Consensus        21 ~~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~  100 (198)
                      ++..|+++++|||||.++++++|+|+||||++.||++|+||++||++++|.       ||+|+.||||+|+|+|||||+.
T Consensus         5 ~~~~p~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~-------~Y~g~~FhRvi~~f~iQgGd~~   77 (185)
T 4fru_A            5 KKKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGF-------GYKDSKFHRVIKDFMIQGGDFT   77 (185)
T ss_dssp             GGEEEEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC-------CSTTCBCCEEETTTEEEECCTT
T ss_pred             cCCCCCcCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCC-------eEcCCEEEEeeCCCeEEECCCC
Confidence            344589999999999999999999999999999999999999999876442       5999999999999999999998


Q ss_pred             CCCCCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCC
Q 029122          101 LGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ  180 (198)
Q Consensus       101 ~~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~  180 (198)
                      .+++.++.++++..+++|+..++|+++|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|+..+++
T Consensus        78 ~~~g~gg~si~g~~f~de~~~~~h~~~G~lsma~~gp~t~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~  157 (185)
T 4fru_A           78 RGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTD  157 (185)
T ss_dssp             TSSSSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBC
T ss_pred             CCCCCCCccccCCccCccccccCcCCCeEEEEeeCCCCCcceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999977654


Q ss_pred             -CCCcccceEEeeeeeec
Q 029122          181 -SGEPKSKVVISNSGEMA  197 (198)
Q Consensus       181 -~~~P~~~i~I~~cg~l~  197 (198)
                       +++|.++|+|.+||+|.
T Consensus       158 ~~~~P~~~v~I~~~g~l~  175 (185)
T 4fru_A          158 GRDKPLKDVTIADCGKIE  175 (185)
T ss_dssp             TTSCBSSCEEEEEEEEEE
T ss_pred             CCCcCCCCEEEEEceEEe
Confidence             68999999999999985

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=2.9e-53  Score=335.81  Aligned_cols=170  Identities=64%  Similarity=1.111  Sum_probs=158.0

Q ss_pred             ccccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCccc-ccCCEEEEeecCceEEecC
Q 029122           20 SREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGD   98 (198)
Q Consensus        20 ~~~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~Gd   98 (198)
                      .....|+++++|||||.+++|++|+|+||||++.||++|+||++||+|.+|        | |+|+.||||+|+|+|||||
T Consensus         7 ~~~~~p~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~FhRvi~~f~iQgGd   78 (188)
T 3ich_A            7 EKKKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKG--------FGYKNSKFHRVIKDFMIQGGD   78 (188)
T ss_dssp             --CCSCEEEEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS--------CSSTTCBCCEEETTTEEEECC
T ss_pred             CCCCCCCcCCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccCC--------ccccCCEEEEEECCCEEEcCC
Confidence            344567889999999999999999999999999999999999999987666        7 9999999999999999999


Q ss_pred             CcCCCCCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC
Q 029122           99 FTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG  178 (198)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~  178 (198)
                      +..+++.+++++|+..+++|+..++|+++|+|+|++.++++++|||||++.++++||++|+|||||++|||||++|+..+
T Consensus        79 ~~~~~g~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~  158 (188)
T 3ich_A           79 FTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTK  158 (188)
T ss_dssp             TTTSSSSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSC
T ss_pred             ccCCCCCCCccccCCcccccccCcccCCCeEEEEccCCCCCcccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCC
Confidence            77788899999999999999989999999999999999999999999999999999999999999999999999999776


Q ss_pred             CC-CCCcccceEEeeeeeec
Q 029122          179 RQ-SGEPKSKVVISNSGEMA  197 (198)
Q Consensus       179 ~~-~~~P~~~i~I~~cg~l~  197 (198)
                      +. +++|.++|+|.+||+|.
T Consensus       159 ~~~~~~P~~~v~I~~~~~l~  178 (188)
T 3ich_A          159 TDSRDKPLKDVIIADCGKIE  178 (188)
T ss_dssp             BCTTSCBSSCEEEEEEEEEE
T ss_pred             cCCCCeECCCEEEEEeEEEe
Confidence            55 46999999999999984

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=1.2e-52  Score=333.62  Aligned_cols=165  Identities=56%  Similarity=0.964  Sum_probs=156.6

Q ss_pred             cccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCccc-ccCCEEEEeecCceEEecCCcCCC
Q 029122           25 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFTLGD  103 (198)
Q Consensus        25 ~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~Gd~~~~~  103 (198)
                      ...+++||||+.+++|++|+|+||||++.||++|+||++||++++|        | |+|+.||||+|+|+|||||+..++
T Consensus        24 ~~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g--------~~Y~g~~FhRvi~~f~iQgGd~~~~~   95 (193)
T 3k2c_A           24 KEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKG--------EGYKGSTFHRIIPGFMVQGGDYTAHN   95 (193)
T ss_dssp             --CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTT--------SSSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             ccCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccC--------CcccCCEEEEEeCCCEEEeCCCCCCC
Confidence            3567899999999999999999999999999999999999987765        5 999999999999999999988788


Q ss_pred             CCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCC
Q 029122          104 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE  183 (198)
Q Consensus       104 ~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~  183 (198)
                      +.+++++|++.+++|+..++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|++.++++++
T Consensus        96 g~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~gp~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~g~  175 (193)
T 3k2c_A           96 GTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQ  175 (193)
T ss_dssp             SSCCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCC
T ss_pred             CcCCcccCCCcccccccccccCCCcEEEEEeCCCCCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998888999


Q ss_pred             cc--cceEEeeeeeec
Q 029122          184 PK--SKVVISNSGEMA  197 (198)
Q Consensus       184 P~--~~i~I~~cg~l~  197 (198)
                      |.  ++|+|.+||+|+
T Consensus       176 P~~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          176 VKKGYRIEIRDCGVLG  191 (193)
T ss_dssp             CCTTCCEEEEEEEECC
T ss_pred             CccCccEEEEEceEeC
Confidence            99  999999999986

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.1e-51  Score=334.71  Aligned_cols=168  Identities=47%  Similarity=0.851  Sum_probs=157.9

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG  106 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~  106 (198)
                      .+++||||+.++++++|+|+||||++.||++|+||++||++++|.+  |+..||+|+.||||+|+|+|||||+..+++.+
T Consensus        58 ~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~--g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~G~G  135 (229)
T 1z81_A           58 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN--NLPVGYKNTIFHRVIKEFMIQGGDFINHNGSG  135 (229)
T ss_dssp             TCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS--SSBCSSTTEECCEEETTTEEEECCTTTSSSCC
T ss_pred             CCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCc--CCCceECCCEEEEEeCCCEEEcCCCcCCCCCC
Confidence            4789999999999999999999999999999999999999876543  56778999999999999999999998788999


Q ss_pred             CccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEE--cCHHHHHHHHhCCCCC--C
Q 029122          107 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL--SGMDVVRKIEAEGRQS--G  182 (198)
Q Consensus       107 ~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi--~G~~vl~~I~~~~~~~--~  182 (198)
                      ++++|+..+++|+..++|+++|+|+|++.++++++|||||++.++|+||++|+|||||+  +|||||++|+..++.+  +
T Consensus       136 g~siyg~~f~dE~~~l~h~~~G~LsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~  215 (229)
T 1z81_A          136 SLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIY  215 (229)
T ss_dssp             CCBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTC
T ss_pred             CCccCCCcccccccccccCCCcEEEeccCCCCCcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999  9999999999877654  8


Q ss_pred             CcccceEEeeeeee
Q 029122          183 EPKSKVVISNSGEM  196 (198)
Q Consensus       183 ~P~~~i~I~~cg~l  196 (198)
                      +|+++|+|.+||+|
T Consensus       216 ~P~~~V~I~~cG~l  229 (229)
T 1z81_A          216 KPKIPINVVECGEL  229 (229)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             CCCCCeEEEeCeeC
Confidence            99999999999987

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=8.1e-52  Score=323.56  Aligned_cols=161  Identities=60%  Similarity=1.060  Sum_probs=122.1

Q ss_pred             cCcEEEEEEEEC--C---EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCccc-ccCCEEEEeecCceEEecCCc
Q 029122           27 VTHKVYFDIEVG--G---KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY-YKGSSFHRIIPSFMIQGGDFT  100 (198)
Q Consensus        27 ~~~~v~~di~v~--~---t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~-Y~g~~f~rv~~~~~iq~Gd~~  100 (198)
                      ++ +|||||.++  +   |++|+|+||||++.||++|+||++||++.+|        | |+|+.||||+|+|+|||||+.
T Consensus         2 it-~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g--------~~Y~g~~fhRvi~~f~iQgGd~~   72 (172)
T 2c3b_A            2 MS-QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG--------EGYRESTFHRIIPNFMIQGGDFT   72 (172)
T ss_dssp             CC-CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT--------TSSTTCBCCEEETTTEEEECC--
T ss_pred             ce-EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCC--------cccCCCEEEEEeCCCEEEeCCcC
Confidence            46 999999998  5   5669999999999999999999999987765        6 999999999999999999966


Q ss_pred             CCCCCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEc--CHHHHHHHHhCC
Q 029122          101 LGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLS--GMDVVRKIEAEG  178 (198)
Q Consensus       101 ~~~~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~--G~~vl~~I~~~~  178 (198)
                      .+++.+++++|++.+++|+..++|+++|+|+|++.++++++|||||++.++|+||++|+|||||++  |||||++|++.+
T Consensus        73 ~~~g~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~gp~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~  152 (172)
T 2c3b_A           73 RGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALG  152 (172)
T ss_dssp             --------------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTC
T ss_pred             CCCCCCCcccCCCcccCcccccccCCCeEEEEeeCCCCCcccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCC
Confidence            688888999999999999889999999999999999999999999999999999999999999999  999999999887


Q ss_pred             CCCC--CcccceEEeeeeee
Q 029122          179 RQSG--EPKSKVVISNSGEM  196 (198)
Q Consensus       179 ~~~~--~P~~~i~I~~cg~l  196 (198)
                      ++++  +|.++|+|.+||+|
T Consensus       153 t~~~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          153 SSSGSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             CTTSCCCSSSCCEEEEEEEC
T ss_pred             CCCCCccCCCCeEEEeCeeC
Confidence            7665  99999999999986

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=4.5e-49  Score=340.72  Aligned_cols=170  Identities=59%  Similarity=1.034  Sum_probs=161.4

Q ss_pred             CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCC-CCcccccCCEEEEeecCceEEecCCcCCCCCC
Q 029122           28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKS-GKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG  106 (198)
Q Consensus        28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~-~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~  106 (198)
                      +++||||+.+++++.|+|+||||++.||+||+||++||++.+|++.. |+..||+|+.||||+|+|+|||||+..++|.+
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g~g   94 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTG   94 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSSSC
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCCCC
Confidence            78999999999999999999999999999999999999998887544 66779999999999999999999999888999


Q ss_pred             CccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCccc
Q 029122          107 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS  186 (198)
Q Consensus       107 ~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~  186 (198)
                      ++++||..+++|+..++|+++|+|+|++.+|++++||||||+.+.|+||++|+|||+|++||+|+++|+..++..++|.+
T Consensus        95 ~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~~~~~~sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~~~P~~  174 (370)
T 1ihg_A           95 GESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAK  174 (370)
T ss_dssp             CCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESS
T ss_pred             CCCCCCCCcCCCcCCcCCCCCeEEEEeeCCCCCCCceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCCCccce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987766699999


Q ss_pred             ceEEeeeeeec
Q 029122          187 KVVISNSGEMA  197 (198)
Q Consensus       187 ~i~I~~cg~l~  197 (198)
                      +|+|.+||++.
T Consensus       175 ~v~I~~~g~l~  185 (370)
T 1ihg_A          175 LCVIAECGELK  185 (370)
T ss_dssp             CEEEEEEEEEC
T ss_pred             eEEEEEEEEec
Confidence            99999999984

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=5.8e-49  Score=320.49  Aligned_cols=169  Identities=30%  Similarity=0.471  Sum_probs=145.7

Q ss_pred             ccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCC------CC----CCccc-ccCCEEEEeecCceE
Q 029122           26 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIG------KS----GKPLY-YKGSSFHRIIPSFMI   94 (198)
Q Consensus        26 ~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~------~~----~~~~~-Y~g~~f~rv~~~~~i   94 (198)
                      ..+++||||+.+++|++|+|+||||++.||++|+||++||++.+.+.      ..    |+ .| |+|+.||||+|+|||
T Consensus        12 ~~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~-~~~Y~gt~FHRVi~~Fmi   90 (234)
T 2ose_A           12 GKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHI-NRTYEGCKFHNVLHNNYI   90 (234)
T ss_dssp             CSSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC----------------CCCSTTCBCCEEETTTEE
T ss_pred             CCCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCC-ceEECCcEEEEEECCCEE
Confidence            45789999999999999999999999999999999999999762211      11    12 15 999999999999999


Q ss_pred             EecCCcCCCCCCCccccCCc-----ccCcccCcccCCCeEEEeee----cCCCCCCceEEEEccC------CcCCCCCce
Q 029122           95 QGGDFTLGDGRGGESIFGES-----FADENFKLKHTGPGVLSMAN----AGPDTNGSQFFITTVI------TSWLDGRHV  159 (198)
Q Consensus        95 q~Gd~~~~~~~~~~~~~~~~-----~~~e~~~~~~~~~G~ls~~~----~~~~~~~sqF~Itl~~------~~~ld~~~~  159 (198)
                      ||||+..+++.+++++|+..     ++  +..++|.++|+|||++    .++++++|||||++.+      .|+||++|+
T Consensus        91 QgGd~~~g~G~Gg~siyg~~~~p~~f~--~~~l~h~~~G~lsMAn~~~~~gpntngSQFFIt~~~~~~~~g~p~LDg~~t  168 (234)
T 2ose_A           91 VSGDIYNSNGSSAGTVYCDEPIPPVFG--DYFYPHESKGLLSLVPYTDESGNRYYDSTFMITLDDIRPSNVLDELDRDQV  168 (234)
T ss_dssp             EECCCC----CCCCCTTTTCCBCCCCC--SCCCCSCSTTEEEECCEECTTSCEEBCSCEEEESSCCCTTSSGGGSCTTSE
T ss_pred             EcCCccCCCCCCCccccCCccCccccc--CcCccCCCCCEEEEecccccCCCCCccceEEEEecCccccCCCcccCCCee
Confidence            99997778899999999887     55  4578999999999999    8999999999999999      999999999


Q ss_pred             EEEEEEcCHHHHHHHHhCCCC-CCCcccceEEeeeeeec
Q 029122          160 VFGKVLSGMDVVRKIEAEGRQ-SGEPKSKVVISNSGEMA  197 (198)
Q Consensus       160 vfG~Vi~G~~vl~~I~~~~~~-~~~P~~~i~I~~cg~l~  197 (198)
                      |||||++|||||++|+..++. +++|.++|+|.+||+|+
T Consensus       169 VFG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~I~~~~~l~  207 (234)
T 2ose_A          169 VIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYL  207 (234)
T ss_dssp             EEEEEEECHHHHHHHHHHTCCCTTCCCCCEEEEEEEECC
T ss_pred             EEEEEeCCHHHHHHHHhCCcCCCCCccCCEEEEEEEEec
Confidence            999999999999999976554 48999999999999985

