Citrus Sinensis ID: 029144

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNKKKKKRKAQKACSIL
Secondary Structure (PSIPRED)
cccccEEEEEEEcccccccEEEEEcccccccccccccccccccEEEEEEccEEEEEEcEEcccccccccccccccccccEEEEEEEcccccHHHHHccccHHHHHHHcccccEEEEEEcccccccHHHHHHccccccccHHHHHHHHHHHcccEEEEccHHccccHHHHHHHHHHHHccccccHHHHccccccccEEc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEcccccHHHHHHHHHHcccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHcccHHHHcccccEEEEEEEcccHHHHHHHHHcHHHHHHHHcccccEEEEEEcHHHcccHHHHHHHcccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHHcccccccccccccccccEEEc
Coil and Loop (DISEMBL)
msasrfikcvtvgdgavgkTCMLISytsntfptdyvptvfdnfsanvvvdgstvnlglwdtagqedynrlrplsyrgADVFLLAFSLISKASYENVAKKWIPelrhyapgvpiilvgtkldlrddkqfladhpgavpittAQGEELRKligapvyiecssKTQQNVKAVFDAAIKVVlqppknkkkkkRKAQKACSIL
Flexible Loop (DISEMBL)
msasrfikcvtvgdgavgkTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKvvlqppknkkkkkrkaqkacsil
Low Complexity Region (SEG)
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIkvvlqppknkkkkkrkaqkaCSIL
Disordered region (IsUnstruct)
*****FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL********************
Disordered Region (DISOPRED)
****RFI*CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ**********ITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV***************QKACSIL
Disordered Region (DISEMBL)
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP******************
Disordered Region (DISPRO)
**ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNKKKKKRKAQKACSIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
O04369	197	Rac-like GTP-binding prot	N/A	no	0.994	1.0	0.944	1e-103
Q38912	198	Rac-like GTP-binding prot	yes	no	1.0	1.0	0.924	1e-101
Q6EP31	197	Rac-like GTP-binding prot	yes	no	0.898	0.903	0.960	1e-98
Q6Z7L8	197	Rac-like GTP-binding prot	yes	no	0.994	1.0	0.858	3e-98
Q38937	196	Rac-like GTP-binding prot	no	no	0.898	0.908	0.955	3e-98
Q39435	197	Rac-like GTP-binding prot	N/A	no	0.898	0.903	0.943	1e-97
Q6ZHA3	197	Rac-like GTP-binding prot	no	no	0.994	1.0	0.909	3e-97
Q35638	197	Rac-like GTP-binding prot	N/A	no	0.898	0.903	0.938	7e-97
P92978	197	Rac-like GTP-binding prot	no	no	0.898	0.903	0.926	2e-96
Q38919	195	Rac-like GTP-binding prot	no	no	0.888	0.902	0.948	4e-96

>sp|O04369|RAC1_LOTJA Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/198 (94%), Positives = 193/198 (97%), Gaps = 1/198 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDK FLADHPGAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFDAAIKVVLQ 
Sbjct: 121 DLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQ- 179

Query: 181 PKNKKKKKRKAQKACSIL 198
           P  +KKKKR+AQK+CSIL
Sbjct: 180 PPKQKKKKREAQKSCSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.
Lotus japonicus (taxid: 34305)

>sp|Q38912|RAC3_ARATH Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1

 Score =  366 bits (939), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/198 (92%), Positives = 195/198 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSL+SKASYENV+KKW+PELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQF A+HPGAVPI+TAQGEEL+KLIGAP YIECS+KTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKNKKKKKRKAQKACSIL 198
           PKNKKKKKRK+QK CSIL
Sbjct: 181 PKNKKKKKRKSQKGCSIL 198

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation. May be involved in cell polarity control during the actin-dependent tip growth of root hairs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6EP31|RAC5_ORYSJ Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2

 Score =  358 bits (919), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 171/178 (96%), Positives = 174/178 (97%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           DLRDDKQF  DHPGAVPI+TAQGEELRKLIGA  YIECSSKTQQN+KAVFDAAIKVVL
Sbjct: 121 DLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYIECSSKTQQNIKAVFDAAIKVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z7L8|RAC7_ORYSJ Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1

 Score =  357 bits (916), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 170/198 (85%), Positives = 183/198 (92%), Gaps = 1/198 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN+ KKWIPELRHYAP VPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLR+DKQF  DHPG  PI+TAQGEEL+++IGA  YIECSSKTQQNVK+VFD+AIKVVL P
Sbjct: 121 DLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAYIECSSKTQQNVKSVFDSAIKVVLCP 180

Query: 181 PKNKKKKKRKAQKACSIL 198
           PK KKK  RK Q++C IL
Sbjct: 181 PKPKKKNTRK-QRSCWIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38937|RAC5_ARATH Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1

 Score =  357 bits (916), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 170/178 (95%), Positives = 175/178 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           DLRDDKQF  DHPGAVPITT QGEEL+KLIG+P+YIECSSKTQQNVKAVFDAAIKVVL
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39435|RAC1_BETVU Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1

 Score =  355 bits (910), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 168/178 (94%), Positives = 175/178 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           DLRDDKQF  DHPGAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFDAAIKVVL
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Beta vulgaris (taxid: 161934)

>sp|Q6ZHA3|RAC6_ORYSJ Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1

 Score =  353 bits (907), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 180/198 (90%), Positives = 185/198 (93%), Gaps = 1/198 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQF  DHPGAVPITTAQGEELRK IGAP YIECSSKTQ NVK VFDAAIKVVLQ 
Sbjct: 121 DLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQ- 179

Query: 181 PKNKKKKKRKAQKACSIL 198
           P   KKKK+  + ACSIL
Sbjct: 180 PPKAKKKKKAQRGACSIL 197

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q35638|RHO1_PEA Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1

 Score =  352 bits (904), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 167/178 (93%), Positives = 174/178 (97%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           DLRDDKQF  DHPGAVPITTAQGEELRKLI AP YIECSSK+QQNVKAVFDAAI+VVL
Sbjct: 121 DLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYIECSSKSQQNVKAVFDAAIRVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation (By similarity). May be involved in cell polarity control during the actin-dependent tip growth of pollen tubes.

Pisum sativum (taxid: 3888)

>sp|P92978|RAC11_ARATH Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2

 Score =  351 bits (900), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 165/178 (92%), Positives = 174/178 (97%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1   MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           DLRDDKQF  DHPGAVPITTAQGEELRK IGAP YIECSSKTQ+NVKAVFDAAI+VVL
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAIRVVL 178

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38919|RAC4_ARATH Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1

 Score =  350 bits (898), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 167/176 (94%), Positives = 172/176 (97%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
           ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTA
Sbjct: 2   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
           GQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKLDL
Sbjct: 62  GQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDL 121

Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           RDDKQF  DHPGAVPITT QGEEL+KLIG+ VYIECSSKTQQNVKAVFDAAIKVVL
Sbjct: 122 RDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAAIKVVL 177

Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation (By similarity). May be involved in cell polarity control during the actin-dependent tip growth of root hairs. May regulate a WAVE complex that activates the Arp2/3 complex.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
4586584	197	rac-type small GTP-binding protein [Cice	0.994	1.0	0.939	1e-105
388518421	197	unknown [Lotus japonicus]	0.994	1.0	0.934	1e-105
357473803	197	Rac-like GTP-binding protein [Medicago t	0.994	1.0	0.929	1e-104
47600747	197	small GTPase Rac4 [Medicago sativa]	0.994	1.0	0.924	1e-104
388518567	197	unknown [Medicago truncatula]	0.994	1.0	0.924	1e-103
74095369	197	putative Rho GTPase [Medicago sativa sub	0.994	1.0	0.914	1e-103
225428021	198	PREDICTED: rac-like GTP-binding protein	1.0	1.0	0.974	1e-102
224078303	198	predicted protein [Populus trichocarpa]	1.0	1.0	0.974	1e-102
51701717	197	RecName: Full=Rac-like GTP-binding prote	0.994	1.0	0.944	1e-101
255579965	198	rac gtpase, putative [Ricinus communis]	1.0	1.0	0.979	1e-100

>gi|4586584|dbj|BAA76424.1| rac-type small GTP-binding protein [Cicer arietinum]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/198 (93%), Positives = 192/198 (96%), Gaps = 1/198 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLIS+ASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQF  DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ+NVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFQDHPGAVPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDAAIKVVLQP 180

Query: 181 PKNKKKKKRKAQKACSIL 198
           PK +KK KRK QKACSIL
Sbjct: 181 PK-QKKTKRKGQKACSIL 197

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518421|gb|AFK47272.1| unknown [Lotus japonicus]

 Score =  384 bits (987), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/198 (93%), Positives = 192/198 (96%), Gaps = 1/198 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSAS+FIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASKFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLIS+A YEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISRAGYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQF  +HPGAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFINHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKNKKKKKRKAQKACSIL 198
           PK +KK KRKAQKACSIL
Sbjct: 181 PK-QKKNKRKAQKACSIL 197

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473803|ref|XP_003607186.1| Rac-like GTP-binding protein [Medicago truncatula] gi|20269983|gb|AAM18133.1|AF498357_1 small G-protein ROP3 [Medicago truncatula] gi|355508241|gb|AES89383.1| Rac-like GTP-binding protein [Medicago truncatula]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/198 (92%), Positives = 190/198 (95%), Gaps = 1/198 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDD QF  DHPGA PITTAQGEELRKLIGAPVYIECSSKTQ+NVKAVFD+AIKVVLQP
Sbjct: 121 DLRDDSQFFQDHPGAAPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDSAIKVVLQP 180

Query: 181 PKNKKKKKRKAQKACSIL 198
           PK +KK KRK QKACSIL
Sbjct: 181 PK-QKKTKRKGQKACSIL 197

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|47600747|emb|CAG30067.1| small GTPase Rac4 [Medicago sativa]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 183/198 (92%), Positives = 190/198 (95%), Gaps = 1/198 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDD QF  DHPGA PITTAQGEELRKLIGAPVYIECSSKTQ+NVKAVFD+AIKVVLQP
Sbjct: 121 DLRDDSQFFQDHPGAAPITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDSAIKVVLQP 180

Query: 181 PKNKKKKKRKAQKACSIL 198
           PK +KK KRK QKACSI+
Sbjct: 181 PK-QKKTKRKGQKACSIM 197

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518567|gb|AFK47345.1| unknown [Medicago truncatula]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/198 (92%), Positives = 189/198 (95%), Gaps = 1/198 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDD QF  DHPGA  ITTAQGEELRKLIGAPVYIECSSKTQ+NVKAVFD+AIKVVLQP
Sbjct: 121 DLRDDSQFFQDHPGAASITTAQGEELRKLIGAPVYIECSSKTQKNVKAVFDSAIKVVLQP 180

Query: 181 PKNKKKKKRKAQKACSIL 198
           PK +KK KRK QKACSIL
Sbjct: 181 PK-QKKTKRKGQKACSIL 197

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|74095369|emb|CAI84892.1| putative Rho GTPase [Medicago sativa subsp. x varia]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 181/198 (91%), Positives = 189/198 (95%), Gaps = 1/198 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS SRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGST+NLGLWD
Sbjct: 1   MSGSRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDD QF  DHPGA PITTAQGEEL+KLIGAP+YIEC SKTQ+NVKAVFD+AIKVVLQP
Sbjct: 121 DLRDDSQFFQDHPGAAPITTAQGEELKKLIGAPIYIECYSKTQKNVKAVFDSAIKVVLQP 180

Query: 181 PKNKKKKKRKAQKACSIL 198
           PK +KK KRK QKACSIL
Sbjct: 181 PK-QKKTKRKGQKACSIL 197

Source: Medicago sativa subsp. x varia

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428021|ref|XP_002278633.1| PREDICTED: rac-like GTP-binding protein RAC1 isoform 2 [Vitis vinifera] gi|225428023|ref|XP_002278595.1| PREDICTED: rac-like GTP-binding protein RAC1 isoform 1 [Vitis vinifera] gi|147768427|emb|CAN73627.1| hypothetical protein VITISV_026639 [Vitis vinifera] gi|297744613|emb|CBI37875.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/198 (97%), Positives = 194/198 (97%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQF  DHPGAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKNKKKKKRKAQKACSIL 198
           PK KK+KKRKAQKACSIL
Sbjct: 181 PKQKKRKKRKAQKACSIL 198

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078303|ref|XP_002305518.1| predicted protein [Populus trichocarpa] gi|222848482|gb|EEE86029.1| predicted protein [Populus trichocarpa]

 Score =  374 bits (961), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/198 (97%), Positives = 194/198 (97%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGCTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGAD+FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADIFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQF  DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFFLDHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKNKKKKKRKAQKACSIL 198
           PK KKKKKRKAQKACSIL
Sbjct: 181 PKQKKKKKRKAQKACSIL 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51701717|sp|O04369.1|RAC1_LOTJA RecName: Full=Rac-like GTP-binding protein RAC1; Flags: Precursor gi|2117168|emb|CAA98189.1| RAC1 [Lotus japonicus]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/198 (94%), Positives = 193/198 (97%), Gaps = 1/198 (0%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDK FLADHPGAVPITTAQGEELRKLIGAP YIECSSKTQQNVKAVFDAAIKVVLQ 
Sbjct: 121 DLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYIECSSKTQQNVKAVFDAAIKVVLQ- 179

Query: 181 PKNKKKKKRKAQKACSIL 198
           P  +KKKKR+AQK+CSIL
Sbjct: 180 PPKQKKKKREAQKSCSIL 197

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579965|ref|XP_002530817.1| rac gtpase, putative [Ricinus communis] gi|223529609|gb|EEF31557.1| rac gtpase, putative [Ricinus communis]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/198 (97%), Positives = 196/198 (98%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQFL DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP
Sbjct: 121 DLRDDKQFLIDHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180

Query: 181 PKNKKKKKRKAQKACSIL 198
           PK KK+KKR+AQKACSIL
Sbjct: 181 PKQKKRKKRRAQKACSIL 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2204380	196	ARAC5 "RAC-like GTP binding pr	0.878	0.887	0.954	1.8e-87
TAIR|locus:2131606	198	RAC3 "RAC-like 3" [Arabidopsis	0.878	0.878	0.925	1.3e-86
UNIPROTKB|Q6ZHA3	197	RAC6 "Rac-like GTP-binding pro	0.878	0.883	0.948	3.3e-86
TAIR|locus:2080878	197	ROP1 "RHO-related protein from	0.878	0.883	0.931	4.3e-86
TAIR|locus:2827916	197	ARAC1 "Arabidopsis RAC-like 1"	0.878	0.883	0.925	8.9e-86
TAIR|locus:2198566	195	ROP2 "RHO-related protein from	0.868	0.882	0.947	1.1e-85
TAIR|locus:2125399	197	RAC6 "RAC-like 6" [Arabidopsis	0.878	0.883	0.913	6.2e-85
TAIR|locus:2161343	201	RAC2 "RAC-like 2" [Arabidopsis	0.878	0.865	0.908	9.1e-84
UNIPROTKB|Q6Z808	214	RAC3 "Rac-like GTP-binding pro	0.873	0.808	0.867	1.1e-80
TAIR|locus:2170778	215	RAC10 "RAC-like 10" [Arabidops	0.873	0.804	0.861	2.2e-80

TAIR|locus:2204380 ARAC5 "RAC-like GTP binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 166/174 (95%), Positives = 171/174 (98%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

Query:   121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             DLRDDKQF  DHPGAVPITT QGEEL+KLIG+P+YIECSSKTQQNVKAVFDAAI
Sbjct:   121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAI 174

GO:0005525 "GTP binding" evidence=IEA;IDA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0003924 "GTPase activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2131606 RAC3 "RAC-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 161/174 (92%), Positives = 172/174 (98%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFLLAFSL+SKASYENV+KKW+PELRHYAPGVPIILVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

Query:   121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             DLRDDKQF A+HPGAVPI+TAQGEEL+KLIGAP YIECS+KTQQNVKAVFDAAI
Sbjct:   121 DLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYIECSAKTQQNVKAVFDAAI 174

GO:0003924 "GTPase activity" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030427 "site of polarized growth" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

UNIPROTKB|Q6ZHA3 RAC6 "Rac-like GTP-binding protein 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 165/174 (94%), Positives = 168/174 (96%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKL 120

Query:   121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             DLRDDKQF  DHPGAVPITTAQGEELRK IGAP YIECSSKTQ NVK VFDAAI
Sbjct:   121 DLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAI 174

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2080878 ROP1 "RHO-related protein from plants 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 162/174 (93%), Positives = 170/174 (97%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct:     1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query:   121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             DLRDDKQF  DHPGAVPITTAQGEELRK IGAP YIECSSKTQ+NVKAVFDAAI
Sbjct:   121 DLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYIECSSKTQENVKAVFDAAI 174

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0030833 "regulation of actin filament polymerization" evidence=IGI

GO:0030834 "regulation of actin filament depolymerization" evidence=IGI

GO:0017157 "regulation of exocytosis" evidence=IDA

GO:0051650 "establishment of vesicle localization" evidence=IDA

GO:0032794 "GTPase activating protein binding" evidence=IPI

GO:0045177 "apical part of cell" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0030036 "actin cytoskeleton organization" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0003924 "GTPase activity" evidence=ISS

TAIR|locus:2827916 ARAC1 "Arabidopsis RAC-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 161/174 (92%), Positives = 170/174 (97%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query:   121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             DLRDDKQF  DHPGAVPITTAQGEEL+KLIGAP YIECSSKTQ+NVK VFDAAI
Sbjct:   121 DLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYIECSSKTQENVKGVFDAAI 174

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2198566 ROP2 "RHO-related protein from plants 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
 Identities = 163/172 (94%), Positives = 168/172 (97%)

Query:     3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
             ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTA
Sbjct:     2 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTA 61

Query:    63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
             GQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKLDL
Sbjct:    62 GQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDL 121

Query:   123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             RDDKQF  DHPGAVPITT QGEEL+KLIG+ VYIECSSKTQQNVKAVFDAAI
Sbjct:   122 RDDKQFFIDHPGAVPITTNQGEELKKLIGSAVYIECSSKTQQNVKAVFDAAI 173

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009860 "pollen tube growth" evidence=RCA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA;IMP

GO:0000902 "cell morphogenesis" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0009416 "response to light stimulus" evidence=IDA

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2125399 RAC6 "RAC-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 850 (304.3 bits), Expect = 6.2e-85, P = 6.2e-85
 Identities = 159/174 (91%), Positives = 169/174 (97%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct:     1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

Query:   121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             DLRDDKQF  DHPGAVPITT QGEEL+KLIGAP YIECSSK+Q+NVK VFDAAI
Sbjct:   121 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 174

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2161343 RAC2 "RAC-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
 Identities = 158/174 (90%), Positives = 166/174 (95%)

Query:     1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
             MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct:     1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
             TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN+ KKW+PEL+HYAPG+PI+LVGTKL
Sbjct:    61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120

Query:   121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             DLRDDKQFL DHPGA  ITTAQGEELRK+IGA  Y+ECSSKTQQNVKAVFD AI
Sbjct:   121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007015 "actin filament organization" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

UNIPROTKB|Q6Z808 RAC3 "Rac-like GTP-binding protein 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 150/173 (86%), Positives = 162/173 (93%)

Query:     2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
             SASRFIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVVVD +TVNLGLWDT
Sbjct:     4 SASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVDSTTVNLGLWDT 63

Query:    62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
             AGQEDYNRLRPLSYRGADVF+LAFSL+S+ASYEN+ KKWIPEL+HYAPGVPI+LVGTKLD
Sbjct:    64 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENIMKKWIPELQHYAPGVPIVLVGTKLD 123

Query:   122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             LR+DK +L DHPG +P+TTAQGEELRK IGA  YIECSSKTQQNVK VFDAAI
Sbjct:   124 LREDKHYLLDHPGMIPVTTAQGEELRKQIGAAYYIECSSKTQQNVKGVFDAAI 176

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2170778 RAC10 "RAC-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
 Identities = 149/173 (86%), Positives = 165/173 (95%)

Query:     2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
             SAS+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANVVV+G+TVNLGLWDT
Sbjct:     4 SASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVVVEGTTVNLGLWDT 63

Query:    62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
             AGQEDYNRLRPLSYRGADVF+L+FSL+S+ASYENV KKWIPEL+H+APGVP++LVGTKLD
Sbjct:    64 AGQEDYNRLRPLSYRGADVFVLSFSLVSRASYENVFKKWIPELQHFAPGVPLVLVGTKLD 123

Query:   122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             LR+DK +LADHPG  P+TTAQGEELRKLIGA  YIECSSKTQQNVKAVFD+AI
Sbjct:   124 LREDKHYLADHPGLSPVTTAQGEELRKLIGATYYIECSSKTQQNVKAVFDSAI 176

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IDA

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0007015 "actin filament organization" evidence=RCA

GO:0009531 "secondary cell wall" evidence=IDA

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0005525 "GTP binding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34144	RAC1A_DICDI	No assigned EC number	0.6134	0.9545	0.9742	yes	no
Q6Z7L8	RAC7_ORYSJ	No assigned EC number	0.8585	0.9949	1.0	yes	no
Q6RUV5	RAC1_RAT	No assigned EC number	0.6486	0.9242	0.9531	yes	no
Q67VP4	RAC4_ORYSJ	No assigned EC number	0.8777	0.9090	0.8372	no	no
P63000	RAC1_HUMAN	No assigned EC number	0.6486	0.9242	0.9531	yes	no
Q6Z808	RAC3_ORYSJ	No assigned EC number	0.8232	0.9949	0.9205	no	no
Q6ZHA3	RAC6_ORYSJ	No assigned EC number	0.9090	0.9949	1.0	no	no
C4YDI6	CDC42_CANAW	No assigned EC number	0.5773	0.9393	0.9738	N/A	no
Q9SBJ6	RAC6_ARATH	No assigned EC number	0.9101	0.8989	0.9035	no	no
Q16YG0	CDC42_AEDAE	No assigned EC number	0.5591	0.9292	0.9633	N/A	no
P40792	RAC1_DROME	No assigned EC number	0.6451	0.9040	0.9322	yes	no
P62998	RAC1_BOVIN	No assigned EC number	0.6486	0.9242	0.9531	yes	no
P62999	RAC1_CANFA	No assigned EC number	0.6486	0.9242	0.9531	yes	no
P19073	CDC42_YEAST	No assigned EC number	0.5567	0.9393	0.9738	yes	no
O82481	RAC10_ARATH	No assigned EC number	0.8491	0.9040	0.8325	no	no
O82480	RAC7_ARATH	No assigned EC number	0.785	0.9848	0.9330	no	no
Q68Y52	RAC2_ORYSJ	No assigned EC number	0.765	0.9848	0.9112	no	no
Q41253	RAC13_GOSHI	No assigned EC number	0.9044	0.8989	0.9081	N/A	no
Q9SSX0	RAC1_ORYSJ	No assigned EC number	0.7823	0.9747	0.9018	no	no
Q38903	RAC2_ARATH	No assigned EC number	0.8938	0.9040	0.8905	no	no
Q38902	RAC1_ARATH	No assigned EC number	0.9213	0.8989	0.9035	no	no
Q41254	RAC9_GOSHI	No assigned EC number	0.8988	0.8989	0.9081	N/A	no
Q24814	RACA_ENTHI	No assigned EC number	0.5721	0.9646	0.9744	N/A	no
Q9XGU0	RAC9_ARATH	No assigned EC number	0.7772	0.9696	0.9186	no	no
O04369	RAC1_LOTJA	No assigned EC number	0.9444	0.9949	1.0	N/A	no
Q40220	RAC2_LOTJA	No assigned EC number	0.9050	0.9040	0.9132	N/A	no
Q01112	CDC42_SCHPO	No assigned EC number	0.5806	0.9191	0.9479	yes	no
O76321	RECG_ENTHI	No assigned EC number	0.6158	0.8737	0.8693	N/A	no
Q38919	RAC4_ARATH	No assigned EC number	0.9488	0.8888	0.9025	no	no
Q35638	RHO1_PEA	No assigned EC number	0.9382	0.8989	0.9035	N/A	no
Q9SU67	RAC8_ARATH	No assigned EC number	0.8435	0.9040	0.8605	no	no
P0CY33	CDC42_CANAL	No assigned EC number	0.5773	0.9393	0.9738	N/A	no
P63001	RAC1_MOUSE	No assigned EC number	0.6486	0.9242	0.9531	yes	no
P92978	RAC11_ARATH	No assigned EC number	0.9269	0.8989	0.9035	no	no
Q38937	RAC5_ARATH	No assigned EC number	0.9550	0.8989	0.9081	no	no
Q38912	RAC3_ARATH	No assigned EC number	0.9242	1.0	1.0	yes	no
Q39435	RAC1_BETVU	No assigned EC number	0.9438	0.8989	0.9035	N/A	no
Q6EP31	RAC5_ORYSJ	No assigned EC number	0.9606	0.8989	0.9035	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-135
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-109
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-105
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-91
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	3e-86
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	7e-78
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	2e-77
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-76
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-72
pfam00071	162	pfam00071, Ras, Ras family	3e-71
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	5e-71
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	3e-60
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-53
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-52
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-52
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-43
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-43
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-42
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	5e-40
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-39
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	7e-37
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	3e-36
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	6e-36
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-35
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	3e-35
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	3e-33
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	3e-33
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	4e-32
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-31
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-31
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	4e-31
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-30
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	6e-30
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	3e-29
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	4e-29
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	7e-29
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	3e-28
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	5e-28
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	4e-27
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	7e-27
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-26
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-26
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-26
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-26
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	1e-25
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-25
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-25
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	6e-25
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-24
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	2e-24
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	5e-24
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	9e-24
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	3e-23
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	4e-23
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-22
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	7e-22
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	9e-22
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-21
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	7e-21
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-20
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-20
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-20
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-20
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-20
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	5e-20
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-19
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	5e-19
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-18
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-18
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-17
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	5e-17
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-16
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	3e-16
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	5e-16
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-15
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-15
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-14
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-14
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	7e-14
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	8e-14
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-13
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	8e-13
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-12
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	1e-12
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-11
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	8e-10
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	9e-07
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	4e-05
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-04

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score =  376 bits (966), Expect = e-135
 Identities = 166/173 (95%), Positives = 168/173 (97%)

Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65
           FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQE
Sbjct: 1   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           DYNRLRPLSYRGADVFLLAFSLISKASYENV KKWIPELRHYAPGVPI+LVGTKLDLRDD
Sbjct: 61  DYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLDLRDD 120

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           KQF ADHPGAVPITTAQGEELRK IGA  YIECSSKTQQNVKAVFDAAIKVVL
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  309 bits (793), Expect = e-109
 Identities = 107/174 (61%), Positives = 130/174 (74%), Gaps = 2/174 (1%)

Query: 9   CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN 68
            V VGDGAVGKTC+LI YT+N FP DYVPTVF+N+SA+V VDG  V LGLWDTAGQEDY+
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD 60

Query: 69  RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF 128
           RLRPLSY   DVFL+ FS+ S AS+ENV +KW PE++H+ P VPIILVGTKLDLR+DK  
Sbjct: 61  RLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKST 120

Query: 129 LAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           L +       P+T  QG+ L K IGA  Y+ECS+ TQ+ V+ VF+ AI+  L  
Sbjct: 121 LEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVFEEAIRAALNK 174

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  299 bits (768), Expect = e-105
 Identities = 113/171 (66%), Positives = 132/171 (77%), Gaps = 1/171 (0%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IK V VGDGAVGKTC+LISYT+N FPT+YVPTVFDN+SANV VDG  VNLGLWDTAGQE+
Sbjct: 1   IKIVVVGDGAVGKTCLLISYTTNKFPTEYVPTVFDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFLL FS+ S +S+ENV  KW PE++HY P VPIILVGTK+DLRDD 
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDG 120

Query: 127 QFLADH-PGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 176
             L        PIT  +GE+L K IGA  Y+ECS+ TQ+ +K VFD AI+ 
Sbjct: 121 NTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIRA 171

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score =  264 bits (676), Expect = 2e-91
 Identities = 114/173 (65%), Positives = 133/173 (76%), Gaps = 2/173 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121

Query: 127 QFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI+ V
Sbjct: 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 174

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score =  252 bits (645), Expect = 3e-86
 Identities = 99/195 (50%), Positives = 127/195 (65%), Gaps = 4/195 (2%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 65
           +K V VGDG  GKTC+L+ Y   +FP +YVPTVF+N+   + V +G  + L LWDTAGQE
Sbjct: 4   VKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           DY+RLRPLSY   DV L+ +S+ +  S +NV  KW PE+ H+ PG PI+LVG K DLR D
Sbjct: 64  DYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDLRKD 123

Query: 126 KQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 183
           K  ++     G  P+T  QGE + K IGA  YIECS+K  +NV  VFDAAI V L     
Sbjct: 124 KNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVFDAAINVALSKSGR 183

Query: 184 KKKKKRKAQKACSIL 198
             +KK+K +K C IL
Sbjct: 184 AARKKKK-KKKCVIL 197

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score =  231 bits (589), Expect = 7e-78
 Identities = 105/184 (57%), Positives = 126/184 (68%), Gaps = 2/184 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LI YT+N FP +Y+PTVFDN+SA   VDG TV+L LWDTAGQE+
Sbjct: 4   IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLR LSY   +VF++ FS+ S +SYENV  KW PE+ H+ P VPI+LVGTK DLR+D 
Sbjct: 64  YDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDA 123

Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184
             L      G  PIT  QG  L K I A  Y+ECS+  Q  VK VF  A++ VL P   K
Sbjct: 124 DTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNPTPIK 183

Query: 185 KKKK 188
             K 
Sbjct: 184 DTKS 187

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score =  229 bits (585), Expect = 2e-77
 Identities = 97/174 (55%), Positives = 127/174 (72%), Gaps = 2/174 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 2   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121

Query: 127 QFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
             +         PIT   GE+L + + A  Y+ECS+ TQ+ +K VFD AI   L
Sbjct: 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 175

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score =  227 bits (580), Expect = 1e-76
 Identities = 92/170 (54%), Positives = 126/170 (74%), Gaps = 2/170 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +KCV VGDGAVGKT +++SYT+N +PT+YVPT FDNFS  V+VDG  V L L DTAGQ++
Sbjct: 1   LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +++LRPL Y   DVFLL FS+++ +S++N+++KWIPE+R + P  PIILVGT+ DLR D 
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120

Query: 127 QFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             L      G  P++ ++ + L + IGA  YIECS+ TQ+N+K VFD AI
Sbjct: 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score =  216 bits (551), Expect = 2e-72
 Identities = 98/174 (56%), Positives = 133/174 (76%), Gaps = 2/174 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQED
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DLRDD 
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRDDP 120

Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           + LA  +     PIT  QG++L K IGA  Y+ECS+ TQ+ +K VFD AI  +L
Sbjct: 121 KTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 174

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  212 bits (543), Expect = 3e-71
 Identities = 78/174 (44%), Positives = 111/174 (63%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V VGDG VGK+ +LI +T N FP +Y+PT+  D ++  + VDG TV L +WDTAGQE 
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDD 125
           +  LRPL YRGA  FLL + + S+ S+ENV KKW+ E+  +A   VPI+LVG K DL D 
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENV-KKWLEEILRHADENVPIVLVGNKCDLEDQ 119

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +           ++T +GE L K +G P ++E S+KT +NV+  F+   + +L+
Sbjct: 120 RV----------VSTEEGEALAKELGLP-FMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score =  212 bits (542), Expect = 5e-71
 Identities = 88/173 (50%), Positives = 119/173 (68%), Gaps = 2/173 (1%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 62

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+ 
Sbjct: 63  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 122

Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
            + +       P+   +G  + + IGA  Y+ECS+KT++ V+ VF+ A +  L
Sbjct: 123 TIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEGVREVFEMATRAAL 175

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score =  186 bits (473), Expect = 3e-60
 Identities = 85/190 (44%), Positives = 113/190 (59%), Gaps = 2/190 (1%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKT +L  +T   FP +Y PTVF+N+  +  VDG  V L LWDTAGQE+Y
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEY 62

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
            RLRPLSY  A V L+ F++ +  S ENV  KWI E+R Y P VP+ILVG K DLR +  
Sbjct: 63  ERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEAV 122