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=2e-47  Score=303.74  Aligned_cols=161  Identities=42%  Similarity=0.712  Sum_probs=146.3

Q ss_pred             cccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCc
Q 029122           21 REELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFT  100 (198)
Q Consensus        21 ~~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~  100 (198)
                      +-..++....|.++     |+.|+|+||||++.||++|+||++||+.+          ||+|+.||||+|+|+|||||+.
T Consensus        12 ~~~~~~~~~~v~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~~g----------~Ydg~~FhRVi~~f~iQgGd~~   76 (197)
T 1zkc_A           12 SGLVPRGSGYVRLH-----TNKGDLNLELHCDLTPKTCENFIRLCKKH----------YYDGTIFHRSIRNFVIQGGDPT   76 (197)
T ss_dssp             CCCCCCSCEEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTT----------TTTTEEEEEEETTTEEEECCTT
T ss_pred             cCCCCCCCcEEEEE-----eCCccEEEEEcCCCCcHHHHHHHHHHhcC----------CCCCCEEEEEeCCCEEEcCCCC
Confidence            34455666667776     78999999999999999999999999643          8999999999999999999987


Q ss_pred             CCCCCCCccccCCcccCcc-cCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC
Q 029122          101 LGDGRGGESIFGESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR  179 (198)
Q Consensus       101 ~~~~~~~~~~~~~~~~~e~-~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~  179 (198)
                       +++.+++++|+..+++|. ..++|+++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|+..++
T Consensus        77 -~~g~Gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~gp~sngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t  155 (197)
T 1zkc_A           77 -GTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVES  155 (197)
T ss_dssp             -SSSSCCCBTTBSCBCCCCCTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCB
T ss_pred             -CCCCCCCccCCCccccccCcCcCCCCceEEEEecCCCCCcccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCC
Confidence             778888999999999994 678999999999999999999999999999999999999999999999999999998776


Q ss_pred             CC--CCcccceEEeeeeeec
Q 029122          180 QS--GEPKSKVVISNSGEMA  197 (198)
Q Consensus       180 ~~--~~P~~~i~I~~cg~l~  197 (198)
                      ..  ++|.++|+|.+|++++
T Consensus       156 ~~~~~~P~~~i~I~~~~v~~  175 (197)
T 1zkc_A          156 DPKTDRPKEEIRIDATTVFV  175 (197)
T ss_dssp             CTTTCCBSSCCEEEEEEEEE
T ss_pred             CCCCCCcCCCeEEEEEEEEc
Confidence            54  8999999999999985

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=1.2e-47  Score=298.44  Aligned_cols=154  Identities=49%  Similarity=0.850  Sum_probs=142.7

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG  106 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~  106 (198)
                      .+.+|.++     |++|+|+||||++.||++|+||++||+.+          ||+|+.||||+|+|+|||||+. +++.+
T Consensus        10 ~~~~v~l~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~g   73 (166)
T 2x7k_A           10 QPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARRG----------YYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (166)
T ss_dssp             CCSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHHT----------TTTTEECCEEETTTEEEECCTT-SSSSC
T ss_pred             CCCEEEEE-----eCCCcEEEEEccCCCCHHHHHHHHHHhcC----------CCCCCEEEEEECCCEEEcCCCC-CCCCC
Confidence            45788888     78999999999999999999999999643          8999999999999999999987 77888


Q ss_pred             CccccCCcccCcc-cCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCC-CCCc
Q 029122          107 GESIFGESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-SGEP  184 (198)
Q Consensus       107 ~~~~~~~~~~~e~-~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~P  184 (198)
                      ++++|+..+++|. ..++|.++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|+..++. +++|
T Consensus        74 g~si~g~~~~dE~~~~l~h~~~G~lsmAn~gp~s~gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P  153 (166)
T 2x7k_A           74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP  153 (166)
T ss_dssp             CCCTTSSCBCCCCCTTSCCCSTTEEEECBSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCB
T ss_pred             CCccCCCccccccccccCCCCCeEEEEeeCCCCCccceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCc
Confidence            8999999999998 4789988999999999999999999999999999999999999999999999999977654 4799


Q ss_pred             ccceEEeeeeee
Q 029122          185 KSKVVISNSGEM  196 (198)
Q Consensus       185 ~~~i~I~~cg~l  196 (198)
                      .++|+|.+|.++
T Consensus       154 ~~~i~I~~~~i~  165 (166)
T 2x7k_A          154 VDDVKIIKAYPS  165 (166)
T ss_dssp             SSCCEEEEEEEC
T ss_pred             CCCeEEEEEEEe
Confidence            999999999986

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=1.3e-47  Score=296.52  Aligned_cols=154  Identities=45%  Similarity=0.726  Sum_probs=141.4

Q ss_pred             CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCC
Q 029122           28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG  107 (198)
Q Consensus        28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~  107 (198)
                      ...|.++     |+.|+|+||||++.||++|+||++||+.+          ||+|+.||||+|+|+|||||+. +++.++
T Consensus         5 ~~~v~~~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg   68 (160)
T 2fu0_A            5 PKSAIIY-----TTMGDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPS-GDGTGG   68 (160)
T ss_dssp             CCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTCBCCEEETTTEEEECCTT-SSSSCC
T ss_pred             CCEEEEE-----ecCccEEEEEeCCCChHHHHHHHHHhccC----------ccCCCEEEEEECCCEEEeCCcC-CCCCCC
Confidence            4556666     88999999999999999999999999643          8999999999999999999986 778888


Q ss_pred             ccccCCcccCccc-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCC-CCCcc
Q 029122          108 ESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-SGEPK  185 (198)
Q Consensus       108 ~~~~~~~~~~e~~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-~~~P~  185 (198)
                      +++|+..+++|.. .++|.++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|+..++. +++|.
T Consensus        69 ~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~  148 (160)
T 2fu0_A           69 ESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPL  148 (160)
T ss_dssp             CCTTSSCBCCCCBTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBS
T ss_pred             CcccCCCccccccCCcccCCceEEEEecCCCCCcccEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcC
Confidence            9999999999987 589999999999999999999999999999999999999999999999999999977654 68999


Q ss_pred             cceEEeeeeeec
Q 029122          186 SKVVISNSGEMA  197 (198)
Q Consensus       186 ~~i~I~~cg~l~  197 (198)
                      ++|+|.+|.+++
T Consensus       149 ~~v~I~~~~v~~  160 (160)
T 2fu0_A          149 EDIKILNIKINN  160 (160)
T ss_dssp             SCCBEEEEEEC-
T ss_pred             CCeEEEEEEEeC
Confidence            999999999864

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=2.1e-47  Score=302.61  Aligned_cols=164  Identities=43%  Similarity=0.661  Sum_probs=144.0

Q ss_pred             ccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCC--CC---CcccccCCEEEEeecCceEEecC
Q 029122           24 LEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK--SG---KPLYYKGSSFHRIIPSFMIQGGD   98 (198)
Q Consensus        24 ~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~--~~---~~~~Y~g~~f~rv~~~~~iq~Gd   98 (198)
                      .|+.+..|.++     |++|+|+||||++.||++|+||++||+|.+++..  .|   +.+||+|+.||||+|+|+|||||
T Consensus        19 ~~~~~~~v~l~-----t~~G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd   93 (191)
T 1w74_A           19 SPLATATATLH-----TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGD   93 (191)
T ss_dssp             --CCSEEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECC
T ss_pred             CCCCCeEEEEE-----ecceeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCC
Confidence            45556777777     8899999999999999999999999999887532  12   34799999999999999999999


Q ss_pred             CcCCCCCCCccccCCcccCcc-cCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEc--CHHHHHHHH
Q 029122           99 FTLGDGRGGESIFGESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLS--GMDVVRKIE  175 (198)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~--G~~vl~~I~  175 (198)
                      +. +++.++   ++..+++|. ..++|+++|+|+|++.++++++|||||++.++|+||++|+|||||++  |||||++|+
T Consensus        94 ~~-g~G~gg---~g~~f~dE~~~~l~h~~~G~lsMAn~gpntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~  169 (191)
T 1w74_A           94 PT-GTGRGG---PGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAIS  169 (191)
T ss_dssp             TT-SSSSCC---SSCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHH
T ss_pred             CC-CCCCCC---CCCccccccccCCCcCCCcEEEEeeCCCCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHH
Confidence            85 556655   578899994 68899999999999999999999999999999999999999999999  999999999


Q ss_pred             hCCC-CCCCcccceEEeeeeee
Q 029122          176 AEGR-QSGEPKSKVVISNSGEM  196 (198)
Q Consensus       176 ~~~~-~~~~P~~~i~I~~cg~l  196 (198)
                      ..++ .+++|.++|+|.+|+++
T Consensus       170 ~~~t~~~~~P~~~v~I~~~~i~  191 (191)
T 1w74_A          170 KTATDGNDRPTDPVVIESITIS  191 (191)
T ss_dssp             TSCBCTTSCBSSCCEEEEEEEC
T ss_pred             cCCcCCCCCcCCCeEEEEEEEC
Confidence            7765 56899999999999985

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=2.7e-47  Score=300.91  Aligned_cols=156  Identities=40%  Similarity=0.653  Sum_probs=141.9

Q ss_pred             ccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCC
Q 029122           26 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGR  105 (198)
Q Consensus        26 ~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~  105 (198)
                      .....|.++     |++|+|+||||++.||++|+||++||+++          ||+|+.||||+|+|+|||||+. +++.
T Consensus        14 ~~~~~v~i~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~   77 (185)
T 2poe_A           14 LYFQGVRII-----TNYGDLKFELFCSQCPKACKNFLALSASG----------YYKNTIFHKNIKGFIIQGGDPT-GTGK   77 (185)
T ss_dssp             -CCCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTEEEEEECTTSEEEEEETT-SSSS
T ss_pred             CCceEEEEE-----ecCccEEEEEeCCCCcHHHHHHHHHhccC----------CCCCCEEEEEECCCEEEcCCCC-CCCC
Confidence            334445554     88999999999999999999999999654          8999999999999999999987 7788


Q ss_pred             CCccccCCcccCcc-cCcccCCCeEEEeeecC----CCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC-
Q 029122          106 GGESIFGESFADEN-FKLKHTGPGVLSMANAG----PDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-  179 (198)
Q Consensus       106 ~~~~~~~~~~~~e~-~~~~~~~~G~ls~~~~~----~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~-  179 (198)
                      +++++|+..+++|. ..++|+++|+|+|++.+    +++++|||||+++++|+||++|+|||||++|||||++|+..++ 
T Consensus        78 gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~  157 (185)
T 2poe_A           78 GGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKLIDGFETLNTLENCPSD  157 (185)
T ss_dssp             CCCBTTBSCBCCCCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBC
T ss_pred             CCCccCCCcccccccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcC
Confidence            88999999999997 67899999999999998    9999999999999999999999999999999999999997765 


Q ss_pred             CCCCcccceEEeeeeeec
Q 029122          180 QSGEPKSKVVISNSGEMA  197 (198)
Q Consensus       180 ~~~~P~~~i~I~~cg~l~  197 (198)
                      .+++|.++|+|.+|++++
T Consensus       158 ~~~~P~~~v~I~~~~i~~  175 (185)
T 2poe_A          158 KSHKPIDEIIIKDIVIHS  175 (185)
T ss_dssp             TTSCBSSCCEEEEEEEEC
T ss_pred             CCCCcCCCeEEEEEEEEC
Confidence            458999999999999985

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=2.8e-47  Score=295.08  Aligned_cols=147  Identities=47%  Similarity=0.738  Sum_probs=137.8

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |++|+|+||||++.||++|+||++||+++          ||+|+.||||+|+|+|||||+. +++.+++++|+..+++|.
T Consensus         7 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~fhRvi~~f~iQgGd~~-~~g~gg~si~g~~~~dE~   75 (161)
T 2ok3_A            7 TDVGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPT-GTGRGGNSIWGKKFEDEY   75 (161)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCC
T ss_pred             eCCccEEEEEcCCCCcHHHHHHHHHhhhc----------ccCCCEEEEEECCCEEecCCCC-CCCCCCCcccCCcccccc
Confidence            88999999999999999999999999754          8999999999999999999987 778888999999999997


Q ss_pred             c-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCC--CCcccceEEeeeeee
Q 029122          120 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS--GEPKSKVVISNSGEM  196 (198)
Q Consensus       120 ~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~--~~P~~~i~I~~cg~l  196 (198)
                      . .++|+++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|++.++.+  ++|.++|+|.+|.++
T Consensus        76 ~~~l~h~~~G~lsma~~gp~s~~SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~  155 (161)
T 2ok3_A           76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH  155 (161)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEE
T ss_pred             CcCcCcCCCeEEEEecCCCCCcceEEEEEcCCCCccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEe
Confidence            5 6889999999999999999999999999999999999999999999999999999877543  799999999999998


Q ss_pred             c
Q 029122          197 A  197 (198)
Q Consensus       197 ~  197 (198)
                      +
T Consensus       156 ~  156 (161)
T 2ok3_A          156 A  156 (161)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=5.3e-47  Score=297.04  Aligned_cols=152  Identities=49%  Similarity=0.781  Sum_probs=140.0

Q ss_pred             CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCC
Q 029122           28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG  107 (198)
Q Consensus        28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~  107 (198)
                      ...|.++     |++|+|+||||++.||++|+||++||+.+          ||+|+.||||+|+|+|||||+. +++.++
T Consensus        21 ~~~v~~~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~FhRvi~~f~iQgGd~~-~~g~gg   84 (176)
T 2a2n_A           21 SDSAIIH-----TSMGDIHTKLFPVECPKTVENFCVHSRNG----------YYNGHTFHRIIKGFMIQTGDPT-GTGMGG   84 (176)
T ss_dssp             CSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTCBCCEEETTTEEEECCTT-SSSSCC
T ss_pred             CCEEEEE-----ecCccEEEEEeCCCChHHHHHHHHHhhcC----------ccCCCEEEEEECCcEEEccCCC-CCCCCC
Confidence            4455555     89999999999999999999999999644          8999999999999999999986 678888


Q ss_pred             ccccCCcccCccc-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCC--CCCc
Q 029122          108 ESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQ--SGEP  184 (198)
Q Consensus       108 ~~~~~~~~~~e~~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~--~~~P  184 (198)
                      +++|+..+++|.. .++|+++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|+..++.  +++|
T Consensus        85 ~si~g~~~~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P  164 (176)
T 2a2n_A           85 ESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKP  164 (176)
T ss_dssp             CCTTSSCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCB
T ss_pred             CcccCCccccccccccccCCceEEEEEeCCCCCcccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCcc
Confidence            9999999999987 689999999999999999999999999999999999999999999999999999987765  7899


Q ss_pred             ccceEEeeeee
Q 029122          185 KSKVVISNSGE  195 (198)
Q Consensus       185 ~~~i~I~~cg~  195 (198)
                      .++|+|.+|.+
T Consensus       165 ~~~v~I~~v~v  175 (176)
T 2a2n_A          165 YEDVSIINITV  175 (176)
T ss_dssp             SSCCBEEEEEE
T ss_pred             CCCeEEEEEEE
Confidence            99999999975

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=5.4e-47  Score=301.22  Aligned_cols=155  Identities=41%  Similarity=0.695  Sum_probs=142.2

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG  106 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~  106 (198)
                      .+.+|.|+     |++|+|+||||++.||++|+||++||+.+          ||+|+.||||+|+|+|||||+. +++.+
T Consensus        37 ~~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~~g----------~Y~g~~FhRVi~~f~iQgGd~~-~~g~g  100 (196)
T 2b71_A           37 ERGYITIY-----TNLGDFEVELYWYHSPKTCLNFYTLCEMG----------FYDNTIFHRVIPNFVIQGGDPT-GTGKG  100 (196)
T ss_dssp             HSCEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTT----------TTTTEEEEEEETTTEEEEEETT-SSSSC
T ss_pred             CCcEEEEE-----eCCCCEEEEEeCCCCcHHHHHHHHHhhcC----------CcCCCEEEEEeCCcEEEcCCCC-CCCCC
Confidence            45778888     78999999999999999999999999643          8999999999999999999997 77888


Q ss_pred             CccccCCcccCcc-cCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC-CCCCc
Q 029122          107 GESIFGESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEP  184 (198)
Q Consensus       107 ~~~~~~~~~~~e~-~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~-~~~~P  184 (198)
                      ++++|+..+++|. ..++|+++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|+..++ .+++|
T Consensus       101 g~si~g~~~~dE~~~~l~h~~~G~lsMAn~gpns~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P  180 (196)
T 2b71_A          101 GKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKP  180 (196)
T ss_dssp             CCBTTBSCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCB
T ss_pred             CCccCCCcccccccCCcCcCCCeEEEEccCCCCCcccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCC
Confidence            8999999999995 578999999999999999999999999999999999999999999999999999997765 46899


Q ss_pred             ccceEEeeeeeec
Q 029122          185 KSKVVISNSGEMA  197 (198)
Q Consensus       185 ~~~i~I~~cg~l~  197 (198)
                      .++|+|.+|.+++
T Consensus       181 ~~~i~I~~~~i~~  193 (196)
T 2b71_A          181 IFDLKILRTSTAV  193 (196)
T ss_dssp             SSCCEEEEEEC--
T ss_pred             CCCeEEEEEEEec
Confidence            9999999999875

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=7e-47  Score=301.69  Aligned_cols=155  Identities=48%  Similarity=0.845  Sum_probs=143.4

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG  106 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~  106 (198)
                      .+.+|.|+     |++|+|+||||++.||++|+||++||+.+          ||+++.||||+|+|+||+||+. +++.+
T Consensus        10 ~~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~~~g----------~Ydg~~FhRVi~~F~iQgGd~~-~~g~g   73 (203)
T 2k7n_A           10 QPPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARRG----------YYNGTKFHRIIKDFMIQGGDPT-GTGRG   73 (203)
T ss_dssp             CCSEEEEE-----ESSCEEEEEECTTTCTTHHHHHHHHHHHT----------CGGGCEEEEEETTTEEEEECSS-SSSSC
T ss_pred             CCCEEEEE-----eCCCcEEEEEccCCCcHHHHHHHHHHhcC----------ccCCCEEEEEeCCcEEEcCCCC-CCCCC
Confidence            45788888     78999999999999999999999999643          8999999999999999999987 67788


Q ss_pred             CccccCCcccCcc-cCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC-CCCCc
Q 029122          107 GESIFGESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEP  184 (198)
Q Consensus       107 ~~~~~~~~~~~e~-~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~-~~~~P  184 (198)
                      ++++|+..+++|. ..++|.++|+|+|++.++++++|||||++.++|+||++|+|||||++|||||++|+..++ ++++|
T Consensus        74 g~si~g~~f~dE~~~~l~h~~~G~lsMAn~gpnsngSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P  153 (203)
T 2k7n_A           74 GASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRP  153 (203)
T ss_dssp             CCTTSCSCBCCCCCCSSCCCSSCEEEEEESSTTCEEEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEE
T ss_pred             CCccCCCcccccccccccCCCCeEEEEeeCCCCCcccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCc
Confidence            8899999999998 478998899999999999999999999999999999999999999999999999997765 45799


Q ss_pred             ccceEEeeeeeec
Q 029122          185 KSKVVISNSGEMA  197 (198)
Q Consensus       185 ~~~i~I~~cg~l~  197 (198)
                      .++|+|.+|++++
T Consensus       154 ~~~V~I~~~~v~~  166 (203)
T 2k7n_A          154 VDDVKIIKAYPSG  166 (203)
T ss_dssp             CCCCBEEEEEECC
T ss_pred             CCCeEEEEEEEEe
Confidence            9999999999985

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=1.6e-46  Score=300.31  Aligned_cols=156  Identities=33%  Similarity=0.520  Sum_probs=135.9

Q ss_pred             ccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEec-----CCc
Q 029122           26 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGG-----DFT  100 (198)
Q Consensus        26 ~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G-----d~~  100 (198)
                      +.+..|.++     |+.|+|+||||++.||++|+||++||+.+          ||+|+.||||+|+|+||||     |+.
T Consensus         4 ~~~~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Ydg~~FhRvi~~f~iQgG~~~~~Dp~   68 (201)
T 3bo7_A            4 KKKGYLRIV-----TTQGSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAELRQPS   68 (201)
T ss_dssp             -CCEEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTCBEEEEETTTEEEECCGGGCCC-
T ss_pred             CCceEEEEE-----eCCCCEEEEEcCCCCcHHHHHHHHHHhcC----------ccCCCEEEEeeCCCEEEcCcccccCCC
Confidence            344556665     78999999999999999999999999643          8999999999999999999     986


Q ss_pred             CCCCCCCcccc-------CCcccCcc-cCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHH
Q 029122          101 LGDGRGGESIF-------GESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVR  172 (198)
Q Consensus       101 ~~~~~~~~~~~-------~~~~~~e~-~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~  172 (198)
                       +++.++.++|       +..+++|. ..++|+++|+|+|++.++++++|||||+++++|+||++|+|||||++|||||+
T Consensus        69 -~~g~gg~si~~~~~~~~g~~f~dE~~~~l~h~~~G~lsmA~~gp~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~  147 (201)
T 3bo7_A           69 -KKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLR  147 (201)
T ss_dssp             -------CCSSCCCSSTTCCCBCCCCCTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHH
T ss_pred             -CCCCCCccccccccccCCCcccCcccCCCCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEecCHHHHH
Confidence             7778888888       88899994 67899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCC-CCCcccceEEeeeeeec
Q 029122          173 KIEAEGRQ-SGEPKSKVVISNSGEMA  197 (198)
Q Consensus       173 ~I~~~~~~-~~~P~~~i~I~~cg~l~  197 (198)
                      +|+..++. +++|.++|+|.+|++|+
T Consensus       148 ~I~~~~t~~~~~P~~~i~I~~~~v~~  173 (201)
T 3bo7_A          148 QWEKLETDKKDKPLKPPKVEEIIVFK  173 (201)
T ss_dssp             HHTTCCBCTTSCBSSCCBEEEEEEEE
T ss_pred             HHHhCCcCCCCCcCCCeEEEEEEEEc
Confidence            99977654 58999999999999985

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=7.1e-46  Score=292.66  Aligned_cols=162  Identities=37%  Similarity=0.644  Sum_probs=145.2

Q ss_pred             CccccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecC
Q 029122           19 NSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGD   98 (198)
Q Consensus        19 ~~~~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd   98 (198)
                      ......|+.+.+|+|+     |++|+|+||||++.||++|+||++||+.+          ||+|+.||||+|+|+|||||
T Consensus        15 ~~~~~~~~~~~~V~l~-----T~~G~I~ieL~~~~aP~tv~NF~~L~~~g----------~Y~g~~FhRvi~~f~iQgGd   79 (185)
T 2hq6_A           15 VPRGSEPPTNGKVLLK-----TTAGDIDIELWSKEAPKACRNFIQLCLEA----------YYDNTIFHRVVPGFIVQGGD   79 (185)
T ss_dssp             CCTTCCCCCBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHHHTT----------TTTTEECCEEETTTEEEECC
T ss_pred             cccccCCCCCCEEEEE-----eCCccEEEEEeCCCCcHHHHHHHHHhhcC----------ccCCCEEEEEECCCEEEcCC
Confidence            3444556778899998     68999999999999999999999999744          89999999999999999999


Q ss_pred             CcCCCCCCCccccCCcccCccc-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHH--HHHH
Q 029122           99 FTLGDGRGGESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVV--RKIE  175 (198)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~e~~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl--~~I~  175 (198)
                      +. +++.+++++|+..+++|.. .++|+++|+|+|++.++++++|||||+++++|+||++|+|||||+ |++++  ++|+
T Consensus        80 ~~-~~g~gg~si~g~~~~dE~~~~l~h~~~G~lsMA~~g~~s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~  157 (185)
T 2hq6_A           80 PT-GTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLS  157 (185)
T ss_dssp             TT-SSSSCCCCTTSSCBCCCCBTTBCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTT
T ss_pred             CC-CCCCCCCcccCCccccccccCcccCCCeEEEEccCCCCCccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHh
Confidence            86 7788888999999999975 688889999999999999999999999999999999999999999 88775  5777


Q ss_pred             hCCC-CCCCcccceEEeeeeeec
Q 029122          176 AEGR-QSGEPKSKVVISNSGEMA  197 (198)
Q Consensus       176 ~~~~-~~~~P~~~i~I~~cg~l~  197 (198)
                      ..++ ++++|.++|+|.+|++|+
T Consensus       158 ~~~~~~~~~P~~~v~I~~~~v~~  180 (185)
T 2hq6_A          158 EVDIDDDERPHNPHKIKSCEVLF  180 (185)
T ss_dssp             CSCBCTTSCBSSCCEEEEEEEEE
T ss_pred             hCCcCCCCCCCCCeEEEEEEEeC
Confidence            6554 678999999999999985

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=4.4e-45  Score=284.16  Aligned_cols=152  Identities=32%  Similarity=0.500  Sum_probs=133.8

Q ss_pred             CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCC
Q 029122           28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG  107 (198)
Q Consensus        28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~  107 (198)
                      +++|+|+     |++|+|+||||++.||++|+||++||+.+          ||+|+.||||+|+|+|||||+....+   
T Consensus         4 ~~~v~~~-----t~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~FhRvi~~f~iQgGd~~~~~~---   65 (166)
T 1v9t_A            4 DPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVNSG----------FYNNTTFHRVIPGFMIQGGGFTEQMQ---   65 (166)
T ss_dssp             SCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTCBEEEEETTTEEEESSBCTTCC---
T ss_pred             CeEEEEE-----eCCccEEEEEcCCCCcHHHHHHHHHhccC----------CCCCCEEEEEECCcEEEcCCcCcCCC---
Confidence            5688888     89999999999999999999999999643          89999999999999999999874432   


Q ss_pred             ccccCCcccCcccCcccCCCeEEEeeec-CCCCCCceEEEEccCCcCCCCC-----ceEEEEEEcCHHHHHHHHhCCCC-
Q 029122          108 ESIFGESFADENFKLKHTGPGVLSMANA-GPDTNGSQFFITTVITSWLDGR-----HVVFGKVLSGMDVVRKIEAEGRQ-  180 (198)
Q Consensus       108 ~~~~~~~~~~e~~~~~~~~~G~ls~~~~-~~~~~~sqF~Itl~~~~~ld~~-----~~vfG~Vi~G~~vl~~I~~~~~~-  180 (198)
                      ...++.++++|.....|+.+|+|+|++. +|++++|||||++.+.++||++     |+|||||++|||||++|+..++. 
T Consensus        66 ~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~  145 (166)
T 1v9t_A           66 QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHD  145 (166)
T ss_dssp             BCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEE
T ss_pred             CCCCCCcccccccccccCCceEEEEeecCCCCCccceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCC
Confidence            2235678888876555667999999996 6999999999999999999998     99999999999999999987754 


Q ss_pred             ----CCCcccceEEeeeeeec
Q 029122          181 ----SGEPKSKVVISNSGEMA  197 (198)
Q Consensus       181 ----~~~P~~~i~I~~cg~l~  197 (198)
                          +++|.++|+|.+|.+++
T Consensus       146 ~~~~~~~P~~~v~I~~~~v~~  166 (166)
T 1v9t_A          146 VGPYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             ETTEEEEESSCCBEEEEEECC
T ss_pred             CCccCCCcCCCeEEEEEEEeC
Confidence                37899999999999874

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=3.4e-45  Score=284.30  Aligned_cols=144  Identities=35%  Similarity=0.580  Sum_probs=129.5

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |++|+|+||||++.||++|+||++||+.+          ||+|+.||||+|+|+|||||+..+.   +.++++..+++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~FhRvi~~f~iQgGd~~~~~---g~~~~g~~~~dE~   72 (164)
T 1lop_A            6 TNHGDIVIKTFDDKAPETVKNFLDYCREG----------FYNNTIFHRVINGFMIQGGGFEPGM---KQKATKEPIKNEA   72 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT----------TTTTEECCEEETTTEEEESSEETTT---EECCCCCCBCCCC
T ss_pred             eCCCCEEEEEeCCCCcHHHHHHHHHHhcC----------CCCCCEEEEEeCCceEecCCcccCC---CcCCCCCcccccc
Confidence            88999999999999999999999999643          8999999999999999999997443   4456788999998


Q ss_pred             cC-cccCCCeEEEeeec-CCCCCCceEEEEccCCcCCCCC--------ceEEEEEEcCHHHHHHHHhCCCC-----CCCc
Q 029122          120 FK-LKHTGPGVLSMANA-GPDTNGSQFFITTVITSWLDGR--------HVVFGKVLSGMDVVRKIEAEGRQ-----SGEP  184 (198)
Q Consensus       120 ~~-~~~~~~G~ls~~~~-~~~~~~sqF~Itl~~~~~ld~~--------~~vfG~Vi~G~~vl~~I~~~~~~-----~~~P  184 (198)
                      .. ++| .+|+|+|++. +|++++|||||++.+.++||++        |+|||||++|||||++|+..++.     +++|
T Consensus        73 ~~~l~~-~~G~lsmA~~~~p~s~gSQFfI~~~~~~~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P  151 (164)
T 1lop_A           73 NNGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVP  151 (164)
T ss_dssp             CSSCCC-CTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEE
T ss_pred             cccccc-CccEEEEeecCCCCCccceEEEEcCCccccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCc
Confidence            64 555 6999999974 7999999999999999999998        99999999999999999987764     4799


Q ss_pred             ccceEEeeeeeec
Q 029122          185 KSKVVISNSGEMA  197 (198)
Q Consensus       185 ~~~i~I~~cg~l~  197 (198)
                      .++|+|.+|++++
T Consensus       152 ~~~v~I~~~~v~~  164 (164)
T 1lop_A          152 KEDVIIESVTVSE  164 (164)
T ss_dssp             SSCCEEEEEEECC
T ss_pred             CCCeEEEEEEEeC
Confidence            9999999999975

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=1.5e-44  Score=293.96  Aligned_cols=163  Identities=31%  Similarity=0.530  Sum_probs=144.4