Query: 128 FLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNKKKK 187
              ++     +   Q + + + IGA  Y+ECS+ T + V  VF+AA +  L   K+ K++
Sbjct: 123 AKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATRAALLVRKSGKEE 182

Query: 188 KRKAQKACSI 197
                  C I
Sbjct: 183 --PGANCCII 190

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score =  168 bits (427), Expect = 2e-53
 Identities = 72/170 (42%), Positives = 105/170 (61%), Gaps = 3/170 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  ++FP +YVPTVF+N++A+  VD   + L LWDT+G   
Sbjct: 2   CKIVLVGDSQCGKTALLQVFAKDSFPENYVPTVFENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+ +RPLSY  +D  L+ F +    + ++V KKW  E+R + P  P++LVG K DLR D 
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRTDL 121

Query: 127 QFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN-VKAVFDAA 173
             L +  +   +P++  QG  L K IGA  Y+ECS+KT +N V+ VF+ A
Sbjct: 122 STLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSENSVRDVFEMA 171

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  165 bits (420), Expect = 2e-52
 Identities = 63/171 (36%), Positives = 97/171 (56%), Gaps = 14/171 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +GD  VGKT +L+ +  N F  +Y  T+  +F S  + VDG  V L +WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRD 124
            +  +    YRGA   +L + + ++ S+EN+  KW+ EL+ YAP  +PIILVG K DL D
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENL-DKWLNELKEYAPPNIPIILVGNKSDLED 119

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
           ++Q          ++T + ++  K  G   + E S+KT +NV   F++  +
Sbjct: 120 ERQ----------VSTEEAQQFAKENGLL-FFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score =  166 bits (421), Expect = 2e-52
 Identities = 77/176 (43%), Positives = 105/176 (59%), Gaps = 4/176 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +GDGA GKT +L  +T   FP  Y PTVF+N+  ++ VDG  V L LWDTAGQE++
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYIHDIFVDGLAVELSLWDTAGQEEF 61

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLR LSY    V +L FS+ +  S ENV  KW+ E+RH+ PGV ++LV  K DLR+ + 
Sbjct: 62  DRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPRN 121

Query: 128 FLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL--QPP 181
                     I+  +G  + K I A  Y+ECS+K  + V   F  A +V L  +PP
Sbjct: 122 ERDRGTHT--ISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAARVALNARPP 175

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  142 bits (361), Expect = 1e-43
 Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+ +L  +T   F   Y  T+  +F    + VDG  V L +WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   LL + + ++ S+EN+ + W+ ELR YA P V I+LVG K DL +
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENL-ENWLKELREYASPNVVIMLVGNKSDLEE 119

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
            +Q          ++  + E   +  G P + E S+KT  NV+  F+   + +L+
Sbjct: 120 QRQ----------VSREEAEAFAEEHGLP-FFETSAKTNTNVEEAFEELAREILK 163

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  143 bits (362), Expect = 4e-43
 Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 8/204 (3%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWD 60
              +  K V +GDG VGKT +L     + FP  Y PT+ +   A  +      + L LWD
Sbjct: 1   LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTK 119
           TAGQE+Y  LRP  YRGA+  L+ +    + S + + ++W+ ELR  AP  VPI+LVG K
Sbjct: 61  TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120

Query: 120 LDLRDDKQFLAD----HPGAVPITTAQGEELRKLIGAPVYIECSSK--TQQNVKAVFDAA 173
           +DL D++    +        V +     + +   +  P  +E S+K  T  NV  +F   
Sbjct: 121 IDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKEL 180

Query: 174 IKVVLQPPKNKKKKKRKAQKACSI 197
           ++ +L+  +    K    Q     
Sbjct: 181 LRKLLEEIEKLVLKNELRQLDRLN 204

Length = 219

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  139 bits (354), Expect = 2e-42
 Identities = 58/170 (34%), Positives = 98/170 (57%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + I + S  F  +Y PT+ D++   +VVDG T  L + DTAGQE++
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYTLDILDTAGQEEF 60

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  D F+L +S+ S+ S+E +   ++ I  ++     VPI+LVG K DL ++
Sbjct: 61  SAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKED-VPIVLVGNKCDLENE 119

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
           +Q          ++T +GE L +  G P ++E S+KT  N+  +F+  ++
Sbjct: 120 RQ----------VSTEEGEALAEEWGCP-FLETSAKTNINIDELFNTLVR 158

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score =  134 bits (338), Expect = 5e-40
 Identities = 66/169 (39%), Positives = 98/169 (57%), Gaps = 3/169 (1%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   Y
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 66

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPLSY  +D  L+ F +    + ++V KKW  E++ + P   ++LVG K DLR D  
Sbjct: 67  DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVS 126

Query: 128 FLADHPG--AVPITTAQGEELRKLIGAPVYIECSSKTQQN-VKAVFDAA 173
            L +       P++  QG  + K IGA  YIECS+   +N V+ +F  A
Sbjct: 127 TLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score =  133 bits (337), Expect = 2e-39
 Identities = 68/194 (35%), Positives = 107/194 (55%), Gaps = 5/194 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT +L  +  + +P  YVPTVF+N++A+  +D   + L +WDT+G   Y
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENYTASFEIDKHRIELNMWDTSGSSYY 62

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPL+Y  +D  L+ F +    + ++V KKW  E + + P   ++LVG KLD+R D  
Sbjct: 63  DNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMRTDLS 122

Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN-VKAVFDAAIKVVLQ--PPK 182
            L +      +P+T  QG  L + +GA  Y+ECSS+  +N V+ VF       ++   P 
Sbjct: 123 TLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENSVRDVFHVTTLASVRREHPS 182

Query: 183 NKKKKKRKAQKACS 196
            K+   R+  K  S
Sbjct: 183 LKRSTSRRGLKRIS 196

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score =  127 bits (321), Expect = 7e-37
 Identities = 66/183 (36%), Positives = 99/183 (54%), Gaps = 3/183 (1%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 74

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPL Y  +D  LL F +     +++  KKW  E+  Y P   I+L+G K DLR D  
Sbjct: 75  DNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDLS 134

Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKT-QQNVKAVFDAAIKVVLQPPKNK 184
            L +  +    PI+  QG  + K +GA  Y+ECS+ T ++++ ++F  A  + +      
Sbjct: 135 TLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEKSIHSIFRTASLLCINKLSPL 194

Query: 185 KKK 187
            KK
Sbjct: 195 AKK 197

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  123 bits (312), Expect = 3e-36
 Identities = 54/165 (32%), Positives = 89/165 (53%), Gaps = 14/165 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + I +    F  DY PT+ D++   + +DG    L + DTAGQE++
Sbjct: 2   KLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 61

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + FLL +S+  + S+E + K  + I  ++     VPI+LVG K DL  +
Sbjct: 62  SAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRD-DVPIVLVGNKCDLESE 120

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +           ++T +G+EL +  G P ++E S+K + NV   F
Sbjct: 121 RV----------VSTEEGKELARQWGCP-FLETSAKERVNVDEAF 154

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  123 bits (311), Expect = 6e-36
 Identities = 54/165 (32%), Positives = 91/165 (55%), Gaps = 14/165 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + I +    F  +Y PT+ D++   + +DG    L + DTAGQE++
Sbjct: 4   KLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEF 63

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + FLL +S+  + S+E +AK  + I  ++     VPI+LVG K DL ++
Sbjct: 64  SAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDD-VPIVLVGNKCDLENE 122

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +           ++T +G+EL +  G P ++E S+K + NV   F
Sbjct: 123 RV----------VSTEEGKELARQWGCP-FLETSAKERINVDEAF 156

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  121 bits (306), Expect = 2e-35
 Identities = 54/168 (32%), Positives = 91/168 (54%), Gaps = 14/168 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+G VGKT +++ Y  N F   +  T   +F    V + G  ++L +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y+ L P+ YR AD  +L + +    S++ V KKWI EL+      + +++VG K+DL  
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLER 119

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +           ++ ++ EE  K +GA  + E S+KT + ++ +F +
Sbjct: 120 QRV----------VSKSEAEEYAKSVGAK-HFETSAKTGKGIEELFLS 156

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score =  121 bits (305), Expect = 3e-35
 Identities = 63/169 (37%), Positives = 84/169 (49%), Gaps = 16/169 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
           IK V VGD  VGK+ +L     N    T+Y P    N+   V+  DG T    L DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAP-GVPIILVGTKLDL 122
           EDY+ +R L YR  +  L  F ++      E + +K   E+ H+A  GVPIILVG K+DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 171
           RD K           + T       KL G P  I  S++T +N+ + F 
Sbjct: 122 RDAK-----------LKTHVAFLFAKLNGEP-IIPLSAETGKNIDSAFK 158

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score =  116 bits (292), Expect = 3e-33
 Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 15/165 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG G VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 3   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 62

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + FL  F++ S+ S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 63  SAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAAR 121

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                       ++T QG++L K  G P YIE S+KT+Q V+  F
Sbjct: 122 T-----------VSTRQGQDLAKSYGIP-YIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score =  117 bits (294), Expect = 3e-33
 Identities = 84/194 (43%), Positives = 105/194 (54%), Gaps = 28/194 (14%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDY------VPTVF--DNF--------SANVVVD 50
           IKCV VGD AVGKT ++ +   N   T Y      VPTV+  D +         +  VVD
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 51  GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG 110
           G +V+L LWDT G  D+++ R  +Y  +DV LL FS+ S  S  NV   W PE+RH+ P 
Sbjct: 63  GVSVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR 120

Query: 111 VPIILVGTKLDLRD---DKQFLADHPGAVPITTA------QGEELRKLIGAPVYIECSSK 161
           VP+ILVG KLDLR    D+   A  P A PI  A       G  + K +G P Y E S  
Sbjct: 121 VPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYY-ETSVV 179

Query: 162 TQQNVKAVFDAAIK 175
           TQ  VK VFD AI+
Sbjct: 180 TQFGVKDVFDNAIR 193

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  113 bits (285), Expect = 4e-32
 Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 18/169 (10%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANVVVDGSTVNLGLWDTAGQ 64
           K V +GD +VGK+ +++ +  N F  +   T+   F   +  V +D +TV   +WDTAGQ
Sbjct: 3   KLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAF--LTQTVNLDDTTVKFEIWDTAGQ 60

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E Y  L P+ YRGA   ++ + + S+ S+E  AK W+ EL+ H  P + I L G K DL 
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEK-AKSWVKELQEHGPPNIVIALAGNKADLE 119

Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
             +Q          ++T + +E     G  +++E S+KT +NV  +F  
Sbjct: 120 SKRQ----------VSTEEAQEYADENG-LLFMETSAKTGENVNELFTE 157

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  111 bits (281), Expect = 1e-31
 Identities = 62/167 (37%), Positives = 91/167 (54%), Gaps = 16/167 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +GD +VGKT ++  +  +TF   Y  T+  D  S  + VD  TV L LWDTAGQE 
Sbjct: 2   KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQER 61

Query: 67  YNRLRPLSY-RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRD 124
           +  L P SY R + V ++ + + ++ S++N   KWI ++R       II LVG K DL D
Sbjct: 62  FRSLIP-SYIRDSSVAVVVYDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSD 119

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 171
            +Q          ++T +GE+  K   A ++IE S+K   NVK +F 
Sbjct: 120 KRQ----------VSTEEGEKKAKENNA-MFIETSAKAGHNVKQLFK 155

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score =  112 bits (282), Expect = 1e-31
 Identities = 68/199 (34%), Positives = 104/199 (52%), Gaps = 14/199 (7%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
           AS   K V VG G VGK+ + I +  N F  +Y PT+ D++    V+D  T  L + DTA
Sbjct: 2   ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLD 121
           GQE+Y+ +R    R    FL  +S+ S++S+E +A      LR      VP+ILVG K D
Sbjct: 62  GQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCD 121

Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 181
           L  ++Q          ++T +G+EL K  G P ++E S+K + NV   F   ++ + +  
Sbjct: 122 LDSERQ----------VSTGEGQELAKSFGIP-FLETSAKQRVNVDEAFYELVREIRKYL 170

Query: 182 KN--KKKKKRKAQKACSIL 198
           K     +K++K    C IL
Sbjct: 171 KEDMPSQKQKKKGGLCLIL 189

Length = 189

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  110 bits (278), Expect = 4e-31
 Identities = 54/165 (32%), Positives = 88/165 (53%), Gaps = 14/165 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG TV L +WDTAGQE 
Sbjct: 4   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQER 63

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDD 125
           +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL D 
Sbjct: 64  FRTITSSYYRGAHGIIIVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDK 122

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           K           +   + +E    +G P ++E S+K   NV+  F
Sbjct: 123 KV----------VDYTEAKEFADELGIP-FLETSAKNATNVEEAF 156

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  108 bits (273), Expect = 3e-30
 Identities = 48/166 (28%), Positives = 88/166 (53%), Gaps = 14/166 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ ++ ++F   ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   +L + +  + S+EN+ K W+  +  +A   V  +LVG K D+ +
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENI-KNWMRNIDEHASEDVERMLVGNKCDMEE 122

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            +           ++  +GE L +  G   ++E S+K   NV+  F
Sbjct: 123 KRV----------VSKEEGEALAREYGIK-FLETSAKANINVEEAF 157

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  107 bits (270), Expect = 6e-30
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 15/168 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAG 63
           IK + VG+G VGK+ M+  +    F  DY  T+  +F    + +      V L LWDTAG
Sbjct: 1   IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG 60

Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123
           QE+++ +    YRGA   +L FS   + S+E + + W  ++      +P++LV TK+DL 
Sbjct: 61  QEEFDAITKAYYRGAQACILVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLL 119

Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 171
           D          AV IT  + E L K +  P++   S K   NV  +F+
Sbjct: 120 DQ---------AV-ITNEEAEALAKRLQLPLF-RTSVKDDFNVTELFE 156

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  105 bits (265), Expect = 3e-29
 Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 16/168 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+ +L+ +T +TF  D   T+  +F    V VDG  V L +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLR 123
            +  L    YRGA   +L + +  + +++N+   W+ EL  Y+  P    +LVG K+D  
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNL-DTWLNELDTYSTNPDAVKMLVGNKIDKE 119

Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 171
           +             +T  +G++  +      +IE S+KT+  V+  F+
Sbjct: 120 N-----------REVTREEGQKFARKHNML-FIETSAKTRIGVQQAFE 155

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  105 bits (265), Expect = 4e-29
 Identities = 60/174 (34%), Positives = 91/174 (52%), Gaps = 12/174 (6%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              K V VG G VGK+ + I +  + F TDY PT+ D+++    +DG    L + DTAGQ
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWARLDILDTAGQ 60

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E+++ +R    R  + FLL FS+  + S+E V K     LR       P+ILVG K DL 
Sbjct: 61  EEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE 120

Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177
             +Q          ++  +G+EL + +  P YIE S+K + NV   F   ++V+
Sbjct: 121 HQRQ----------VSREEGQELARQLKIP-YIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  105 bits (264), Expect = 7e-29
 Identities = 67/201 (33%), Positives = 102/201 (50%), Gaps = 21/201 (10%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +GDG VGKT + I    N F   Y PT+ D++   VVVDG    L + DTAGQE+Y
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEY 60

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR---HYAPGVPIILVGTKLDLRD 124
             LR    R  + F+L +S+ S++++E V +      R     A  VPI++VG K D   
Sbjct: 61  TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ----- 179
           +++          ++T +G  L + +G   +IE S+KT  NV+  F   ++ + Q     
Sbjct: 121 ERE----------VSTEEGAALARRLGCE-FIEASAKTNVNVERAFYTLVRALRQQRQGG 169

Query: 180 --PPKNKKKKKRKAQKACSIL 198
             P     KKK K ++ C I+
Sbjct: 170 QGPKGGPTKKKEKKKRKCVIM 190

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  103 bits (259), Expect = 3e-28
 Identities = 63/186 (33%), Positives = 91/186 (48%), Gaps = 25/186 (13%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-----------VN 55
           IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV  S            V+
Sbjct: 5   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVH 64

Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRH--YAPGVPI 113
           L LWDTAGQE +  L    +R A  FLL F L S+ S+ NV + W+ +L+   Y     I
Sbjct: 65  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNV-RNWMSQLQAHAYCENPDI 123

Query: 114 ILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           +L+G K DL D ++          ++  Q  EL    G P Y E S+ T QNV+   +  
Sbjct: 124 VLIGNKADLPDQRE----------VSERQARELADKYGIP-YFETSAATGQNVEKAVETL 172

Query: 174 IKVVLQ 179
           + ++++
Sbjct: 173 LDLIMK 178

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  102 bits (257), Expect = 5e-28
 Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V L + DTAGQEDY
Sbjct: 2   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQLNILDTAGQEDY 61

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 126
             +R   +R  + FLL FS+    S+  +A+     LR      VP++LVG K DL D +
Sbjct: 62  AAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLEDKR 121

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           Q        V +   +   L +  G   Y+E S+KT+ NV  VF
Sbjct: 122 Q--------VSV--EEAANLAEQWGVN-YVETSAKTRANVDKVF 154

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  100 bits (251), Expect = 4e-27
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGKTC++  + S TF      T+  +F+   + + G  V L +WDTAGQE 
Sbjct: 5   KIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 64

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDD 125
           +  +    YR A+  ++A+ +  ++S+E+V   WI E+  Y A  V ++L+G K DL + 
Sbjct: 65  FRTITQSYYRSANGAIIAYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           ++          +   +   L +  G    +E S+K   NV+  F
Sbjct: 124 RE----------VLFEEACTLAEHYGILAVLETSAKESSNVEEAF 158

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =   99 bits (250), Expect = 7e-27
 Identities = 58/165 (35%), Positives = 86/165 (52%), Gaps = 14/165 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  D   T+   F+   + +DG T+   +WDTAGQE 
Sbjct: 5   KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQER 64

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 125
           Y  +    YRGA   LL + +  K+++ENV  +W+ ELR +A   + I+LVG K DLR  
Sbjct: 65  YRAITSAYYRGAVGALLVYDITKKSTFENVE-RWLKELRDHADSNIVIMLVGNKSDLRHL 123

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +        AVP   A+    +  +    +IE S+    NV+  F
Sbjct: 124 R--------AVPTEEAKAFAEKNGLS---FIETSALDGTNVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 99.3 bits (247), Expect = 1e-26
 Identities = 59/170 (34%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRL 70
           +GD  VGKTC+L  +T N F + ++ T+  +F    + VDG  V + +WDTAGQE Y  +
Sbjct: 6   IGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTI 65

Query: 71  RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFL 129
               YR A    L + + S+ SY+++  KW+ ++  YAP GV  IL+G K D    +Q  
Sbjct: 66  TKQYYRRAQGIFLVYDISSERSYQHIM-KWVSDVDEYAPEGVQKILIGNKADEEQKRQ-- 122

Query: 130 ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
                   +   QG +L K  G   + E S+ T +N+K  F    ++VLQ
Sbjct: 123 --------VGDEQGNKLAKEYGMDFF-ETSACTNKNIKESFTRLTELVLQ 163

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 99.0 bits (247), Expect = 2e-26
 Identities = 57/174 (32%), Positives = 86/174 (49%), Gaps = 18/174 (10%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +G    GK+C+L  +  N F  D   T+   F + VV V G +V L +WDTAGQE 
Sbjct: 2   KFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   LL + + S+ S+  +   W+ + R  A P + IILVG K DL DD
Sbjct: 62  FRSVTRSYYRGAAGALLVYDITSRESFNALT-NWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 126 KQ--FLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177
           ++  FL           AQ   L       +++E S+ T +NV+  F    + +
Sbjct: 121 REVTFLEAS------RFAQENGL-------LFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 99.0 bits (247), Expect = 2e-26
 Identities = 48/174 (27%), Positives = 89/174 (51%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +DG  + L +WDTAGQE 
Sbjct: 6   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES 65

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   LL + +  + ++ ++   W+ + R ++   + I+L+G K DL   
Sbjct: 66  FRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           ++          ++  +GE   +  G  +++E S+KT  NV+  F    K +  
Sbjct: 125 RE----------VSYEEGEAFAREHGL-IFMETSAKTASNVEEAFINTAKEIYD 167

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 98.8 bits (246), Expect = 3e-26
 Identities = 61/171 (35%), Positives = 91/171 (53%), Gaps = 15/171 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
           K + VGD  VGKTC+L+ +    F    ++ TV   F+  VV VDG  V L +WDTAGQE
Sbjct: 2   KVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQE 61

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRD 124
            +  +    YR A   LL + + +K+S++N+ + W+ E+  YA   V I+L+G K D+  
Sbjct: 62  RFRSVTHAYYRDAHALLLLYDVTNKSSFDNI-RAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
           ++           +    GE L K  G P ++E S+KT  NV+  F A  K
Sbjct: 121 ERV----------VKREDGERLAKEYGVP-FMETSAKTGLNVELAFTAVAK 160

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 96.9 bits (241), Expect = 1e-25
 Identities = 58/180 (32%), Positives = 94/180 (52%), Gaps = 18/180 (10%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S  +K + +GDG VGK+ ++  Y +N F T    T+   F + ++ VDG  V L +WDTA
Sbjct: 3   SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTA 62

Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  LL FS+    S++N++  W  E  +YA        P +++G
Sbjct: 63  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 121

Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177
            K+D+ + +           ++T + +   +  G   Y E S+K   NV A F+ A++ V
Sbjct: 122 NKIDIPERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 96.2 bits (240), Expect = 3e-25
 Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 25/196 (12%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K   +G  +VGK+ + + +    F   Y PT+ + FS  +   G   +L + DTAGQ++Y
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEYHLEIVDTAGQDEY 62

Query: 68  NRLRPLSYR-GADVFLLAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDD 125
           + L P  Y  G   ++L +S+ S+ S+E V   +   L       VPI+LVG K DL  +
Sbjct: 63  SIL-PQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHME 121

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI----KVVLQPP 181
           +Q          ++  +G++L +  GA  ++E S+K  +NV+  F+  I    KV    P
Sbjct: 122 RQ----------VSAEEGKKLAESWGA-AFLESSAKENENVEEAFELLIEEIEKVENPLP 170

Query: 182 KNKKKKKRKAQKACSI 197
             +K K       CS+
Sbjct: 171 PGQKSK-------CSV 179

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 95.7 bits (238), Expect = 3e-25
 Identities = 50/170 (29%), Positives = 93/170 (54%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + + S TF   Y PT+ D +   + VD S   L + DTAG E +
Sbjct: 3   KVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R L  +    F++ +SL+++ +++++   +  I  ++ Y   VPIILVG K+DL  +
Sbjct: 63  ASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEK-VPIILVGNKVDLESE 121

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
           ++          +++A+G  L +  G P ++E S+K++  V  +F   ++
Sbjct: 122 RE----------VSSAEGRALAEEWGCP-FMETSAKSKTMVNELFAEIVR 160

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 96.2 bits (239), Expect = 6e-25
 Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 14/181 (7%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLW 59
           MS +   K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +D   + L +W
Sbjct: 1   MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIW 60

Query: 60  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGT 118
           DTAGQE +  +    YRGA   LL + +  + ++ ++A  W+ + R +A   + I+L+G 
Sbjct: 61  DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLA-SWLEDARQHANANMTIMLIGN 119

Query: 119 KLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           K DL         H  AV  +T +GE+  K  G  +++E S+KT QNV+  F      + 
Sbjct: 120 KCDLA--------HRRAV--STEEGEQFAKEHGL-IFMEASAKTAQNVEEAFIKTAAKIY 168

Query: 179 Q 179
           +
Sbjct: 169 K 169

Length = 210

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 93.9 bits (234), Expect = 2e-24
 Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 17/178 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGKT ++  Y +  F   Y  T+  D  +  V VD   V L +WDTAGQE 
Sbjct: 2   KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA----PG-VPIILVGTKLD 121
           +  L    YRGAD  +L + + +  S+E++   W  E    A    P   P +++G K+D
Sbjct: 62  FQSLGVAFYRGADCCVLVYDVTNPKSFESL-DSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           L + +Q          ++T + ++  K  G   Y E S+K   NV   F+   ++ L+
Sbjct: 121 LEEKRQ----------VSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALE 168

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 93.7 bits (233), Expect = 2e-24
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 21/177 (11%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +  N F   Y PT+ D++   V +DG   +L + DTAG E +
Sbjct: 3   KIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY------APGVPIILVGTKLD 121
             +R L  +    FLL +S+ S+AS   +      ELR        +  VP++LVG K D
Sbjct: 63  TAMRELYIKSGQGFLLVYSVTSEASLNELG-----ELREQVLRIKDSDNVPMVLVGNKAD 117

Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           L DD+Q          ++   G  L +  G   + E S++ + NV  VF   ++ ++
Sbjct: 118 LEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 93.4 bits (232), Expect = 5e-24
 Identities = 58/170 (34%), Positives = 81/170 (47%), Gaps = 18/170 (10%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQ 64
           +K V +G  +VGKT ++  Y  + F    Y  T+   F A  +VV    V LG+WDTAG 
Sbjct: 1   VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS 60

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL-- 122
           E Y  +  + YRGA   ++ + L   +S+E   K W+ EL++      I L GTK DL  
Sbjct: 61  ERYEAMSRIYYRGAKAAIVCYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIE 119

Query: 123 --RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             R  +Q        V     Q  +    I A  + E SSKT QNV  +F
Sbjct: 120 QDRSLRQ--------VDFHDVQ--DFADEIKAQHF-ETSSKTGQNVDELF 158

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 93.3 bits (232), Expect = 9e-24
 Identities = 57/165 (34%), Positives = 85/165 (51%), Gaps = 16/165 (9%)

Query: 10  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV--VDGSTVNLGLWDTAGQEDY 67
           + +GD  VGK+ +L  +T   F     PTV  +F + ++    G  + L LWDTAGQE +
Sbjct: 6   IVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF 65

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPI-ILVGTKLDLRDD 125
             +    YR +   LL F + ++ S+E+V   W+ E R H  P  P+ ILVG K DL   
Sbjct: 66  RSITRSYYRNSVGVLLVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQ 124

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +Q          +T  + E+L K +G   YIE S++T  NV+  F
Sbjct: 125 RQ----------VTREEAEKLAKDLGMK-YIETSARTGDNVEEAF 158

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 90.7 bits (225), Expect = 3e-23
 Identities = 47/189 (24%), Positives = 91/189 (48%), Gaps = 20/189 (10%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + + S++FP  + PT+ D +     +D     L + DTAGQ
Sbjct: 1   REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDILDTAGQ 60

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDL 122
            ++  +R    R  + F++ +S+  + S++  +  K+ I  +R     +P++LVG K+DL
Sbjct: 61  AEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRL-TEDIPLVLVGNKVDL 119

Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182
              +Q          +TT +G  L +    P + E S+  +  +   F   ++ +     
Sbjct: 120 EQQRQ----------VTTEEGRNLAREFNCP-FFETSAALRFYIDDAFHGLVREI----- 163

Query: 183 NKKKKKRKA 191
            ++K+   A
Sbjct: 164 -RRKESMPA 171

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 90.2 bits (224), Expect = 4e-23
 Identities = 48/174 (27%), Positives = 70/174 (40%), Gaps = 21/174 (12%)

Query: 10  VTVGDGAVGKTCMLISYTSNTF---PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           V VG G VGK+ +L +               T  D       +D   V L L DT G ++
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTR-DPDVYVKELDKGKVKLVLVDTPGLDE 59

Query: 67  YNRLRP-----LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           +  L       L  RGAD+ LL      + S E+     +  LR    G+PIILVG K+D
Sbjct: 60  FGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLR--KEGIPIILVGNKID 117

Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
           L +++           +      E    I      E S+KT + V  +F+  I+
Sbjct: 118 LLEER----------EVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 89.2 bits (221), Expect = 1e-22
 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 14/172 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  ++F + +V TV  +F    V      + L +WDTAGQE 
Sbjct: 3   KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQER 62

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     +ILVG K D+ D+
Sbjct: 63  YRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177
           +           ++  +G +L   +G   + E S+K   NVK VF+  + ++
Sbjct: 122 RV----------VSAERGRQLADQLGFE-FFEASAKENINVKQVFERLVDII 162

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 87.0 bits (216), Expect = 7e-22
 Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 8/174 (4%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ V +GD  VGK+ +++S  S  FP + VP V    +    V    V   + DT+ +  
Sbjct: 3   VRIVLIGDEGVGKSSLIMSLVSEEFP-ENVPRVLPEITIPADVTPERVPTTIVDTSSRPQ 61

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
                    R A+V  L +S+   ++ E +  KW+P +R     VPIILVG K DLRD  
Sbjct: 62  DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS 121

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
                    +PI      E R++      +ECS+KT  NV  VF  A K VL P
Sbjct: 122 SQAGLEEEMLPIM----NEFREIE---TCVECSAKTLINVSEVFYYAQKAVLHP 168

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 87.8 bits (217), Expect = 9e-22
 Identities = 52/177 (29%), Positives = 94/177 (53%), Gaps = 16/177 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+ +L+S+ S++   D  PT+  +F    + V G  + L +WDTAGQE 
Sbjct: 16  KILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER 74

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRD 124
           +  L    YR A   +L + +  + ++ N++  W  E+  Y+     +  LVG K+D   
Sbjct: 75  FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA-AIKVVLQP 180
           ++           ++  +G  L K  G  +++ECS+KT++NV+  F+  A+K++  P
Sbjct: 135 ERD----------VSREEGMALAKEHGC-LFLECSAKTRENVEQCFEELALKIMEVP 180

Length = 211

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 86.1 bits (213), Expect = 2e-21
 Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 13/165 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   + VD     L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCMLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R L  +    F L +S+ ++ S+ ++   ++ I  ++     VP+ILVG K DL D+
Sbjct: 63  TAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTED-VPMILVGNKCDLEDE 121

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +           ++  +G+ L +  G   ++E S+K++ NV  +F
Sbjct: 122 RV----------VSKEEGQNLARQWGNCPFLETSAKSKINVDEIF 156

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 85.3 bits (211), Expect = 7e-21
 Identities = 53/193 (27%), Positives = 92/193 (47%), Gaps = 18/193 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+ +L+ +  NTF   Y+ T+  +F    V ++G  V L +WDTAGQE 
Sbjct: 8   KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQER 67

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +  +    YRG    ++ + + +  S+ NV K+W+ E+      V  +LVG K D  D +
Sbjct: 68  FRTITSTYYRGTHGVIVVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKND--DPE 124

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL-----QPP 181
           + + +   A       G  L          E S+K   NV+ +F+   ++VL        
Sbjct: 125 RKVVETEDAYKFAGQMGISL---------FETSAKENINVEEMFNCITELVLRAKKDNLA 175

Query: 182 KNKKKKKRKAQKA 194
           K +++++    K 
Sbjct: 176 KQQQQQQNDVVKL 188

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 84.1 bits (208), Expect = 1e-20
 Identities = 50/174 (28%), Positives = 88/174 (50%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V+G  + L +WDTAGQE 
Sbjct: 4   KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER 63

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   L+ + +  +++Y +++  W+ + R+   P   I L+G K DL   
Sbjct: 64  FRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +           +T  + ++     G  +++ECS+KT +NV+  F    K + Q
Sbjct: 123 RD----------VTYEEAKQFADENGL-LFLECSAKTGENVEDAFLETAKKIYQ 165

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 83.5 bits (207), Expect = 1e-20
 Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 20/179 (11%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED- 66
           K   +G   VGK+ + + + +  F  +Y P +   +S  V +DG  V+L + DT GQ+  
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSLEIQDTPGQQQN 60

Query: 67  ---YNRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLD 121
               +  R L  R AD F+L +S+  ++S++ V+   + I E++     +P+ILVG K D
Sbjct: 61  EDPESLERSL--RWADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKAD 118

Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS-SKTQQNVKAVFDAAIKVVLQ 179
           L   +Q          ++T +G++L   +G  ++ E S ++    V+ VF    + V +
Sbjct: 119 LLHSRQ----------VSTEEGQKLALELGC-LFFEVSAAENYLEVQNVFHELCREVRR 166

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 83.4 bits (206), Expect = 2e-20
 Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 13/166 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED 66
           K + VGD +VGKTC++  +  + F  +Y  T+  +F      V G   +L LWDTAGQE 
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPE-LRHYAPG-VPIILVGTKLDLRD 124
           +  +    YRGA   ++ F L   AS E+  ++W+ + L+   P  V + LVGTK DL  
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEH-TRQWLEDALKENDPSSVLLFLVGTKKDLSS 120