Q ss_pred             cCccccccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEec
Q 029122           18 GNSREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGG   97 (198)
Q Consensus        18 ~~~~~~~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~G   97 (198)
                      .+.....|+.+.+|+|+     |++|+|+||||++.||++|+||++||+++          ||+|+.||||+|+|+||||
T Consensus        11 ~~~~~~~p~~~~~V~l~-----T~~G~I~ieL~~d~aP~tv~NF~~L~~~g----------~Ydgt~FhRVi~~FmiQgG   75 (232)
T 3bkp_A           11 RENLYFQGSTRGKVVLH-----TSLGDLDVELWARECPLACRNFVQLCLEG----------YYVNTIFHRVVKDFIVQGG   75 (232)
T ss_dssp             -CGGGCCCSCBCEEEEE-----ETTEEEEEEEBTTTCHHHHHHHHHHHHHT----------TTTTCBEEEEETTTEEEEC
T ss_pred             cccccccCCCCCEEEEE-----ECCCcEEEEEcCCCCcHHHHHHHHHhhcC----------ccCCCEEEEEeCCCEEEcC
Confidence            34455667788899998     78999999999999999999999999744          8999999999999999999


Q ss_pred             CCcCCCCCCCcccc--CCcccCccc-CcccCCCeEEEeeecCC--------------CCCCceEEEEccCCcCCCCCceE
Q 029122           98 DFTLGDGRGGESIF--GESFADENF-KLKHTGPGVLSMANAGP--------------DTNGSQFFITTVITSWLDGRHVV  160 (198)
Q Consensus        98 d~~~~~~~~~~~~~--~~~~~~e~~-~~~~~~~G~ls~~~~~~--------------~~~~sqF~Itl~~~~~ld~~~~v  160 (198)
                      |+. +++.+++++|  +..+++|.. .++|+.+|+|+|++.++              ++++|||||+++++|+||++|+|
T Consensus        76 dp~-~~G~Gg~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tV  154 (232)
T 3bkp_A           76 DPT-GTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTL  154 (232)
T ss_dssp             CTT-SSSSCCCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC----------------CBCSCEEEESSCCGGGTTTSCE
T ss_pred             CCC-CCCCCCCccccCCCccCCccccCcCcCCCeEEEEeccCCcccccccccccccCCCcCCEEEEECCCCcccCCCccE
Confidence            997 7788888999  899999975 68899999999999887              69999999999999999999999


Q ss_pred             EEEEEcCHHH--HHHHHhCCC-CCCCcccceEEeeeeeec
Q 029122          161 FGKVLSGMDV--VRKIEAEGR-QSGEPKSKVVISNSGEMA  197 (198)
Q Consensus       161 fG~Vi~G~~v--l~~I~~~~~-~~~~P~~~i~I~~cg~l~  197 (198)
                      ||+|+ ||++  |++|+..++ .+++|.++|+|.+|++|+
T Consensus       155 FG~Vv-g~~v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~  193 (232)
T 3bkp_A          155 FGKVT-GHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLW  193 (232)
T ss_dssp             EEEEC-GGGHHHHHHHTTSCBCGGGCBSSCCBEEEEEEEE
T ss_pred             EEEEE-eCchHHHHHHHcCCcCCCCCcCCCeEEEEEEEEc
Confidence            99999 6655  889997664 578999999999999985

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=4.3e-44  Score=278.93  Aligned_cols=150  Identities=33%  Similarity=0.465  Sum_probs=130.4

Q ss_pred             cEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCc
Q 029122           29 HKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGE  108 (198)
Q Consensus        29 ~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~  108 (198)
                      ++|.++     |++|+|+||||++.||++|+||++||+.+          ||+|+.||||+|+|+|||||+..+.+   .
T Consensus         4 ~~v~l~-----T~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~FhRvi~~f~iQgGd~~~~~~---~   65 (167)
T 3s6m_A            4 SMVELH-----TNHGVIKLELDEAKAPKTVENFLNYVKKG----------HYDGTIFHRVINGFMIQGGGFEPGLK---Q   65 (167)
T ss_dssp             CEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHHT----------TTTTEECCEEETTTEEEESSEETTTE---E
T ss_pred             cEEEEE-----eCCceEEEEEeCCCCcHHHHHHHHHhhhc----------ccCCCEeEEecCCcEEEeccccCCCC---C
Confidence            466666     89999999999999999999999999644          89999999999999999999874432   2


Q ss_pred             cccCCcccCcccCcccCCCeEEEeee-cCCCCCCceEEEEccCCcCCCCC--------ceEEEEEEcCHHHHHHHHhCCC
Q 029122          109 SIFGESFADENFKLKHTGPGVLSMAN-AGPDTNGSQFFITTVITSWLDGR--------HVVFGKVLSGMDVVRKIEAEGR  179 (198)
Q Consensus       109 ~~~~~~~~~e~~~~~~~~~G~ls~~~-~~~~~~~sqF~Itl~~~~~ld~~--------~~vfG~Vi~G~~vl~~I~~~~~  179 (198)
                      ..++..+++|.....++.+|+|+|++ .++++++|||||++.+.++||++        |+|||||++|||||++|++.++
T Consensus        66 ~~~~~~~~~E~~~~l~~~~G~lsmA~~~~p~t~gSQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t  145 (167)
T 3s6m_A           66 KPTDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKT  145 (167)
T ss_dssp             CCCCCCBCCCGGGCCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCB
T ss_pred             CCCCCccCCcccccccCCccEEEEecCCCCCCccceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCc
Confidence            34567788886543344899999999 67999999999999999999998        9999999999999999997765


Q ss_pred             C-----CCCcccceEEeeeeee
Q 029122          180 Q-----SGEPKSKVVISNSGEM  196 (198)
Q Consensus       180 ~-----~~~P~~~i~I~~cg~l  196 (198)
                      +     +++|+++|+|.+|.+|
T Consensus       146 ~~~~~~~~~P~~~v~I~~~~il  167 (167)
T 3s6m_A          146 GSKGFHQDVPNDDVVIEKAVVV  167 (167)
T ss_dssp             BC---CBTCBSSCCEEEEEEEC
T ss_pred             CCCcccCCCcCCCeEEEEEEEC
Confidence            4     4799999999999886

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=4.2e-38  Score=269.89  Aligned_cols=157  Identities=22%  Similarity=0.361  Sum_probs=129.4

Q ss_pred             CccccccccCcEEEEEEEEC-----CEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCce
Q 029122           19 NSREELEKVTHKVYFDIEVG-----GKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFM   93 (198)
Q Consensus        19 ~~~~~~~~~~~~v~~di~v~-----~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~   93 (198)
                      ......|.++.+++++|.++     +++.|+|+||||++.||+||+||++||+.+          ||+|+.|||| ++|+
T Consensus       159 ~~y~~~P~l~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~G----------fYdGt~FHRV-~gFm  227 (369)
T 3rfy_A          159 EEYRNMPLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVERH----------FYDGMEIQRS-DGFV  227 (369)
T ss_dssp             SSCTTSCEECSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHTT----------TTTTEECEEE-EEEE
T ss_pred             hhcccCccCCCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhcC----------CcCCCeeeee-CCee
Confidence            34556678888888888875     246999999999999999999999999643          8999999999 9999


Q ss_pred             EEecCCcCCCCCC---------------------CccccCCcccCcc-----cCcccCCCeEEEeeec--CCCCCCceEE
Q 029122           94 IQGGDFTLGDGRG---------------------GESIFGESFADEN-----FKLKHTGPGVLSMANA--GPDTNGSQFF  145 (198)
Q Consensus        94 iq~Gd~~~~~~~~---------------------~~~~~~~~~~~e~-----~~~~~~~~G~ls~~~~--~~~~~~sqF~  145 (198)
                      |||||+. +++.+                     +.++|+..+++|+     ..++|+.+|+|+|+++  ++++++||||
T Consensus       228 IQgGDp~-g~G~G~~~~~~g~~~~iP~E~~~~G~g~piyg~~fedegf~~~~~~L~h~~~G~LsMAns~~gPnSngSQFF  306 (369)
T 3rfy_A          228 VQTGDPE-GPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTMAMAREEFENDSGSSQVF  306 (369)
T ss_dssp             ECCCCCC-CCCSCCCSCCCCCCCSSSSSSCSSSSCCSCCCSSTGGGTEEEEEEEECCCCCCCCCCSSCCCCCCCSSCCCC
T ss_pred             EecCCCC-CCCCCccCcccCcCcccCccccccCCCCCcCCCccccccccccccccccCCCceEEEeecCCCCCCccceEE
Confidence            9999997 44433                     3456677777764     3678899999999997  8999999999


Q ss_pred             EEcc-------CCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCcccceEEee
Q 029122          146 ITTV-------ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISN  192 (198)
Q Consensus       146 Itl~-------~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~~i~I~~  192 (198)
                      |+++       +.++||++|+|||||++|||||++|+..     .....|+|.+
T Consensus       307 Itl~d~~L~~~~~~~LDgkytVFG~VveGmdVVdkI~~G-----D~I~sv~I~~  355 (369)
T 3rfy_A          307 WLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVG-----DVIESIQVVS  355 (369)
T ss_dssp             CCCEEEEECSCCCSSSCSCEEEEEEEEESTTGGGGCCTT-----CEEEEEEEEE
T ss_pred             EEecccccCCCCCcccCCCeeEEEEEecCHHHHHHHhCC-----CceEEEEEec
Confidence            9994       6899999999999999999999999863     2344455543

>3kop_A Uncharacterized protein; protein with A cyclophilin-like fold, structural genomics, J center for structural genomics, JCSG; 1.90A {Arthrobacter SP}

Probab=95.69  E-value=0.095  Score=40.22  Aligned_cols=118  Identities=16%  Similarity=0.163  Sum_probs=67.3

Q ss_pred             EEEEEEECCEEee-EEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecC--ceEEecCCcCCCCCCC
Q 029122           31 VYFDIEVGGKPIG-RIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPS--FMIQGGDFTLGDGRGG  107 (198)
Q Consensus        31 v~~di~v~~t~~G-~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~--~~iq~Gd~~~~~~~~~  107 (198)
                      -|++|.+..  .| .++.+|..+.||+||+.|+++-=             |.+..+|-..-+  .|+--++..       
T Consensus        22 r~i~itl~~--~g~~~~A~Lldd~APkTcaA~~~~LP-------------~~~~viHarwSGeeVy~~lp~f~-------   79 (188)
T 3kop_A           22 RYINITLEK--RGVTCKALLLDDVAPRTSKAVWDALP-------------QSSQVFHGKYARNEIYNLVPAFA-------   79 (188)
T ss_dssp             CEEEEEETT--TTEEEEEEECTTTSHHHHHHHHHHCC-------------EEEECEECSSSSSEEEEEEECCS-------
T ss_pred             eEEEEEEec--CCeEEEEEEccccChHHHHHHHHhCC-------------CCcceEEEEEecceEEEECCccc-------
Confidence            366666642  34 38899999999999999999761             444444444333  233333321       


Q ss_pred             ccccCCcccCcccCcccCCCeEEEeeec-----C-------------CCCCCceEEEEccCCcC-CCCC-----ceEEEE
Q 029122          108 ESIFGESFADENFKLKHTGPGVLSMANA-----G-------------PDTNGSQFFITTVITSW-LDGR-----HVVFGK  163 (198)
Q Consensus       108 ~~~~~~~~~~e~~~~~~~~~G~ls~~~~-----~-------------~~~~~sqF~Itl~~~~~-ld~~-----~~vfG~  163 (198)
                          -...+.||.... ..+|-|++-.-     |             ......++.|.-+.+.. +.++     -.+|++
T Consensus        80 ----~~~~g~EN~T~~-P~pGDIl~f~f~p~~lG~~~yGy~~~~~~~~~~~~~dl~ifYG~~~~l~~~~~GwlpGN~F~T  154 (188)
T 3kop_A           80 ----PKEPGAENTTVT-PIPGDVCYFTFTSNDLKTPSHGYEADSGTDEVQTIVDLAVFYGRNNLLLNGDTGWVPGNVFAT  154 (188)
T ss_dssp             ----SSCCCSCSEESS-CCTTEEEEEEEEHHHHSSGGGCC--------CCEEEEEEEECSSSCCCEETTTEECCEEEEEE
T ss_pred             ----ccCCCcCCCCCC-CCCCcEEEEecCCcccCCccccccccccccCCCcceEEEEEecccccccccccceecCcEEEE
Confidence                012344544322 24777766310     1             01122466666655442 1221     368999


Q ss_pred             EEcCHHHHHHHH
Q 029122          164 VLSGMDVVRKIE  175 (198)
Q Consensus       164 Vi~G~~vl~~I~  175 (198)
                      |++|.|-|.++-
T Consensus       155 IveGle~la~~c  166 (188)
T 3kop_A          155 IVEGLDEMAAAC  166 (188)
T ss_dssp             EEESHHHHHHHH
T ss_pred             EecCHHHHHHHH
Confidence            999999887764

>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}

Probab=94.79  E-value=0.033  Score=41.82  Aligned_cols=106  Identities=16%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             EEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccC
Q 029122           33 FDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFG  112 (198)
Q Consensus        33 ~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~  112 (198)
                      +.|.+++   ..++++|+.+.||++|+.|+++-=             +... +.+. -+-.+ + +..    .      .
T Consensus        32 I~i~~~~---~~~~a~L~D~~aP~Ta~~f~~~LP-------------l~~~-~~~~-g~E~y-~-~lp----~------~   81 (153)
T 2nnz_A           32 LRIRFES---AECEVELYEEWAPETVRAIADALP-------------IKST-ANRW-GDEIY-F-TTQ----V------A   81 (153)
T ss_dssp             EEEEETT---EEEEECCCTTSCHHHHHHHHHTCS-------------EEEE-EEEE-TTEEE-E-CCS----C------C
T ss_pred             EEEEECC---EEEEEEEcCCCCHHHHHHHHHhCC-------------cEEE-HHhh-CCcEE-E-ECC----C------C
Confidence            5555665   569999999999999999999761             2221 2221 11000 0 100    0      0


Q ss_pred             CcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCC------CceEEEEEEcCHHHHHHHH
Q 029122          113 ESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDG------RHVVFGKVLSGMDVVRKIE  175 (198)
Q Consensus       113 ~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~------~~~vfG~Vi~G~~vl~~I~  175 (198)
                      -... |+.. .....|-|+....+.     .+.|..++.|...+      .-.+||+|.+|.+.|.++.
T Consensus        82 l~~~-en~~-~~~~~GDI~Yy~pg~-----~LaIFYg~~p~s~~e~~~as~~~~lG~I~~gle~L~~~~  143 (153)
T 2nnz_A           82 VEKE-ENSK-DVVELGDVAYWIPGK-----AICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGVA  143 (153)
T ss_dssp             CCCS-SCCB-CCCCTTEEEEETTTT-----EEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGCC
T ss_pred             CCCC-CCCc-ccCCCCeEEEeCCCC-----EEEEEECCccccccccccccccEEEEEEccCHHHHhhCC
Confidence            0011 2222 223578888865443     38888887653322      2478999999988776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	7e-64
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	2e-62
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	1e-61
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	2e-60
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	8e-60
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	3e-56
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	3e-56
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	1e-54
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	5e-54
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	1e-53
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	9e-52
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	3e-51
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	2e-50
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	3e-44
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	1e-42
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-38
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	5e-37
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	1e-32
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	3e-32
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	6e-30
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	3e-28
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	4e-24