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             Q+      A+ +      E         Y   S+ T +NV+  F
Sbjct: 121 PAQYALMEQDAIKLAREMKAE---------YWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 83.0 bits (205), Expect = 2e-20
 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   V VDG    L + DTAG E +
Sbjct: 3   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQF 62

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R L  +    F+L +S+ +++++ ++   ++ I  ++     VP+ILVG K DL D+
Sbjct: 63  TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTE-DVPMILVGNKCDLEDE 121

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
           +           +   QG+ L +  G   ++E S+K + NV  +F   ++
Sbjct: 122 RV----------VGKEQGQNLARQWGC-AFLETSAKAKINVNEIFYDLVR 160

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 82.6 bits (204), Expect = 3e-20
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 14/165 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V +G+  VGKTC++  +T   FP     T+  +F    V + G  + L +WDTAGQE 
Sbjct: 9   KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 125
           +  +    YR A+  +L + +  + S+  +  +W+ E+  YA   V  ILVG K+DL + 
Sbjct: 69  FRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYANNKVITILVGNKIDLAER 127

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           ++          ++  + EE         Y+E S+K   NV+ +F
Sbjct: 128 RE----------VSQQRAEEFSD-AQDMYYLETSAKESDNVEKLF 161

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 81.8 bits (202), Expect = 5e-20
 Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 24/174 (13%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-----NVVVDGSTVNLGLWDT 61
           +K + +GD AVGK+ ++  +  +     Y P     ++      N   +G T+ +  WDT
Sbjct: 1   VKIILLGDSAVGKSKLVERFLMD----GYEPQQLSTYALTLYKHNAKFEGKTILVDFWDT 56

Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQE +  +    Y  A   +L F +  K +Y+N+  KW  ELR Y P +P I+V  K+D
Sbjct: 57  AGQERFQTMHASYYHKAHACILVFDVTRKITYKNL-SKWYEELREYRPEIPCIVVANKID 115

Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
           L              P  T +     +    P+Y   S+    NV  +F  AIK
Sbjct: 116 LD-------------PSVTQKKFNFAEKHNLPLYY-VSAADGTNVVKLFQDAIK 155

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 81.9 bits (202), Expect = 2e-19
 Identities = 48/136 (35%), Positives = 74/136 (54%), Gaps = 10/136 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+   + V+G TV   +WDTAGQE 
Sbjct: 14  KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR-- 123
           Y  +    YRGA   LL + +  + +++NV ++W+ ELR +A   + I++ G K DL   
Sbjct: 74  YRAITSAYYRGAVGALLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHL 132

Query: 124 -----DDKQFLADHPG 134
                +D Q LA+  G
Sbjct: 133 RSVAEEDGQALAEKEG 148

Length = 216

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 79.8 bits (197), Expect = 5e-19
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 5/127 (3%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAG 63
           R  K + +GD  VGKTC+   + +  FP     T+  +F    V +DG  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAG 60

Query: 64  QEDYNR-LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKL 120
           QE + + +    YR     +  + + + AS+ ++   WI E   ++    VP ILVG K 
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLP-SWIEECEQHSLPNEVPRILVGNKC 119

Query: 121 DLRDDKQ 127
           DLR+  Q
Sbjct: 120 DLREQIQ 126

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 78.7 bits (194), Expect = 1e-18
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)

Query: 8   KCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVV---VDGSTVNLGLWDTA 62
           +C  VGD AVGK+ ++  + S+  TF  +Y  T   +     V       +V L ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGV--PIILVGTKL 120
           GQE ++ +    +    V  + + + ++ S+ N + +WI  +R ++ G+  P +LVG K 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCS-RWINRVRTHSHGLHTPGVLVGNKC 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 171
           DL D ++          +  AQ + L +      Y E S+K     +A F 
Sbjct: 121 DLTDRRE----------VDAAQAQALAQANTLKFY-ETSAKEGVGYEAPFL 160

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 78.5 bits (194), Expect = 1e-18
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 14/127 (11%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-------DGSTVNLGLW 59
            K V VGDG  GKT  +  + +  F   YV T+       V V       +   +   +W
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL------GVEVHPLDFHTNRGKIRFNVW 54

Query: 60  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK 119
           DTAGQE +  LR   Y      ++ F + S+ +Y+NV   W  +L      +PI+L G K
Sbjct: 55  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNK 113

Query: 120 LDLRDDK 126
           +D++D K
Sbjct: 114 VDIKDRK 120

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 74.0 bits (182), Expect = 2e-17
 Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED 66
           K V +GD   GK+ +L       FP + +    D  + + + VDG T  L +WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKL 120
                 +  + AD  LL + L  + S   V+    W+P LR     +P+ILVG KL
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 75.5 bits (186), Expect = 5e-17
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + VGDG VGKT  +  + +  F   Y+PT+  +        +   +   +WDTAGQE
Sbjct: 10  FKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y      ++ F + S+ +Y+NV   W  ++      +PI+LVG K+D++D 
Sbjct: 70  KFGGLRDGYYIKGQCAIIMFDVTSRITYKNVP-NWHRDIVRVCENIPIVLVGNKVDVKDR 128

Query: 126 K 126
           +
Sbjct: 129 Q 129

Length = 215

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 74.3 bits (182), Expect = 1e-16
 Identities = 54/182 (29%), Positives = 88/182 (48%), Gaps = 18/182 (9%)

Query: 10  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYN 68
           + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE +N
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 69  RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQ 127
            +    YR A   +L + +  K +++++  KW+  +  YA     ++LVG KLD   D++
Sbjct: 64  SITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCETDRE 122

Query: 128 FLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF-----DAAIKVVLQPPK 182
                     IT  QGE+  + I    + E S+K   NV  +F     D   K+ L   +
Sbjct: 123 ----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLDILR 172

Query: 183 NK 184
           N+
Sbjct: 173 NE 174

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 73.2 bits (180), Expect = 3e-16
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 16/188 (8%)

Query: 8   KCVTVGDGAVGKTCM-LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           + V +GD  VGK+ +  I        + Y  +  D +   V VDG    L ++D   QED
Sbjct: 2   RVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQED 61

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTKLDLRD 124
              L     +  D +++ +S+  ++S+E  A +   +LR    A  +PIILVG K DL  
Sbjct: 62  GMWLEDSCMQVGDAYVIVYSVTDRSSFE-KASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV-LQPPKN 183
            ++          ++  +G     +     +IE S+  Q NV  +F+  ++ V L+    
Sbjct: 121 SRE----------VSVQEGRACAVVFDCK-FIETSAALQHNVDELFEGIVRQVRLRRDSK 169

Query: 184 KKKKKRKA 191
           +K  +R A
Sbjct: 170 EKNTRRMA 177

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 72.0 bits (177), Expect = 5e-16
 Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 14/174 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           +K   +GD  +GKT +++ Y    F  +Y+ T+  NF    + + G+ +   +WD  GQ 
Sbjct: 1   LKIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           ++  + PL  + A   L  F L  K++  ++ K+W  + R +      ILVGTK DL   
Sbjct: 61  EFINMLPLVCKDAVAILFMFDLTRKSTLNSI-KEWYRQARGFNKTAIPILVGTKYDL--- 116

Query: 126 KQFLADHPGAVPIT-TAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
               AD P       T Q  +  K + AP+ I CS+    NV+ +F    K VL
Sbjct: 117 ---FADLPPEEQEEITKQARKYAKAMKAPL-IFCSTSHSINVQKIF----KFVL 162

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 70.3 bits (172), Expect = 2e-15
 Identities = 41/128 (32%), Positives = 68/128 (53%), Gaps = 2/128 (1%)

Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ 64
            +K + VGD  VGK  +L S    +  + Y   +  D  +  +++DG  V L LWDT+GQ
Sbjct: 6   LLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQ 65

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124
             +  +     RGA   +L + + ++ S++ +  +WI E+  +APGVP ILVG +L L  
Sbjct: 66  GRFCTIFRSYSRGAQGIILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAF 124

Query: 125 DKQFLADH 132
            +Q   + 
Sbjct: 125 KRQVATEQ 132

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 70.6 bits (173), Expect = 3e-15
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 10/125 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----FDNFSANVVVDGSTVNLGLWDT 61
            K V VGDG  GKT  +  + +  F   Y PT+       +F  N       +    WDT
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC----GKIRFYCWDT 69

Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQE +  LR   Y      ++ F + ++ +Y+NV   W  +L      +PI+L G K+D
Sbjct: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVD 128

Query: 122 LRDDK 126
           +++ +
Sbjct: 129 VKNRQ 133

Length = 219

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 17/178 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQE 65
           K + +GD  VGKT ++  Y    F   Y  T+  +F+  V+     + V L LWD AGQE
Sbjct: 2   KVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQE 61

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR---HYAPG--VPIILVGTKL 120
            +  +  + Y+GA   ++ F +   +++E V  KW  +L        G  +P +L+  K 
Sbjct: 62  RFGGMTRVYYKGAVGAIIVFDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           DL+ ++               Q ++  K  G   + E S+K   N++      +K +L
Sbjct: 121 DLKKERLAKDPE---------QMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNIL 169

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 67.6 bits (165), Expect = 3e-14
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 13/165 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           + V +G   VGKT ++  +  +TF   +  TV +  S    V G  V + + DT+G   +
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDILDTSGSYSF 60

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R LS +  D F L +S+    S+E V   ++ I E++     VPI++VG K+D   +
Sbjct: 61  PAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDK-FVPIVVVGNKIDSLAE 119

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +Q  A              EL    G   ++E S+K  +NV  VF
Sbjct: 120 RQVEAA-------DALSTVELDWNNG---FVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 66.0 bits (161), Expect = 7e-14
 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 14/166 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           + V  G G VGK+ +++ +   TF   Y+PT+ D +   +    S   L + DT G   +
Sbjct: 3   RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKSICTLQITDTTGSHQF 62

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKW--IPELR-HYAPGVPIILVGTKLDLRD 124
             ++ LS      F+L +S+ SK S E +   +  I E++ +    +PI+LVG K D   
Sbjct: 63  PAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDESP 122

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            ++          +++++G  L +      ++E S+KT  NV+ +F
Sbjct: 123 SRE----------VSSSEGAALARTWNC-AFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 66.9 bits (163), Expect = 8e-14
 Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 26/212 (12%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K V +GD  VGKT +L  Y    F  D V TV   F    +      N+ +WDTAG+E 
Sbjct: 1   LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAF---YLKQWGPYNISIWDTAGREQ 56

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           ++ L  +  RGA   +L + + +  S E +  +++             +VG KLDL ++ 
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 127 QFLADHPGAVPITT-------------AQGEELRKLIGAP---------VYIECSSKTQQ 164
                   A    +             A  + + K              +  E S+KT  
Sbjct: 117 ALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY 176

Query: 165 NVKAVFDAAIKVVLQPPKNKKKKKRKAQKACS 196
           NV  +F+    +VL     ++ +  + Q   +
Sbjct: 177 NVDELFEYLFNLVLPLILAQRAEANRTQGTVN 208

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 55/221 (24%), Positives = 85/221 (38%), Gaps = 46/221 (20%)

Query: 10  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR 69
           V +G   VGKT ++  +    F   Y PT+ D       + G    L + DT+G   +  
Sbjct: 4   VVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA 63

Query: 70  LRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYA-------PGVPIILVGTKL 120
           +R LS    DVF+L FSL ++ S+E V   ++ I E +            +P+++ G K 
Sbjct: 64  MRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKA 123

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAP---VYIECSSKTQQNVKAVFDAAIKV- 176
           D         D P  V     Q +E+ +L+G      Y E S+K   N+  +F A   + 
Sbjct: 124 DR--------DFPREV-----QRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170

Query: 177 --------------------VLQPPKNKKKKKRKAQKACSI 197
                                L        +KRK   AC  
Sbjct: 171 KLPNEMSPSLHRKISVQYGDALHKKSRGGSRKRKEGDACGA 211

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 63.1 bits (154), Expect = 8e-13
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANVVVDGSTVNLGLWDTAG 63
            K + VG G VGKT +        F  D   T      ++      +   + L +WD  G
Sbjct: 2   AKLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWK-IPAPERKKIRLNVWDFGG 60

Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123
           QE Y+           ++LL F L +      V   W+ +++ +    P+ILVGT +D  
Sbjct: 61  QEIYHATHQFFLTSRSLYLLVFDLRTGDEVSRV-PYWLRQIKAFGGVSPVILVGTHIDES 119

Query: 124 DDKQFL 129
            D+  L
Sbjct: 120 CDEDIL 125

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 63.5 bits (154), Expect = 1e-12
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL 70
           VGDG  GKT  +  + +  F   YV T+  +        +   +   +WDTAGQE +  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 71  RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           R   Y      ++ F + ++ +Y+NV   W  +L      +PI+L G K+D++D K
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKDRK 115

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 19/173 (10%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK +++G+  VGK+C++  Y    F + Y+PT+  D     V V    V +  +D +G  
Sbjct: 1   IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG------VPIILVGTK 119
           +Y  +R   Y+     LL + +  + S+E +   W+ E++           + +++   K
Sbjct: 61  EYLEVRNEFYKDTQGVLLVYDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANK 119

Query: 120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
           +DL   +           ++  +G    +  G   Y E S+ T + V  +F  
Sbjct: 120 IDLTKHRA----------VSEDEGRLWAESKGF-KYFETSACTGEGVNEMFQT 161

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 59.8 bits (144), Expect = 2e-11
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 14/144 (9%)

Query: 29  NTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL 87
           +TF  +Y  T+  D  S  + +D   V L LWDTAGQE +  L P   R +   ++ + +
Sbjct: 3   DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDI 62

Query: 88  ISKASYENVAKKWIPE-LRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL 146
            ++ S+EN   KWI + L      V I LVG K DL D ++          +T  +G + 
Sbjct: 63  TNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDLGDLRK----------VTYEEGMQK 111

Query: 147 RKLIGAPVYIECSSKTQQNVKAVF 170
            +     ++ E S+K   N+K +F
Sbjct: 112 AQEYNT-MFHETSAKAGHNIKVLF 134

Length = 176

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 56.0 bits (135), Expect = 8e-10
 Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 7/131 (5%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNLGLWDTAGQ 64
           IK V +GDGA GKT ++  +    F   Y  T+  D FS  + + GS  V L +WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG----VPIILVGTKL 120
           +   ++      GA    L + + +  S+EN+ + W+  ++           ++LVG K 
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENL-EDWLSVVKKVNEESETKPKMVLVGNKT 119

Query: 121 DLRDDKQFLAD 131
           DL  ++Q  A+
Sbjct: 120 DLEHNRQVTAE 130

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 47.2 bits (112), Expect = 9e-07
 Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 24/180 (13%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWD---------T 61
           +G   VGKT ++  + +  FP +Y+PT     +   VV+ G   +L + D         T
Sbjct: 6   LGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGT 65

Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHY-APGVPIILVGT 118
           AGQE +   R    R +  F+L + + S  S+  V   ++ I E R       PI++VG 
Sbjct: 66  AGQE-WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGN 124

Query: 119 KLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           K D +  + F   H  +V         L +      Y+ECS+K   ++  +F   +    
Sbjct: 125 KRDQQRHR-FAPRHVLSV---------LVRKSWKCGYLECSAKYNWHILLLFKELLISAT 174

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 45/172 (26%), Positives = 73/172 (42%), Gaps = 26/172 (15%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
           VG+   GK+ ++  Y + ++     P     F   V+VDG +  L + D  G  D     
Sbjct: 6   VGNLRSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD----- 59

Query: 72  PLSYRG-ADVFLLAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLDLRDDKQF 128
              + G  D  +  FSL  +AS++ V  +   +L  Y     +P+ILVGT+         
Sbjct: 60  -AQFAGWVDAVIFVFSLEDEASFQTV-YRLYHQLSSYRNISEIPLILVGTQ--------- 108

Query: 129 LADH-PGAVP--ITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF-DAAIKV 176
             D    + P  I  A+  +L   +    Y E  +    NV+ VF +AA K+
Sbjct: 109 --DAISASNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 12/116 (10%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
           VG    GKT ++    S  F  D +PTV   F+   V  G+ V + +WD  GQ    R R
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTV--GFNMRKVTKGN-VTIKVWDLGGQP---RFR 58

Query: 72  PL--SY-RGADVFLLAFSLISKASYENVAKKWIPEL--RHYAPGVPIILVGTKLDL 122
            +   Y RG +  +       +   E VAK  + +L  +    G+P++++G K DL
Sbjct: 59  SMWERYCRGVNAIVYVVDAADREKLE-VAKNELHDLLEKPSLEGIPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
KOG0395	196	consensus Ras-related GTPase [General function pre	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.98
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.98
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.98
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.97
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.97
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.97
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.97
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.96
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.96
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.96
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.96
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.96
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.96
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.96
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.95
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
PTZ00099	176	rab6; Provisional	99.95
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.94
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.94
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.93
COG1100	219	GTPase SAR1 and related small G proteins [General	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.93
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.93
PRK15494	339	era GTPase Era; Provisional	99.93
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
PRK12299	335	obgE GTPase CgtA; Reviewed	99.92
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.92
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.92
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.92
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.92
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.92
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.92
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.91
PRK04213	201	GTP-binding protein; Provisional	99.91
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.9
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.9
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
cd00881	189	GTP_translation_factor GTP translation factor fami	99.9
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.9
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.9
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.9
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.9
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.9
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.89
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.89
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
PRK00089	292	era GTPase Era; Reviewed	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.89
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.88
CHL00189	742	infB translation initiation factor 2; Provisional	99.88
COG1159	298	Era GTPase [General function prediction only]	99.88
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.88
PRK12297	424	obgE GTPase CgtA; Reviewed	99.88
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.88
PRK12296	500	obgE GTPase CgtA; Reviewed	99.87
PRK05306	787	infB translation initiation factor IF-2; Validated	99.87
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.87
PRK11058	426	GTPase HflX; Provisional	99.87
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.86
PRK05433	600	GTP-binding protein LepA; Provisional	99.86
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
PRK12298	390	obgE GTPase CgtA; Reviewed	99.86
KOG1673	205	consensus Ras GTPases [General function prediction	99.86
COG1160	444	Predicted GTPases [General function prediction onl	99.85
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.85
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.85
PRK12317	425	elongation factor 1-alpha; Reviewed	99.85
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.85
COG2229	187	Predicted GTPase [General function prediction only	99.85
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.85
COG1160	444	Predicted GTPases [General function prediction onl	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.85
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.84
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.83
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.83
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.83
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.83
COG0486	454	ThdF Predicted GTPase [General function prediction	99.82
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.82
PRK10218	607	GTP-binding protein; Provisional	99.82
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.81
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.81
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.81
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.81
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.81
PRK04004	586	translation initiation factor IF-2; Validated	99.81
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.81
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.8
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.8
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.8
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.8
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.79
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.79
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.77
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.77
PRK12736	394	elongation factor Tu; Reviewed	99.77
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.76
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.76
PRK12735	396	elongation factor Tu; Reviewed	99.75
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.75
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.75
CHL00071	409	tufA elongation factor Tu	99.74
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.74
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.73
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.73
COG0218	200	Predicted GTPase [General function prediction only	99.73
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.72
COG1163	365	DRG Predicted GTPase [General function prediction	99.7
PRK00049	396	elongation factor Tu; Reviewed	99.7
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.7
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.7
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.7
PRK13351	687	elongation factor G; Reviewed	99.69
PLN03127	447	Elongation factor Tu; Provisional	99.69
PLN00043	447	elongation factor 1-alpha; Provisional	99.68
PLN03126	478	Elongation factor Tu; Provisional	99.68
COG3596	296	Predicted GTPase [General function prediction only	99.68
PTZ00141	446	elongation factor 1- alpha; Provisional	99.68
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.67
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.67
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.67
COG2262	411	HflX GTPases [General function prediction only]	99.67
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.67
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.66
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.66
COG0536	369	Obg Predicted GTPase [General function prediction	99.64
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.64
COG1084	346	Predicted GTPase [General function prediction only	99.64
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.64
KOG1145	683	consensus Mitochondrial translation initiation fac	99.63
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.63
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.62
PRK09866	741	hypothetical protein; Provisional	99.62
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.61
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.6
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.6
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.6
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.58
PRK12739	691	elongation factor G; Reviewed	99.58
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.58
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.56
PRK14845	1049	translation initiation factor IF-2; Provisional	99.56
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.56
PRK00007	693	elongation factor G; Reviewed	99.56
PRK12740	668	elongation factor G; Reviewed	99.55
PRK09602	396	translation-associated GTPase; Reviewed	99.55
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.53
KOG0090	238	consensus Signal recognition particle receptor, be	99.52
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.52
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.5
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.5
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.49
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.49
PRK13768	253	GTPase; Provisional	99.48
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.46
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.45
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.45
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.45
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.44
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.43
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.42
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.41
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.4
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.39
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.39
PRK07560	731	elongation factor EF-2; Reviewed	99.38
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.38
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.38
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.36
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.35
PTZ00416	836	elongation factor 2; Provisional	99.34
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.34
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.34
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.33
PTZ00258	390	GTP-binding protein; Provisional	99.31
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.29
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.29
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.28
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.25
PRK09601	364	GTP-binding protein YchF; Reviewed	99.24
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.24
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.23
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.21
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.18
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.17
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.16
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.16
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.13
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.11
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.11
KOG1143	591	consensus Predicted translation elongation factor	99.1
PRK00098	298	GTPase RsgA; Reviewed	99.1
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.07
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.06
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.06
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.05
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.05
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.03
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.03
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.02
KOG2486	320	consensus Predicted GTPase [General function predi	99.02
PRK12289	352	GTPase RsgA; Reviewed	99.01
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.0
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.94
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.92
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.91
PRK12288	347	GTPase RsgA; Reviewed	98.91
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.9
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.87
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.86
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.82
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.81
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	98.81
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.8
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.79
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.78
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.76
KOG0410	410	consensus Predicted GTP binding protein [General f	98.67
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.66
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.65
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.65
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.63
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.6
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.6
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.57
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.55
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.55
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.54
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.52
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.5
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.5
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.48
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.47
KOG0460	449	consensus Mitochondrial translation elongation fac	98.46
PRK13796	365	GTPase YqeH; Provisional	98.45
PRK01889	356	GTPase RsgA; Reviewed	98.42
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.42
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.42
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.42
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.4
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.39
COG1161	322	Predicted GTPases [General function prediction onl	98.38
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.37
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.32
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.32
PRK12288	347	GTPase RsgA; Reviewed	98.32
cd03112	158	CobW_like The function of this protein family is u	98.31
PRK14974	336	cell division protein FtsY; Provisional	98.31
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.29
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.28
PRK10416	318	signal recognition particle-docking protein FtsY;	98.26
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.25
COG1162	301	Predicted GTPases [General function prediction onl	98.23
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.22
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.22
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.19
PRK12289	352	GTPase RsgA; Reviewed	98.14
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.13
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.12
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.11
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.08
COG1162	301	Predicted GTPases [General function prediction onl	98.07
PRK13695	174	putative NTPase; Provisional	98.01
PRK13796	365	GTPase YqeH; Provisional	97.99
PRK00098	298	GTPase RsgA; Reviewed	97.97
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.95
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.95
KOG1533	290	consensus Predicted GTPase [General function predi	97.94
KOG0464	753	consensus Elongation factor G [Translation, riboso	97.91
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.89
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.87
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.86
KOG4273	418	consensus Uncharacterized conserved protein [Funct	97.85
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	97.82
KOG3929	363	consensus Uncharacterized conserved protein [Funct	97.79
PRK10867	433	signal recognition particle protein; Provisional	97.78
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.77
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.72
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.71
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.71
cd03114	148	ArgK-like The function of this protein family is u	97.7
COG3523	1188	IcmF Type VI protein secretion system component Va	97.7
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.65
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.56
PRK08118	167	topology modulation protein; Reviewed	97.56
TIGR00959	428	ffh signal recognition particle protein. This mode	97.54
COG0523	323	Putative GTPases (G3E family) [General function pr	97.54
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.54
KOG2484	435	consensus GTPase [General function prediction only	97.5
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.49
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.48
PRK07261	171	topology modulation protein; Provisional	97.48
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.46
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.45
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.44
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.42
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.42
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.42
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.41
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.35
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.33
PRK05480	209	uridine/cytidine kinase; Provisional	97.32
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.31
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.31
PRK14737	186	gmk guanylate kinase; Provisional	97.27
PRK14738	206	gmk guanylate kinase; Provisional	97.24
PRK14530	215	adenylate kinase; Provisional	97.22
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.22
PTZ00088	229	adenylate kinase 1; Provisional	97.21
PRK14527	191	adenylate kinase; Provisional	97.21
PRK06217	183	hypothetical protein; Validated	97.21
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.2
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.2
PF00004	132	AAA: ATPase family associated with various cellula	97.18
smart00382	148	AAA ATPases associated with a variety of cellular	97.17
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.16
PRK03839	180	putative kinase; Provisional	97.16
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.15
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.14
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.14
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.14
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.13
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.13
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.12
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.1
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.09
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.08
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.08
cd03110	179	Fer4_NifH_child This protein family's function is	97.07
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.06
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.05
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.05
COG1161	322	Predicted GTPases [General function prediction onl	97.04
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.04
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.03
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.03
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.02
PRK13949	169	shikimate kinase; Provisional	97.02
PRK14532	188	adenylate kinase; Provisional	97.02
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.0
PRK00625	173	shikimate kinase; Provisional	96.99
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.97
PRK01889	356	GTPase RsgA; Reviewed	96.96
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.93
PLN02674	244	adenylate kinase	96.93
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.91
PRK05057	172	aroK shikimate kinase I; Reviewed	96.91
PRK00300	205	gmk guanylate kinase; Provisional	96.9
PRK08233	182	hypothetical protein; Provisional	96.89
PRK14531	183	adenylate kinase; Provisional	96.89
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.88
PRK04195	482	replication factor C large subunit; Provisional	96.87
cd03111	106	CpaE_like This protein family consists of proteins	96.87
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.87
PHA00729	226	NTP-binding motif containing protein	96.86
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.86
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.85
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	96.85
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.85
PRK02496	184	adk adenylate kinase; Provisional	96.85
PLN02200	234	adenylate kinase family protein	96.84
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.83
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	96.83
KOG2423	572	consensus Nucleolar GTPase [General function predi	96.82
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.81
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	96.8
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.8
PF13173	128	AAA_14: AAA domain	96.8
PRK06547	172	hypothetical protein; Provisional	96.79
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.78
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	96.76
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.75
PRK05541	176	adenylylsulfate kinase; Provisional	96.74

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.3e-41  Score=227.19  Aligned_cols=171  Identities=32%  Similarity=0.632  Sum_probs=156.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      ....+||+++|..++|||||+.||..+.|.+...+|++..| ...+.+++..+.+.||||+||++|.++.++++++++++
T Consensus         2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA   81 (200)
T KOG0092|consen    2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA   81 (200)
T ss_pred             CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence            35679999999999999999999999999998889996554 67788888899999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      |+|||+++.+||..+ +.|+..++... +++-+.+||||+|+.+.+.          +..++++.++...+. .|+|+||
T Consensus        82 ivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~----------V~~~ea~~yAe~~gl-l~~ETSA  149 (200)
T KOG0092|consen   82 IVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERRE----------VEFEEAQAYAESQGL-LFFETSA  149 (200)
T ss_pred             EEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhccc----------ccHHHHHHHHHhcCC-EEEEEec
Confidence            999999999999999 99999999988 5777888999999988655          999999999999998 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCcchH
Q 029144          161 KTQQNVKAVFDAAIKVVLQPPKNKK  185 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~~~~~  185 (198)
                      +++.|++++|..|.+.+.....+..
T Consensus       150 KTg~Nv~~if~~Ia~~lp~~~~~~~  174 (200)
T KOG0092|consen  150 KTGENVNEIFQAIAEKLPCSDPQER  174 (200)
T ss_pred             ccccCHHHHHHHHHHhccCcccccc
Confidence            9999999999999999988766643

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.8e-40  Score=225.67  Aligned_cols=167  Identities=35%  Similarity=0.704  Sum_probs=155.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ++-|||+++|.+|+|||+|+.||..+.+.+.|..|++..+ .+.+.++++.+.++||||+||++|++....++++++++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            3678999999999999999999999999999999997666 677889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||+++.+||..+ ..|+..+.++. ++.|.++||||+|+.+...          ++.++++.++..++.+.|+|+||+
T Consensus        87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~----------v~~~~a~~fa~~~~~~~f~ETSAK  155 (205)
T KOG0084|consen   87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRV----------VSTEEAQEFADELGIPIFLETSAK  155 (205)
T ss_pred             EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhhee----------cCHHHHHHHHHhcCCcceeecccC
Confidence            99999999999999 99999999988 6789999999999988776          999999999999999559999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 029144          162 TQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ++.|+++.|..+...+....
T Consensus       156 ~~~NVe~~F~~la~~lk~~~  175 (205)
T KOG0084|consen  156 DSTNVEDAFLTLAKELKQRK  175 (205)
T ss_pred             CccCHHHHHHHHHHHHHHhc
Confidence            99999999999999885543

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=3.3e-39  Score=230.33  Aligned_cols=188  Identities=57%  Similarity=0.974  Sum_probs=156.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      ..+||+++|..|+|||||+.++..+.+.+.+.||.+..+...+.+++..+.+.+|||+|+++|..++..+++++|++|+|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            45899999999999999999999999999999999877776677888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ||++++.+|+.+...|...+....++.|+++|+||+|+.+.....  ........+..++++.+++..+..+|+++||++
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~  161 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN  161 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence            999999999999557888777766789999999999996542100  011122346778899999998855899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCcchHHhhccccCCcccC
Q 029144          163 QQNVKAVFDAAIKVVLQPPKNKKKKKRKAQKACSIL  198 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~c~~~  198 (198)
                      |.|++++|.++++.+..+...+      ++.+|.+|
T Consensus       162 g~~v~e~f~~l~~~~~~~~~~~------~~~~c~~~  191 (191)
T cd01875         162 QDGVKEVFAEAVRAVLNPTPIK------DTKSCVLL  191 (191)
T ss_pred             CCCHHHHHHHHHHHHhcccccc------CCCCceeC
Confidence            9999999999999887653211      22359886

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.8e-38  Score=223.08  Aligned_cols=174  Identities=91%  Similarity=1.399  Sum_probs=152.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|.+|+|||||+.++..+.+...+.+|.+..+...+.+++..+.+++|||+|+++|..++..++++++++|+|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            79999999999999999999999999999999988777777888999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCH
Q 029144           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNV  166 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (198)
                      ++++.+|+.+...|+..+....++.|+++||||+|+.+...........+.++.+++..+++..+..+|+||||++|.||
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV  161 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNV  161 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCH
Confidence            99999999985689988887777899999999999965431111223334578889999999998757999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 029144          167 KAVFDAAIKVVLQP  180 (198)
Q Consensus       167 ~~~~~~i~~~~~~~  180 (198)
                      +++|..+++.+..+
T Consensus       162 ~~~F~~~~~~~~~~  175 (176)
T cd04133         162 KAVFDAAIKVVLQP  175 (176)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999987543

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=9.1e-39  Score=232.47  Aligned_cols=176  Identities=38%  Similarity=0.680  Sum_probs=152.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      ..+||+++|..|||||||+.+|..+.+...+.||.+..+...+.+++..+.+.+|||+|++.|..++..+++++|++++|
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV   91 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC   91 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence            46899999999999999999999999999999999877777788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc--CCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ||++++.+|+.+...|+..+....++.|+++|+||+|+.+......  .....+.++.++++++++..++..|+||||++
T Consensus        92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt  171 (232)
T cd04174          92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT  171 (232)
T ss_pred             EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            9999999999865789999988778899999999999964311000  01112458889999999999986799999999


Q ss_pred             CC-CHHHHHHHHHHHHcCC
Q 029144          163 QQ-NVKAVFDAAIKVVLQP  180 (198)
Q Consensus       163 ~~-~i~~~~~~i~~~~~~~  180 (198)
                      |. |++++|..++..+.+.
T Consensus       172 g~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         172 SEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CCcCHHHHHHHHHHHHHHh
Confidence            98 8999999999887553