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  193 bits (490), Expect = 7e-64
 Identities = 116/167 (69%), Positives = 139/167 (83%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           KV+FDI +GGK  GRIVM L+   VPKT  NFRALCTGE GIGKSGKPL++KGS FHRII
Sbjct: 5   KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P+FMIQGGDFT G+G GGESI+GE F DENFK KHTGPGVLSMANAGP+TNGSQFF+ TV
Sbjct: 65  PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
            T WLDG+HVVFG+V+ G+DVV+ +E+ G QSG+P    +I++ G++
Sbjct: 125 KTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  189 bits (480), Expect = 2e-62
 Identities = 106/165 (64%), Positives = 127/165 (76%), Gaps = 7/165 (4%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
            V+FDI   G P+G I   LF   VPKT  NFRALCTGEKG G       Y GS FHR+I
Sbjct: 3   NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG-------YAGSHFHRVI 55

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM+QGGDFT G+G GG+SI+G  FADENF+LKH  PG+LSMANAGP+TNGSQFFITTV
Sbjct: 56  PDFMLQGGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTV 115

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSG 194
           +TSWLDG+HVVFG+V+ GM+VV+ IEAEG  SG+P+S++ I+  G
Sbjct: 116 VTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  187 bits (476), Expect = 1e-61
 Identities = 99/173 (57%), Positives = 118/173 (68%), Gaps = 2/173 (1%)

Query: 26  KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGSS 84
           K   +V+ D+ + G   GRIVM L+    P+T  NF  LCTG  G GK SGKPL+YKGS+
Sbjct: 1   KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 60

Query: 85  FHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQF 144
           FHR+I +FMIQGGDFT GDG GGESI+G  F DE F +KH  P V+SMAN GP+TNGSQF
Sbjct: 61  FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 120

Query: 145 FITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSGEM 196
           FITT     L+  HVVFGKV+SG +VV KIE     S   P + VVI N GE+
Sbjct: 121 FITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  184 bits (468), Expect = 2e-60
 Identities = 104/167 (62%), Positives = 123/167 (73%), Gaps = 1/167 (0%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           KV+FDI +     GRI+  LF    P+T ENFRALCTGEK     GK L+YK S FHRII
Sbjct: 5   KVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIG-SRGKNLHYKNSIFHRII 63

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM QGGD T G+G GGESI+G SF DENF +KH  PG+LSMANAGP+TN SQFFIT V
Sbjct: 64  PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
              WLDG+HVVFGKV+ GM+VVR++E EG +SG  K  VVI++ GE+
Sbjct: 124 PCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  183 bits (465), Expect = 8e-60
 Identities = 101/168 (60%), Positives = 126/168 (75%), Gaps = 1/168 (0%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-SGKPLYYKGSSFHRI 88
           +V+FD+++GG+ +GRIV+ LF   VPKT ENFRALCTGEKGIG  +GKPL++KG  FHRI
Sbjct: 16  RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 75

Query: 89  IPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
           I  FMIQGGDF+  +G GGESI+GE F DENF  KH   G+LSMANAG +TNGSQFFITT
Sbjct: 76  IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 135

Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEM 196
           V T  LDG+HVVFG+V+ GM V + +E    +  +P    VI+  GE+
Sbjct: 136 VPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGEL 183

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  173 bits (439), Expect = 3e-56
 Identities = 104/168 (61%), Positives = 127/168 (75%), Gaps = 7/168 (4%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
            VY D++  GKP+GR+V+ L    VPKT ENFRALCTGEKG         YKGS+FHR+I
Sbjct: 4   LVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGF-------GYKGSTFHRVI 56

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           PSFM Q GDFT  +G GG+SI+G  F DENF LKH GPGVLSMANAGP+TNGSQFFI T+
Sbjct: 57  PSFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTI 116

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGEMA 197
            T WLDG+HVVFG V+ GMDVV+KIE+ G +SG    K+VI++ G+++
Sbjct: 117 KTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  173 bits (440), Expect = 3e-56
 Identities = 117/174 (67%), Positives = 130/174 (74%), Gaps = 8/174 (4%)

Query: 26  KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
           KVT +VYFD+E+GGKPIGRIV+GLFGK VPKT  NF  L    KG         Y GS F
Sbjct: 4   KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKG-------EGYPGSKF 56

Query: 86  HRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
           HR+I  FMIQGGDFT GDG GG SI+GE FADENFKLKH G G LSMANAG DTNGSQFF
Sbjct: 57  HRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFF 116

Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE-PKSKVVISNSGEMAL 198
           ITTV T WLDGRHVVFGK+L GMDVVRKIE   +  G+ PK  V+I+ SG +A+
Sbjct: 117 ITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAV 170

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  170 bits (430), Expect = 1e-54
 Identities = 107/172 (62%), Positives = 122/172 (70%), Gaps = 8/172 (4%)

Query: 26  KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
            VT KV+FD+ +G K +GRIV+GLFG  VPKTVENF AL TGEKG         YKGS F
Sbjct: 5   SVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKG-------YGYKGSIF 57

Query: 86  HRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
           HR+I  FMIQGGDFT  DG GG SI+GE+F DENFKLKH G G +SMANAGPDTNGSQFF
Sbjct: 58  HRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFF 117

Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVISNSGEM 196
           IT    +WLDG+HVVFGKVL GM VV  IE +       P +   I NSG++
Sbjct: 118 ITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKI 169

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  167 bits (424), Expect = 5e-54
 Identities = 103/166 (62%), Positives = 126/166 (75%), Gaps = 7/166 (4%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           +VY DI++G KP GRI M L    VP T ENFR LCT EKG         +KGSSFHRII
Sbjct: 3   QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGF-------GFKGSSFHRII 55

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FM QGGDFT  +G GG+SI+G+ F DENF LKHTGPG+LSMAN+GP+TNGSQFF+T  
Sbjct: 56  PQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCD 115

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKVVISNSGE 195
            T WLDG+HVVFG+V  G+DV+R+IEA+G + G+PK KV+I++ GE
Sbjct: 116 KTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 161

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  166 bits (422), Expect = 1e-53
 Identities = 98/172 (56%), Positives = 120/172 (69%), Gaps = 3/172 (1%)

Query: 26  KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSF 85
            V   V+FD+ +GG+ +GR+ + LF   VPKT ENFR  CTGE    K G P+ YKGS+F
Sbjct: 4   PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR--KDGVPIGYKGSTF 61

Query: 86  HRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFF 145
           HR+I  FMIQGGDF  GDG G  SI+   FADENFKL+H+ PG+LSMAN+GP TNG QFF
Sbjct: 62  HRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFF 121

Query: 146 ITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKSKVVISNSGEM 196
           IT     WLDG+HVVFGK++ G+ V+RKIE      + +PK  VVIS  GEM
Sbjct: 122 ITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  162 bits (411), Expect = 9e-52
 Identities = 78/171 (45%), Positives = 105/171 (61%), Gaps = 6/171 (3%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
            V+ DI +G   +G+    LF   VPKT ENFR  CTG      +  P+ YK + FHR+I
Sbjct: 18  VVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTG--EYKVNNLPVGYKNTIFHRVI 75

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
             FMIQGGDF   +G G  SI+GE F DENF +KH   G+LSMAN+GP+TNG QFFITT 
Sbjct: 76  KEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTK 135

Query: 150 ITSWLDGRHVVFGKVLSG--MDVVRKIEAE--GRQSGEPKSKVVISNSGEM 196
              WLDG++VVFG+++    + +++KIE         +PK  + +   GE+
Sbjct: 136 KCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 186

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  160 bits (406), Expect = 3e-51
 Identities = 102/173 (58%), Positives = 126/173 (72%), Gaps = 9/173 (5%)

Query: 24  LEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGS 83
           +  VT KVYFDI +G +P+GR+V+GLFG  VPKTVENF+ L +GE G G       YKGS
Sbjct: 1   MPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGS 53

Query: 84  SFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQ 143
            FHR+I +FMIQGGDFT  DG GG+SI+G  F DEN K+KH   G +SMANAGP++NGSQ
Sbjct: 54  IFHRVIRNFMIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQ 112

Query: 144 FFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEPKSKVVISNSGE 195
           FF+TT  T WLDGRHVVFGKV+ GMDVV+K+E      + +PK  V I++ G 
Sbjct: 113 FFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGV 165

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  158 bits (401), Expect = 2e-50
 Identities = 96/176 (54%), Positives = 117/176 (66%), Gaps = 16/176 (9%)

Query: 30  KVYFDIE-----VGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSS 84
           +V+FD+E          +GRIV  LF K VPKT +NFR LC    G         Y+ S+
Sbjct: 3   QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGE-------GYREST 55

Query: 85  FHRIIPSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQF 144
           FHRIIP+FMIQGGDFT G+G GG SI+G+ FADENF  KH   G+LSMANAGP+TNGSQF
Sbjct: 56  FHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQF 115

Query: 145 FITTVITSWLDGRHVVFGKVL--SGMDVVRKIEAEGRQSGE--PKSKVVISNSGEM 196
           FITT +TSWLDG+HVVFG+V       VV++IEA G  SG     ++  I N GE+
Sbjct: 116 FITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 171

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (361), Expect = 3e-44
 Identities = 66/151 (43%), Positives = 89/151 (58%), Gaps = 14/151 (9%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G + + L     PKT ENF  LC             YY G+ FHR I +F+IQGGD T G
Sbjct: 10  GDLNLELHCDLTPKTCENFIRLCKKH----------YYDGTIFHRSIRNFVIQGGDPT-G 58

Query: 103 DGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVF 161
            G GGES +G+ F DE    L HTG G+LSMAN+GP++N SQFFIT    ++LD +H +F
Sbjct: 59  TGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIF 118

Query: 162 GKVLSGMDVVRKIEAE--GRQSGEPKSKVVI 190
           G+V+ G DV+  +E      ++  PK ++ I
Sbjct: 119 GRVVGGFDVLTAMENVESDPKTDRPKEEIRI 149

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (350), Expect = 1e-42
 Identities = 76/163 (46%), Positives = 95/163 (58%), Gaps = 18/163 (11%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
            VY +       +G IV+ L+ K  PKT +NF  L              YY G+ FHRII
Sbjct: 13  NVYLETS-----MGIIVLELYWKHAPKTCKNFAELARRG----------YYNGTKFHRII 57

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITT 148
             FMIQGGD T G GRGG SI+G+ F DE +  LK TG G+L+MANAGPDTNGSQFF+T 
Sbjct: 58  KDFMIQGGDPT-GTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTL 116

Query: 149 VITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQS-GEPKSKVVI 190
             T WLDG+H +FG+V  G+ +V ++      S   P   V I
Sbjct: 117 APTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  128 bits (322), Expect = 2e-38
 Identities = 65/156 (41%), Positives = 81/156 (51%), Gaps = 11/156 (7%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSG-----KPLYYKGSSFHRIIPSFMIQGG 97
           G I + LFG   PKTV NF  L  G K              +Y G+ FHR+I  FMIQGG
Sbjct: 13  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 72

Query: 98  DFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGR 157
           D T G GRGG     +   + + +L+   P +L+MANAGP TNGSQFFIT   T  L+ R
Sbjct: 73  DPT-GTGRGGP--GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRR 129

Query: 158 HVVFGKVLS--GMDVVRKIEAEGRQSGE-PKSKVVI 190
           H +FG+V+      VV  I        + P   VVI
Sbjct: 130 HTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVI 165

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 5e-37
 Identities = 58/152 (38%), Positives = 79/152 (51%), Gaps = 12/152 (7%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G I + +F +  PKT ENF ALC             YY G  FHR I  FM+Q GD T  
Sbjct: 10  GDIKIEVFCERTPKTCENFLALC----------ASNYYNGCIFHRNIKGFMVQTGDPTGT 59

Query: 103 DGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFG 162
              G      +   + +  LKH   GV+SMAN GP+TNGSQFFIT      LD ++ VFG
Sbjct: 60  GRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFG 119

Query: 163 KVLSGMDVVRKIEA--EGRQSGEPKSKVVISN 192
           KV+ G++ + ++E      ++  P + V I +
Sbjct: 120 KVIDGLETLDELEKLPVNEKTYRPLNDVHIKD 151

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score =  113 bits (283), Expect = 1e-32
 Identities = 67/177 (37%), Positives = 97/177 (54%), Gaps = 16/177 (9%)

Query: 20  SREELEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLY 79
           +  +++  T + Y  I      +G   + L+    PKT  NF  LC             +
Sbjct: 6   AYYKMKGHTERGYITIYT---NLGDFEVELYWYHSPKTCLNFYTLCEMG----------F 52

Query: 80  YKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPD 138
           Y  + FHR+IP+F+IQGGD T G G+GG+SI+GE F DE N +LKHTG G+LSM+N GP+
Sbjct: 53  YDNTIFHRVIPNFVIQGGDPT-GTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPN 111

Query: 139 TNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEA-EGRQSGEPKSKVVISNSG 194
           TN SQFFIT      LDG+H +F +V   M  +  I + +   + +P   + I  + 
Sbjct: 112 TNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS 168

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 3e-32
 Identities = 69/165 (41%), Positives = 85/165 (51%), Gaps = 12/165 (7%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
           K   D  +    +G I   LF    PKTVENF              +  YY G +FHRII
Sbjct: 6   KRVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS----------RNGYYNGHTFHRII 55

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
             FMIQ GD T     G     GE   + +  L+H  P  LSMANAG +TNGSQFFIT V
Sbjct: 56  KGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVV 115

Query: 150 ITSWLDGRHVVFGKVLSGMDVVRKIEA--EGRQSGEPKSKVVISN 192
            T WLD +H VFG+V  GM+VV++I       ++ +P   V I N
Sbjct: 116 PTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 160

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score =  106 bits (264), Expect = 6e-30
 Identities = 70/153 (45%), Positives = 86/153 (56%), Gaps = 13/153 (8%)

Query: 42  IGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTL 101
           +G I + LF K   KTV+NF                 YY    FHR+I  FM+Q GD + 
Sbjct: 10  MGDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPS- 58

Query: 102 GDGRGGESIFGESFADENF-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVV 160
           GDG GGESI+G  F DE F  L H+ P ++SMAN GP+TNGSQFFITTV   WLD +H V
Sbjct: 59  GDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTV 118

Query: 161 FGKVLSGMDVVRKIEA-EGRQSGEPKSKVVISN 192
           FGKV  G  +V  IE     +  +P   + I N
Sbjct: 119 FGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILN 151

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (253), Expect = 3e-28
 Identities = 50/162 (30%), Positives = 68/162 (41%), Gaps = 27/162 (16%)

Query: 43  GRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLG 102
           G IV+  F    P+TV+NF   C          +  +Y  + FHR+I  FMIQGG F  G
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58

Query: 103 DGRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTV--------ITSW 153
             +       E   +E N  LK+T   +       P +  +QFFI  V          S 
Sbjct: 59  MKQK---ATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESL 115

Query: 154 LDGRHVVFGKVLSGMDVVRKIEA-----EGRQSGEPKSKVVI 190
               + VF +V+ GMD V KI+       G     PK  V+I
Sbjct: 116 QGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVII 157

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 91.5 bits (226), Expect = 4e-24
 Identities = 51/177 (28%), Positives = 74/177 (41%), Gaps = 27/177 (15%)

Query: 30  KVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRII 89
            V      G      I + L  +  P +V+NF                 +Y  ++FHR+I
Sbjct: 6   HVLLTTSAG-----NIELELDKQKAPVSVQNFVDYVNSG----------FYNNTTFHRVI 50

Query: 90  PSFMIQGGDFTLGDGRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTV 149
           P FMIQGG FT    +   +   ++ AD    L++T   +     A  D+  SQFFI   
Sbjct: 51  PGFMIQGGGFTEQMQQKKPNPPIKNEADNG--LRNTRGTIAMARTADKDSATSQFFINVA 108

Query: 150 ITSWLD-----GRHVVFGKVLSGMDVVRKIEA-----EGRQSGEPKSKVVISNSGEM 196
             ++LD       + VFGKV+ GMDV  KI        G     P   VVI ++  +
Sbjct: 109 DNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVL 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=1.2e-51  Score=321.17  Aligned_cols=171  Identities=68%  Similarity=1.191  Sum_probs=163.4

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG  106 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~  106 (198)
                      .+++||||++++++++|+|+||||.+.||++|+||++||++..+...++|.+||+++.||||+|++++|+|++..+++.+
T Consensus         2 ~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~~~   81 (172)
T d2igva1           2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTG   81 (172)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCCCCCC
Confidence            47899999999999999999999999999999999999999888778888999999999999999999999998888888


Q ss_pred             CccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCccc
Q 029122          107 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS  186 (198)
Q Consensus       107 ~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~  186 (198)
                      +...++..+++|.....|+.+|+|+|+++++++++|||||+++++|+||++|+|||||++|||||++|+..++++++|++
T Consensus        82 ~~~~~~~~~~~e~~~~~~~~~G~lsma~~~~~~~~sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~  161 (172)
T d2igva1          82 GESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVK  161 (172)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSS
T ss_pred             CcccCCCccCccccccccCCCcEEEEeecCCCCcCceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCCCCCCCC
Confidence            88888999999988888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeeeeeec
Q 029122          187 KVVISNSGEMA  197 (198)
Q Consensus       187 ~i~I~~cg~l~  197 (198)
                      +|+|++||+|+
T Consensus       162 ~i~I~~cG~l~  172 (172)
T d2igva1         162 DCMIADCGQLK  172 (172)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CeEEEeccccC
Confidence            99999999995

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1e-49  Score=309.69  Aligned_cols=169  Identities=62%  Similarity=1.028  Sum_probs=157.6

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG  106 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~  106 (198)
                      .+++|||||++++|++|+|+||||++.||++|+||++||++.+.. ..++.+||+++.|||+++++++|+|+...+++.+
T Consensus         2 ~r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~-~~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~~~   80 (170)
T d1qnga_           2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIG-SRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSG   80 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEEC-TTSSEECCTTCBCCEEETTTEEEECCTTTSSSSC
T ss_pred             CCCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhcccccc-ccCccCccCcccceEEEeCceEEecCccCCCCCC
Confidence            478999999999999999999999999999999999999876432 2356779999999999999999999998888888


Q ss_pred             CccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCccc
Q 029122          107 GESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKS  186 (198)
Q Consensus       107 ~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~  186 (198)
                      +...++..++++...+.|+.+|+|+|++.++++++|||||+++++|+||++|+|||||++|||||++|+..++++++|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~  160 (170)
T d1qnga_          81 GESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKR  160 (170)
T ss_dssp             CCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSS
T ss_pred             CcccCCCccccccccccCCCCeEEEEeecCCCCccccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCCCcCCcc
Confidence            88888888999988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeeeeee
Q 029122          187 KVVISNSGEM  196 (198)
Q Consensus       187 ~i~I~~cg~l  196 (198)
                      +|+|++||+|
T Consensus       161 ~i~I~~CG~l  170 (170)
T d1qnga_         161 SVVITDCGEL  170 (170)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEeeEcC
Confidence            9999999997

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-49  Score=302.18  Aligned_cols=161  Identities=64%  Similarity=1.105  Sum_probs=150.8

Q ss_pred             CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCC
Q 029122           28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG  107 (198)
Q Consensus        28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~  107 (198)
                      +++|||||.++++++|+|+||||.+.||++|+||++||++.++       .+|+++.||||+|++++|+|++....+.++
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~-------~~Y~g~~f~Rv~~~~~iq~G~~~~~~~~~~   73 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKG-------FGFKGSSFHRIIPQFMCQGGDFTNHNGTGG   73 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTS-------CCSTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhccc-------cccCCcEEEEEEEeeeEEeeeccCCCCCCC
Confidence            4789999999999999999999999999999999999976532       379999999999999999999987777777


Q ss_pred             ccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCcccc
Q 029122          108 ESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSK  187 (198)
Q Consensus       108 ~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~~  187 (198)
                      ...++....++....+|+++|+++|++.++++++|||||+++++|+||++|+|||||++|||||++|+..++++++|+++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~G~ls~~~~~~~s~~sqFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~~~~~P~~~  153 (161)
T d2r99a1          74 KSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQK  153 (161)
T ss_dssp             CBTTBSCBCCCCCCSCCCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSC
T ss_pred             ccccCccccccccccccccceeeeecccCCCCcCcceEeccCCccccCCcceEEEEEeehHHHHHHHHccCCCCCcCCCC
Confidence            77888888888888999999999999999999999999999999999999999999999999999999989999999999


Q ss_pred             eEEeeeee
Q 029122          188 VVISNSGE  195 (198)
Q Consensus       188 i~I~~cg~  195 (198)
                      |+|++||+
T Consensus       154 i~I~~CGe  161 (161)
T d2r99a1         154 VIIADCGE  161 (161)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeCCC
Confidence            99999996

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-49  Score=302.98  Aligned_cols=163  Identities=63%  Similarity=1.109  Sum_probs=153.0

Q ss_pred             CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCC
Q 029122           28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG  107 (198)
Q Consensus        28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~  107 (198)
                      +++|||||+++++++|+|+||||++.||++|+||++||++++       ..+|+++.|||+++++++|+|++...++.++
T Consensus         2 n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~-------~~~Y~g~~f~rv~~~~~iq~g~~~~~~~~~~   74 (164)
T d2z6wa1           2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK-------GFGYKGSTFHRVIPSFMCQAGDFTNHNGTGG   74 (164)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-------SCCSTTCBEEEEETTTEEEECCTTTSSSSCC
T ss_pred             CCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCC-------CcccCCcEEEEecccceEecCCccCCCCCCC
Confidence            579999999999999999999999999999999999997664       3379999999999999999999987777788


Q ss_pred             ccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCcccc
Q 029122          108 ESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSK  187 (198)
Q Consensus       108 ~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~~  187 (198)
                      ...++..++++.....|+.+|+|+|++.++++++|||||++.+.|+||++|+|||||++|||||++|+..++++++|+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~~~~P~~~  154 (164)
T d2z6wa1          75 KSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKK  154 (164)
T ss_dssp             CBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSC
T ss_pred             ccccCCcCCccccccccCCccEEEEecCCCCCCCcceeccccCCCcccccceEEEEecccHHHHHHHHhCCCCCCCCCCC
Confidence            88888888888888888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeeeeec
Q 029122          188 VVISNSGEMA  197 (198)
Q Consensus       188 i~I~~cg~l~  197 (198)
                      |+|.+||+|.
T Consensus       155 i~I~~cG~l~  164 (164)
T d2z6wa1         155 IVITDCGQLS  164 (164)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEeCeecC
Confidence            9999999984

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=8.1e-49  Score=302.44  Aligned_cols=160  Identities=66%  Similarity=1.167  Sum_probs=151.4

Q ss_pred             cEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCc
Q 029122           29 HKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGE  108 (198)
Q Consensus        29 ~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~  108 (198)
                      .+||||++++++++|+|+||||++.||++|+||++||+++.|+       ||+++.|||++|++++|+|++..+++.++.
T Consensus         2 ~~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~-------~Y~g~~f~rv~~~~~iq~G~~~~~~~~~~~   74 (162)
T d2cfea1           2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGF-------GYAGSHFHRVIPDFMLQGGDFTAGNGTGGK   74 (162)
T ss_dssp             CCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC-------CSTTCBCCEEETTTEEEECCTTTSSSSCCC
T ss_pred             CeEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCC-------ccCCCEEEEEEecceEecCCCCCCCCCCCc
Confidence            3699999999999999999999999999999999999887553       599999999999999999999888888888


Q ss_pred             cccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCCcccce
Q 029122          109 SIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGEPKSKV  188 (198)
Q Consensus       109 ~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~P~~~i  188 (198)
                      ..+...+.+|...++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||||++|+..++++++|+++|
T Consensus        75 ~~~~~~~~~e~~~~~h~~~G~vsm~~~~~~s~~sqF~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~P~~~i  154 (162)
T d2cfea1          75 SIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRI  154 (162)
T ss_dssp             BTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCE
T ss_pred             ccCCCccccccCCCCCCCceEEEEeecCCCCCCcceEEeecCCccccccceEEEEEEehHHHHHHHhcCCCCCCCCCCCe
Confidence            88888899998899999999999999999999999999999999999999999999999999999999899999999999


Q ss_pred             EEeeeee
Q 029122          189 VISNSGE  195 (198)
Q Consensus       189 ~I~~cg~  195 (198)
                      +|.+|||
T Consensus       155 ~I~~cgv  161 (162)
T d2cfea1         155 EIAKCGV  161 (162)
T ss_dssp             EEEEEEE
T ss_pred             EEEeeEc
Confidence            9999997

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-48  Score=309.49  Aligned_cols=173  Identities=58%  Similarity=1.016  Sum_probs=160.4

Q ss_pred             cccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCC-CCCCcccccCCEEEEeecCceEEecCCcCCC
Q 029122           25 EKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIG-KSGKPLYYKGSSFHRIIPSFMIQGGDFTLGD  103 (198)
Q Consensus        25 ~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~-~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~  103 (198)
                      -+.+++||||++++++++|+|+||||.+.||++|+||++||+++.+.. ..++..||+|+.|||+++++++|+|+.....
T Consensus        11 ~~~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~~~~   90 (195)
T d1ihga2          11 NPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQN   90 (195)
T ss_dssp             CTTSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCccCCC
Confidence            335899999999999999999999999999999999999999876543 4567789999999999999999999988777


Q ss_pred             CCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCCCCCC
Q 029122          104 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGRQSGE  183 (198)
Q Consensus       104 ~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~  183 (198)
                      +.++...++..++++.....|+.+|+|+|++.++++++|||||+|+++++||++|+|||||++|||||++|++.++++++
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~~~  170 (195)
T d1ihga2          91 GTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEK  170 (195)
T ss_dssp             SSCCCBTTBSCBCCCCCCBCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTE
T ss_pred             CCCCccCCCCcccccccCcccCcceEEeeeecCCCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCCCCC
Confidence            77777788888899998999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceEEeeeeeec
Q 029122          184 PKSKVVISNSGEMA  197 (198)
Q Consensus       184 P~~~i~I~~cg~l~  197 (198)
                      |+++|+|++||+|+
T Consensus       171 P~~~i~I~~cG~l~  184 (195)
T d1ihga2         171 PAKLCVIAECGELK  184 (195)
T ss_dssp             ESSCEEEEEEEEEC
T ss_pred             cCCCeEEEECcccC
Confidence            99999999999986

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=2.6e-48  Score=300.62  Aligned_cols=165  Identities=60%  Similarity=1.035  Sum_probs=149.3

Q ss_pred             ccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCC
Q 029122           24 LEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGD  103 (198)
Q Consensus        24 ~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~  103 (198)
                      +|+++++|||||+++++++|+|+||||.+.||++|+||++||+++.+.       +|+++.|||++|++++|+|+....+
T Consensus         1 ~p~~t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~-------~Y~g~~f~rv~~~~~iq~G~~~~~~   73 (166)
T d1xo7a_           1 MPVVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGF-------GYKGSIFHRVIRNFMIQGGDFTNFD   73 (166)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC-------CSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCCCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhcccccc-------cccCcEEEEEcCCCEEEeCCCCCCC
Confidence            589999999999999999999999999999999999999999877432       3999999999999999999998777


Q ss_pred             CCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCC
Q 029122          104 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSG  182 (198)
Q Consensus       104 ~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~  182 (198)
                      +.++...++..++++.... |+.+|+|+|++.++++++|||||+++++|+||++|+|||||++|||+|++|+..+ +.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~-~~~~G~l~~a~~g~~s~~sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~  152 (166)
T d1xo7a_          74 GTGGKSIYGTRFDDENLKI-KHFVGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLND  152 (166)
T ss_dssp             SSCCCBTTBSCBCCCCCCS-CCCTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGG
T ss_pred             CCCCCCCCCcccccccccc-cccccceeecccCCCCCCCeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCC
Confidence            7777776666666666544 4479999999999999999999999999999999999999999999999999765 5778


Q ss_pred             CcccceEEeeeeee
Q 029122          183 EPKSKVVISNSGEM  196 (198)
Q Consensus       183 ~P~~~i~I~~cg~l  196 (198)
                      +|+++|+|.+||+|
T Consensus       153 ~P~~~i~I~~cgvl  166 (166)
T d1xo7a_         153 KPKKAVKINDCGVL  166 (166)
T ss_dssp             CBSSCEEEEEEEEC
T ss_pred             CCCCCEEEEeeEeC
Confidence            99999999999997

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=1.3e-48  Score=306.53  Aligned_cols=167  Identities=69%  Similarity=1.097  Sum_probs=155.7

Q ss_pred             ccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCC
Q 029122           24 LEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGD  103 (198)
Q Consensus        24 ~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~  103 (198)
                      -|+++++|||||+++++++|+|+||||.+.||++|+||++||++++       ..+|+++.|||++|++++|+|+...++
T Consensus         2 ~p~~t~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g~-------~~~y~g~~f~rv~~~~~iq~G~~~~~~   74 (182)
T d1h0pa_           2 GPKVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPK-------GEGYPGSKFHRVIADFMIQGGDFTRGD   74 (182)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCT-------TTSSTTCBCCEEETTTEEEECCTTTSS
T ss_pred             cCCCCCeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhcc-------cCCcCCceEEEEEecceEEcCCCCCCC
Confidence            3789999999999999999999999999999999999999997653       238999999999999999999998888


Q ss_pred             CCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCC
Q 029122          104 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSG  182 (198)
Q Consensus       104 ~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~  182 (198)
                      +.++...++..+.++.....|+.+|+++|++.++++++|||||+++++|+||++|+|||||++|||+|++|+..+ ++++
T Consensus        75 ~~g~~~~~~~~~~~~~~~~~~~~~G~~~~a~~g~~s~~sqFfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~  154 (182)
T d1h0pa_          75 GTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGD  154 (182)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTT
T ss_pred             CCCCCCCCCCccCcccccccccCCceeeecccCCCCcCccccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCC
Confidence            888888888888988888899999999999999999999999999999999999999999999999999999765 5667


Q ss_pred             CcccceEEeeeeeec
Q 029122          183 EPKSKVVISNSGEMA  197 (198)
Q Consensus       183 ~P~~~i~I~~cg~l~  197 (198)
                      +|+++|+|++||+|+
T Consensus       155 ~P~~~v~I~~cG~l~  169 (182)
T d1h0pa_         155 RPKQDVIIAASGHIA  169 (182)
T ss_dssp             EESSCEEEEEEEEEE
T ss_pred             CCCCCEEEEECCeEe
Confidence            999999999999986