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=2.2e-38  Score=225.63  Aligned_cols=186  Identities=49%  Similarity=0.869  Sum_probs=162.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|.+|+|||||++++.++.+.+.+.++....+...+... +..+.+.+||+||+++|..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999999998888888877776666665 67789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN  165 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (198)
                      |++++.+++.+...|+..+....++.|+++|+||+|+.+..      .....+..+++++++...+..+++++||++|.|
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  154 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDK------NLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN  154 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCc------cccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence            99999999998667888777666789999999999996542      112236678888999998876799999999999


Q ss_pred             HHHHHHHHHHHHcCCCcchHHhhccccCCcccC
Q 029144          166 VKAVFDAAIKVVLQPPKNKKKKKRKAQKACSIL  198 (198)
Q Consensus       166 i~~~~~~i~~~~~~~~~~~~~~~~~~~~~c~~~  198 (198)
                      ++++|..+++.+.....+.++.+++++++|++|
T Consensus       155 v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~  187 (187)
T cd04132         155 VEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL  187 (187)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence            999999999999998888888889999999987

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=4.5e-38  Score=222.26  Aligned_cols=177  Identities=37%  Similarity=0.709  Sum_probs=153.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +...+||+++|.+|+|||||++++..+.+.+.+.||.+..+...+.+++..+.+.+|||+|++.|..++..+++++|+++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            34578999999999999999999999999999999998877777888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      +|||++++.+|+.+...|...+....++.|+++|+||+|+.+.....  ......+.++.+++++++++.++.+|+||||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  161 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  161 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            99999999999997678999998888899999999999996531100  0011223588899999999999658999999


Q ss_pred             CCCCC-HHHHHHHHHHHHcC
Q 029144          161 KTQQN-VKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~~~~~-i~~~~~~i~~~~~~  179 (198)
                      ++|.| ++++|..+++.++.
T Consensus       162 k~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         162 LQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHhc
Confidence            99998 99999999987543

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-38  Score=216.69  Aligned_cols=166  Identities=34%  Similarity=0.564  Sum_probs=152.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      +.+|++++|..++||||||.+|+.+.+..+|.+|++-.| ...+.+.+..+.|++|||+||++|+++.+.++++++++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            568999999999999999999999999999999997555 7788899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-C-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-P-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||+++..||+.. ..|++.+.... . +.-+++|+||.||.+.++          +..+++...+++++. .|+++||+
T Consensus       101 VyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrq----------vs~eEg~~kAkel~a-~f~etsak  168 (221)
T KOG0094|consen  101 VYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQ----------VSIEEGERKAKELNA-EFIETSAK  168 (221)
T ss_pred             EEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhh----------hhHHHHHHHHHHhCc-EEEEeccc
Confidence            9999999999999 88888888766 3 477789999999988776          999999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCc
Q 029144          162 TQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      .|+||+.+|..|..++.....
T Consensus       169 ~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  169 AGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             CCCCHHHHHHHHHHhccCccc
Confidence            999999999999988876543

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=4.1e-38  Score=223.53  Aligned_cols=182  Identities=28%  Similarity=0.510  Sum_probs=154.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +..+||+++|..|+|||||+.+|..+.+..++.++.+..+ ...+.+++..+.+++||++|+++|..++..+++++|++|
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            4578999999999999999999999988888877775544 455677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      +|||++++.+|+.+ ..|+..+....++.|+++|+||+|+.....          ++.++++.+++..++ +|+++||++
T Consensus        84 lVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~----------v~~~~~~~~a~~~~~-~~~e~SAk~  151 (189)
T cd04121          84 LVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQ----------VATEQAQAYAERNGM-TFFEVSPLC  151 (189)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccC----------CCHHHHHHHHHHcCC-EEEEecCCC
Confidence            99999999999999 889999988778999999999999976543          788999999999988 799999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCcch--HHhhccccCCccc
Q 029144          163 QQNVKAVFDAAIKVVLQPPKNK--KKKKRKAQKACSI  197 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~~~~--~~~~~~~~~~c~~  197 (198)
                      |.|++++|.++++.+.......  ++.++=.++.|-|
T Consensus       152 g~~V~~~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  188 (189)
T cd04121         152 NFNITESFTELARIVLMRHGRPPQSPPQNCSRNSCKI  188 (189)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCCCCccccCCcccc
Confidence            9999999999999886544322  2233334455543

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.2e-37  Score=219.62  Aligned_cols=173  Identities=37%  Similarity=0.718  Sum_probs=150.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      .+||+++|.+|+|||||++++..+.++..+.||.+..+...+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            37999999999999999999999999999999998777777888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |++++++|+.+...|...+....++.|+++|+||+|+.++....  ......+.++.++++++++..++.+|+|+||++|
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~  160 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS  160 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence            99999999996578999998888899999999999996521100  0001123588899999999999767999999999


Q ss_pred             CC-HHHHHHHHHHHHc
Q 029144          164 QN-VKAVFDAAIKVVL  178 (198)
Q Consensus       164 ~~-i~~~~~~i~~~~~  178 (198)
                      ++ ++++|..+++..+
T Consensus       161 ~~~v~~~F~~~~~~~~  176 (178)
T cd04131         161 EKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            95 9999999999654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.1e-37  Score=225.78  Aligned_cols=174  Identities=37%  Similarity=0.729  Sum_probs=151.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+|+|.+|+|||||+.+|..+.+++.|.||....+...+.+++..+.+.+||++|++.|..++..+++++|++++|||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd   81 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD   81 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence            79999999999999999999999999999999988887778889999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc--CCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      ++++++|+.+...|...+....++.|+++|+||+|+.++.....  ......+++.+++..+++..++.+|+||||+++.
T Consensus        82 is~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~  161 (222)
T cd04173          82 ISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSE  161 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence            99999999997788888877778999999999999975421110  1112335788899999999997689999999988


Q ss_pred             C-HHHHHHHHHHHHcCC
Q 029144          165 N-VKAVFDAAIKVVLQP  180 (198)
Q Consensus       165 ~-i~~~~~~i~~~~~~~  180 (198)
                      + ++++|..++...+.+
T Consensus       162 ~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         162 RSVRDVFHVATVASLGR  178 (222)
T ss_pred             cCHHHHHHHHHHHHHhc
Confidence            5 999999999977653

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=3.7e-37  Score=219.57  Aligned_cols=187  Identities=42%  Similarity=0.708  Sum_probs=155.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      .||+++|.+|+|||||+++|..+.+...+.+|....+...+.+++..+.+.+||++|++.|..++..++++++++++|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            38999999999999999999999998888899877777677778888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      ++++.+|+.+...|+..+....++.|+++|+||+|+.+.....  ........+..+++..++...+..+|+++||++|.
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  160 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR  160 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence            9999999988557888888777899999999999997643211  00111223566778888888775579999999999


Q ss_pred             CHHHHHHHHHHHHcCCCcchHHhhccccCCcccC
Q 029144          165 NVKAVFDAAIKVVLQPPKNKKKKKRKAQKACSIL  198 (198)
Q Consensus       165 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~c~~~  198 (198)
                      |++++|.++++.+.....     ..+....|+||
T Consensus       161 ~v~e~f~~l~~~~~~~~~-----~~~~~~~~~~~  189 (189)
T cd04134         161 GVNEAFTEAARVALNVRP-----PHPHSSACTIA  189 (189)
T ss_pred             CHHHHHHHHHHHHhcccc-----cCcCCCcceeC
Confidence            999999999998875443     34455668876

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=1.1e-37  Score=222.38  Aligned_cols=179  Identities=36%  Similarity=0.623  Sum_probs=153.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   87 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (198)
                      ||+++|.+|+|||||+++|..+.+...+.+|.+..+.....+++..+.+++||+||+++|..++..+++++|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            68999999999999999999999988888988877777777888888999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           88 ISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      +++.+++.+ ..|+..+....    ++.|+++|+||+|+.+...          ++.+++..++..++. +|+++||++|
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~~  148 (190)
T cd04144          81 TSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYERE----------VSTEEGAALARRLGC-EFIEASAKTN  148 (190)
T ss_pred             CCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence            999999998 67777665432    4789999999999976443          677778888888887 7999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCcch-------HHhhccccCCcccC
Q 029144          164 QNVKAVFDAAIKVVLQPPKNK-------KKKKRKAQKACSIL  198 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~c~~~  198 (198)
                      .|++++|.++++.+...+...       ...+++++++|.+|
T Consensus       149 ~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (190)
T cd04144         149 VNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM  190 (190)
T ss_pred             CCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence            999999999999886544443       33556677788876

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-37  Score=215.25  Aligned_cols=169  Identities=33%  Similarity=0.621  Sum_probs=155.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      .+..+||+++|.++||||+|+.+|..+.+...+..|.+-. ....+.+++..+.+++|||+||++|....+.+++.|+++
T Consensus         9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi   88 (207)
T KOG0078|consen    9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI   88 (207)
T ss_pred             cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence            3568999999999999999999999999999999999654 477888999999999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++|||+++..||+.+ ..|+..+..+. ++.|.++||||+|+...+.          ++.+.++.+|.++|. .|+|+||
T Consensus        89 ~LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~----------V~~e~ge~lA~e~G~-~F~EtSA  156 (207)
T KOG0078|consen   89 LLVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQ----------VSKERGEALAREYGI-KFFETSA  156 (207)
T ss_pred             EEEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeecccccccccc----------ccHHHHHHHHHHhCC-eEEEccc
Confidence            999999999999999 66999999998 5999999999999977654          999999999999999 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCcc
Q 029144          161 KTQQNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~~~  183 (198)
                      ++|.||++.|..+++.+..+...
T Consensus       157 k~~~NI~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  157 KTNFNIEEAFLSLARDILQKLED  179 (207)
T ss_pred             cCCCCHHHHHHHHHHHHHhhcch
Confidence            99999999999999998754443

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=7.9e-37  Score=215.20  Aligned_cols=172  Identities=56%  Similarity=0.984  Sum_probs=148.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      .+||+++|.+|+|||||+.++..+.+.+.+.||.+..+...+.+++..+.+.+||++|+++|..++..+++++|++++||
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            37999999999999999999999999889999998877766778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |++++++++.+...|...+....++.|+++|+||+|+.+.....  ......+.+..+++++++++.+...|+++||++|
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg  160 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence            99999999998557988888777789999999999996542211  1112234578889999999887558999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029144          164 QNVKAVFDAAIKVV  177 (198)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (198)
                      .|++++|+.+++.+
T Consensus       161 ~~v~~~f~~~~~~~  174 (175)
T cd01874         161 KGLKNVFDEAILAA  174 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999865

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=1.1e-36  Score=217.18  Aligned_cols=182  Identities=34%  Similarity=0.573  Sum_probs=152.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ...+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||+++|..++..++++++++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            55799999999999999999999999998888899888887778889988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++++++.+ ..|...+....  ++.|+++|+||+|+.+...          +..+++..++...+. +|+++||+
T Consensus        83 v~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak  150 (189)
T PTZ00369         83 VYSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAK  150 (189)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCC
Confidence            9999999999998 67777776543  4889999999999965433          666777888888887 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCcch--HHhhccccCCccc
Q 029144          162 TQQNVKAVFDAAIKVVLQPPKNK--KKKKRKAQKACSI  197 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~~~--~~~~~~~~~~c~~  197 (198)
                      +|.|++++|.++++.+.+..+..  ...++++++-|-+
T Consensus       151 ~~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  188 (189)
T PTZ00369        151 QRVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLI  188 (189)
T ss_pred             CCCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeee
Confidence            99999999999999886653332  2233334444544

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=9e-37  Score=214.41  Aligned_cols=165  Identities=25%  Similarity=0.508  Sum_probs=147.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|.+|+|||||++++..+.+++.+.+|.+..+...+.+++..+.+++||+||+++|..++..+++++|++++|
T Consensus         1 ~~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           1 REYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            35899999999999999999999999988889999877777788899899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ||++++.++..+ ..|...+....  ++.|+++|+||+|+.+...          ++.+++..+++..++ +|+++||++
T Consensus        81 ~d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~  148 (172)
T cd04141          81 YSVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAAL  148 (172)
T ss_pred             EECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCC
Confidence            999999999999 66777776543  5899999999999976543          788889999998888 799999999


Q ss_pred             CCCHHHHHHHHHHHHcCCC
Q 029144          163 QQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~  181 (198)
                      |.|++++|.++++.+....
T Consensus       149 ~~~v~~~f~~l~~~~~~~~  167 (172)
T cd04141         149 RHYIDDAFHGLVREIRRKE  167 (172)
T ss_pred             CCCHHHHHHHHHHHHHHhc
Confidence            9999999999999887643

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=3.3e-37  Score=208.04  Aligned_cols=170  Identities=29%  Similarity=0.543  Sum_probs=153.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ...+||+++|.+|+|||||++++....|...+..|++.. ..+.+.++++.+.+++|||+||++|.++...+++++|.++
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            457899999999999999999999999999999999755 4788999999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE  157 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (198)
                      +|||++++.+|+.+ ..|...+-...     ..-|+||+|||+|+...        ..+.++.+.+++++...|.-||||
T Consensus        87 lvydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~--------~~r~VS~~~Aq~WC~s~gnipyfE  157 (210)
T KOG0394|consen   87 LVYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGG--------KSRQVSEKKAQTWCKSKGNIPYFE  157 (210)
T ss_pred             EEeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCC--------ccceeeHHHHHHHHHhcCCceeEE
Confidence            99999999999999 89988887665     26799999999999762        124589999999999998889999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      +||++..|+.+.|..+.+.++..+.
T Consensus       158 tSAK~~~NV~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  158 TSAKEATNVDEAFEEIARRALANED  182 (210)
T ss_pred             ecccccccHHHHHHHHHHHHHhccc
Confidence            9999999999999999998877664

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.8e-37  Score=203.92  Aligned_cols=165  Identities=32%  Similarity=0.650  Sum_probs=151.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|.+|+|||||+.+|..+.+.+....|++..| .+.+.+++..+++.||||+||++|+.+.+.+++++.++|+
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl   89 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL   89 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence            569999999999999999999999999888777776555 6778899999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++.+++|..+ ..|+..+..+.  +++..++|+||+|....+.          ++.+++..|++++++ .|+|+||+
T Consensus        90 VYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SAk  157 (209)
T KOG0080|consen   90 VYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSAK  157 (209)
T ss_pred             EEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcchh
Confidence            9999999999999 99999999988  5777789999999866554          999999999999998 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 029144          162 TQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (198)
                      +.+|+...|+.++.+++..+
T Consensus       158 t~~~V~~~FeelveKIi~tp  177 (209)
T KOG0080|consen  158 TRENVQCCFEELVEKIIETP  177 (209)
T ss_pred             hhccHHHHHHHHHHHHhcCc
Confidence            99999999999999987644

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=9.4e-37  Score=218.45  Aligned_cols=162  Identities=31%  Similarity=0.600  Sum_probs=144.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +.|+++|..|||||||+++|..+.+.+.+.+|.+..+ ...+.+++..+.+++||++|+++|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            4699999999999999999999999888888886444 566788888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-CCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-GAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~  163 (198)
                      |++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++.+++... ++ .|+++||++|
T Consensus        81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~-~~~etSAktg  148 (202)
T cd04120          81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGM-RFCEASAKDN  148 (202)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCC-EEEEecCCCC
Confidence            99999999999 78888887765 5899999999999976543          7788888888875 55 7999999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 029144          164 QNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~~~  180 (198)
                      .|++++|.++++.+...
T Consensus       149 ~gV~e~F~~l~~~~~~~  165 (202)
T cd04120         149 FNVDEIFLKLVDDILKK  165 (202)
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999988654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-37  Score=210.02  Aligned_cols=171  Identities=30%  Similarity=0.590  Sum_probs=156.8

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCc
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~   79 (198)
                      |+....+|++++|..|+|||+|+.+|....|...+..|.+..+ ...+.++++.+++++|||+|++.|++....+++++.
T Consensus         1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~   80 (216)
T KOG0098|consen    1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA   80 (216)
T ss_pred             CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence            6777889999999999999999999999999999999987665 677889999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144           80 VFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC  158 (198)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (198)
                      ++++|||++++++|..+ ..|+..++.+. ++.-+++++||+||...+.          ++.++++.|+++++. .|+++
T Consensus        81 GalLVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~----------Vs~EEGeaFA~ehgL-ifmET  148 (216)
T KOG0098|consen   81 GALLVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARRE----------VSKEEGEAFAREHGL-IFMET  148 (216)
T ss_pred             ceEEEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhcccc----------ccHHHHHHHHHHcCc-eeehh
Confidence            99999999999999999 78888887775 8999999999999987765          999999999999998 79999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCCcc
Q 029144          159 SSKTQQNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~~~~  183 (198)
                      ||++++|++|.|..+...+++..+.
T Consensus       149 Sakt~~~VEEaF~nta~~Iy~~~q~  173 (216)
T KOG0098|consen  149 SAKTAENVEEAFINTAKEIYRKIQD  173 (216)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998888665443

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=8.7e-36  Score=209.71  Aligned_cols=170  Identities=66%  Similarity=1.104  Sum_probs=146.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|.+|+|||||+.++..+.+.+.+.+|....+...+.+++..+.+.+||+||++.|..++..+++++|++|+|||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS   81 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence            79999999999999999999999999999999877777777788888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      +++++++..+...|+..+....++.|+++|+||+|+.+.....  ......+.++.++++.++.+++..+|+++||++|.
T Consensus        82 ~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  161 (174)
T cd01871          82 LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQK  161 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccC
Confidence            9999999998557888887777789999999999996432100  01122345788999999999986589999999999


Q ss_pred             CHHHHHHHHHHH
Q 029144          165 NVKAVFDAAIKV  176 (198)
Q Consensus       165 ~i~~~~~~i~~~  176 (198)
                      |++++|..+++.
T Consensus       162 ~i~~~f~~l~~~  173 (174)
T cd01871         162 GLKTVFDEAIRA  173 (174)
T ss_pred             CHHHHHHHHHHh
Confidence            999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=1.7e-35  Score=212.97  Aligned_cols=165  Identities=28%  Similarity=0.464  Sum_probs=143.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +||+++|.+|+|||||+++|..+.+...+.+|.+..+ ...+.++ +..+.+.+||+||++.|..++..++++++++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999999998888888887544 4556666 7789999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS  159 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (198)
                      ||++++++++.+ ..|...+....     .++|+++|+||+|+.+...          +..+++.+++...+...|+++|
T Consensus        81 ~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~S  149 (201)
T cd04107          81 FDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFETS  149 (201)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEEe
Confidence            999999999999 78877776432     4789999999999975433          7788899999998855899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCCc
Q 029144          160 SKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      |++|.|++++|.++++.+....+
T Consensus       150 ak~~~~v~e~f~~l~~~l~~~~~  172 (201)
T cd04107         150 AKEGINIEEAMRFLVKNILANDK  172 (201)
T ss_pred             CCCCCCHHHHHHHHHHHHHHhch
Confidence            99999999999999998876544

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=2.1e-35  Score=212.07  Aligned_cols=166  Identities=30%  Similarity=0.577  Sum_probs=145.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +..+||+++|++|+|||||++++.++.+.+.+.+|.+..+ ...+.+++..+.+.+||+||++.|..++..+++++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            3578999999999999999999999988888888876443 455667787889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      +|||++++++++.+ ..|+..+....+..|+++|+||+|+.+...          +..+++..++...+. +|+++||++
T Consensus        84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  151 (199)
T cd04110          84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKV----------VETEDAYKFAGQMGI-SLFETSAKE  151 (199)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEECCC
Confidence            99999999999998 788888888778899999999999976543          667788888888886 799999999


Q ss_pred             CCCHHHHHHHHHHHHcCCC
Q 029144          163 QQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~  181 (198)
                      |.|++++|+++++.+....
T Consensus       152 ~~gi~~lf~~l~~~~~~~~  170 (199)
T cd04110         152 NINVEEMFNCITELVLRAK  170 (199)
T ss_pred             CcCHHHHHHHHHHHHHHhh
Confidence            9999999999999886643

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.9e-37  Score=200.62  Aligned_cols=164  Identities=32%  Similarity=0.620  Sum_probs=152.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      -++.+++|.+|+|||+|+.+|..+.|.+.|..|++..+ .+++.+++..+.++|||++|+++|+.+...++++.+++++|
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV   87 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   87 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence            46889999999999999999999999999999997555 67788999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      ||+++.+||... .+|++.++..++..|-++|+||+|.++.+.          +..++++.++...++ .+||+|+++.+
T Consensus        88 YDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FETSaKe~~  155 (198)
T KOG0079|consen   88 YDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFETSAKENE  155 (198)
T ss_pred             EECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hheehhhhhcc
Confidence            999999999999 999999999999999999999999988765          889999999999999 79999999999


Q ss_pred             CHHHHHHHHHHHHcCCC
Q 029144          165 NVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       165 ~i~~~~~~i~~~~~~~~  181 (198)
                      |++.+|.-|.+.+....
T Consensus       156 NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  156 NVEAMFHCITKQVLQAK  172 (198)
T ss_pred             cchHHHHHHHHHHHHHH
Confidence            99999999988775433

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=4.6e-35  Score=203.99  Aligned_cols=160  Identities=29%  Similarity=0.581  Sum_probs=141.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      .+||+++|.+|+|||||++++..+.+...+.+|..+.+...+.+++..+.+.+||+||+++|..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            37999999999999999999999999888888888777777888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |++++.+++.. ..|...+....  ++.|+++|+||+|+.+...          +..++...++..++. +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (163)
T cd04136          81 SITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERV----------VSREEGQALARQWGC-PFYETSAKSK  148 (163)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------ecHHHHHHHHHHcCC-eEEEecCCCC
Confidence            99999999988 67777776543  5899999999999976443          666777788888885 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029144          164 QNVKAVFDAAIKVV  177 (198)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (198)
                      .|++++|.++++.+
T Consensus       149 ~~v~~l~~~l~~~~  162 (163)
T cd04136         149 INVDEVFADLVRQI  162 (163)
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999998765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=5.4e-35  Score=204.41  Aligned_cols=162  Identities=31%  Similarity=0.628  Sum_probs=142.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .+||+++|++|+|||||++++..+.+...+.+|.+..+. ..+.+++..+.+.+||+||++.|...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            479999999999999999999999988888888766553 4566788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      ||++++++++.+ ..|+..+.... ++.|+++|+||+|+.....          ++.+++..++...+. +++++||++|
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~  149 (166)
T cd04122          82 YDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRD----------VTYEEAKQFADENGL-LFLECSAKTG  149 (166)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-EEEEEECCCC
Confidence            999999999998 78887776554 6899999999999976543          777888899988887 8999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029144          164 QNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (198)
                      .|++++|..+++.+.+
T Consensus       150 ~~i~e~f~~l~~~~~~  165 (166)
T cd04122         150 ENVEDAFLETAKKIYQ  165 (166)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999987753

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=9.4e-35  Score=204.63  Aligned_cols=171  Identities=63%  Similarity=1.061  Sum_probs=148.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECC
Q 029144            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI   88 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   88 (198)
                      |+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.|..++..+++++|++++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            68999999999999999999999888888887777777788888899999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCH
Q 029144           89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNV  166 (198)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (198)
                      ++++++.+...|+..+....++.|+++|+||+|+.++....  ........++.+++..++...+...|+++||+++.|+
T Consensus        81 ~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  160 (174)
T smart00174       81 SPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGV  160 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCH
Confidence            99999998667999988877899999999999997632211  1122233477888899999998768999999999999


Q ss_pred             HHHHHHHHHHHcC
Q 029144          167 KAVFDAAIKVVLQ  179 (198)
Q Consensus       167 ~~~~~~i~~~~~~  179 (198)
                      +++|..+++.+..
T Consensus       161 ~~lf~~l~~~~~~  173 (174)
T smart00174      161 REVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999998754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=6.4e-35  Score=203.61  Aligned_cols=161  Identities=29%  Similarity=0.571  Sum_probs=141.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      ++||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|..++..+++++|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            47999999999999999999999988888889988777777888888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |++++.+++.+ ..|...+....  ++.|+++|+||+|+.+...          +..+++..+++..+. +|+++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (164)
T cd04175          81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWGC-AFLETSAKAK  148 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccE----------EcHHHHHHHHHHhCC-EEEEeeCCCC
Confidence            99999999998 66666665432  6899999999999976543          666777788888887 7999999999


Q ss_pred             CCHHHHHHHHHHHHc
Q 029144          164 QNVKAVFDAAIKVVL  178 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~  178 (198)
                      .|++++|.++++.+.
T Consensus       149 ~~v~~~~~~l~~~l~  163 (164)
T cd04175         149 INVNEIFYDLVRQIN  163 (164)
T ss_pred             CCHHHHHHHHHHHhh
Confidence            999999999998653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=1.1e-34  Score=206.80  Aligned_cols=180  Identities=29%  Similarity=0.527  Sum_probs=152.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999999998777777776444 456677788899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      |+++++++..+ ..|+..+.... .+.|+++|+||+|+.+...          +..+++..++...+. +|+++||+++.
T Consensus        81 d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~evSa~~~~  148 (188)
T cd04125          81 DVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKV----------VDSNIAKSFCDSLNI-PFFETSAKQSI  148 (188)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCccccc----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            99999999999 77888887765 4789999999999976543          677788888888888 79999999999


Q ss_pred             CHHHHHHHHHHHHcCCCcc------hHHhhccccCCcccC
Q 029144          165 NVKAVFDAAIKVVLQPPKN------KKKKKRKAQKACSIL  198 (198)
Q Consensus       165 ~i~~~~~~i~~~~~~~~~~------~~~~~~~~~~~c~~~  198 (198)
                      |++++|.++++.+......      ..+++..++++|+|.
T Consensus       149 ~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (188)
T cd04125         149 NVEEAFILLVKLIIKRLEEQELSPKNIKQQFKKKNNCFIN  188 (188)
T ss_pred             CHHHHHHHHHHHHHHHhhcCcCCccccccccccccCcccC
Confidence            9999999999988653332      234667788889873

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-35  Score=193.19  Aligned_cols=164  Identities=32%  Similarity=0.649  Sum_probs=149.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeE-EEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+|++++|...+|||||+.++....+...+..|.+-.+.. ++.-..+.+.+++|||+|+++|+.....++++++++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            46799999999999999999999999988888888766644 44445677999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      +||++|.++|..+ +.|..++..++ .+.|+++|+||||+.+++.          ++.+.++.+++++|+ .|||+||+.
T Consensus       100 myDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRv----------is~e~g~~l~~~LGf-efFEtSaK~  167 (193)
T KOG0093|consen  100 MYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERV----------ISHERGRQLADQLGF-EFFETSAKE  167 (193)
T ss_pred             EEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCcccee----------eeHHHHHHHHHHhCh-HHhhhcccc
Confidence            9999999999999 99999999988 7999999999999988775          999999999999999 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029144          163 QQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (198)
                      +.|++.+|+.++..+-+.
T Consensus       168 NinVk~~Fe~lv~~Ic~k  185 (193)
T KOG0093|consen  168 NINVKQVFERLVDIICDK  185 (193)
T ss_pred             cccHHHHHHHHHHHHHHH
Confidence            999999999999877543

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=1.8e-34  Score=209.59  Aligned_cols=161  Identities=27%  Similarity=0.438  Sum_probs=140.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-ceeEEEEECC-eEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +||+++|.+|+|||||+++|..+.+...+.+|.+. .+...+.+++ ..+.+.+||+||++.+..++..+++++|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            58999999999999999999999998888888864 4455566654 578999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           85 FSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ||++++++++.+ ..|...+....    .+.|+++|+||+|+.+.+.          +..+++..+++.++. +++++||
T Consensus        81 ~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iSA  148 (215)
T cd04109          81 YDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVSA  148 (215)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEEC
Confidence            999999999998 78888887764    2468999999999975443          777888899998887 7999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029144          161 KTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++|+|++++|+++++.+..
T Consensus       149 ktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         149 KTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999998864

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=5.8e-34  Score=200.60  Aligned_cols=172  Identities=56%  Similarity=1.011  Sum_probs=147.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|++|+|||||++++..+.+...+.++..+.+...+.+++..+.+.+||+||++.|...+..+++++|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            58999999999999999999999998888888877777777888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc--ccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF--LADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      ++++.+++.....|...+....++.|+++|+||+|+.+....  .......+.++.+++..+++..+..+|+++||++|.
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  160 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK  160 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence            999999999866788888766679999999999999654211  011222335777889999999987789999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029144          165 NVKAVFDAAIKVVL  178 (198)
Q Consensus       165 ~i~~~~~~i~~~~~  178 (198)
                      |++++|+.+++.++
T Consensus       161 gi~~~f~~~~~~~~  174 (174)
T cd04135         161 GLKTVFDEAILAIL  174 (174)
T ss_pred             CHHHHHHHHHHHhC
Confidence            99999999998763

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=3.4e-34  Score=200.58  Aligned_cols=163  Identities=29%  Similarity=0.624  Sum_probs=143.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            468999999999999999999999999888888886554 4556778888999999999999999999899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++...+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (167)
T cd01867          82 VYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRV----------VSKEEGEALADEYGI-KFLETSAKA  149 (167)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 67888887765 5799999999999976543          677778888888887 799999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      +.|++++|.++++.+..
T Consensus       150 ~~~v~~~~~~i~~~~~~  166 (167)
T cd01867         150 NINVEEAFFTLAKDIKK  166 (167)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=100.00  E-value=3.1e-35  Score=204.53  Aligned_cols=179  Identities=66%  Similarity=1.093  Sum_probs=164.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ...+|+++||..++|||+|+..+..+.|++.|.||..+++...+.++ +..+.+.+|||+||+.|+.++...+.++|+++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            35789999999999999999999999999999999999999999995 99999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc--ccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF--LADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++|++.++.+++.+...|+..+.+++|+.|+++||+|.||.++...  ...+.....++.++++.++++.|+..|+||||
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa  161 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA  161 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence            9999999999999999999999999999999999999999854321  23345566789999999999999889999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCc
Q 029144          161 KTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      +++.|++++|+..+..+....+
T Consensus       162 ~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  162 LTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999999988765

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=5.2e-34  Score=198.80  Aligned_cols=160  Identities=30%  Similarity=0.577  Sum_probs=139.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      .+||+++|.+|+|||||++++..+.+.+.+.+|....+...+.+++..+.+++||+||+++|..++..+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            37999999999999999999999999888888887666777778888889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |++++.++..+ ..|...+....  .+.|+++|+||+|+.+...          +...+...++...+. +++++||+++
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (163)
T cd04176          81 SLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKSK  148 (163)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCCC
Confidence            99999999998 77777776543  5899999999999965432          566667777777776 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029144          164 QNVKAVFDAAIKVV  177 (198)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (198)
                      .|++++|.++++.+
T Consensus       149 ~~v~~l~~~l~~~l  162 (163)
T cd04176         149 TMVNELFAEIVRQM  162 (163)
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=4.5e-34  Score=198.79  Aligned_cols=158  Identities=35%  Similarity=0.648  Sum_probs=140.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|++|+|||||++++..+.+.+.+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999999999999999888888886544 456677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      |++++++++.+ ..|+..+.... .+.|+++|+||+|+.+.+.          +..+++..+++.++. +|+++||++|.
T Consensus        81 d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~  148 (161)
T cd04117          81 DISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQ----------VGDEQGNKLAKEYGM-DFFETSACTNS  148 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999999 78888887665 4799999999999976543          777889999988886 79999999999


Q ss_pred             CHHHHHHHHHHH
Q 029144          165 NVKAVFDAAIKV  176 (198)
Q Consensus       165 ~i~~~~~~i~~~  176 (198)
                      |++++|.+|++.
T Consensus       149 ~v~~~f~~l~~~  160 (161)
T cd04117         149 NIKESFTRLTEL  160 (161)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=4e-34  Score=204.26  Aligned_cols=163  Identities=36%  Similarity=0.679  Sum_probs=140.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +||+++|.+|+|||||++++..+.+. +.+.+|.+..+ ...+.+++..+.+++||+||++++...+..+++++|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999998875 35667776554 34567788889999999999999999888999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      +|++++++++.+ ..|+..+.... .+.|+++|+||+|+...+.          +..+++..++..++. +|+++||++|
T Consensus        81 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~Sa~~~  148 (191)
T cd04112          81 YDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERV----------VKREDGERLAKEYGV-PFMETSAKTG  148 (191)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhccc----------cCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence            999999999998 77888887765 4789999999999975443          666788888888887 7999999999


Q ss_pred             CCHHHHHHHHHHHHcCCC
Q 029144          164 QNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~~~~  181 (198)
                      .|++++|.++++.+....
T Consensus       149 ~~v~~l~~~l~~~~~~~~  166 (191)
T cd04112         149 LNVELAFTAVAKELKHRK  166 (191)
T ss_pred             CCHHHHHHHHHHHHHHhc
Confidence            999999999999886654

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=9.1e-34  Score=199.48  Aligned_cols=169  Identities=54%  Similarity=0.957  Sum_probs=144.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|.+|+|||||+.++..+.+..++.+|..+.+...+.+++..+.+.+||+||++.|...+..+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            68999999999999999999999999889998877777777888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      ++++.+++.+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..+++..+...|+++||++|.
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~  160 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK  160 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            9999999988567888887766789999999999996532100  00112344677889999999887789999999999


Q ss_pred             CHHHHHHHHHH
Q 029144          165 NVKAVFDAAIK  175 (198)
Q Consensus       165 ~i~~~~~~i~~  175 (198)
                      |++++|+.++-
T Consensus       161 ~v~~lf~~~~~  171 (173)
T cd04130         161 NLKEVFDTAIL  171 (173)
T ss_pred             CHHHHHHHHHh
Confidence            99999998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=6.9e-34  Score=206.73  Aligned_cols=163  Identities=26%  Similarity=0.442  Sum_probs=141.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ...+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+..++..+.+.+||++|+++|..++..++++++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            4678999999999999999999999999888888886444 445666777899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      +|||++++.++..+ ..|+..+....++.|+++|+||+|+....           +..+++ .++...++ .|+++||++
T Consensus        91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~  156 (219)
T PLN03071         91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS  156 (219)
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence            99999999999998 78999888777899999999999996432           334444 66677776 799999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029144          163 QQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (198)
                      |.|++++|.++++.+...
T Consensus       157 ~~~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        157 NYNFEKPFLYLARKLAGD  174 (219)
T ss_pred             CCCHHHHHHHHHHHHHcC
Confidence            999999999999988654

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=7.1e-34  Score=201.21  Aligned_cols=169  Identities=30%  Similarity=0.566  Sum_probs=140.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|..|+|||||+++|..+.+.+.+.+|.+..+ ...+.+++..+.+.+||++|++.|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999999999888999987555 456778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      |++++.++..+ ..|+..+....+ ..| ++|+||+|+.....     ........++++++++..+. +++++||++|.
T Consensus        81 D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~-----~~~~~~~~~~~~~~a~~~~~-~~~e~SAk~g~  152 (182)
T cd04128          81 DLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLP-----PEEQEEITKQARKYAKAMKA-PLIFCSTSHSI  152 (182)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhcccccc-----chhhhhhHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999998 788888876553 456 68899999964210     00011234667788888886 79999999999


Q ss_pred             CHHHHHHHHHHHHcCCCcc
Q 029144          165 NVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       165 ~i~~~~~~i~~~~~~~~~~  183 (198)
                      |++++|.++++.+...+..
T Consensus       153 ~v~~lf~~l~~~l~~~~~~  171 (182)
T cd04128         153 NVQKIFKIVLAKAFDLPLT  171 (182)
T ss_pred             CHHHHHHHHHHHHHhcCCC
Confidence            9999999999988764433

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=3e-34  Score=207.72  Aligned_cols=169  Identities=28%  Similarity=0.437  Sum_probs=133.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|.+|+|||||+++|..+.+.. +.+|.+..+...   ....+.+.+||++|++.|..++..+++++|++|+|||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~---~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D   76 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK---QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD   76 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE---EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence            589999999999999999999998865 466665443221   1245788999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc---------ccCCCCCccccHHHHHHHHHHcCC-----
Q 029144           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF---------LADHPGAVPITTAQGEELRKLIGA-----  152 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~-----  152 (198)
                      ++++++|..+..+|........++.|+++|+||+|+.+....         .......+.+..++++.++.+.+.     
T Consensus        77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~  156 (220)
T cd04126          77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD  156 (220)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence            999999999954455444433368999999999999762110         011122456888999999998762     


Q ss_pred             --------CEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          153 --------PVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       153 --------~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                              .+|+|+||++|.||+++|..+++.+..
T Consensus       157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                    369999999999999999999987764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=3.4e-34  Score=199.54  Aligned_cols=159  Identities=41%  Similarity=0.840  Sum_probs=146.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc-ccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      ||+++|++++|||||+++|.++.+++.+.+|. .+.....+.+++..+.+.+||++|++.|..++..+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999988 55567778889999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCC
Q 029144           87 LISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN  165 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (198)
                      ++++++++.+ ..|+..+....+ +.|+++|+||+|+.+.+.          ++.++++.++.+++. +|+++||+++.|
T Consensus        81 ~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~~  148 (162)
T PF00071_consen   81 VTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELGV-PYFEVSAKNGEN  148 (162)
T ss_dssp             TTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTTS-EEEEEBTTTTTT
T ss_pred             cccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhCC-EEEEEECCCCCC
Confidence            9999999999 799999999886 799999999999987554          888999999999995 899999999999


Q ss_pred             HHHHHHHHHHHHc
Q 029144          166 VKAVFDAAIKVVL  178 (198)
Q Consensus       166 i~~~~~~i~~~~~  178 (198)
                      +.++|..+++.+.
T Consensus       149 v~~~f~~~i~~i~  161 (162)
T PF00071_consen  149 VKEIFQELIRKIL  161 (162)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.6e-35  Score=200.53  Aligned_cols=169  Identities=34%  Similarity=0.588  Sum_probs=154.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +.-+||+++|.+++|||-|+.||..+.|..+..+|.+..+ ...+.++++.+..+||||+||++|+.....+++++.+++
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl   91 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   91 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence            3578999999999999999999999999999999997666 567789999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++...+|+.+ .+|+..++.+. +++++++|+||+||..-+.          ++.++++.++...+. .++++||+
T Consensus        92 lVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lra----------V~te~~k~~Ae~~~l-~f~EtSAl  159 (222)
T KOG0087|consen   92 LVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRA----------VPTEDGKAFAEKEGL-FFLETSAL  159 (222)
T ss_pred             EEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhccc----------cchhhhHhHHHhcCc-eEEEeccc
Confidence            99999999999988 99999999998 7999999999999987554          899999999999998 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCcch
Q 029144          162 TQQNVKAVFDAAIKVVLQPPKNK  184 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~~~  184 (198)
                      +..|+++.|..++..++....++
T Consensus       160 ~~tNVe~aF~~~l~~I~~~vs~k  182 (222)
T KOG0087|consen  160 DATNVEKAFERVLTEIYKIVSKK  182 (222)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988886644433

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=8.1e-34  Score=198.27  Aligned_cols=160  Identities=33%  Similarity=0.668  Sum_probs=139.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999999998888888876444 344556777889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      |++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++.+++...+. +++++||+++.
T Consensus        82 d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (165)
T cd01865          82 DITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERV----------VSSERGRQLADQLGF-EFFEASAKENI  149 (165)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence            99999999998 78888887765 5789999999999976543          566778888888887 79999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029144          165 NVKAVFDAAIKVVL  178 (198)
Q Consensus       165 ~i~~~~~~i~~~~~  178 (198)
                      |++++|.++++.+.
T Consensus       150 gv~~l~~~l~~~~~  163 (165)
T cd01865         150 NVKQVFERLVDIIC  163 (165)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=5.3e-34  Score=201.87  Aligned_cols=163  Identities=37%  Similarity=0.632  Sum_probs=141.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEEC----------CeEEEEEEEeCCCccCccccccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVD----------GSTVNLGLWDTAGQEDYNRLRPL   73 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~l~i~D~~G~~~~~~~~~~   73 (198)
                      +.+||+++|++|+|||||++++..+.+.+.+.+|.+..+. ..+.+.          +..+.+.+||+||++.|...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            5689999999999999999999999998888888765443 333332          45688999999999999999999


Q ss_pred             ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144           74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      +++++|++++|||+++++++..+ ..|+..+....  ++.|+++|+||+|+.+...          ++.+++.+++...+
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~  151 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ----------VSEEQAKALADKYG  151 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCc----------cCHHHHHHHHHHcC
Confidence            99999999999999999999999 78888887653  5889999999999976543          67788899999998


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      . +++++||++|.|++++|+++++.+.+
T Consensus       152 ~-~~~e~Sak~~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         152 I-PYFETSAATGTNVEKAVERLLDLVMK  178 (180)
T ss_pred             C-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            7 79999999999999999999987754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=9.5e-34  Score=197.66  Aligned_cols=160  Identities=33%  Similarity=0.619  Sum_probs=140.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|++|+|||||++++.++.+...+.++..+.+.....+++..+.+.+||+||+++|..++..+++++|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999999998888888887777777888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      ++++++++.+ ..|...+....  .+.|+++|+||+|+.+...          +..+++..++...+. +|+++||+++.
T Consensus        81 ~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (164)
T smart00173       81 ITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERV----------VSTEEGKELARQWGC-PFLETSAKERV  148 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------EcHHHHHHHHHHcCC-EEEEeecCCCC
Confidence            9999999988 66666655443  4789999999999976543          666778888888886 89999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029144          165 NVKAVFDAAIKVVL  178 (198)
Q Consensus       165 ~i~~~~~~i~~~~~  178 (198)
                      |++++|+++++.+.
T Consensus       149 ~i~~l~~~l~~~~~  162 (164)
T smart00173      149 NVDEAFYDLVREIR  162 (164)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=1e-33  Score=196.85  Aligned_cols=159  Identities=36%  Similarity=0.626  Sum_probs=139.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      .+||+++|.+|+|||||++++.++.+...+.+|....+...+.+++..+.+.+||+||++.|..++..++++++++++||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            37999999999999999999999998888889888777777778888888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |++++.+++.+ ..|...+....  .+.|+++|+||+|+.+..           ....++..++...+. +++++||++|
T Consensus        81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (162)
T cd04138          81 AINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKTR  147 (162)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCCC
Confidence            99999999988 66766666543  589999999999997632           566777888888887 7999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029144          164 QNVKAVFDAAIKVV  177 (198)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (198)
                      .|++++|.++++.+
T Consensus       148 ~gi~~l~~~l~~~~  161 (162)
T cd04138         148 QGVEEAFYTLVREI  161 (162)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=1.1e-33  Score=197.66  Aligned_cols=161  Identities=32%  Similarity=0.672  Sum_probs=141.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .+||+++|++|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++++...+..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999999988777777776444 45566788888999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      ||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++...+. +++++||++|
T Consensus        82 ~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  149 (166)
T cd01869          82 YDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRV----------VDYSEAQEFADELGI-PFLETSAKNA  149 (166)
T ss_pred             EECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            999999999999 77888887765 6799999999999976543          677888888988887 7999999999


Q ss_pred             CCHHHHHHHHHHHHc
Q 029144          164 QNVKAVFDAAIKVVL  178 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~  178 (198)
                      .|++++|..+++.+.
T Consensus       150 ~~v~~~~~~i~~~~~  164 (166)
T cd01869         150 TNVEQAFMTMAREIK  164 (166)
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999998775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=1.2e-33  Score=196.99  Aligned_cols=160  Identities=35%  Similarity=0.617  Sum_probs=140.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      .+||+++|.+|+|||||++++.++.+...+.++....+.....+++..+.+.+||+||++++..++..+++++|++++||
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   81 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF   81 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence            58999999999999999999999988888888887777767778888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |++++.+++.+ ..|...+....  .+.|+++|+||+|+.....          +..++...++...+. +++++||++|
T Consensus        82 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  149 (164)
T cd04145          82 SVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKDR  149 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCCC
Confidence            99999999998 66766666542  5899999999999976543          666777888888887 7999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029144          164 QNVKAVFDAAIKVV  177 (198)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (198)
                      .|++++|+++++.+
T Consensus       150 ~~i~~l~~~l~~~~  163 (164)
T cd04145         150 LNVDKAFHDLVRVI  163 (164)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=1.5e-33  Score=196.99  Aligned_cols=158  Identities=26%  Similarity=0.508  Sum_probs=137.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|.+|+|||||++++..+.+...+.++....+......+...+.+.+||+||+++|..++..+++.++++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            79999999999999999999999988888888876666666677788999999999999999988888999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           87 LISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ++++++++.+ ..|...+....    ++.|+++|+||+|+.+...          +..+++..++..++. .|+++||++
T Consensus        82 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA~~  149 (165)
T cd04140          82 VTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE----------VSSNEGAACATEWNC-AFMETSAKT  149 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCe----------ecHHHHHHHHHHhCC-cEEEeecCC
Confidence            9999999988 67766665532    5799999999999976433          667777888888887 799999999


Q ss_pred             CCCHHHHHHHHHHH
Q 029144          163 QQNVKAVFDAAIKV  176 (198)
Q Consensus       163 ~~~i~~~~~~i~~~  176 (198)
                      |.|++++|++|++.
T Consensus       150 g~~v~~~f~~l~~~  163 (165)
T cd04140         150 NHNVQELFQELLNL  163 (165)
T ss_pred             CCCHHHHHHHHHhc
Confidence            99999999999864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=2.7e-33  Score=199.85  Aligned_cols=168  Identities=44%  Similarity=0.668  Sum_probs=133.1

Q ss_pred             eeEEEEECCCCCCHHHHHH-HHhhC-----CCCCCCCCccc--cceeEE--------EEECCeEEEEEEEeCCCccCccc
Q 029144            6 FIKCVTVGDGAVGKTCMLI-SYTSN-----TFPTDYVPTVF--DNFSAN--------VVVDGSTVNLGLWDTAGQEDYNR   69 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~-~~~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~l~i~D~~G~~~~~~   69 (198)
                      .+||+++|..|+|||||+. ++.++     .+...+.||.+  +.+...        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 55543     34566778874  333222        25688899999999999975  3


Q ss_pred             ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc---------CCCCCccccH
Q 029144           70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA---------DHPGAVPITT  140 (198)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~---------~~~~~~~~~~  140 (198)
                      ....+++++|++++|||++++.+++.+...|...+....++.|+++|+||+|+.+......         .....+.++.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            4566889999999999999999999985569888887777899999999999965211000         0012356889


Q ss_pred             HHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          141 AQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      ++++.++++.++ +|+||||++|.|++++|..+++.
T Consensus       160 ~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999998 89999999999999999999874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=2.1e-33  Score=196.16  Aligned_cols=162  Identities=30%  Similarity=0.557  Sum_probs=140.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      +.+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.|...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999999988877777765433 4566778877899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..+++..+...++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sa~~  150 (165)
T cd01864          82 AYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQRE----------VLFEEACTLAEKNGMLAVLETSAKE  150 (165)
T ss_pred             EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCCcEEEEEECCC
Confidence            9999999999988 78888887654 5899999999999976543          6777888888888876799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029144          163 QQNVKAVFDAAIKVV  177 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~  177 (198)
                      |.|++++|+++++.+
T Consensus       151 ~~~v~~~~~~l~~~l  165 (165)
T cd01864         151 SQNVEEAFLLMATEL  165 (165)
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999998753

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=4.4e-33  Score=199.30  Aligned_cols=167  Identities=32%  Similarity=0.522  Sum_probs=141.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +||+++|.+|+|||||++++..+.+.. .+.+|.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999998864 6777776655 45677888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      ||++++.+++.+ ..|+..+....++.|+++|+||+|+.+..      .....+..+++..++...+. +++++||+++.
T Consensus        81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~------~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~  152 (193)
T cd04118          81 YDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQD------RSLRQVDFHDVQDFADEIKA-QHFETSSKTGQ  152 (193)
T ss_pred             EECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEcccccccc------cccCccCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            999999999988 77888887766789999999999986432      11223556677888888877 79999999999


Q ss_pred             CHHHHHHHHHHHHcCCC
Q 029144          165 NVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       165 ~i~~~~~~i~~~~~~~~  181 (198)
                      |++++|+++++.+....
T Consensus       153 gv~~l~~~i~~~~~~~~  169 (193)
T cd04118         153 NVDELFQKVAEDFVSRA  169 (193)
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999886543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=4.1e-33  Score=194.84  Aligned_cols=159  Identities=30%  Similarity=0.513  Sum_probs=135.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|++|||||||+++++.+.+...+.+|.+..+ ...+..++..+.+.+||+||++.+..++..++..+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999999888887888876544 334455677899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN  165 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (198)
                      |+++++++..+ ..|+..+....++.|+++|+||+|+.+..           .. .+..+++...+. +++++||++|.|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~-----------~~-~~~~~~~~~~~~-~~~e~Sa~~~~~  146 (166)
T cd00877          81 DVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK-----------VK-AKQITFHRKKNL-QYYEISAKSNYN  146 (166)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc-----------CC-HHHHHHHHHcCC-EEEEEeCCCCCC
Confidence            99999999998 78989998887789999999999997432           22 234456666555 799999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 029144          166 VKAVFDAAIKVVLQ  179 (198)
Q Consensus       166 i~~~~~~i~~~~~~  179 (198)
                      ++++|+++++.+..
T Consensus       147 v~~~f~~l~~~~~~  160 (166)
T cd00877         147 FEKPFLWLARKLLG  160 (166)
T ss_pred             hHHHHHHHHHHHHh
Confidence            99999999988864

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=2.3e-33  Score=196.18  Aligned_cols=160  Identities=23%  Similarity=0.542  Sum_probs=140.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+++||+||++.+..++..+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998888888886554 456677888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC------CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144           86 SLISKASYENVAKKWIPELRHYA------PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS  159 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (198)
                      |++++.++..+ ..|+..+....      .+.|+++|+||+|+.+...          +..++.+.++...+. +++++|
T Consensus        81 D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  148 (168)
T cd04119          81 DVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFETS  148 (168)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEEE
Confidence            99999999988 78888887654      3689999999999975332          677788888888886 799999


Q ss_pred             cCCCCCHHHHHHHHHHHHc
Q 029144          160 SKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~  178 (198)
                      |++|.|++++|++|++.++
T Consensus       149 a~~~~gi~~l~~~l~~~l~  167 (168)
T cd04119         149 ACTGEGVNEMFQTLFSSIV  167 (168)
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.9e-33  Score=195.75  Aligned_cols=158  Identities=33%  Similarity=0.583  Sum_probs=138.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEEC--CeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD--GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      +||+++|.+|+|||||++++..+.+.+.+.+|.+..+ ...+.++  +..+.+++||+||++.|...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999999988888888875544 4455565  677899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |||+++++++..+ ..|+..+....++.|+++|+||+|+.....          +..+++..++...+. +++++||+++
T Consensus        81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (162)
T cd04106          81 VFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAV----------ITNEEAEALAKRLQL-PLFRTSVKDD  148 (162)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-eEEEEECCCC
Confidence            9999999999988 788888887778999999999999976543          677888889999888 7999999999


Q ss_pred             CCHHHHHHHHHHH
Q 029144          164 QNVKAVFDAAIKV  176 (198)
Q Consensus       164 ~~i~~~~~~i~~~  176 (198)
                      .|++++|.+|.+.
T Consensus       149 ~~v~~l~~~l~~~  161 (162)
T cd04106         149 FNVTELFEYLAEK  161 (162)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=4.4e-33  Score=193.81  Aligned_cols=159  Identities=29%  Similarity=0.508  Sum_probs=135.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|.+|+|||||++++..+.+.+.+.++....+ .....+++..+.+.+||+||++.|..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999988777766664333 445567788899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN  165 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (198)
                      |++++.++..+ ..|+..+....++.|+++|+||+|+.+.             ..++...++...+. +++++||++|.|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~~~~~~~~~~-~~~~~Sa~~~~g  145 (161)
T cd04124          81 DVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS-------------VTQKKFNFAEKHNL-PLYYVSAADGTN  145 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------HHHHHHHHHHHcCC-eEEEEeCCCCCC
Confidence            99999999988 7898888877778999999999998432             12345566666776 799999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 029144          166 VKAVFDAAIKVVLQP  180 (198)
Q Consensus       166 i~~~~~~i~~~~~~~  180 (198)
                      ++++|+.+++.+...
T Consensus       146 v~~l~~~l~~~~~~~  160 (161)
T cd04124         146 VVKLFQDAIKLAVSY  160 (161)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999877653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=1.2e-32  Score=195.97  Aligned_cols=177  Identities=48%  Similarity=0.780  Sum_probs=147.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      .||+++|++|+|||||++++..+.+.+.+.++....+...+.+++..+.+.+||++|++.+...+...++++++++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~   81 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA   81 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence            58999999999999999999988888777788777776677778888889999999999888877778899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCH
Q 029144           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNV  166 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (198)
                      +++.++++.+...|+..+....++.|+++|+||+|+.+...........+.+..+++..+++..+..+||++||++|.|+
T Consensus        82 i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v  161 (187)
T cd04129          82 VDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGV  161 (187)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCH
Confidence            99999999986679999887778899999999999964321111112233466778888999998768999999999999


Q ss_pred             HHHHHHHHHHHcCCCcc
Q 029144          167 KAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       167 ~~~~~~i~~~~~~~~~~  183 (198)
                      +++|.++++.+....++
T Consensus       162 ~~~f~~l~~~~~~~~~~  178 (187)
T cd04129         162 DDVFEAATRAALLVRKS  178 (187)
T ss_pred             HHHHHHHHHHHhcccCc
Confidence            99999999887655443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.6e-34  Score=188.57  Aligned_cols=166  Identities=31%  Similarity=0.560  Sum_probs=150.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .-+|++++|+.|+|||+|+.+|..+.+.++..-|.+..+ +..+.+.++.++++||||+||++|++..+.+++++.+.++
T Consensus         8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL   87 (214)
T KOG0086|consen    8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL   87 (214)
T ss_pred             hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence            457999999999999999999999999888888887666 5667789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||++++++|..+ ..|+...+... +++-+++++||.|+.++++          ++..++..|+++... .+.|+||++
T Consensus        88 VYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~----------VtflEAs~FaqEnel-~flETSa~T  155 (214)
T KOG0086|consen   88 VYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSALT  155 (214)
T ss_pred             EEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhh----------hhHHHHHhhhcccce-eeeeecccc
Confidence            9999999999999 88888888877 6888999999999988776          999999999999988 799999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCc
Q 029144          163 QQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~~  182 (198)
                      |+|++|.|-..++.++.+..
T Consensus       156 GeNVEEaFl~c~~tIl~kIE  175 (214)
T KOG0086|consen  156 GENVEEAFLKCARTILNKIE  175 (214)
T ss_pred             cccHHHHHHHHHHHHHHHHh
Confidence            99999999998888765443

>cd01870 RhoA_like RhoA-like subfamily

Probab=100.00  E-value=1.2e-32  Score=194.14  Aligned_cols=171  Identities=51%  Similarity=0.918  Sum_probs=144.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      .||+++|++|+|||||++++..+.+...+.+|....+...+.+++..+.+.+||+||++.|...+...+.++|++++|||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~   81 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS   81 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence            58999999999999999999999998888888887776677788888999999999999999988889999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      ++++++++.+...|...+....++.|+++|+||+|+.+.....  ........+..+++++++...+..+++++||++|.
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  161 (175)
T cd01870          82 IDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKE  161 (175)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCc
Confidence            9999999988667888887766789999999999987542211  01112234566788888888877689999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029144          165 NVKAVFDAAIKVV  177 (198)
Q Consensus       165 ~i~~~~~~i~~~~  177 (198)
                      |++++|.++++.+
T Consensus       162 ~v~~lf~~l~~~~  174 (175)
T cd01870         162 GVREVFEMATRAA  174 (175)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999999765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=4.9e-33  Score=195.18  Aligned_cols=162  Identities=35%  Similarity=0.631  Sum_probs=139.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      ++..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++++|++
T Consensus         2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~   81 (170)
T cd04116           2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC   81 (170)
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence            45679999999999999999999999988877777765443 45667788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      ++|||++++++++.+ ..|...+....     ++.|+++|+||+|+.+..           +..+++++++.+.+..+++
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~  149 (170)
T cd04116          82 LLTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-----------VSTEEAQAWCRENGDYPYF  149 (170)
T ss_pred             EEEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECccccccc-----------cCHHHHHHHHHHCCCCeEE
Confidence            999999999999988 77776665432     468999999999996322           6778888999888866899


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 029144          157 ECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      ++||++|.|++++|..+++.
T Consensus       150 e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         150 ETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             EEECCCCCCHHHHHHHHHhh
Confidence            99999999999999999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=8.5e-33  Score=197.96  Aligned_cols=180  Identities=22%  Similarity=0.395  Sum_probs=139.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccc--------cccccCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYRG   77 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~~~   77 (198)
                      +||+++|.+|||||||++++..+.+...+.||....+ ...+.+++..+.+.+|||||.+.+...        ....+++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999999999888888886443 445667888899999999997655321        2345789


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhh----CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-HcCC
Q 029144           78 ADVFLLAFSLISKASYENVAKKWIPELRHY----APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-LIGA  152 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  152 (198)
                      +|++++|||++++++++.+ ..|...+...    .+++|+++|+||+|+.+.+.          +..++++.++. .+++
T Consensus        81 ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~----------~~~~~~~~~~~~~~~~  149 (198)
T cd04142          81 SRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRF----------APRHVLSVLVRKSWKC  149 (198)
T ss_pred             CCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECcccccccc----------ccHHHHHHHHHHhcCC
Confidence            9999999999999999988 7777766554    25799999999999976443          55566666654 4566


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHcCCCcchHHhh----ccccCCcccC
Q 029144          153 PVYIECSSKTQQNVKAVFDAAIKVVLQPPKNKKKKK----RKAQKACSIL  198 (198)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~----~~~~~~c~~~  198 (198)
                       +|+++||++|.|++++|..+++.+....+......    .-.+.-|+||
T Consensus       150 -~~~e~Sak~g~~v~~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (198)
T cd04142         150 -GYLECSAKYNWHILLLFKELLISATTRGRSTHPALRLQGALHRERCSIM  198 (198)
T ss_pred             -cEEEecCCCCCCHHHHHHHHHHHhhccCCCccHHHHHHHHHhhcCcccC
Confidence             79999999999999999999998887666543321    2223337765

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=5.7e-33  Score=194.73  Aligned_cols=162  Identities=31%  Similarity=0.539  Sum_probs=138.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      ||+++|.+|+|||||++++..+.+.+.+.+|.+..+ ...+.+++..+.+++||+||+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999999999999999987555 4566778888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhh-CC-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           87 LISKASYENVAKKWIPELRHY-AP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~-~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      +++++++... ..|+..+... .+ +.|+++|+||+|+.+...        .....+++..++.+++. +|+++||++|.
T Consensus        82 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~--------~~~~~~~~~~~~~~~~~-~~~e~Sa~~g~  151 (170)
T cd04108          82 LTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQ--------YALMEQDAIKLAAEMQA-EYWSVSALSGE  151 (170)
T ss_pred             CcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCcccc--------ccccHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            9999999998 7888876543 33 578999999999965321        11345667778888887 79999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 029144          165 NVKAVFDAAIKVVLQ  179 (198)
Q Consensus       165 ~i~~~~~~i~~~~~~  179 (198)
                      |++++|+.+++.+.+
T Consensus       152 ~v~~lf~~l~~~~~~  166 (170)
T cd04108         152 NVREFFFRVAALTFE  166 (170)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=7.4e-33  Score=194.03  Aligned_cols=165  Identities=21%  Similarity=0.303  Sum_probs=138.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCcccccee-EEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      +.+.+||+++|.+|+|||||++++..+.+. ..+.||.+..+. ..+.+++..+.+.+||++|++.+..++..+++++|+
T Consensus         1 ~~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~   80 (169)
T cd01892           1 QRNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDV   80 (169)
T ss_pred             CCeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence            357899999999999999999999999988 888999876654 456778888889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      +++|||++++.+++.+ ..|...+... .+.|+++|+||+|+.+...          ....+...++...+...++++||
T Consensus        81 ~llv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa  148 (169)
T cd01892          81 ACLVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQ----------RYEVQPDEFCRKLGLPPPLHFSS  148 (169)
T ss_pred             EEEEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEccccccccc----------ccccCHHHHHHHcCCCCCEEEEe
Confidence            9999999999999887 6777655322 3799999999999965432          33344566777777655799999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029144          161 KTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (198)
                      +++.|++++|..+++.+..
T Consensus       149 ~~~~~v~~lf~~l~~~~~~  167 (169)
T cd01892         149 KLGDSSNELFTKLATAAQY  167 (169)
T ss_pred             ccCccHHHHHHHHHHHhhC
Confidence            9999999999999998764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=1.3e-32  Score=192.77  Aligned_cols=163  Identities=29%  Similarity=0.611  Sum_probs=141.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            358999999999999999999999988777777765444 4556677778899999999999999998899999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |+|++++.++..+ ..|+..+.... ++.|+++|+||.|+.+...          ++.+++..++...+. +++++||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  150 (168)
T cd01866          83 VYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSAKT  150 (168)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 78888887654 6899999999999975443          677888888888887 799999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      +.|++++|.++++.+.+
T Consensus       151 ~~~i~~~~~~~~~~~~~  167 (168)
T cd01866         151 ASNVEEAFINTAKEIYE  167 (168)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988753

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=1.5e-32  Score=192.33  Aligned_cols=162  Identities=31%  Similarity=0.566  Sum_probs=141.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      .+||+++|.+|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||+++|..++..++++++++++||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            37999999999999999999999998888888888777777788888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |++++++++.. ..|...+....  .+.|+++++||+|+.+...          +..++...++..++..+++++||+++
T Consensus        81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~SA~~~  149 (168)
T cd04177          81 SVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQ----------VSREDGVSLSQQWGNVPFYETSARKR  149 (168)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCc----------cCHHHHHHHHHHcCCceEEEeeCCCC
Confidence            99999999998 67777666532  5899999999999976443          66677778888887448999999999


Q ss_pred             CCHHHHHHHHHHHHc
Q 029144          164 QNVKAVFDAAIKVVL  178 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~  178 (198)
                      .|++++|.+++..++
T Consensus       150 ~~i~~~f~~i~~~~~  164 (168)
T cd04177         150 TNVDEVFIDLVRQII  164 (168)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.2e-34  Score=189.12  Aligned_cols=165  Identities=31%  Similarity=0.630  Sum_probs=149.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..|||+++|...+|||||+-+++.+.|......|.... ..+.+.+.+....+.||||+||++|..+-+.++++++++++
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL   91 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL   91 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence            47899999999999999999999999988877777444 46677788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||++|+++|+.+ +.|...++... ..+-++||+||+|+.+++.          ++..++..++...|+ .|+++||++
T Consensus        92 VyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~----------Vt~qeAe~YAesvGA-~y~eTSAk~  159 (218)
T KOG0088|consen   92 VYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQ----------VTRQEAEAYAESVGA-LYMETSAKD  159 (218)
T ss_pred             EEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhh----------hhHHHHHHHHHhhch-hheeccccc
Confidence            9999999999999 99999998877 4678899999999988775          999999999999999 799999999


Q ss_pred             CCCHHHHHHHHHHHHcCCC
Q 029144          163 QQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~  181 (198)
                      +.||.++|..+.+.+++..
T Consensus       160 N~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  160 NVGISELFESLTAKMIEHS  178 (218)
T ss_pred             ccCHHHHHHHHHHHHHHHh
Confidence            9999999999999886654

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=9.4e-33  Score=199.77  Aligned_cols=169  Identities=30%  Similarity=0.588  Sum_probs=146.6

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCc
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~   79 (198)
                      |.....+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||++|++.+...+..+++++|
T Consensus         1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad   80 (210)
T PLN03108          1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA   80 (210)
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence            7777889999999999999999999999988777777775544 456677888889999999999999999989999999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144           80 VFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC  158 (198)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (198)
                      ++++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.....          ++.+++.++++..+. +|+++
T Consensus        81 ~~vlv~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~  148 (210)
T PLN03108         81 GALLVYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRA----------VSTEEGEQFAKEHGL-IFMEA  148 (210)
T ss_pred             EEEEEEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccC----------CCHHHHHHHHHHcCC-EEEEE
Confidence            99999999999999988 67777666544 5899999999999976543          778888999999887 79999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCC
Q 029144          159 SSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ||+++.|++++|.++++.+++..
T Consensus       149 Sa~~~~~v~e~f~~l~~~~~~~~  171 (210)
T PLN03108        149 SAKTAQNVEEAFIKTAAKIYKKI  171 (210)
T ss_pred             eCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999886543