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=3.7e-48  Score=303.94  Aligned_cols=167  Identities=64%  Similarity=1.042  Sum_probs=156.0

Q ss_pred             ccccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCC
Q 029122           24 LEKVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGD  103 (198)
Q Consensus        24 ~~~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~  103 (198)
                      -|+++++|||||+++++++|+|+||||.+.||++|+||++||+++++       .+|+++.|||+++++++|+|++...+
T Consensus         3 ~p~~t~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k~-------~~Y~g~~f~rv~~~~~iq~G~~~~~~   75 (182)
T d2rmca_           3 GPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKG-------YGYKGSIFHRVIKDFMIQGGDFTARD   75 (182)
T ss_dssp             SCEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTS-------CSSTTCBEEEEETTTEEEECCCSSSS
T ss_pred             CCccCCeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCCC-------ccccCceeeeeecCceEEcCCCCCCC
Confidence            58899999999999999999999999999999999999999987642       37999999999999999999998777


Q ss_pred             CCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCC
Q 029122          104 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSG  182 (198)
Q Consensus       104 ~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~  182 (198)
                      +.++...++..++++.....|+.+|+|+|++.++++++|||||++++.++||++|+|||||++|||||++|+..+ +.++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~  155 (182)
T d2rmca_          76 GTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHD  155 (182)
T ss_dssp             SSCCCBTTBSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTS
T ss_pred             CCCCCCCcCCcccccccccccCCCccEehhhcCCCccCccccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCC
Confidence            788888888889888888899999999999999999999999999999999999999999999999999999765 5789


Q ss_pred             CcccceEEeeeeeec
Q 029122          183 EPKSKVVISNSGEMA  197 (198)
Q Consensus       183 ~P~~~i~I~~cg~l~  197 (198)
                      +|+++|+|.+||+|+
T Consensus       156 ~P~~~v~I~~~g~l~  170 (182)
T d2rmca_         156 RPLTDCTIVNSGKID  170 (182)
T ss_dssp             CBSSCEEEEEEEEEE
T ss_pred             cCCCCeEEEEeeEEe
Confidence            999999999999996

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=7.3e-48  Score=300.10  Aligned_cols=170  Identities=56%  Similarity=0.931  Sum_probs=156.2

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCC-CCCCcccccCCEEEEeecCceEEecCCcCCCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIG-KSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGR  105 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~-~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~  105 (198)
                      -+++||||++++++++|+|+||||+|.||++|+||++||+++.+.+ ..+|.+||+++.||||++++++|+|+...+++.
T Consensus         2 ~~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~~   81 (174)
T d1a33a_           2 DRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGT   81 (174)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSSS
T ss_pred             CCCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCCC
Confidence            4789999999999999999999999999999999999999876654 346778999999999999999999999877777


Q ss_pred             CCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCc
Q 029122          106 GGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEP  184 (198)
Q Consensus       106 ~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P  184 (198)
                      ++.+.++....++....+|+++|+++|++.++++++|||||++++.|+||++|+|||||++|||||++|++.+ +.+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~s~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P  161 (174)
T d1a33a_          82 GGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRP  161 (174)
T ss_dssp             CCCCTTSSCBCCCCSCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCB
T ss_pred             CCCCccCccccccccccccCcceeeeeeccCCCCCCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCC
Confidence            7777777777778888999999999999999999999999999999999999999999999999999999765 578899


Q ss_pred             ccceEEeeeeee
Q 029122          185 KSKVVISNSGEM  196 (198)
Q Consensus       185 ~~~i~I~~cg~l  196 (198)
                      +++|+|.+||+|
T Consensus       162 ~~~i~I~~cGel  173 (174)
T d1a33a_         162 LADVVILNCGEL  173 (174)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEeeEEE
Confidence            999999999997

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=4.8e-47  Score=295.19  Aligned_cols=169  Identities=58%  Similarity=1.017  Sum_probs=149.7

Q ss_pred             ccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCC
Q 029122           26 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGR  105 (198)
Q Consensus        26 ~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~  105 (198)
                      +.+++||||++++++++|+|+||||++.||++|+||++||+.+.  ...++...|+++.|||+++++++|+|+...+.+.
T Consensus         4 ~~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~--~~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~~   81 (173)
T d1qoia_           4 PVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEF--RKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGT   81 (173)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCC--EETTEECSSTTCBCCEEETTTEEEECCTTTSSSC
T ss_pred             CCCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhcccc--cccCCCCCcCCcccceeccceeeccCCcccCCcc
Confidence            36889999999999999999999999999999999999997542  1112222399999999999999999998876666


Q ss_pred             CCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC-CCCCc
Q 029122          106 GGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR-QSGEP  184 (198)
Q Consensus       106 ~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~-~~~~P  184 (198)
                      .....+...+.++.....|+.+|+|+|+++++++++|||||++++.|+||++|+|||||++|||+|++|++.++ ++++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~G~l~ma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P  161 (173)
T d1qoia_          82 GVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKP  161 (173)
T ss_dssp             CCCCTTSSCBCCCCCCSCCCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCB
T ss_pred             eeecccCCcccccccccccCCCcEEEeeecCCCCCCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcC
Confidence            66666677788887788888999999999999999999999999999999999999999999999999997664 67999


Q ss_pred             ccceEEeeeeee
Q 029122          185 KSKVVISNSGEM  196 (198)
Q Consensus       185 ~~~i~I~~cg~l  196 (198)
                      +++|+|++||+|
T Consensus       162 ~~~i~I~~cGel  173 (173)
T d1qoia_         162 KLPVVISQCGEM  173 (173)
T ss_dssp             SSCEEEEEEEEC
T ss_pred             CCCEEEEcccCC
Confidence            999999999987

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=3.5e-46  Score=293.55  Aligned_cols=167  Identities=47%  Similarity=0.842  Sum_probs=153.0

Q ss_pred             CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCC
Q 029122           28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG  107 (198)
Q Consensus        28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~  107 (198)
                      +++||||++++++++|+|+||||.|.||++|+||++||+++.+  ..++...|+|+.|||+++++++|+|+.....+...
T Consensus        16 np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~--~~~~~~~Y~g~~f~rv~~~~~i~~G~~~~~~~~~~   93 (186)
T d1z81a1          16 NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYK--VNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGS   93 (186)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCB--SSSSBCSSTTEECCEEETTTEEEECCTTTSSSCCC
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccc--cCCcccccCCCeeeeeecceeeecCCccccCCccc
Confidence            6889999999999999999999999999999999999987653  33445569999999999999999999887777777


Q ss_pred             ccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcC--HHHHHHHHhCCC--CCCC
Q 029122          108 ESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSG--MDVVRKIEAEGR--QSGE  183 (198)
Q Consensus       108 ~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G--~~vl~~I~~~~~--~~~~  183 (198)
                      ...++..++++....+|+++|+++|++.++++++|||||++++.|+||++|+|||||++|  ||+|++|+..++  .+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~g~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~~  173 (186)
T d1z81a1          94 LSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYK  173 (186)
T ss_dssp             CBTTBSCCCCCCCCSCCCSTTEEEECCSSSSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCC
T ss_pred             ccccCCcccccccccccCCCccchhhhcCCCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCCc
Confidence            778888899999999999999999999999999999999999999999999999999998  999999997654  4689


Q ss_pred             cccceEEeeeeee
Q 029122          184 PKSKVVISNSGEM  196 (198)
Q Consensus       184 P~~~i~I~~cg~l  196 (198)
                      |+++|+|++||+|
T Consensus       174 P~~~i~I~~CGel  186 (186)
T d1z81a1         174 PKIPINVVECGEL  186 (186)
T ss_dssp             BSSCEEEEEEEEC
T ss_pred             cCCCEEEEeCCcC
Confidence            9999999999997

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=8e-45  Score=282.25  Aligned_cols=161  Identities=60%  Similarity=1.031  Sum_probs=119.0

Q ss_pred             cEEEEEEE-----ECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCC
Q 029122           29 HKVYFDIE-----VGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGD  103 (198)
Q Consensus        29 ~~v~~di~-----v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~  103 (198)
                      ++|||||.     +++|++|+|+||||.+.||++|+||++||+++.+       ..|+++.|||++|++++|+|++..++
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~-------~~y~~~~f~ri~~~~~iq~G~~~~~~   74 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAG-------EGYRESTFHRIIPNFMIQGGDFTRGN   74 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTT-------TSSTTCBCCEEETTTEEEECC-----
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhccc-------ccccCceeeEEEEEEeeEcCCccCCC
Confidence            57999998     5689999999999999999999999999986532       14999999999999999999998777


Q ss_pred             CCCCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEE--cCHHHHHHHHhCCCCC
Q 029122          104 GRGGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL--SGMDVVRKIEAEGRQS  181 (198)
Q Consensus       104 ~~~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi--~G~~vl~~I~~~~~~~  181 (198)
                      +.++...++..+.++...+.|+++|+|+|+++++++++|||||++++.|+||++|+|||||+  +|||||++|++.++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~~~s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~  154 (171)
T d2c3ba1          75 GTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSS  154 (171)
T ss_dssp             -----------------CHHHHHTCEEEEC---------CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTT
T ss_pred             CCCCCcCCCCccccccccccCCCCceEEeeecCCCCCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCC
Confidence            77777777888888888889999999999999999999999999999999999999999999  4999999999877665


Q ss_pred             C--CcccceEEeeeeee
Q 029122          182 G--EPKSKVVISNSGEM  196 (198)
Q Consensus       182 ~--~P~~~i~I~~cg~l  196 (198)
                      +  +|..+|+|.+||+|
T Consensus       155 g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         155 GSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             SCCCSSSCCEEEEEEEC
T ss_pred             CCcCCCCCEEEEeCccC
Confidence            4  68999999999997

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-42  Score=267.02  Aligned_cols=147  Identities=46%  Similarity=0.713  Sum_probs=131.1

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |++|+|+||||++.||++|+||++||+++          ||+++.|||++++++||+||+... ..++...++..++.|.
T Consensus         7 T~~G~i~ieL~~~~aP~tv~nF~~L~~~g----------~Y~~~~f~rv~~~~~iq~Gd~~~~-~~~~~~~~~~~~~~e~   75 (159)
T d2ok3a1           7 TDVGDIKIEVFCERTPKTCENFLALCASN----------YYNGCIFHRNIKGFMVQTGDPTGT-GRGGNSIWGKKFEDEY   75 (159)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTCBCCEEETTTEEEECCTTSS-SSCCCCTTSSCBCCCC
T ss_pred             eCCeEEEEEEcCCCChHHHHHHHHHHhhh----------cccceeEecccCCeEEEeCCcccc-CCCCcccCCCcccccc
Confidence            88999999999999999999999999765          899999999999999999998643 3444555666677664


Q ss_pred             -cCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC--CCCCcccceEEeeeeee
Q 029122          120 -FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR--QSGEPKSKVVISNSGEM  196 (198)
Q Consensus       120 -~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~--~~~~P~~~i~I~~cg~l  196 (198)
                       ..++|+++|+|+|++.++++++|||||++++.|+||++|+|||||++|||+|++|++.++  ++++|+++|+|++|++|
T Consensus        76 ~~~~~~~~~G~lsma~~~~~s~~sqFfIt~~~~p~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i~  155 (159)
T d2ok3a1          76 SEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIH  155 (159)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEE
T ss_pred             ccCCCCCCCeEEEEeeCCCCCcCcceEeeeccCcccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEEE
Confidence             467899999999999999999999999999999999999999999999999999997654  45789999999999998


Q ss_pred             c
Q 029122          197 A  197 (198)
Q Consensus       197 ~  197 (198)
                      +
T Consensus       156 ~  156 (159)
T d2ok3a1         156 A  156 (159)
T ss_dssp             C
T ss_pred             e
Confidence            5

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-42  Score=268.16  Aligned_cols=147  Identities=45%  Similarity=0.787  Sum_probs=134.3

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |++|+|+||||.+.||++|+||++||+++          ||+|+.|||++|++++|+|++. ..+.++...++..+++|.
T Consensus         7 T~~G~i~IeL~~~~aP~tv~nF~~L~~~~----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~E~   75 (178)
T d1zkca1           7 TNKGDLNLELHCDLTPKTCENFIRLCKKH----------YYDGTIFHRSIRNFVIQGGDPT-GTGTGGESYWGKPFKDEF   75 (178)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT----------TTTTEEEEEEETTTEEEECCTT-SSSSCCCBTTBSCBCCCC
T ss_pred             eCCEEEEEEEcCCCChHHHHHHHHHHhcC----------CcCceEeeeccceeEEecCCcc-CCCCCCcccCCCCcCCcc
Confidence            78999999999999999999999999755          8999999999999999999986 456667777788888875


Q ss_pred             c-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC--CCCCcccceEEeeeeee
Q 029122          120 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR--QSGEPKSKVVISNSGEM  196 (198)
Q Consensus       120 ~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~--~~~~P~~~i~I~~cg~l  196 (198)
                      . .++|.++|+|+|+++++++++|||||+++++++||++|+|||||++|||+|++|+..++  .+++|+++|+|.+|.+|
T Consensus        76 ~~~l~~~~~G~lsma~~~~~s~~sqF~It~~~~~~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~Il  155 (178)
T d1zkca1          76 RPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVF  155 (178)
T ss_dssp             CTTCCSCSTTEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEE
T ss_pred             ccccCCCCCeEEEEeecCCCCccceeeccccCCcccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEEE
Confidence            4 68888999999999999999999999999999999999999999999999999997654  56899999999999998


Q ss_pred             c
Q 029122          197 A  197 (198)
Q Consensus       197 ~  197 (198)
                      +
T Consensus       156 ~  156 (178)
T d1zkca1         156 V  156 (178)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-42  Score=266.60  Aligned_cols=151  Identities=50%  Similarity=0.875  Sum_probs=136.5

Q ss_pred             CcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCC
Q 029122           28 THKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGG  107 (198)
Q Consensus        28 ~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~  107 (198)
                      .++|+|+     |++|+|+||||++.||++|+||++||+.+          ||+++.|||+++++++|+||+. +.+.++
T Consensus        11 ~p~v~~~-----T~~G~i~ieL~~~~aP~tv~nF~~L~~~g----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~   74 (166)
T d1xwna1          11 PPNVYLE-----TSMGIIVLELYWKHAPKTCKNFAELARRG----------YYNGTKFHRIIKDFMIQGGDPT-GTGRGG   74 (166)
T ss_dssp             CCEEEEE-----ESSCEEEEEECTTTCHHHHHHHHHHHHHT----------SSTTCCEEEEETTTEEEECCST-TTTSSC
T ss_pred             CCEEEEE-----ECceeEEEEEcCCCChHHHHHHHHHHhcC----------CcCceeeeEEcccEEEEeCCCC-CCCCCC
Confidence            4689998     88999999999999999999999999644          8999999999999999999986 556666


Q ss_pred             ccccCCcccCcc-cCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCcc
Q 029122          108 ESIFGESFADEN-FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPK  185 (198)
Q Consensus       108 ~~~~~~~~~~e~-~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P~  185 (198)
                      ...++..+++|. ..+.|+++|+|+|+++++++++|||||++++.++||++|+|||||++|||||++|+..+ +.+++|.
T Consensus        75 ~~~~~~~~~~e~~~~~~~~~~G~lsm~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~  154 (166)
T d1xwna1          75 ASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPV  154 (166)
T ss_dssp             CCSSCSCCCCCCCTTCCSCSSSEEEEEEEETTEEEEEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCBS
T ss_pred             ccCCCCccccccCCCCCCCCCeEEEecccCCCCCCcceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCCC
Confidence            677777787774 46888899999999999999999999999999999999999999999999999999765 6789999