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=9.1e-33  Score=192.15  Aligned_cols=158  Identities=32%  Similarity=0.600  Sum_probs=137.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.|...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988777777765443 455667788889999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      |+++++++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++...+. .++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (161)
T cd04113          81 DITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENGL-LFLETSALTGE  148 (161)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcCC-EEEEEECCCCC
Confidence            99999999998 77877776554 6899999999999976543          778888889998886 89999999999


Q ss_pred             CHHHHHHHHHHH
Q 029144          165 NVKAVFDAAIKV  176 (198)
Q Consensus       165 ~i~~~~~~i~~~  176 (198)
                      |++++|+++++.
T Consensus       149 ~i~~~~~~~~~~  160 (161)
T cd04113         149 NVEEAFLKCARS  160 (161)
T ss_pred             CHHHHHHHHHHh
Confidence            999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=7.3e-33  Score=200.35  Aligned_cols=165  Identities=34%  Similarity=0.564  Sum_probs=141.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+ ++..+.+++||+||++.|..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            58999999999999999999999988887777775443 444555 4667899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.+++.+ ..|+..+....  ...|+++|+||+|+.+...          +..++...++...+. +|+++||+
T Consensus        82 v~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak  149 (211)
T cd04111          82 VFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQ----------VTREEAEKLAKDLGM-KYIETSAR  149 (211)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHhCC-EEEEEeCC
Confidence            9999999999999 67887776554  3578899999999976543          778888899998886 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCc
Q 029144          162 TQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      +|.|++++|++|++.+.....
T Consensus       150 ~g~~v~e~f~~l~~~~~~~~~  170 (211)
T cd04111         150 TGDNVEEAFELLTQEIYERIK  170 (211)
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999998865533

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.5e-32  Score=191.76  Aligned_cols=161  Identities=35%  Similarity=0.601  Sum_probs=139.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+..++..+.+.+||+||++.+..++..++++++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            458999999999999999999999988777777776444 5566677877889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||++++.++..+ ..|+..+....+ +.|+++|+||+|+...+.          +..++.+.++...+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (165)
T cd01868          82 VYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTEEAKAFAEKNGL-SFIETSALD  149 (165)
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------CCHHHHHHHHHHcCC-EEEEEECCC
Confidence            9999999999998 788888877664 699999999999976543          677788888887776 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029144          163 QQNVKAVFDAAIKVV  177 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~  177 (198)
                      |.|++++|+++++.+
T Consensus       150 ~~~v~~l~~~l~~~i  164 (165)
T cd01868         150 GTNVEEAFKQLLTEI  164 (165)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998875

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=1.8e-32  Score=189.87  Aligned_cols=155  Identities=26%  Similarity=0.375  Sum_probs=128.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|+.|+|||||+.++..+.+.+.+.++. ..+...+.+++..+.+.+||++|++.     ..+++++|++++|||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d   74 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS   74 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence            589999999999999999999998877766553 44456778888889999999999975     245678999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      ++++.+|+.+ ..|+..+....  ++.|+++|+||+|+...        ..+.+..+++.++++..+...|++|||++|.
T Consensus        75 ~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~--------~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  145 (158)
T cd04103          75 LENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISES--------NPRVIDDARARQLCADMKRCSYYETCATYGL  145 (158)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhc--------CCcccCHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            9999999998 67888877664  57999999999998531        1123777888888887643379999999999


Q ss_pred             CHHHHHHHHHHH
Q 029144          165 NVKAVFDAAIKV  176 (198)
Q Consensus       165 ~i~~~~~~i~~~  176 (198)
                      ||+++|..+++.
T Consensus       146 ~i~~~f~~~~~~  157 (158)
T cd04103         146 NVERVFQEAAQK  157 (158)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999865

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=1.2e-32  Score=192.31  Aligned_cols=159  Identities=30%  Similarity=0.534  Sum_probs=136.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCc-ccccccccCCCcEEEEEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-NRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-~~~~~~~~~~~~~~i~v~d   86 (198)
                      ||+++|++|+|||||+++++.+.+.+.+.++....+.....+++..+.+.+||+||++.+ ...+..+++++|++++|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            689999999999999999999988888888887666677778888899999999999853 4556678899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           87 LISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      ++++.+++.+ ..|...+....   ++.|+++|+||+|+.+...          +..+++..++...+. +|+++||+++
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~  148 (165)
T cd04146          81 ITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAED  148 (165)
T ss_pred             CCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCCC
Confidence            9999999988 77877777653   4899999999999965443          677888888988887 7999999999


Q ss_pred             C-CHHHHHHHHHHHHc
Q 029144          164 Q-NVKAVFDAAIKVVL  178 (198)
Q Consensus       164 ~-~i~~~~~~i~~~~~  178 (198)
                      . |++++|..+++.+.
T Consensus       149 ~~~v~~~f~~l~~~~~  164 (165)
T cd04146         149 YDGVHSVFHELCREVR  164 (165)
T ss_pred             chhHHHHHHHHHHHHh
Confidence            4 99999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=2e-32  Score=201.75  Aligned_cols=162  Identities=26%  Similarity=0.418  Sum_probs=138.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|.+|+|||||+++++.+.+...+.+|..+.....+.+++..+.+.|||++|++.|..++..++.++|++|+|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            58999999999999999999999998888899887777778888989999999999999998888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhh----------CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           87 LISKASYENVAKKWIPELRHY----------APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~----------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      ++++++|+.+ ..|...+...          ..+.|+++|+||+|+.....          +..+++.+++.......++
T Consensus        81 v~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~~  149 (247)
T cd04143          81 LDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAYF  149 (247)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEEE
Confidence            9999999998 6776666532          24799999999999975433          6777777776544233799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++||++|.|++++|.+|++.+..
T Consensus       150 evSAktg~gI~elf~~L~~~~~~  172 (247)
T cd04143         150 EVSAKKNSNLDEMFRALFSLAKL  172 (247)
T ss_pred             EEeCCCCCCHHHHHHHHHHHhcc
Confidence            99999999999999999997744

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.1e-32  Score=200.08  Aligned_cols=163  Identities=31%  Similarity=0.572  Sum_probs=143.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|++|+|||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+||++|+++|..++..++++++++++
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            568999999999999999999999988777778776544 5667788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...          +..+++..++...+. +|+++||++
T Consensus        91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~----------~~~~~~~~l~~~~~~-~~~e~SA~~  158 (216)
T PLN03110         91 VYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRS----------VAEEDGQALAEKEGL-SFLETSALE  158 (216)
T ss_pred             EEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccC----------CCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999988 78888887765 4899999999999966543          677788888888887 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      |.|++++|+.+++.+..
T Consensus       159 g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        159 ATNVEKAFQTILLEIYH  175 (216)
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999987744

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=2.3e-32  Score=191.78  Aligned_cols=161  Identities=30%  Similarity=0.562  Sum_probs=139.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcc-cccccccCCCcEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFL   82 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~~~~i   82 (198)
                      +.+||+++|++|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||+++|. ..+..+++++|+++
T Consensus         1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i   80 (170)
T cd04115           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (170)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence            468999999999999999999999988877777775433 4566778888999999999999887 57888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      +|||+++++++..+ ..|+..+....  .+.|+++|+||+|+.....          +..+++..++...+. +|+++||
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa  148 (170)
T cd04115          81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQ----------VPTDLAQRFADAHSM-PLFETSA  148 (170)
T ss_pred             EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcC----------CCHHHHHHHHHHcCC-cEEEEec
Confidence            99999999999999 78888877654  5799999999999976553          677888888888876 7999999


Q ss_pred             CC---CCCHHHHHHHHHHHH
Q 029144          161 KT---QQNVKAVFDAAIKVV  177 (198)
Q Consensus       161 ~~---~~~i~~~~~~i~~~~  177 (198)
                      ++   +.+++++|..+++.+
T Consensus       149 ~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         149 KDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             cCCcCCCCHHHHHHHHHHHh
Confidence            99   899999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.7e-32  Score=196.20  Aligned_cols=155  Identities=26%  Similarity=0.477  Sum_probs=134.6

Q ss_pred             ECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCCh
Q 029144           12 VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK   90 (198)
Q Consensus        12 vG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~   90 (198)
                      +|.+|||||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.+||++|+++|..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999988888888886444 55567788889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHH
Q 029144           91 ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF  170 (198)
Q Consensus        91 ~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  170 (198)
                      .++..+ ..|+..+....++.|+++|+||+|+....           +..+. ..++...++ .|++|||++|.|++++|
T Consensus        81 ~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~F  146 (200)
T smart00176       81 VTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDRK-----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKPF  146 (200)
T ss_pred             HHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccc-----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHHH
Confidence            999998 78999898877899999999999996422           33333 356777777 79999999999999999


Q ss_pred             HHHHHHHcCC
Q 029144          171 DAAIKVVLQP  180 (198)
Q Consensus       171 ~~i~~~~~~~  180 (198)
                      .++++.+...
T Consensus       147 ~~l~~~i~~~  156 (200)
T smart00176      147 LWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHhc
Confidence            9999988654

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-33  Score=184.92  Aligned_cols=162  Identities=31%  Similarity=0.593  Sum_probs=146.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      -+||+++|..|+|||.|+++|..+-+++....|.+.. +-+++.+++..++++||||+|+++|++....+++.++++|+|
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            5799999999999999999999999988888888644 578889999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      ||+++.++|+-+ .+|+..++.+. ...--++|+||+|+.+.++          ++...+++|+..... .|+|+||++.
T Consensus        87 ydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drre----------vp~qigeefs~~qdm-yfletsakea  154 (213)
T KOG0095|consen   87 YDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRRE----------VPQQIGEEFSEAQDM-YFLETSAKEA  154 (213)
T ss_pred             EecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhh----------hhHHHHHHHHHhhhh-hhhhhcccch
Confidence            999999999988 89999999988 4566689999999988765          888888899888766 6889999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029144          164 QNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (198)
                      +|++.+|..++-.+..
T Consensus       155 ~nve~lf~~~a~rli~  170 (213)
T KOG0095|consen  155 DNVEKLFLDLACRLIS  170 (213)
T ss_pred             hhHHHHHHHHHHHHHH
Confidence            9999999998877654

>cd00157 Rho Rho (Ras homology) family

Probab=100.00  E-value=7.2e-32  Score=189.28  Aligned_cols=169  Identities=67%  Similarity=1.115  Sum_probs=143.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|.+|+|||||++++..+.+...+.++..+.....+..++..+.+.+||+||++.+...+...++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            68999999999999999999999987777888877777777788888999999999999998888888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC-CCCCccccHHHHHHHHHHcCCCEEEEeccCCCCC
Q 029144           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD-HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN  165 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (198)
                      ++++.++......|+..+....++.|+++|+||+|+.+....... ......+..+++.++...++..+|+++||++|.|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  160 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG  160 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence            999999998877888888887778999999999999875431000 0112234577788888888876899999999999


Q ss_pred             HHHHHHHHHH
Q 029144          166 VKAVFDAAIK  175 (198)
Q Consensus       166 i~~~~~~i~~  175 (198)
                      ++++|+++++
T Consensus       161 i~~l~~~i~~  170 (171)
T cd00157         161 VKEVFEEAIR  170 (171)
T ss_pred             HHHHHHHHhh
Confidence            9999999876

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=6.6e-32  Score=188.19  Aligned_cols=161  Identities=38%  Similarity=0.700  Sum_probs=139.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|++|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999999888776666665443 455667777789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      |++++.+++.+ ..|+..+..+. ++.|+++|+||+|+.+...          +..+.+..++...++ +++++||.++.
T Consensus        81 d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~~~  148 (164)
T smart00175       81 DITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQ----------VSREEAEAFAEEHGL-PFFETSAKTNT  148 (164)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccC----------CCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            99999999988 67888887765 6899999999999976443          677778888888887 79999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 029144          165 NVKAVFDAAIKVVLQ  179 (198)
Q Consensus       165 ~i~~~~~~i~~~~~~  179 (198)
                      |++++|+.+.+.+.+
T Consensus       149 ~i~~l~~~i~~~~~~  163 (164)
T smart00175      149 NVEEAFEELAREILK  163 (164)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999988753

Rab GTPases are implicated in vesicle trafficking.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4e-33  Score=184.81  Aligned_cols=167  Identities=31%  Similarity=0.535  Sum_probs=146.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ..++++++|.+-+|||+|++.|..+.+.+-..||.+.. +...+.+ ++..+++++|||+||++|++..+.+++|+-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            46899999999999999999999999999999999644 4555554 577899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA--PGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS  159 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (198)
                      +|||++|.++|+.+ +.|+.....+.  |..+ +.+|++|+|+...+.          ++.++++.++..++. .|+|+|
T Consensus        87 lvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRq----------Vt~EEaEklAa~hgM-~FVETS  154 (213)
T KOG0091|consen   87 LVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQ----------VTAEEAEKLAASHGM-AFVETS  154 (213)
T ss_pred             EEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhcc----------ccHHHHHHHHHhcCc-eEEEec
Confidence            99999999999999 88887777665  4444 478999999987765          999999999999999 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCCcc
Q 029144          160 SKTQQNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~~~~  183 (198)
                      |++|.|+++.|..+.+.++...++
T Consensus       155 ak~g~NVeEAF~mlaqeIf~~i~q  178 (213)
T KOG0091|consen  155 AKNGCNVEEAFDMLAQEIFQAIQQ  178 (213)
T ss_pred             ccCCCcHHHHHHHHHHHHHHHHhc
Confidence            999999999999999987654443

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=1.1e-31  Score=186.97  Aligned_cols=160  Identities=36%  Similarity=0.653  Sum_probs=139.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .+||+++|++|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999988776777776544 56677888889999999999999999998999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      +|+++++++... ..|+..+.... ++.|+++++||+|+.+...          .+.++...++...+. .++++||++|
T Consensus        81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (163)
T cd01860          81 YDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQ----------VSTEEAQEYADENGL-LFFETSAKTG  148 (163)
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCc----------CCHHHHHHHHHHcCC-EEEEEECCCC
Confidence            999999999998 78877777665 6899999999999975432          677788888888886 7999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029144          164 QNVKAVFDAAIKVV  177 (198)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (198)
                      .|+.++|+++++.+
T Consensus       149 ~~v~~l~~~l~~~l  162 (163)
T cd01860         149 ENVNELFTEIAKKL  162 (163)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=1e-31  Score=187.33  Aligned_cols=159  Identities=32%  Similarity=0.569  Sum_probs=134.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccccce-eEEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +||+++|.+|+|||||++++..+  .+++.+.++.+..+ .....++ +..+.+.+||+||++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  67778888886444 3444443 56789999999999999988899999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      +|||++++.++..+ ..|+..+....++.|+++|+||+|+.+...          +...+++.+....+. +++++||++
T Consensus        81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (164)
T cd04101          81 LVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAE----------VTDAQAQAFAQANQL-KFFKTSALR  148 (164)
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence            99999999999888 788888877666899999999999976543          566666677777776 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029144          163 QQNVKAVFDAAIKVV  177 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~  177 (198)
                      +.|++++|..+++.+
T Consensus       149 ~~gi~~l~~~l~~~~  163 (164)
T cd04101         149 GVGYEEPFESLARAF  163 (164)
T ss_pred             CCChHHHHHHHHHHh
Confidence            999999999999875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=100.00  E-value=9.1e-32  Score=190.42  Aligned_cols=177  Identities=31%  Similarity=0.527  Sum_probs=146.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      .||+++|.+|+|||||++++....+...+.++....+.....+++..+.+.+||+||+++|...+..++..+++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            58999999999999999999999888878888877777777788888889999999999999898899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           87 LISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      +++..+++.+ ..|...+... . .+.|+++|+||+|+...+.          +..++...++...+. +++++||+++.
T Consensus        82 ~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  149 (180)
T cd04137          82 VTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ----------VSTEEGKELAESWGA-AFLESSARENE  149 (180)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc----------cCHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence            9999999998 4544444433 2 4789999999999975432          555666777777776 79999999999


Q ss_pred             CHHHHHHHHHHHHcCCCcchHHhhccccCCcccC
Q 029144          165 NVKAVFDAAIKVVLQPPKNKKKKKRKAQKACSIL  198 (198)
Q Consensus       165 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~c~~~  198 (198)
                      |+.++|.++.+.+.......   ..+.+++|++|
T Consensus       150 gv~~l~~~l~~~~~~~~~~~---~~~~~~~~~~~  180 (180)
T cd04137         150 NVEEAFELLIEEIEKVENPL---DPGQKKKCSIM  180 (180)
T ss_pred             CHHHHHHHHHHHHHHhcCCC---CCCCCCCceeC
Confidence            99999999999887554433   23356679886

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=1.5e-31  Score=187.90  Aligned_cols=164  Identities=31%  Similarity=0.579  Sum_probs=138.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-ceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|++|+|||||++++.+..+...+.++.+. .....+.+++..+.+.+||+||++.+..++..+++++|+++++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999887777777653 34556678888899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           86 SLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      |++++.+++.. ..|...+....     .+.|+++|+||+|+.++..          ...++...+....+..+++++||
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa  149 (172)
T cd01862          81 DVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETSA  149 (172)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEEC
Confidence            99999999887 66766554433     2799999999999975332          56677778888887558999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCC
Q 029144          161 KTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ++|.|++++|+++.+.+....
T Consensus       150 ~~~~gv~~l~~~i~~~~~~~~  170 (172)
T cd01862         150 KEAINVEQAFETIARKALEQE  170 (172)
T ss_pred             CCCCCHHHHHHHHHHHHHhcc
Confidence            999999999999999887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.8e-31  Score=193.35  Aligned_cols=165  Identities=30%  Similarity=0.612  Sum_probs=139.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|.+|+|||||++++..+.+. .+.++.+..+ ...+.+++..+.+.+||+||+++|..++..+++++|++++
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl   91 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL   91 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            4689999999999999999999988764 4566665443 4456677778899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++++++.+...|...+....  .+.|+++|+||+|+.....          +..++...++...+. +|+++||+
T Consensus        92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~SAk  160 (211)
T PLN03118         92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD----------VSREEGMALAKEHGC-LFLECSAK  160 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            9999999999998556777666543  4689999999999976543          667778888888887 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 029144          162 TQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ++.|++++|.+|.+.+....
T Consensus       161 ~~~~v~~l~~~l~~~~~~~~  180 (211)
T PLN03118        161 TRENVEQCFEELALKIMEVP  180 (211)
T ss_pred             CCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999886543

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=1.9e-31  Score=185.43  Aligned_cols=159  Identities=36%  Similarity=0.622  Sum_probs=136.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|++|+|||||++++++..+...+.++.+ +.....+.+++..+.+.+||+||++.+..++..+++++|++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999988777667665 344666677887888999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      |++++.++..+ ..|+..+.... .+.|+++|+||+|+.+...          ...++...++...+. +++++||+++.
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (161)
T cd01861          81 DITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQ----------VSTEEGEKKAKELNA-MFIETSAKAGH  148 (161)
T ss_pred             ECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCc----------cCHHHHHHHHHHhCC-EEEEEeCCCCC
Confidence            99999999998 67777776554 3699999999999965443          677778888888886 79999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029144          165 NVKAVFDAAIKVV  177 (198)
Q Consensus       165 ~i~~~~~~i~~~~  177 (198)
                      |++++|.++.+.+
T Consensus       149 ~v~~l~~~i~~~l  161 (161)
T cd01861         149 NVKELFRKIASAL  161 (161)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998753

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=3.1e-31  Score=184.75  Aligned_cols=160  Identities=35%  Similarity=0.618  Sum_probs=139.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|.+|+|||||++++..+.+...+.++..+.+.....+++..+.+.+||+||++.+...+..+++.++++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            58999999999999999999999998888888887777777888888999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           87 LISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      ++++.++... ..|...+....  .+.|+++|+||+|+.+...          ...++...+...++. +++++||+++.
T Consensus        81 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~  148 (164)
T cd04139          81 ITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQ----------VSSEEAANLARQWGV-PYVETSAKTRQ  148 (164)
T ss_pred             CCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEeeCCCCC
Confidence            9999999988 55655555542  5899999999999976332          555667777788887 79999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029144          165 NVKAVFDAAIKVVL  178 (198)
Q Consensus       165 ~i~~~~~~i~~~~~  178 (198)
                      |++++|+++++.+.
T Consensus       149 gi~~l~~~l~~~~~  162 (164)
T cd04139         149 NVEKAFYDLVREIR  162 (164)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=3.3e-31  Score=192.92  Aligned_cols=159  Identities=25%  Similarity=0.416  Sum_probs=133.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccC-CCcEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR-GADVFLL   83 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~-~~~~~i~   83 (198)
                      +||+++|.+|+|||||++++..+.+. ..+.++.. +.....+.+++..+.+.+||+||++.  .....++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999988876 66666665 55567778888889999999999982  23344566 8999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++..+ ..|+..+....  .+.|+++|+||+|+.+...          +..+++..++...++ +|+++||+
T Consensus        79 V~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~SA~  146 (221)
T cd04148          79 VYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSRE----------VSVQEGRACAVVFDC-KFIETSAG  146 (221)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhccccce----------ecHHHHHHHHHHcCC-eEEEecCC
Confidence            9999999999988 77877776654  5899999999999976543          677778888888887 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      ++.|++++|+++++.+..
T Consensus       147 ~~~gv~~l~~~l~~~~~~  164 (221)
T cd04148         147 LQHNVDELLEGIVRQIRL  164 (221)
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999998854

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=6.3e-31  Score=182.78  Aligned_cols=159  Identities=35%  Similarity=0.657  Sum_probs=135.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|.+|+|||||+++++.+.+...+.++....+ .....+.+..+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999999988766666664433 455666777788999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      |++++++++.. ..|+..+.... .+.|+++|+||+|+.....          +..++...++...+. +++++|++++.
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~~~~~  148 (162)
T cd04123          81 DITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRV----------VSKSEAEEYAKSVGA-KHFETSAKTGK  148 (162)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeCCCCC
Confidence            99999999988 77887777665 4789999999999975433          566777778888887 79999999999


Q ss_pred             CHHHHHHHHHHHH
Q 029144          165 NVKAVFDAAIKVV  177 (198)
Q Consensus       165 ~i~~~~~~i~~~~  177 (198)
                      |++++++++.+.+
T Consensus       149 gi~~~~~~l~~~~  161 (162)
T cd04123         149 GIEELFLSLAKRM  161 (162)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998875

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=8e-31  Score=182.32  Aligned_cols=157  Identities=32%  Similarity=0.652  Sum_probs=135.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|++|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999999888776777776544 344556777789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |++++.+++.+ ..|+..+....  ++.|+++|+||+|+....           ...++...++...++ +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  147 (161)
T cd01863          81 DVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKTR  147 (161)
T ss_pred             ECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCCC
Confidence            99999999988 66888887764  589999999999997433           566778888888887 7999999999


Q ss_pred             CCHHHHHHHHHHH
Q 029144          164 QNVKAVFDAAIKV  176 (198)
Q Consensus       164 ~~i~~~~~~i~~~  176 (198)
                      .|++++++.+++.
T Consensus       148 ~gi~~~~~~~~~~  160 (161)
T cd01863         148 DGVQQAFEELVEK  160 (161)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=2.2e-31  Score=189.06  Aligned_cols=163  Identities=36%  Similarity=0.617  Sum_probs=150.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|.+|+|||+|..+|..+.+.+.|.||..+.+...+.+++..+.+.|+||+|++.|..+...++++++++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |+++++.||+.+ ..+...+.+. . ...|+++|+||+|+...+.          ++.++++.++..+++ +|+|+||+.
T Consensus        82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~----------V~~eeg~~la~~~~~-~f~E~Sak~  149 (196)
T KOG0395|consen   82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQ----------VSEEEGKALARSWGC-AFIETSAKL  149 (196)
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhccc----------cCHHHHHHHHHhcCC-cEEEeeccC
Confidence            999999999999 6776776332 2 4789999999999987655          999999999999999 599999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      +.+++++|..+++.+-.
T Consensus       150 ~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  150 NYNVDEVFYELVREIRL  166 (196)
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999998765

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=1.2e-33  Score=186.55  Aligned_cols=166  Identities=36%  Similarity=0.606  Sum_probs=146.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEEC---------CeEEEEEEEeCCCccCccccccccc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD---------GSTVNLGLWDTAGQEDYNRLRPLSY   75 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~---------~~~~~l~i~D~~G~~~~~~~~~~~~   75 (198)
                      -+|.+.+|.+|+||||++.++..+.+......|.+-.+ .+.+.++         +..+.+++|||+||++|+++...++
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf   88 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF   88 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence            46889999999999999999999999988888886555 3333332         3569999999999999999999999


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144           76 RGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                      +.|=+++++||+++..||-.+ ..|+.+++.+.  ++.-+|+++||+|+.+.+.          ++.+++..++++++. 
T Consensus        89 RDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~----------Vs~~qa~~La~kygl-  156 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRV----------VSEDQAAALADKYGL-  156 (219)
T ss_pred             HhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhh----------hhHHHHHHHHHHhCC-
Confidence            999999999999999999999 88999888765  7899999999999988775          999999999999999 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHcCCCcc
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  183 (198)
                      ||||+||-+|.|+++..+.+.+.++++.++
T Consensus       157 PYfETSA~tg~Nv~kave~LldlvM~Rie~  186 (219)
T KOG0081|consen  157 PYFETSACTGTNVEKAVELLLDLVMKRIEQ  186 (219)
T ss_pred             CeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999988888765544

>cd01893 Miro1 Miro1 subfamily

Probab=99.98  E-value=1.7e-30  Score=181.60  Aligned_cols=164  Identities=30%  Similarity=0.431  Sum_probs=128.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|.+|+|||||++++..+.++..+.++ ...+.....+++..+.+.+||+||++.+...+...+..+|++++|||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS   79 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence            48999999999999999999999887664433 33334444556677899999999998887777777899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC-CCEEEEeccCCCCC
Q 029144           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG-APVYIECSSKTQQN  165 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~  165 (198)
                      ++++.+++.+...|...+....++.|+++|+||+|+.+...        .....++...+..... ..+++++||+++.|
T Consensus        80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  151 (166)
T cd01893          80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSS--------QAGLEEEMLPIMNEFREIETCVECSAKTLIN  151 (166)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc--------hhHHHHHHHHHHHHHhcccEEEEeccccccC
Confidence            99999999975678888877667899999999999976432        0001223333333332 23799999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 029144          166 VKAVFDAAIKVVLQ  179 (198)
Q Consensus       166 i~~~~~~i~~~~~~  179 (198)
                      ++++|..+.+.+.+
T Consensus       152 v~~lf~~~~~~~~~  165 (166)
T cd01893         152 VSEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999998765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04114 Rab30 Rab30 subfamily

Probab=99.98  E-value=2.9e-30  Score=180.86  Aligned_cols=165  Identities=30%  Similarity=0.581  Sum_probs=136.6

Q ss_pred             CCC-CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCC
Q 029144            1 MSA-SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA   78 (198)
Q Consensus         1 m~~-~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~   78 (198)
                      |.+ ...++|+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.|...+..+++.+
T Consensus         1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   80 (169)
T cd04114           1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (169)
T ss_pred             CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence            664 4568999999999999999999998877666556654 33344566788888899999999999999888999999


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144           79 DVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE  157 (198)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (198)
                      |++++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...          +..+....+...... ++++
T Consensus        81 d~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~----------i~~~~~~~~~~~~~~-~~~~  148 (169)
T cd04114          81 NALILTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERRE----------VSQQRAEEFSDAQDM-YYLE  148 (169)
T ss_pred             CEEEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEE
Confidence            999999999999999888 67887776655 4799999999999976543          555666677766665 7999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 029144          158 CSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      +||++|.|++++|+++.+.+
T Consensus       149 ~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         149 TSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             eeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd00876 Ras Ras family

Probab=99.97  E-value=1.8e-30  Score=180.12  Aligned_cols=157  Identities=36%  Similarity=0.669  Sum_probs=136.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   87 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (198)
                      ||+++|++|+|||||++++....+...+.++........+..++..+.+.+||+||++.+...+..+++.+|++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            68999999999999999999988888888888877777777787778999999999999998888999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCC
Q 029144           88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN  165 (198)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (198)
                      ++++++... ..|...+....  .+.|+++|+||+|+.+...          +..+++..++..++. +++++||+++.|
T Consensus        81 ~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~S~~~~~~  148 (160)
T cd00876          81 TDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQ----------VSKEEGKALAKEWGC-PFIETSAKDNIN  148 (160)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCcccccce----------ecHHHHHHHHHHcCC-cEEEeccCCCCC
Confidence            999999988 55555555544  4899999999999987443          677888888888886 799999999999


Q ss_pred             HHHHHHHHHHH
Q 029144          166 VKAVFDAAIKV  176 (198)
Q Consensus       166 i~~~~~~i~~~  176 (198)
                      ++++|++|.+.
T Consensus       149 i~~l~~~l~~~  159 (160)
T cd00876         149 IDEVFKLLVRE  159 (160)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=6e-31  Score=184.15  Aligned_cols=155  Identities=17%  Similarity=0.221  Sum_probs=121.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.+|+|||||++++..+.+.. +.||.+..+. ....  ..+.+.+||+||++++...+..+++++|++++
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE-EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            456899999999999999999998877653 5666654443 2233  34788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-----cCCCEEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-----IGAPVYIE  157 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  157 (198)
                      |||++++.++......|...+... .++.|+++|+||+|+.+.            +..++++.....     ..+ .+++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~  149 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA------------MKPHEIQEKLGLTRIRDRNW-YVQP  149 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC------------CCHHHHHHHcCCCccCCCcE-EEEE
Confidence            999999999988855455555443 357999999999999642            445555554421     223 5899


Q ss_pred             eccCCCCCHHHHHHHHHH
Q 029144          158 CSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~  175 (198)
                      +||++|.|++++|++|.+
T Consensus       150 ~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         150 SCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             eeCCCCCChHHHHHHHhc
Confidence            999999999999999865

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.97  E-value=1.4e-30  Score=184.74  Aligned_cols=170  Identities=20%  Similarity=0.318  Sum_probs=128.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ..+||+++|.+|+|||||++++..+.+... .+|.+... ...+.. ++..+.+.+||+||++++...|..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            368999999999999999999998877654 46554333 222333 345688999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH--HcC---CCEE
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK--LIG---APVY  155 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~  155 (198)
                      +|+|++++.++... ..|+..+....  .+.|+++|+||+|+.+.            ...++...+..  ...   ..++
T Consensus        81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~~  147 (183)
T cd04152          81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNA------------LSVSEVEKLLALHELSASTPWHV  147 (183)
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCcccc------------CCHHHHHHHhCccccCCCCceEE
Confidence            99999999988887 56665555432  47999999999999642            33344444332  111   1257


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCCCcchHHhh
Q 029144          156 IECSSKTQQNVKAVFDAAIKVVLQPPKNKKKKK  188 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~  188 (198)
                      +++||+++.|++++|++|++.+...++..+.++
T Consensus       148 ~~~SA~~~~gi~~l~~~l~~~l~~~~~~~~~~~  180 (183)
T cd04152         148 QPACAIIGEGLQEGLEKLYEMILKRRKMLRQQK  180 (183)
T ss_pred             EEeecccCCCHHHHHHHHHHHHHHHHhhhhhhh
Confidence            899999999999999999999876555544443

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=1.6e-30  Score=184.04  Aligned_cols=161  Identities=14%  Similarity=0.187  Sum_probs=122.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.++||||||++++..+.+. .+.||.+..+. .+..+  .+.+.+||+||++.+..+|..+++++|++|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~-~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            35689999999999999999999987775 45677664443 23333  4778899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC----CCEEEEe
Q 029144           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG----APVYIEC  158 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  158 (198)
                      |||+++++++.....++...+... .++.|+++|+||+|+.+.            ...++......-..    ...++++
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~l~l~~~~~~~~~~~~~  158 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA------------MNAAEITDKLGLHSLRQRHWYIQST  158 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC------------CCHHHHHHHhCccccCCCceEEEec
Confidence            999999999988844444444432 258999999999999653            23333333221111    1135689