Q ss_pred             cceEEeeee
Q 029122          186 SKVVISNSG  194 (198)
Q Consensus       186 ~~i~I~~cg  194 (198)
                      ++|+|.++-
T Consensus       155 ~~I~I~~a~  163 (166)
T d1xwna1         155 DDVKIIKAY  163 (166)
T ss_dssp             SCCCEEEEE
T ss_pred             CCeEEEEee
Confidence            999999874

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=6.8e-42  Score=261.58  Aligned_cols=145  Identities=48%  Similarity=0.781  Sum_probs=132.3

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |++|+|+||||++.||++|+||++||+++          ||+|+.|||+++++++|+||+. +.+.++.+.++..++++.
T Consensus         8 T~~G~i~ieL~~~~aP~tv~nF~~l~~~g----------~Y~g~~f~rv~~~~~iq~Gd~~-~~~~~~~~~~~~~~~~~~   76 (155)
T d2fu0a1           8 TTMGDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPS-GDGTGGESIWGNEFEDEF   76 (155)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTCBCCEEETTTEEEECCTT-SSSSCCCCTTSSCBCCCC
T ss_pred             EcccEEEEEEcCCCChHHHHHHhhHhhCC----------ccccceeeeeeecceeeccCCC-CCCcCCcccCCCcccccc
Confidence            89999999999999999999999999755          8999999999999999999986 555666777888888776


Q ss_pred             c-CcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCcccceEEeeeee
Q 029122          120 F-KLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISNSGE  195 (198)
Q Consensus       120 ~-~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P~~~i~I~~cg~  195 (198)
                      . .+.|.++|+++|++.++++++|||||++++.|+||++|+|||||++|||+|++|++.+ +++++|+++|+|.+|.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~s~~sqFfI~~~~~~~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v~i  154 (155)
T d2fu0a1          77 FDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI  154 (155)
T ss_dssp             BTTBCSSSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEE
T ss_pred             ccccccCCccEEEecccCCCCCCccceecccCccccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEEEE
Confidence            5 5788888899999999999999999999999999999999999999999999999766 57899999999999964

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=7.9e-41  Score=259.12  Aligned_cols=144  Identities=44%  Similarity=0.764  Sum_probs=128.4

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |++|+|+||||++.||++|+||++||+.+          ||+++.|||+++++++|+|++. +...++...+...++.|.
T Consensus        23 T~~G~i~IeL~~d~aP~tv~nF~~L~~~g----------~Y~~~~f~rv~~~~~iq~g~~~-~~~~~~~~~~~~~~~~e~   91 (169)
T d2b71a1          23 TNLGDFEVELYWYHSPKTCLNFYTLCEMG----------FYDNTIFHRVIPNFVIQGGDPT-GTGKGGKSIYGEYFEDEI   91 (169)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT----------TTTTEEEEEEETTTEEEEEETT-SSSSCCCBTTBSCBCCCC
T ss_pred             eCceeEEEEEeCCCCcHHHHHHHHHhhCC----------ccceeeeccccceeeEeccccc-cccCCCcccccccccccc
Confidence            67999999999999999999999999644          8999999999999999999986 444445555566666664


Q ss_pred             -cCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCC-CCCCCcccceEEeeee
Q 029122          120 -FKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEG-RQSGEPKSKVVISNSG  194 (198)
Q Consensus       120 -~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~-~~~~~P~~~i~I~~cg  194 (198)
                       ..++|.++|+|+|+++++++++|||||++++.|+||++|+|||||++|||||++|++.+ +++++|+++|+|.+|+
T Consensus        92 ~~~l~h~~~g~ls~~~~~p~s~~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  168 (169)
T d2b71a1          92 NKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS  168 (169)
T ss_dssp             CTTCCCCSTTEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred             ccccCCCCcEEEEhhhCCCCCCCCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEEcc
Confidence             46889999999999999999999999999999999999999999999999999999755 6789999999999986

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.1e-41  Score=258.29  Aligned_cols=153  Identities=33%  Similarity=0.490  Sum_probs=131.4

Q ss_pred             cCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCC
Q 029122           27 VTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRG  106 (198)
Q Consensus        27 ~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~  106 (198)
                      -+++|.|+     |+.|+|+||||++.||++|+||++||+++          ||+|+.|||+++++++|+|+.....+.+
T Consensus         3 g~~~V~l~-----T~~G~i~ieL~~~~aP~tv~nF~~L~~~~----------~Y~g~~fhRv~~~~~iq~G~~~~~~~~~   67 (166)
T d1v9ta_           3 GDPHVLLT-----TSAGNIELELDKQKAPVSVQNFVDYVNSG----------FYNNTTFHRVIPGFMIQGGGFTEQMQQK   67 (166)
T ss_dssp             CSCEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTCBEEEEETTTEEEESSBCTTCCBC
T ss_pred             CCCEEEEE-----ECCeeEEEEEeCCCChHHHHHHHHHhhCC----------ccccceeeEEEEEeecccCCcCCccccc
Confidence            35678888     88999999999999999999999999754          8999999999999999999987554433


Q ss_pred             CccccCCcccCcccCcccCCCeEEEeee-cCCCCCCceEEEEccCCcCCCCC-----ceEEEEEEcCHHHHHHHHhCCCC
Q 029122          107 GESIFGESFADENFKLKHTGPGVLSMAN-AGPDTNGSQFFITTVITSWLDGR-----HVVFGKVLSGMDVVRKIEAEGRQ  180 (198)
Q Consensus       107 ~~~~~~~~~~~e~~~~~~~~~G~ls~~~-~~~~~~~sqF~Itl~~~~~ld~~-----~~vfG~Vi~G~~vl~~I~~~~~~  180 (198)
                         .++..+++|.....|+.+|.|+|++ .++++++|||||++++.++||..     |+|||+|++|||+|++|+..+++
T Consensus        68 ---~~~~~~~~e~~~~~~~~rg~v~~~~~~~~~s~~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~  144 (166)
T d1v9ta_          68 ---KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTH  144 (166)
T ss_dssp             ---CCCCCBCCCGGGSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEE
T ss_pred             ---CCCCCccccccccccccCCEEEEEeeecCCCcccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCccc
Confidence               3466777786655556799999988 56899999999999999998864     89999999999999999976543


Q ss_pred             -----CCCcccceEEeeeeeec
Q 029122          181 -----SGEPKSKVVISNSGEMA  197 (198)
Q Consensus       181 -----~~~P~~~i~I~~cg~l~  197 (198)
                           +++|+++|+|.+|++|+
T Consensus       145 ~~~~~~~~P~~~v~I~~~~vlp  166 (166)
T d1v9ta_         145 DVGPYQNVPSKPVVILSATVLP  166 (166)
T ss_dssp             EETTEEEEESSCCBEEEEEECC
T ss_pred             CCCCCCCccCCCeEEEEEEEcC
Confidence                 35899999999999985

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-40  Score=254.60  Aligned_cols=155  Identities=44%  Similarity=0.634  Sum_probs=131.9

Q ss_pred             ccCcEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCC
Q 029122           26 KVTHKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGR  105 (198)
Q Consensus        26 ~~~~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~  105 (198)
                      +...++.++     |++|+|+||||.+.||++|+||++||+++          ||+|+.|||+++++++|+|++......
T Consensus         7 ~~~~~a~~~-----T~~G~i~ieL~~~~aP~tv~nF~~l~~~g----------~Y~g~~f~rv~~~~~iq~G~~~~~~~~   71 (164)
T d2a2na1           7 RVSDSAIIH-----TSMGDIHTKLFPVECPKTVENFCVHSRNG----------YYNGHTFHRIIKGFMIQTGDPTGTGMG   71 (164)
T ss_dssp             CCCSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTCBCCEEETTTEEEECCTTSSSSC
T ss_pred             cccCEEEEE-----eceeEEEEEEcCCCChHHHHHHHHHHhCC----------CcccceeeEEeeeeeEeecccccccCC
Confidence            345567776     89999999999999999999999999654          899999999999999999998754433


Q ss_pred             CCccccCCcccCcccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEEcCHHHHHHHHhCCC--CCCC
Q 029122          106 GGESIFGESFADENFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRKIEAEGR--QSGE  183 (198)
Q Consensus       106 ~~~~~~~~~~~~e~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~--~~~~  183 (198)
                      +.....+....++...++|+++|+++|++.++++++|||||++++.|+||++|+|||||++|||+|++|+..++  ++++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~  151 (164)
T d2a2na1          72 GESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDK  151 (164)
T ss_dssp             CCCTTSSCBCCCCCTTCCSCSSSEEEECCSSTTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCC
T ss_pred             CceeeecccccccccccccCccceeehhhcCCCCCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCC
Confidence            33333333333345578889999999999999999999999999999999999999999999999999997665  4589


Q ss_pred             cccceEEeeeee
Q 029122          184 PKSKVVISNSGE  195 (198)
Q Consensus       184 P~~~i~I~~cg~  195 (198)
                      |+++|+|.+|.+
T Consensus       152 P~~~V~I~~v~i  163 (164)
T d2a2na1         152 PYEDVSIINITV  163 (164)
T ss_dssp             BSSCCBEEEEEE
T ss_pred             cCCCcEEEEEEE
Confidence            999999999975

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.6e-39  Score=252.04  Aligned_cols=158  Identities=44%  Similarity=0.680  Sum_probs=132.3

Q ss_pred             cEEEEEEEECCEEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCC-----CCCcccccCCEEEEeecCceEEecCCcCCC
Q 029122           29 HKVYFDIEVGGKPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGK-----SGKPLYYKGSSFHRIIPSFMIQGGDFTLGD  103 (198)
Q Consensus        29 ~~v~~di~v~~t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~-----~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~  103 (198)
                      ..+.++     |+.|+|+||||++.||++|+||++||+++++.+.     ..+..||+++.|||+++++++|+|++.. .
T Consensus         4 ~~~ti~-----T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~-~   77 (171)
T d1w74a_           4 ATATLH-----TNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTG-T   77 (171)
T ss_dssp             EEEEEE-----ETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTS-S
T ss_pred             EEEEEE-----ECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccC-C
Confidence            345555     8999999999999999999999999998765432     2234589999999999999999999863 2


Q ss_pred             CCCCccccCCcccCc-ccCcccCCCeEEEeeecCCCCCCceEEEEccCCcCCCCCceEEEEEE--cCHHHHHHHHhCC-C
Q 029122          104 GRGGESIFGESFADE-NFKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVL--SGMDVVRKIEAEG-R  179 (198)
Q Consensus       104 ~~~~~~~~~~~~~~e-~~~~~~~~~G~ls~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~Vi--~G~~vl~~I~~~~-~  179 (198)
                      +.++.   ...+++| ...++|+++|+++|++.++++++|||||++++.|+||++|+|||||+  +|||||++|+..+ +
T Consensus        78 ~~~~~---~~~~~~e~~~~~~~~~~g~v~~~~~~~~s~~sqFfIt~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~  154 (171)
T d1w74a_          78 GRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATD  154 (171)
T ss_dssp             SSCCS---SCCBCCCCCTTCCSCSSSEEEECCSSTTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBC
T ss_pred             CCCCc---ccccccccCCCcCCCCCEEEEEEecCCCCCCcceEeeccCCCccccccEEEEEEeccccHHHHHHHHcCCcC
Confidence            22222   2233443 45688999999999999999999999999999999999999999999  4999999999766 6


Q ss_pred             CCCCcccceEEeeeee
Q 029122          180 QSGEPKSKVVISNSGE  195 (198)
Q Consensus       180 ~~~~P~~~i~I~~cg~  195 (198)
                      ++++|+++|+|.++.+
T Consensus       155 ~~~~P~~~i~I~~v~i  170 (171)
T d1w74a_         155 GNDRPTDPVVIESITI  170 (171)
T ss_dssp             TTSCBSSCCEEEEEEE
T ss_pred             CCCccCCCcEEEEEEE
Confidence            7799999999999875

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.4e-38  Score=243.92  Aligned_cols=145  Identities=34%  Similarity=0.519  Sum_probs=122.0

Q ss_pred             EEeeEEEEEEeCCCCchhHHHHHHhhcCCCCCCCCCCcccccCCEEEEeecCceEEecCCcCCCCCCCccccCCcccCcc
Q 029122           40 KPIGRIVMGLFGKAVPKTVENFRALCTGEKGIGKSGKPLYYKGSSFHRIIPSFMIQGGDFTLGDGRGGESIFGESFADEN  119 (198)
Q Consensus        40 t~~G~ivieL~~~~aP~~~~nF~~l~~g~~g~~~~~~~~~Y~g~~f~rv~~~~~iq~Gd~~~~~~~~~~~~~~~~~~~e~  119 (198)
                      |+.|+|+||||.+.||++|+||++||+.+          ||+|+.|||+++++++|+|++....+.+   .++.++++|.
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~l~~~g----------~Y~g~~fhrv~~~~~iq~G~~~~~~~~~---~~~~~~~~e~   72 (164)
T d1lopa_           6 TNHGDIVIKTFDDKAPETVKNFLDYCREG----------FYNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEA   72 (164)
T ss_dssp             ETTEEEEEEECTTTSHHHHHHHHHHHHTT----------TTTTEECCEEETTTEEEESSEETTTEEC---CCCCCBCCCC
T ss_pred             eCCeEEEEEEcCCCCHHHHHHHHHHHHcc----------CcCCceeeEEcCCceeeeeccccCCcCC---ccCCCccccc
Confidence            88999999999999999999999999644          8999999999999999999986443222   2356677775


Q ss_pred             cCcccCCCeEEEeeec-CCCCCCceEEEEccCC--------cCCCCCceEEEEEEcCHHHHHHHHhCCCC-----CCCcc
Q 029122          120 FKLKHTGPGVLSMANA-GPDTNGSQFFITTVIT--------SWLDGRHVVFGKVLSGMDVVRKIEAEGRQ-----SGEPK  185 (198)
Q Consensus       120 ~~~~~~~~G~ls~~~~-~~~~~~sqF~Itl~~~--------~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~-----~~~P~  185 (198)
                      ....++.+|.|+|+++ ++++++|||||++.+.        |++|++|+|||||++|||+|++|++.++.     +++|+
T Consensus        73 ~~~~~h~~g~l~~~~~~~~~~~~sqFfi~~~~~~~~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P~  152 (164)
T d1lopa_          73 NNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPK  152 (164)
T ss_dssp             CSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGGGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEES
T ss_pred             cccccceeeEEEEeccCCCCCccceeeeeccccccccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCcC
Confidence            5444456899999874 6899999999999864        78899999999999999999999977643     24899


Q ss_pred             cceEEeeeeeec
Q 029122          186 SKVVISNSGEMA  197 (198)
Q Consensus       186 ~~i~I~~cg~l~  197 (198)
                      ++|+|+++.+.+
T Consensus       153 ~~v~I~~v~I~e  164 (164)
T d1lopa_         153 EDVIIESVTVSE  164 (164)
T ss_dssp             SCCEEEEEEECC
T ss_pred             CCeEEEEEEEeC
Confidence            999999998764