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCC
Q 029144          159 SSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ||++|+|++++|++|++.+.++
T Consensus       159 Sa~~g~gv~e~~~~l~~~~~~~  180 (181)
T PLN00223        159 CATSGEGLYEGLDWLSNNIANK  180 (181)
T ss_pred             cCCCCCCHHHHHHHHHHHHhhc
Confidence            9999999999999999887653

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.97  E-value=9e-30  Score=182.78  Aligned_cols=161  Identities=25%  Similarity=0.413  Sum_probs=133.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   87 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (198)
                      ||+++|.+|+|||||+++++.+.+...+.++........+.+++..+.+.+||+||+..|..++..++.++|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            68999999999999999999999888888887666666777888888999999999999998888899999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-HcCCCEEEEeccCCCC
Q 029144           88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-LIGAPVYIECSSKTQQ  164 (198)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~  164 (198)
                      +++.+++.+ ..|...+....  .+.|+++|+||+|+.+...         .+..++..+... ..+. +++++||++|.
T Consensus        81 ~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---------~v~~~~~~~~~~~~~~~-~~~~~Sa~~g~  149 (198)
T cd04147          81 DDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEER---------QVPAKDALSTVELDWNC-GFVETSAKDNE  149 (198)
T ss_pred             CCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEccccccccc---------cccHHHHHHHHHhhcCC-cEEEecCCCCC
Confidence            999999998 67776666544  4799999999999965311         144444444433 3444 68999999999


Q ss_pred             CHHHHHHHHHHHHcC
Q 029144          165 NVKAVFDAAIKVVLQ  179 (198)
Q Consensus       165 ~i~~~~~~i~~~~~~  179 (198)
                      |++++|+++++.+..
T Consensus       150 gv~~l~~~l~~~~~~  164 (198)
T cd04147         150 NVLEVFKELLRQANL  164 (198)
T ss_pred             CHHHHHHHHHHHhhc
Confidence            999999999998754

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.97  E-value=4.5e-31  Score=184.11  Aligned_cols=152  Identities=17%  Similarity=0.236  Sum_probs=122.5

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECC
Q 029144            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI   88 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   88 (198)
                      |+++|.+|+|||||++++.++.+...+.||.+...   ..++...+.+.+||+||++.|...|..+++++|++++|||++
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t   78 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSA   78 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECC
Confidence            79999999999999999999888888888876433   234445588899999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccH----HHHHHHHHHcCCCEEEEeccCC--
Q 029144           89 SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITT----AQGEELRKLIGAPVYIECSSKT--  162 (198)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~--  162 (198)
                      ++.++... ..|+..+....+++|+++|+||+|+.....          +..    .++..++.+.++ .++++||++  
T Consensus        79 ~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~~  146 (164)
T cd04162          79 DSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARS----------VQEIHKELELEPIARGRRW-ILQGTSLDDDG  146 (164)
T ss_pred             CHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----------HHHHHHHhCChhhcCCCce-EEEEeeecCCC
Confidence            99999888 566666654447899999999999965431          211    123455566666 688888888  


Q ss_pred             ----CCCHHHHHHHHHH
Q 029144          163 ----QQNVKAVFDAAIK  175 (198)
Q Consensus       163 ----~~~i~~~~~~i~~  175 (198)
                          ++|++++|+.++.
T Consensus       147 s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         147 SPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             ChhHHHHHHHHHHHHhc
Confidence                9999999998874

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd00154 Rab Rab family

Probab=99.97  E-value=5.9e-30  Score=176.98  Aligned_cols=157  Identities=39%  Similarity=0.763  Sum_probs=135.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|++|+|||||++++.++.+...+.+|.+..+ ......++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999999988877667765443 455666777789999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      |+++++++..+ ..|+..+.... ++.|+++++||+|+..+..          ...++...++...+. +++++||+++.
T Consensus        81 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~~  148 (159)
T cd00154          81 DITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTGE  148 (159)
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCCC
Confidence            99999999988 67888888776 6899999999999973332          677888888888776 79999999999


Q ss_pred             CHHHHHHHHHH
Q 029144          165 NVKAVFDAAIK  175 (198)
Q Consensus       165 ~i~~~~~~i~~  175 (198)
                      |+++++++|.+
T Consensus       149 ~i~~~~~~i~~  159 (159)
T cd00154         149 NVEELFQSLAE  159 (159)
T ss_pred             CHHHHHHHHhC
Confidence            99999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=7e-30  Score=179.92  Aligned_cols=157  Identities=16%  Similarity=0.180  Sum_probs=120.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|.+|+|||||++++..+.+. .+.||.+..+. .....  .+.+.+||+||++.+...|..+++++|++|+|
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v   87 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE-TVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV   87 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            4699999999999999999999877764 45677765443 23333  47788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-----HcCCCEEEEe
Q 029144           85 FSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-----LIGAPVYIEC  158 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  158 (198)
                      ||++++.+++.....|...+... .++.|+++|+||+|+.+.            .+.++......     ...+ .++++
T Consensus        88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~  154 (175)
T smart00177       88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA------------MKAAEITEKLGLHSIRDRNW-YIQPT  154 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC------------CCHHHHHHHhCccccCCCcE-EEEEe
Confidence            99999999998844444444433 357999999999999653            22223222211     1122 46789


Q ss_pred             ccCCCCCHHHHHHHHHHHHc
Q 029144          159 SSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      ||++|.|++++|.+|.+.+.
T Consensus       155 Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      155 CATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             eCCCCCCHHHHHHHHHHHhc
Confidence            99999999999999988753

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=5.7e-30  Score=177.72  Aligned_cols=152  Identities=15%  Similarity=0.215  Sum_probs=116.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|.+|+|||||++++..+.+. .+.||.+..+. .+...  .+.+.+||+||++++...|..+++++|++++|||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            58999999999999999999888776 46677665442 23333  4778899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHH-HHHHH----HcCCCEEEEecc
Q 029144           87 LISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG-EELRK----LIGAPVYIECSS  160 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~Sa  160 (198)
                      ++++.++......|...+... ..+.|+++++||+|+.+.            ...++. ..+..    ..++ .++++||
T Consensus        77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~~~Sa  143 (159)
T cd04150          77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA------------MSAAEVTDKLGLHSLRNRNW-YIQATCA  143 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCccccCCCCE-EEEEeeC
Confidence            999999998854455444432 247899999999999642            222222 22211    1222 4779999


Q ss_pred             CCCCCHHHHHHHHHH
Q 029144          161 KTQQNVKAVFDAAIK  175 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~  175 (198)
                      ++|.|++++|++|.+
T Consensus       144 k~g~gv~~~~~~l~~  158 (159)
T cd04150         144 TSGDGLYEGLDWLSN  158 (159)
T ss_pred             CCCCCHHHHHHHHhc
Confidence            999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04158 ARD1 ARD1 subfamily

Probab=99.97  E-value=7.7e-30  Score=178.81  Aligned_cols=157  Identities=16%  Similarity=0.256  Sum_probs=122.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   87 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (198)
                      ||+++|.+|+|||||++++..+.+.. +.+|.+..+. .+...  .+.+.+||+||++.+...|..+++++|++++|+|+
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~-~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   76 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE-TVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS   76 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE-EEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence            68999999999999999999987654 6677654443 23343  47788999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC-----CCEEEEecc
Q 029144           88 ISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG-----APVYIECSS  160 (198)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa  160 (198)
                      +++.++... ..|+..+...  ..+.|+++|+||+|+.+.            ++.+++.+++...+     ...++++||
T Consensus        77 s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  143 (169)
T cd04158          77 SHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCDA  143 (169)
T ss_pred             CcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCcC
Confidence            999999988 5555544432  246899999999999642            45566666554221     115789999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCC
Q 029144          161 KTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ++|.|++++|++|++.+....
T Consensus       144 ~~g~gv~~~f~~l~~~~~~~~  164 (169)
T cd04158         144 RSGMGLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             CCCCCHHHHHHHHHHHHhhcc
Confidence            999999999999998776543

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=7.4e-30  Score=180.77  Aligned_cols=160  Identities=18%  Similarity=0.232  Sum_probs=121.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ++.+||+++|++|+|||||++++..+.+.. +.||.+..+. .+...  .+.+.+||+||++.+...|..+++++|++|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE-TVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE-EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            456899999999999999999998877764 5677665443 23333  4788899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-H----HcCCCEEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-K----LIGAPVYIE  157 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~  157 (198)
                      |+|++++.++......+...+... ..+.|+++|+||.|+.+.            ...++..... .    ...+ .+++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~-~~~~  157 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA------------MSTTEVTEKLGLHSVRQRNW-YIQG  157 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC------------CCHHHHHHHhCCCcccCCcE-EEEe
Confidence            999999999998855555444432 257899999999999653            2222222211 1    1122 4678


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      +||++|.|++++|++|.+.+.+.
T Consensus       158 ~Sa~tg~gv~e~~~~l~~~i~~~  180 (182)
T PTZ00133        158 CCATTAQGLYEGLDWLSANIKKS  180 (182)
T ss_pred             eeCCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999877654

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=2.9e-32  Score=175.09  Aligned_cols=161  Identities=34%  Similarity=0.629  Sum_probs=142.1

Q ss_pred             EEECCCCCCHHHHHHHHhhCCCC-CCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144           10 VTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   87 (198)
Q Consensus        10 ~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (198)
                      +++|.+++|||.|+-++..+.+. .+..+|.+-.+ .+.+..++..+.+++|||+||++|++....+++.+|+.+++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            47999999999999888887764 34555665444 45567889999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCH
Q 029144           88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNV  166 (198)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (198)
                      .|..||+.. +.|+..+..+. ....+.+++||+|+.+++.          +..++.+.++..++. ||.|+||++|.|+
T Consensus        81 ankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~----------v~~ddg~kla~~y~i-pfmetsaktg~nv  148 (192)
T KOG0083|consen   81 ANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERA----------VKRDDGEKLAEAYGI-PFMETSAKTGFNV  148 (192)
T ss_pred             ccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhc----------cccchHHHHHHHHCC-CceeccccccccH
Confidence            999999999 89999999887 5788899999999988765          888999999999999 7999999999999


Q ss_pred             HHHHHHHHHHHcCCCc
Q 029144          167 KAVFDAAIKVVLQPPK  182 (198)
Q Consensus       167 ~~~~~~i~~~~~~~~~  182 (198)
                      +-.|..|++.+.+...
T Consensus       149 d~af~~ia~~l~k~~~  164 (192)
T KOG0083|consen  149 DLAFLAIAEELKKLKM  164 (192)
T ss_pred             hHHHHHHHHHHHHhcc
Confidence            9999999998866444

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=7.6e-29  Score=180.18  Aligned_cols=166  Identities=26%  Similarity=0.473  Sum_probs=138.9

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      .....+||+++|++|+|||||+++++.+.+...+.+|.+..+. ..+..++..+.+.+||++|++.|...+..++.++++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            4556899999999999999999999998888888888865543 334457788999999999999999888889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      +++|||+++..++..+ ..|+..+....++.|+++++||+|+.+..           ...+ ...++...+. .++++||
T Consensus        85 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~-----------~~~~-~~~~~~~~~~-~~~e~Sa  150 (215)
T PTZ00132         85 AIIMFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQ-----------VKAR-QITFHRKKNL-QYYDISA  150 (215)
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCcccc-----------CCHH-HHHHHHHcCC-EEEEEeC
Confidence            9999999999999988 78888887767789999999999986432           2222 3356666776 7999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCC
Q 029144          161 KTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ++|.|+++.|.+|++.+....
T Consensus       151 ~~~~~v~~~f~~ia~~l~~~p  171 (215)
T PTZ00132        151 KSNYNFEKPFLWLARRLTNDP  171 (215)
T ss_pred             CCCCCHHHHHHHHHHHHhhcc
Confidence            999999999999999886543

>cd04154 Arl2 Arl2 subfamily

Probab=99.97  E-value=3.6e-29  Score=176.05  Aligned_cols=154  Identities=18%  Similarity=0.275  Sum_probs=118.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.++|+++|++|+|||||++++....+ ..+.+|.+.. ...+.+++  +.+.+||+||++.+...+..+++++|++++
T Consensus        12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQ-IKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            4578999999999999999999998754 3455665532 23344554  778899999999998889999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHH-hhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-----HcCCCEEE
Q 029144           84 AFSLISKASYENVAKKWIPEL-RHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-----LIGAPVYI  156 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~-~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  156 (198)
                      |+|++++.++... ..|+..+ ... ..+.|+++|+||+|+.+.            ...+++..+..     ..+. +++
T Consensus        88 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~-~~~  153 (173)
T cd04154          88 VVDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGA------------LSEEEIREALELDKISSHHW-RIQ  153 (173)
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccC------------CCHHHHHHHhCccccCCCce-EEE
Confidence            9999999999887 4454444 322 268999999999999653            23344444432     2233 799


Q ss_pred             EeccCCCCCHHHHHHHHHH
Q 029144          157 ECSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~  175 (198)
                      ++||++|.|++++|+++++
T Consensus       154 ~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         154 PCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             eccCCCCcCHHHHHHHHhc
Confidence            9999999999999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-29  Score=164.16  Aligned_cols=164  Identities=31%  Similarity=0.600  Sum_probs=147.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+|.+++|.-|+|||+|+.+|...++..+..-|.+..+ ...+.+.+..+.+++||++|+++|+...+.+++++.+.++
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            578999999999999999999999999888888887666 5567789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||++.+.++..+ ..|+...+... |+..+++++||.|+...+.          ++.+++.+|+.+.|. .|+++||++
T Consensus        90 vyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrd----------v~yeeak~faeengl-~fle~sakt  157 (215)
T KOG0097|consen   90 VYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRD----------VTYEEAKEFAEENGL-MFLEASAKT  157 (215)
T ss_pred             EEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhccc----------CcHHHHHHHHhhcCe-EEEEecccc
Confidence            9999999999988 77777666654 8999999999999987766          999999999999998 799999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029144          163 QQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (198)
                      |.++++.|-...+.++..
T Consensus       158 g~nvedafle~akkiyqn  175 (215)
T KOG0097|consen  158 GQNVEDAFLETAKKIYQN  175 (215)
T ss_pred             cCcHHHHHHHHHHHHHHh
Confidence            999999998777776543

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=3e-28  Score=171.52  Aligned_cols=154  Identities=20%  Similarity=0.276  Sum_probs=118.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      ..++|+++|.+|+|||||++++..+.+.. +.+|.+..+. ...+++  +.+.+||+||++.+...|..+++++|++++|
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE-EIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE-EEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            46899999999999999999999887765 4566654442 334444  6788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHH-HHHH----HHcCCCEEEEe
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG-EELR----KLIGAPVYIEC  158 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~  158 (198)
                      +|+++++++......+...+.... .+.|+++++||+|+...            .+.++. +.+.    ...+. +++++
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~------------~~~~~i~~~l~~~~~~~~~~-~~~~~  156 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA------------MTPAEISESLGLTSIRDHTW-HIQGC  156 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEEec
Confidence            999999988877444544444322 57999999999999652            222332 2221    22333 68999


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 029144          159 SSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~  175 (198)
                      ||++|.|++++|++|.+
T Consensus       157 SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         157 CALTGEGLPEGLDWIAS  173 (174)
T ss_pred             ccCCCCCHHHHHHHHhc
Confidence            99999999999999875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.96  E-value=1.6e-28  Score=170.77  Aligned_cols=151  Identities=19%  Similarity=0.186  Sum_probs=113.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC-CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +|+++|.+|+|||||++++.... ....+.||.+.... ....  ..+.+.+||+||++.+..+|..+++++|++++|+|
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   77 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE-SFEK--GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID   77 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE-EEEE--CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence            58999999999999999999875 35566777654332 2223  34778899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhh----CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-----HcCCCEEEE
Q 029144           87 LISKASYENVAKKWIPELRHY----APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-----LIGAPVYIE  157 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~----~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  157 (198)
                      ++++.++... ..|+..+...    ..+.|+++|+||+|+.+..            ..++......     .... .+++
T Consensus        78 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~-~~~~  143 (162)
T cd04157          78 SSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPW-HIFA  143 (162)
T ss_pred             CCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceE-EEEE
Confidence            9999988777 5555544332    1479999999999996532            1222222111     1122 5899


Q ss_pred             eccCCCCCHHHHHHHHHH
Q 029144          158 CSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~  175 (198)
                      +||++|.|++++|++|.+
T Consensus       144 ~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         144 SNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             eeCCCCCchHHHHHHHhc
Confidence            999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=9.9e-28  Score=171.57  Aligned_cols=157  Identities=22%  Similarity=0.336  Sum_probs=124.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEEC-----CeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-----GSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      +||+++|..|+|||||++++..+.+.+.+.+|.+..+ ...+.++     +..+.+.+||++|++.|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999999999888888886444 3334443     567899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhh-------------------C-CCCCEEEEeecCCcccccccccCCCCCccccH
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHY-------------------A-PGVPIILVGTKLDLRDDKQFLADHPGAVPITT  140 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~  140 (198)
                      +|+|||++++.+++.+ ..|+..+...                   . ++.|+++|+||+|+.+.+.          +..
T Consensus        81 iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~----------~~~  149 (202)
T cd04102          81 IILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE----------SSG  149 (202)
T ss_pred             EEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc----------cch
Confidence            9999999999999999 7888877653                   1 3689999999999976532          333


Q ss_pred             H----HHHHHHHHcCCCEEEEeccCCCC----------CHHHHHHHHHH
Q 029144          141 A----QGEELRKLIGAPVYIECSSKTQQ----------NVKAVFDAAIK  175 (198)
Q Consensus       141 ~----~~~~~~~~~~~~~~~~~Sa~~~~----------~i~~~~~~i~~  175 (198)
                      +    ....++.+.++ +.++.++.+..          .+..+|+.+++
T Consensus       150 ~~~~~~~~~ia~~~~~-~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  197 (202)
T cd04102         150 NLVLTARGFVAEQGNA-EEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE  197 (202)
T ss_pred             HHHhhHhhhHHHhcCC-ceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence            2    34467788888 57778887653          34555555554

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00879 Sar1 Sar1 subfamily

Probab=99.96  E-value=8e-28  Score=171.65  Aligned_cols=158  Identities=17%  Similarity=0.268  Sum_probs=121.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+..+|+++|++|+|||||++++.++.+. .+.+|..... ..+.+++  +.+.+||+||+..+...|..++++++++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~-~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS-EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            45789999999999999999999987763 4556654432 3445555  567799999999998888889999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc------------
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI------------  150 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  150 (198)
                      |+|+++..++......+...+.... .+.|+++++||+|+...            +..++.+.+....            
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~  160 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSLKV  160 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCcccccccccccccc
Confidence            9999999888877444444433222 57999999999999642            4555555554321            


Q ss_pred             ---CCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          151 ---GAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       151 ---~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                         ....+++|||++|+|++++|.++.+.+
T Consensus       161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             cCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence               112589999999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.96  E-value=1.9e-28  Score=171.38  Aligned_cols=157  Identities=20%  Similarity=0.254  Sum_probs=116.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   87 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (198)
                      +|+++|.+|+|||||++++.++ +...+.+|.+.. ...+..++  +.+++||+||++.+..+|..+++++|++++|||+
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~   76 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence            4899999999999999999876 666777777644 23344444  7788999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC-EEEEeccCCC-
Q 029144           88 ISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP-VYIECSSKTQ-  163 (198)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~-  163 (198)
                      +++.++..+ ..|+..+....  .+.|+++|+||+|+.+...      ....+....+..++.+.+.. .++++||++| 
T Consensus        77 s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~------~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~  149 (167)
T cd04161          77 SDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALL------GADVIEYLSLEKLVNENKSLCHIEPCSAIEGL  149 (167)
T ss_pred             CchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCC------HHHHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence            999999988 66666555432  5899999999999976431      00000000112233233332 5677999998 


Q ss_pred             -----CCHHHHHHHHHH
Q 029144          164 -----QNVKAVFDAAIK  175 (198)
Q Consensus       164 -----~~i~~~~~~i~~  175 (198)
                           .|+++.|+||.+
T Consensus       150 ~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         150 GKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             CCccccCHHHHHHHHhc
Confidence                 899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.96  E-value=1e-27  Score=168.76  Aligned_cols=158  Identities=22%  Similarity=0.343  Sum_probs=124.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ..+.++|+++|..|+||||+++++..+.... ..||.+... ..+.+++  +.+.+||.+|+..++..|..++.++|++|
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence            4788999999999999999999998776433 556655443 3344555  66789999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH------cCCCEE
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL------IGAPVY  155 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  155 (198)
                      ||+|.++.+.+.+....+...+.... .++|++|++||+|+.+.            .+.++.......      ..+ .+
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~------------~~~~~i~~~l~l~~l~~~~~~-~v  153 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA------------MSEEEIKEYLGLEKLKNKRPW-SV  153 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS------------STHHHHHHHTTGGGTTSSSCE-EE
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc------------chhhHHHhhhhhhhcccCCce-EE
Confidence            99999999988888555555555433 68999999999999764            444444443321      222 57


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 029144          156 IECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      +.|||.+|+|+.+.++||.+.+
T Consensus       154 ~~~sa~~g~Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  154 FSCSAKTGEGVDEGLEWLIEQI  175 (175)
T ss_dssp             EEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EeeeccCCcCHHHHHHHHHhcC
Confidence            8899999999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04151 Arl1 Arl1 subfamily

Probab=99.96  E-value=7.3e-28  Score=167.01  Aligned_cols=151  Identities=17%  Similarity=0.225  Sum_probs=112.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   87 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (198)
                      ||+++|.+++|||||++++..+.+.. +.+|.+..+. .....  .+.+.+||+||++.+...|..+++.+|++++|+|+
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~   76 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE-TVTYK--NLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS   76 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE-EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence            68999999999999999998877653 4555544332 23333  46788999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-HHH----HHcCCCEEEEeccC
Q 029144           88 ISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-ELR----KLIGAPVYIECSSK  161 (198)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~Sa~  161 (198)
                      +++.++......|...++.. ..+.|+++|+||+|+.+..            ...+.. .+.    ...+. +++++||+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~~Sa~  143 (158)
T cd04151          77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRTW-SIFKTSAI  143 (158)
T ss_pred             CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCcE-EEEEeecc
Confidence            99988877645555444432 2579999999999996532            112221 111    11123 69999999


Q ss_pred             CCCCHHHHHHHHHH
Q 029144          162 TQQNVKAVFDAAIK  175 (198)
Q Consensus       162 ~~~~i~~~~~~i~~  175 (198)
                      +|.|++++|+++++
T Consensus       144 ~~~gi~~l~~~l~~  157 (158)
T cd04151         144 KGEGLDEGMDWLVN  157 (158)
T ss_pred             CCCCHHHHHHHHhc
Confidence            99999999999875

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.96  E-value=1.4e-27  Score=165.81  Aligned_cols=152  Identities=20%  Similarity=0.290  Sum_probs=113.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   87 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (198)
                      +|+++|.+|+|||||++++..+.+... .+|.+..+. .+.. +..+.+.+||+||++.+...+..+++++|++++|+|+
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~   77 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS   77 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence            589999999999999999999887643 455543332 2223 2347889999999999998888899999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH------HHHcCCCEEEEecc
Q 029144           88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL------RKLIGAPVYIECSS  160 (198)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa  160 (198)
                      +++.++......+...+.... .+.|+++|+||+|+...            ...++....      ....+. +++++||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~~-~~~~~Sa  144 (160)
T cd04156          78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA------------LTAEEITRRFKLKKYCSDRDW-YVQPCSA  144 (160)
T ss_pred             CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC------------cCHHHHHHHcCCcccCCCCcE-EEEeccc
Confidence            999988888444444433322 58999999999999642            122222221      112233 6899999


Q ss_pred             CCCCCHHHHHHHHHH
Q 029144          161 KTQQNVKAVFDAAIK  175 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~  175 (198)
                      ++|+|++++|++|.+
T Consensus       145 ~~~~gv~~~~~~i~~  159 (160)
T cd04156         145 VTGEGLAEAFRKLAS  159 (160)
T ss_pred             ccCCChHHHHHHHhc
Confidence            999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.96  E-value=2.2e-27  Score=165.91  Aligned_cols=151  Identities=21%  Similarity=0.335  Sum_probs=112.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC------CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTF------PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      +|+++|++|+|||||++++.....      ...+.+|....+ ..+.+++  ..+.+||+||++.+...+..+++.+|++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   77 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI-GTIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHAI   77 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce-EEEEECC--EEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            589999999999999999876432      223344443333 2344454  6778999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-------cCC
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-------IGA  152 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  152 (198)
                      ++|+|+++++++... ..|+..+... . .+.|+++|+||+|+.+.            ...++...+...       .+.
T Consensus        78 v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~------------~~~~~~~~~~~~~~~~~~~~~~  144 (167)
T cd04160          78 IYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDA------------LSVEEIKEVFQDKAEEIGRRDC  144 (167)
T ss_pred             EEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccC------------CCHHHHHHHhccccccccCCce
Confidence            999999999888887 4454444332 2 58999999999998653            233344433322       233


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHH
Q 029144          153 PVYIECSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~  175 (198)
                       +++++||++|.|+++++++|++
T Consensus       145 -~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         145 -LVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             -EEEEeeCCCCcCHHHHHHHHhc
Confidence             6999999999999999999875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=4.5e-27  Score=166.89  Aligned_cols=157  Identities=15%  Similarity=0.203  Sum_probs=118.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.++|+++|.+|+|||||++++.++.+.. +.||..... ..+.+++  +.+.+||+||++.+...|..++.++|++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS-EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            567999999999999999999999876543 344443322 2333444  677899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-----------cC
Q 029144           84 AFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-----------IG  151 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~  151 (198)
                      |+|+++++++......+...+... ..+.|+++|+||+|+...            ++.++..+....           .+
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~l~l~~~~~~~~~~~~~  158 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA------------ASEDELRYALGLTNTTGSKGKVGVR  158 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC------------CCHHHHHHHcCCCcccccccccCCc
Confidence            999999999888744444433322 258999999999999642            344444433211           12


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      ...++++||+++.|+++++++|.+.
T Consensus       159 ~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      159 PLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             eeEEEEeecccCCChHHHHHHHHhh
Confidence            3358999999999999999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.95  E-value=1e-26  Score=161.18  Aligned_cols=150  Identities=20%  Similarity=0.276  Sum_probs=114.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   87 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (198)
                      ||+++|.+|+|||||++++.+... ..+.++.+.... ...+.+  +.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~   76 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE-TVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS   76 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE-EEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence            689999999999999999998873 444555543332 233443  6788999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-----HcCCCEEEEecc
Q 029144           88 ISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-----LIGAPVYIECSS  160 (198)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa  160 (198)
                      ++++++... ..++..+...  ..+.|+++|+||+|+....            ..++......     .... +++++||
T Consensus        77 ~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa  142 (158)
T cd00878          77 SDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRRW-HIQPCSA  142 (158)
T ss_pred             CCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCcE-EEEEeeC
Confidence            999999888 4444443332  2589999999999997532            2223332222     1233 7999999


Q ss_pred             CCCCCHHHHHHHHHH
Q 029144          161 KTQQNVKAVFDAAIK  175 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~  175 (198)
                      ++|.|++++|++|..
T Consensus       143 ~~~~gv~~~~~~l~~  157 (158)
T cd00878         143 VTGDGLDEGLDWLLQ  157 (158)
T ss_pred             CCCCCHHHHHHHHhh
Confidence            999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.95  E-value=2.1e-29  Score=169.68  Aligned_cols=167  Identities=33%  Similarity=0.503  Sum_probs=152.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+|++++|..++||||++++++.+.|...|..|++..+ .....+....+.+.+||++|+++|+.....+++++.+.++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            678999999999999999999999999999999996555 5556677777888899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      ||+-+|..||+.. ..|.+.+......+|.++|-||+|+.++..          +..++++.++..... .++.+|++..
T Consensus        99 VFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~----------~~~~evE~lak~l~~-RlyRtSvked  166 (246)
T KOG4252|consen   99 VFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQ----------MDKGEVEGLAKKLHK-RLYRTSVKED  166 (246)
T ss_pred             EEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhh----------cchHHHHHHHHHhhh-hhhhhhhhhh
Confidence            9999999999999 899999999999999999999999998775          889999999999987 6899999999


Q ss_pred             CCHHHHHHHHHHHHcCCCcc
Q 029144          164 QNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~~~~~~  183 (198)
                      .|+.++|..+++.+....++
T Consensus       167 ~NV~~vF~YLaeK~~q~~kq  186 (246)
T KOG4252|consen  167 FNVMHVFAYLAEKLTQQKKQ  186 (246)
T ss_pred             hhhHHHHHHHHHHHHHHHHH
Confidence            99999999999988665444

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=1.6e-26  Score=173.13  Aligned_cols=146  Identities=19%  Similarity=0.315  Sum_probs=118.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEEC-------------CeEEEEEEEeCCCccCccc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-------------GSTVNLGLWDTAGQEDYNR   69 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~D~~G~~~~~~   69 (198)
                      ...+||+++|..|||||||+++|..+.+...+.+|.+..+ ...+.++             +..+.++|||++|++.|..
T Consensus        19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs   98 (334)
T PLN00023         19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD   98 (334)
T ss_pred             ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence            3578999999999999999999999998888888887554 3445553             2568899999999999999


Q ss_pred             ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-------------CCCCEEEEeecCCcccccccccCCCCCc
Q 029144           70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-------------PGVPIILVGTKLDLRDDKQFLADHPGAV  136 (198)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  136 (198)
                      ++..++++++++|+|||+++..+++.+ ..|+..+....             .++|++||+||+|+.+...    .....
T Consensus        99 L~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~----~r~~s  173 (334)
T PLN00023         99 CRSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEG----TRGSS  173 (334)
T ss_pred             hhHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccc----ccccc
Confidence            999999999999999999999999999 88988888652             2589999999999965320    00111


Q ss_pred             cccHHHHHHHHHHcCCCE
Q 029144          137 PITTAQGEELRKLIGAPV  154 (198)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~  154 (198)
                      .+..+++++++.+.++.+
T Consensus       174 ~~~~e~a~~~A~~~g~l~  191 (334)
T PLN00023        174 GNLVDAARQWVEKQGLLP  191 (334)
T ss_pred             cccHHHHHHHHHHcCCCc
Confidence            136789999999987644

>PTZ00099 rab6; Provisional

Probab=99.95  E-value=3.6e-26  Score=160.66  Aligned_cols=143  Identities=30%  Similarity=0.510  Sum_probs=121.9

Q ss_pred             CCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhh
Q 029144           29 NTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY  107 (198)
Q Consensus        29 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  107 (198)
                      +.|.+.+.+|.+..+ ...+.+++..+.+.||||||+++|..++..+++++|++|+|||++++.+|+.+ ..|+..+...
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~   81 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE   81 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence            456778889987555 56678888899999999999999999999999999999999999999999998 6787776554


Q ss_pred             C-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCCCcc
Q 029144          108 A-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       108 ~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  183 (198)
                      . ++.|+++|+||+|+.+...          +..+++..++..++. .|+++||++|.|++++|.+|++.+......
T Consensus        82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence            4 6789999999999975433          677888888888887 799999999999999999999998664433

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.94  E-value=6.5e-26  Score=150.65  Aligned_cols=160  Identities=18%  Similarity=0.272  Sum_probs=127.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      .+++++|+++|..|+|||||+++|.+.. .+...||.+..+.. ..+++  +.+++||.+||..+++.|++++...|++|
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Ikt-l~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKT-LEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEE-EEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            3568999999999999999999998876 44455666544433 33444  78889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHH------HHHHHHHHcCCCEE
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTA------QGEELRKLIGAPVY  155 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~  155 (198)
                      +|+|.+|+..+++....+...+.... .+.|+++++||.|+...            ++.+      ...+++....+ +.
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~------------l~~~~i~~~~~L~~l~ks~~~-~l  155 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA------------LSLEEISKALDLEELAKSHHW-RL  155 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc------------cCHHHHHHhhCHHHhccccCc-eE
Confidence            99999999888887555555444333 58999999999999854            2222      23445566677 78


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcC
Q 029144          156 IECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +.||+.+|+++.+.++|+.+.+..
T Consensus       156 ~~cs~~tge~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  156 VKCSAVTGEDLLEGIDWLCDDLMS  179 (185)
T ss_pred             EEEeccccccHHHHHHHHHHHHHH
Confidence            999999999999999999987765

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.94  E-value=1.1e-25  Score=157.55  Aligned_cols=155  Identities=22%  Similarity=0.222  Sum_probs=105.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCC-CCCccccceeEEEEECCeEEEEEEEeCCCccCcccccc---------cccCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP---------LSYRG   77 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~---------~~~~~   77 (198)
                      +|+++|.+|+|||||++++.+..+... +..++..........+  .+.+++|||||+........         .....
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYK--YLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccC--ceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            799999999999999999998876322 2222222222222223  36788999999843211100         01123


Q ss_pred             CcEEEEEEECCChhhH--HHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144           78 ADVFLLAFSLISKASY--ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY  155 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (198)
                      +|++++|+|+++..++  +.. ..|+..+.....+.|+++|+||+|+.....          +.  +...+....+. ++
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~----------~~--~~~~~~~~~~~-~~  145 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFED----------LS--EIEEEEELEGE-EV  145 (168)
T ss_pred             cCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhh----------HH--HHHHhhhhccC-ce
Confidence            6899999999987653  444 467777766556899999999999965432          22  13444444444 79


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHc
Q 029144          156 IECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      +++||++|.|++++|+++.+.+.
T Consensus       146 ~~~Sa~~~~gi~~l~~~l~~~~~  168 (168)
T cd01897         146 LKISTLTEEGVDEVKNKACELLL  168 (168)
T ss_pred             EEEEecccCCHHHHHHHHHHHhC
Confidence            99999999999999999998763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.94  E-value=1.2e-25  Score=155.43  Aligned_cols=151  Identities=24%  Similarity=0.327  Sum_probs=116.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECC
Q 029144            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI   88 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   88 (198)
                      |+++|++|+|||||++++.+..+...+.++.+..+.. ...++  +.+.+||+||+..+...+..++..+|++++|+|++
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~   78 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAA   78 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECC
Confidence            7999999999999999999998888888887655443 33343  77889999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-----HHcCCCEEEEeccCC
Q 029144           89 SKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-----KLIGAPVYIECSSKT  162 (198)
Q Consensus        89 ~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~  162 (198)
                      +..++......+...+.... .+.|+++|+||+|+.+..            ..++.....     ..... +++++|+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~  145 (159)
T cd04159          79 DRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL------------SVDELIEQMNLKSITDREV-SCYSISCKE  145 (159)
T ss_pred             CHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc------------CHHHHHHHhCcccccCCce-EEEEEEecc
Confidence            99888877444444333322 578999999999986532            111111111     11223 689999999


Q ss_pred             CCCHHHHHHHHHH
Q 029144          163 QQNVKAVFDAAIK  175 (198)
Q Consensus       163 ~~~i~~~~~~i~~  175 (198)
                      +.|+++++++|++
T Consensus       146 ~~gi~~l~~~l~~  158 (159)
T cd04159         146 KTNIDIVLDWLIK  158 (159)
T ss_pred             CCChHHHHHHHhh
Confidence            9999999999976

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.8e-26  Score=157.02  Aligned_cols=161  Identities=17%  Similarity=0.227  Sum_probs=131.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ..++.+|+++|..++||||++.++..+++... .||.+..+.. +.+.  .+.+.+||.+||+.++..|.+++++.+++|
T Consensus        14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~-v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVET-VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             CcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeE-EEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            45789999999999999999999999988776 7888766544 3344  488889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-----cCCCEEE
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-----IGAPVYI  156 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  156 (198)
                      ||+|.+|++-+.++..++...+.... .+.|+++.+||.|++..            .+..+.......     ..+ .+.
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a------------ls~~ei~~~L~l~~l~~~~w-~iq  156 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA------------LSAAEITNKLGLHSLRSRNW-HIQ  156 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc------------CCHHHHHhHhhhhccCCCCc-EEe
Confidence            99999999999999777777777665 68999999999999875            343333332222     233 355


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      .++|.+|+|+.+.++++.+.+...
T Consensus       157 ~~~a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  157 STCAISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             eccccccccHHHHHHHHHHHHhcc
Confidence            699999999999999999987653

>cd01890 LepA LepA subfamily

Probab=99.94  E-value=8.1e-26  Score=159.75  Aligned_cols=155  Identities=18%  Similarity=0.204  Sum_probs=111.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC-------CCCCCCCcc------ccce-eE--EEEE---CCeEEEEEEEeCCCccCcc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNF-SA--NVVV---DGSTVNLGLWDTAGQEDYN   68 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~-------~~~~~~~t~------~~~~-~~--~~~~---~~~~~~l~i~D~~G~~~~~   68 (198)
                      +|+++|.+++|||||+++|+...       +...+.++.      +..+ ..  ...+   ++..+.+.+|||||++.|.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999998742       112222222      1111 11  1222   5567889999999999999


Q ss_pred             cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH
Q 029144           69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK  148 (198)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (198)
                      ..+..+++.+|++++|+|++++.+.... ..|.... .  .++|+++|+||+|+.+..            ..+...+++.
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~-~--~~~~iiiv~NK~Dl~~~~------------~~~~~~~~~~  145 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLAL-E--NNLEIIPVINKIDLPSAD------------PERVKQQIED  145 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHH-H--cCCCEEEEEECCCCCcCC------------HHHHHHHHHH
Confidence            9888899999999999999987766655 4443322 2  378999999999996421            1222344455


Q ss_pred             HcCCC--EEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          149 LIGAP--VYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       149 ~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      ..+..  .++++||++|.|++++|+++.+.+.
T Consensus       146 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (179)
T cd01890         146 VLGLDPSEAILVSAKTGLGVEDLLEAIVERIP  177 (179)
T ss_pred             HhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence            55542  4899999999999999999998763

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=5.1e-25  Score=154.86  Aligned_cols=156  Identities=22%  Similarity=0.305  Sum_probs=112.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.++|+++|++|+|||||++++.+..+. .+.++.+... ..+..++  ..+.+||+||+..+...+..+++++|++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            35789999999999999999999987653 3445544322 2344455  567799999998888888888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc----CCCEEEEe
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI----GAPVYIEC  158 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  158 (198)
                      |+|+++..++......+...+.... .+.|+++++||+|+.+..            ..++........    ...+++++
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~i~~~l~~~~~~~~~~~~~~~  155 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA------------PAEEIAEALNLHDLRDRTWHIQAC  155 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC------------CHHHHHHHcCCcccCCCeEEEEEe
Confidence            9999998888877444444433322 479999999999996532            112221111110    11147899


Q ss_pred             ccCCCCCHHHHHHHHHH
Q 029144          159 SSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~  175 (198)
                      ||++|+|++++|++|++
T Consensus       156 Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         156 SAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             ECCCCCCHHHHHHHHhc
Confidence            99999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.93  E-value=1.4e-24  Score=149.78  Aligned_cols=156  Identities=37%  Similarity=0.534  Sum_probs=120.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .+||+++|.+|+|||||++++....+...+.++....+ ...+..++..+.+.+||+||+..+...+...+++++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999998887666666554443 44456777668889999999999998888888999999999


Q ss_pred             EECCCh-hhHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISK-ASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~-~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      +|.... .++......|...+..... +.|+++++||+|+....           .. ..........+..+++++||.+
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~-~~~~~~~~~~~~~~~~~~sa~~  148 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-----------LK-THVAFLFAKLNGEPIIPLSAET  148 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-----------hh-HHHHHHHhhccCCceEEeecCC
Confidence            998877 6666664466666666554 89999999999996532           12 2333333444444799999999


Q ss_pred             CCCHHHHHHHH
Q 029144          163 QQNVKAVFDAA  173 (198)
Q Consensus       163 ~~~i~~~~~~i  173 (198)
                      +.|+.++|++|
T Consensus       149 ~~gv~~~~~~l  159 (161)
T TIGR00231       149 GKNIDSAFKIV  159 (161)
T ss_pred             CCCHHHHHHHh
Confidence            99999999886

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.93  E-value=1.1e-24  Score=158.80  Aligned_cols=178  Identities=34%  Similarity=0.550  Sum_probs=138.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .+||+++|++|+|||||++++..+.+...+.+|.+..+...... ....+.+.+||++|+++|+..+..++.++++++++
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999999999999987666555444 33478899999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCC--ccccHHHHHHHHHHc--CCCEEEEec
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGA--VPITTAQGEELRKLI--GAPVYIECS  159 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~S  159 (198)
                      +|..+..++.+....|...+.... .+.|+++++||+|+.........-...  +....+.........  ....++++|
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            999997777777799999999887 479999999999998764211000000  112222222222222  222489999


Q ss_pred             cC--CCCCHHHHHHHHHHHHcCCCcc
Q 029144          160 SK--TQQNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       160 a~--~~~~i~~~~~~i~~~~~~~~~~  183 (198)
                      ++  .+.++.++|..+++.+......
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~~~  190 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEIEK  190 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhhhh
Confidence            99  9999999999999988654443

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=9e-25  Score=153.10  Aligned_cols=156  Identities=22%  Similarity=0.191  Sum_probs=108.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccC----cccccccc---cCCCc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----YNRLRPLS---YRGAD   79 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~~~~---~~~~~   79 (198)
                      +|+++|.+|+|||||++++.+.... ..+..++.......+.+++. ..+.+|||||+..    +..+...+   +..+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            6899999999999999999865431 12222222222222333332 3678999999742    22222233   34699


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-CCCE
Q 029144           80 VFLLAFSLISK-ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-GAPV  154 (198)
Q Consensus        80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  154 (198)
                      ++++|+|++++ .+++.. ..|.+.+....   .+.|+++|+||+|+.+..           ...+....+.... +. +
T Consensus        81 ~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~  147 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEE-----------ELFELLKELLKELWGK-P  147 (170)
T ss_pred             EEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCch-----------hhHHHHHHHHhhCCCC-C
Confidence            99999999998 788777 67777776554   378999999999996643           2233344444443 44 6


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHH
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      ++++||+++.|++++|+++.+.+
T Consensus       148 ~~~~Sa~~~~gi~~l~~~i~~~~  170 (170)
T cd01898         148 VFPISALTGEGLDELLRKLAELL  170 (170)
T ss_pred             EEEEecCCCCCHHHHHHHHHhhC
Confidence            89999999999999999998753

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.93  E-value=1.1e-25  Score=153.36  Aligned_cols=135  Identities=26%  Similarity=0.275  Sum_probs=99.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCcc-----CcccccccccCCCcEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-----DYNRLRPLSYRGADVFL   82 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-----~~~~~~~~~~~~~~~~i   82 (198)
                      ||+++|.+|+|||||++++.+..+.  +.+|..      ..+..     .+||+||+.     .|..... .++++|+++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~------~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi   67 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA------VEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA   67 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--ccccee------EEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence            8999999999999999999987642  223321      11211     589999973     2333333 478999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      +|||++++.++...  .|...+     ..|+++|+||+|+.+..           ...+++.++++..+..+++++||++
T Consensus        68 lv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa~~  129 (142)
T TIGR02528        68 LVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISSVD  129 (142)
T ss_pred             EEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEecCC
Confidence            99999999987543  444332     24999999999996532           3456667777777765799999999


Q ss_pred             CCCHHHHHHHHH
Q 029144          163 QQNVKAVFDAAI  174 (198)
Q Consensus       163 ~~~i~~~~~~i~  174 (198)
                      +.|++++|.++.
T Consensus       130 ~~gi~~l~~~l~  141 (142)
T TIGR02528       130 EQGLEALVDYLN  141 (142)
T ss_pred             CCCHHHHHHHHh
Confidence            999999998874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.93  E-value=8.2e-26  Score=147.53  Aligned_cols=157  Identities=21%  Similarity=0.280  Sum_probs=129.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .++.+.++|..++|||||++....+.+.+.-.||.+.++..   ++...+.+.+||.||+.+|+++|..+.+.++++++|
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk---~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK---VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE---eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            35789999999999999999999888877777777655433   555668888999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-----HHHHcCCCEEEEe
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-----LRKLIGAPVYIEC  158 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  158 (198)
                      +|+.+++.+...+.++.+.+.+.. .++|+++.+||.|++...            +...+..     -..+... .+|.+
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL------------~~~~li~rmgL~sitdREv-cC~si  162 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL------------SKIALIERMGLSSITDREV-CCFSI  162 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc------------cHHHHHHHhCccccccceE-EEEEE
Confidence            999999999998888888888776 799999999999998753            3222221     1112222 48899


Q ss_pred             ccCCCCCHHHHHHHHHHHH
Q 029144          159 SSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~  177 (198)
                      |+++..|++-+.+|+++.-
T Consensus       163 Scke~~Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  163 SCKEKVNIDITLDWLIEHS  181 (186)
T ss_pred             EEcCCccHHHHHHHHHHHh
Confidence            9999999999999999864

>PRK15494 era GTPase Era; Provisional

Probab=99.93  E-value=5.4e-24  Score=163.74  Aligned_cols=163  Identities=16%  Similarity=0.244  Sum_probs=114.2

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCC--CCCCccccceeEEEEECCeEEEEEEEeCCCccC-cccccc-----
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRP-----   72 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~-----   72 (198)
                      |+..+.++|+++|.+|+|||||+++|.+..+..  +...|+.......+..++  ..+.||||||+.. +..+..     
T Consensus        47 ~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~  124 (339)
T PRK15494         47 MSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRC  124 (339)
T ss_pred             ccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHH
Confidence            344567899999999999999999999876632  223344444455556666  4567999999843 332221     


Q ss_pred             --cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144           73 --LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI  150 (198)
Q Consensus        73 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (198)
                        ..+.++|++++|+|..+.  +......|+..+...  +.|.++|+||+|+.+.             ...++.++....
T Consensus       125 ~~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~  187 (339)
T PRK15494        125 AWSSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTEN  187 (339)
T ss_pred             HHHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhc
Confidence              236789999999997653  334434566666554  6788899999999542             123444444444


Q ss_pred             C-CCEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          151 G-APVYIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       151 ~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      + ...++++||++|.|++++|++|.+.+.....
T Consensus       188 ~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~  220 (339)
T PRK15494        188 HPDSLLFPISALSGKNIDGLLEYITSKAKISPW  220 (339)
T ss_pred             CCCcEEEEEeccCccCHHHHHHHHHHhCCCCCC
Confidence            3 3479999999999999999999998866543

>cd04171 SelB SelB subfamily

Probab=99.93  E-value=1.6e-24  Score=150.77  Aligned_cols=156  Identities=19%  Similarity=0.144  Sum_probs=100.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC---CCCCCCCCcc-ccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN---TFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~---~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +.|+++|.+|+|||||++++.+.   .+...+.++. .+.......+.+ ...+.+|||||+++|.......++++|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            36899999999999999999863   2222222222 111122333431 357889999999988766667788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH---cCCCEEEEec
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL---IGAPVYIECS  159 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~S  159 (198)
                      +|+|+++....+..  ..+..+... ...|+++|+||+|+.+...        .....++..+....   .+. +++++|
T Consensus        80 ~V~d~~~~~~~~~~--~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~S  147 (164)
T cd04171          80 LVVAADEGIMPQTR--EHLEILELL-GIKRGLVVLTKADLVDEDW--------LELVEEEIRELLAGTFLADA-PIFPVS  147 (164)
T ss_pred             EEEECCCCccHhHH--HHHHHHHHh-CCCcEEEEEECccccCHHH--------HHHHHHHHHHHHHhcCcCCC-cEEEEe
Confidence            99999873211111  111222222 2349999999999965321        00122333444433   234 799999


Q ss_pred             cCCCCCHHHHHHHHHH
Q 029144          160 SKTQQNVKAVFDAAIK  175 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~  175 (198)
                      |+++.|++++++.+.+
T Consensus       148 a~~~~~v~~l~~~l~~  163 (164)
T cd04171         148 AVTGEGIEELKEYLDE  163 (164)
T ss_pred             CCCCcCHHHHHHHHhh
Confidence            9999999999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=4.2e-24  Score=160.07  Aligned_cols=157  Identities=15%  Similarity=0.108  Sum_probs=113.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc-c-------ccccccCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-R-------LRPLSYRG   77 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~-------~~~~~~~~   77 (198)
                      +|+++|.+|+|||||+|++.+..+.  .+...|+..........++  ..+.+|||||..... .       .....+++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            6899999999999999999987643  3444566554444443444  457899999975432 1       12345688


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144           78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE  157 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (198)
                      +|++++|+|+++..+..   ..++..+...  +.|+++|+||+|+.+..           ...+....+....+..++++
T Consensus        80 aDvvl~VvD~~~~~~~~---~~i~~~l~~~--~~p~ilV~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~v~~  143 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG---EFVLTKLQNL--KRPVVLTRNKLDNKFKD-----------KLLPLIDKYAILEDFKDIVP  143 (270)
T ss_pred             CCEEEEEEECCCCCchH---HHHHHHHHhc--CCCEEEEEECeeCCCHH-----------HHHHHHHHHHhhcCCCceEE
Confidence            99999999999876654   3445555554  79999999999996432           22234445555555557899


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      +||++|.|++++++.+.+.+.....
T Consensus       144 iSA~~g~gi~~L~~~l~~~l~~~~~  168 (270)
T TIGR00436       144 ISALTGDNTSFLAAFIEVHLPEGPF  168 (270)
T ss_pred             EecCCCCCHHHHHHHHHHhCCCCCC
Confidence            9999999999999999998865443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.92  E-value=3.8e-24  Score=163.63  Aligned_cols=159  Identities=19%  Similarity=0.179  Sum_probs=116.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEE-CCeEEEEEEEeCCCccCcc----ccc---ccccCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYN----RLR---PLSYRG   77 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~----~~~---~~~~~~   77 (198)
                      ..|.+||.|++|||||++++..... ...|..|+.......+.+ ++  ..+.+||+||...-.    .+.   ...++.
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~--~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY--KSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC--cEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            4799999999999999999987532 344555665554444555 33  346799999974311    122   224557


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           78 ADVFLLAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      ++++++|+|+++.++++.. ..|...+..+.   .+.|+++|+||+|+.+...          ...+....+....+. +
T Consensus       237 a~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~----------~~~~~~~~~~~~~~~-~  304 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEE----------EREKRAALELAALGG-P  304 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchh----------HHHHHHHHHHHhcCC-C
Confidence            8999999999988788877 78888887764   3789999999999975432          333344444455555 6


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++++||++++|+++++++|.+.+..
T Consensus       305 i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        305 VFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            8999999999999999999988754

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.8e-24  Score=138.74  Aligned_cols=158  Identities=16%  Similarity=0.207  Sum_probs=128.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .++++|+++|..++||||++..+..+... ...||.+..+.. +++  +.+.+++||.+|++..+.+|++++.+..++||
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnvet-Vty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF   90 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVET-VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   90 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCc-ccccccceeEEE-EEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence            46899999999999999999999988753 446666654433 344  44888899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-----HHcCCCEEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-----KLIGAPVYIE  157 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  157 (198)
                      |+|..+.+..++++.++...+...- .+.|++|.+||.|++...            +..++..+.     +...+ -+.+
T Consensus        91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~------------~pqei~d~leLe~~r~~~W-~vqp  157 (180)
T KOG0071|consen   91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM------------KPQEIQDKLELERIRDRNW-YVQP  157 (180)
T ss_pred             EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc------------CHHHHHHHhccccccCCcc-Eeec
Confidence            9999999999999899998888765 789999999999998753            333433322     22333 3557


Q ss_pred             eccCCCCCHHHHHHHHHHHHc
Q 029144          158 CSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      +||.+|+|+.+-|.++.+.+.
T Consensus       158 ~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  158 SCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             cccccchhHHHHHHHHHhhcc
Confidence            999999999999999998764

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.92  E-value=1.6e-23  Score=137.84  Aligned_cols=168  Identities=24%  Similarity=0.315  Sum_probs=142.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEE-CCeEEEEEEEeCCCccCc-ccccccccCCCcE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDY-NRLRPLSYRGADV   80 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-~~~~~~~~~~~~~   80 (198)
                      +..||+++|..++|||+|+.+++.+.  ...++.+|..+.+...+.. ++..-.+.++||.|...+ ..+.++++.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            56899999999999999999988654  3456778888888776654 455667889999998877 6778889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC  158 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (198)
                      +++||+..|++||+.. ..+...|.+..  ..+|+++.+||+|+.++..          +..+.++.|+..-.. ..+++
T Consensus        88 fVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~----------vd~d~A~~Wa~rEkv-kl~eV  155 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPRE----------VDMDVAQIWAKREKV-KLWEV  155 (198)
T ss_pred             EEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchh----------cCHHHHHHHHhhhhe-eEEEE
Confidence            9999999999999988 66666676654  4799999999999987665          888999999998877 79999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCCcch
Q 029144          159 SSKTQQNVKAVFDAAIKVVLQPPKNK  184 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~~~~~  184 (198)
                      ++.+..++-+.|..+...+..+..+.
T Consensus       156 ta~dR~sL~epf~~l~~rl~~pqskS  181 (198)
T KOG3883|consen  156 TAMDRPSLYEPFTYLASRLHQPQSKS  181 (198)
T ss_pred             EeccchhhhhHHHHHHHhccCCcccc
Confidence            99999999999999999998877654

>cd01878 HflX HflX subfamily

Probab=99.92  E-value=4e-24  Score=154.20  Aligned_cols=154  Identities=20%  Similarity=0.204  Sum_probs=107.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccceeEEEEECCeEEEEEEEeCCCccCc---------ccccccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLS   74 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~~~   74 (198)
                      ..++|+++|++|+|||||++++.+..+.. ....++.......+.+++. ..+.+||+||....         ...+ ..
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~  117 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EE  117 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence            45799999999999999999999876322 2112222222333344432 36779999997321         1111 12


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                      +.++|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.+...          .     .......+. 
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~----------~-----~~~~~~~~~-  180 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEE----------L-----EERLEAGRP-  180 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHH----------H-----HHHhhcCCC-
Confidence            5689999999999998887766 56666665543 4789999999999966432          1     133334444 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHH
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      +++++||+++.|+++++++|.+.+
T Consensus       181 ~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         181 DAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHhhC
Confidence            699999999999999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.92  E-value=8e-24  Score=147.96  Aligned_cols=158  Identities=16%  Similarity=0.193  Sum_probs=107.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      .|+++|.+|+|||||++++..+.+...+.++..... ...+... .....+.+|||||+..|...+...+..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            489999999999999999998876654333332222 1222222 12467889999999998888888889999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH----Hc-CCCEEEEecc
Q 029144           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK----LI-GAPVYIECSS  160 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~Sa  160 (198)
                      |+++.......  ..+..+...  +.|+++|+||+|+.....         .........+..    .. ...+++++||
T Consensus        82 d~~~~~~~~~~--~~~~~~~~~--~~p~ivv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  148 (168)
T cd01887          82 AADDGVMPQTI--EAIKLAKAA--NVPFIVALNKIDKPNANP---------ERVKNELSELGLQGEDEWGGDVQIVPTSA  148 (168)
T ss_pred             ECCCCccHHHH--HHHHHHHHc--CCCEEEEEEceecccccH---------HHHHHHHHHhhccccccccCcCcEEEeec
Confidence            99885432222  222333333  789999999999964321         001111111111    11 1136899999


Q ss_pred             CCCCCHHHHHHHHHHHHc
Q 029144          161 KTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~  178 (198)
                      +++.|++++++++.+...
T Consensus       149 ~~~~gi~~l~~~l~~~~~  166 (168)
T cd01887         149 KTGEGIDDLLEAILLLAE  166 (168)
T ss_pred             ccCCCHHHHHHHHHHhhh
Confidence            999999999999988653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01894 EngA1 EngA1 subfamily

Probab=99.92  E-value=9.7e-24  Score=145.79  Aligned_cols=147  Identities=22%  Similarity=0.219  Sum_probs=106.3

Q ss_pred             EEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc--------ccccccCCCc
Q 029144           10 VTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSYRGAD   79 (198)
Q Consensus        10 ~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~~~~~   79 (198)
                      +++|.+|+|||||++++....  +.....+++..........++  ..+.+|||||+..+..        .+...++.+|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            479999999999999999764  333444555555555555555  5677999999987544        2334578899


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144           80 VFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS  159 (198)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (198)
                      ++++|+|+.++.+....  .+...+...  +.|+++|+||+|+.+...          .     .......+..+++++|
T Consensus        79 ~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~----------~-----~~~~~~~~~~~~~~~S  139 (157)
T cd01894          79 VILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED----------E-----AAEFYSLGFGEPIPIS  139 (157)
T ss_pred             EEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH----------H-----HHHHHhcCCCCeEEEe
Confidence            99999999876555433  344445444  699999999999976432          1     2223345554689999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q 029144          160 SKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~~~  177 (198)
                      ++++.|++++++++++.+
T Consensus       140 a~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         140 AEHGRGIGDLLDAILELL  157 (157)
T ss_pred             cccCCCHHHHHHHHHhhC
Confidence            999999999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.92  E-value=2.2e-23  Score=142.60  Aligned_cols=152  Identities=41%  Similarity=0.750  Sum_probs=116.0

Q ss_pred             EECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCC
Q 029144           11 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS   89 (198)
Q Consensus        11 vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~   89 (198)
                      ++|++|+|||||++++..... .....++.................+.+||+||+..+...+...++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999998876 4555555544455555666667889999999998888887888899999999999999


Q ss_pred             hhhHHHHHHHH--HHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH-HHHHHHHcCCCEEEEeccCCCCCH
Q 029144           90 KASYENVAKKW--IPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ-GEELRKLIGAPVYIECSSKTQQNV  166 (198)
Q Consensus        90 ~~s~~~~~~~~--~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~i  166 (198)
                      +.+.... ..|  .........+.|+++++||+|+.....          ..... ......... .+++++|+.++.|+
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i  148 (157)
T cd00882          81 RESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERV----------VSEEELAEQLAKELG-VPYFETSAKTGENV  148 (157)
T ss_pred             HHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccc----------hHHHHHHHHHHhhcC-CcEEEEecCCCCCh
Confidence            9988888 444  222333346899999999999976532          12111 233333344 47999999999999


Q ss_pred             HHHHHHHH
Q 029144          167 KAVFDAAI  174 (198)
Q Consensus       167 ~~~~~~i~  174 (198)
                      ++++++|.
T Consensus       149 ~~~~~~l~  156 (157)
T cd00882         149 EELFEELA  156 (157)
T ss_pred             HHHHHHHh
Confidence            99999886

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.91  E-value=3.1e-23  Score=143.54  Aligned_cols=147  Identities=15%  Similarity=0.234  Sum_probs=106.1

Q ss_pred             EECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc------ccccc--CCCcEE
Q 029144           11 TVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVF   81 (198)
Q Consensus        11 vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~~~~~   81 (198)
                      ++|.+|+|||||++++.+.... ..+..++.......+.+++  ..+.+|||||+..+...      +..++  .++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            5899999999999999887533 2333344444445566665  46789999999876643      34445  489999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      ++|+|+++++...    .+...+...  +.|+++|+||+|+.+...          +. .....+....+. +++++||.
T Consensus        79 i~v~d~~~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~----------~~-~~~~~~~~~~~~-~~~~iSa~  140 (158)
T cd01879          79 VNVVDATNLERNL----YLTLQLLEL--GLPVVVALNMIDEAEKRG----------IK-IDLDKLSELLGV-PVVPTSAR  140 (158)
T ss_pred             EEEeeCCcchhHH----HHHHHHHHc--CCCEEEEEehhhhccccc----------ch-hhHHHHHHhhCC-CeEEEEcc
Confidence            9999998865432    233334333  799999999999976432          22 233456666676 79999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029144          162 TQQNVKAVFDAAIKVV  177 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~  177 (198)
                      ++.|++++++++.+.+
T Consensus       141 ~~~~~~~l~~~l~~~~  156 (158)
T cd01879         141 KGEGIDELKDAIAELA  156 (158)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998864

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=1.6e-23  Score=167.89  Aligned_cols=161  Identities=20%  Similarity=0.196  Sum_probs=115.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccC----------ccccc-
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR-   71 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~-   71 (198)
                      ..++|+++|.+|+|||||++++++...  .....+++.+.....+.+++..+  .+|||||..+          |.... 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW--RFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE--EEEECCCccccccccchHHHHHHHHH
Confidence            468999999999999999999998754  44555666666666677777554  5999999632          22222 


Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      ..+++++|++++|+|++++.++.+.  .++..+...  +.|+++|+||+|+.+...        ......+.........
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~~--~~piIiV~NK~Dl~~~~~--------~~~~~~~i~~~l~~~~  355 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIEA--GRALVLAFNKWDLVDEDR--------RYYLEREIDRELAQVP  355 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChhH--------HHHHHHHHHHhcccCC
Confidence            2356899999999999999888776  344455443  899999999999965321        0011122222222223


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ..+++++||++|.|++++|..+.+.+..
T Consensus       356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        356 WAPRVNISAKTGRAVDKLVPALETALES  383 (472)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3478999999999999999999987743

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.91  E-value=4.1e-23  Score=147.81  Aligned_cols=147  Identities=16%  Similarity=0.089  Sum_probs=99.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh--CCCCCCCC------------Cccccce-eEEEEECCeEEEEEEEeCCCccCccccc
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLR   71 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~   71 (198)
                      -+|+++|.+++|||||+++++.  +.+...+.            .+.+..+ .....+....+.+.+|||||+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  55544321            1111111 1222333445788899999999999999


Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH--
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL--  149 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--  149 (198)
                      ..+++++|++++|+|+++... ... ..++..+...  ++|+++|+||+|+.....         ....++...+...  
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~~-~~~-~~~~~~~~~~--~~p~iiv~NK~Dl~~~~~---------~~~~~~~~~~~~~~~  149 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGPM-PQT-RFVLKKALEL--GLKPIVVINKIDRPDARP---------EEVVDEVFDLFIELG  149 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCcc-HHH-HHHHHHHHHc--CCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence            999999999999999987432 222 3334444333  789999999999965321         0123344444322  


Q ss_pred             -----cCCCEEEEeccCCCCCHH
Q 029144          150 -----IGAPVYIECSSKTQQNVK  167 (198)
Q Consensus       150 -----~~~~~~~~~Sa~~~~~i~  167 (198)
                           .+. +++++||++|.|+.
T Consensus       150 ~~~~~~~~-~iv~~Sa~~g~~~~  171 (194)
T cd01891         150 ATEEQLDF-PVLYASAKNGWASL  171 (194)
T ss_pred             CccccCcc-CEEEeehhcccccc
Confidence                 245 68999999997663

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK04213 GTP-binding protein; Provisional

Probab=99.91  E-value=8.9e-24  Score=152.06  Aligned_cols=156  Identities=19%  Similarity=0.169  Sum_probs=102.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCC-----------ccCccccccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPL   73 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~~~   73 (198)
                      ..++|+++|.+|+|||||++++.+..+...+.++.... .....+.    .+.+|||||           ++.+...+..
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   82 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR   82 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence            56899999999999999999999877654433433211 1222222    477999999           3455554444


Q ss_pred             cc----CCCcEEEEEEECCChhhHH---------HHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccH
Q 029144           74 SY----RGADVFLLAFSLISKASYE---------NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITT  140 (198)
Q Consensus        74 ~~----~~~~~~i~v~d~~~~~s~~---------~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~  140 (198)
                      ++    ..++++++|+|.++.....         .....+...+...  ++|+++|+||+|+.+..             .
T Consensus        83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~-------------~  147 (201)
T PRK04213         83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAVNKMDKIKNR-------------D  147 (201)
T ss_pred             HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEEECccccCcH-------------H
Confidence            44    3457888899886532210         0112233344333  89999999999996431             1


Q ss_pred             HHHHHHHHHcCC--------CEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          141 AQGEELRKLIGA--------PVYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       141 ~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      +...++....+.        .+++++||++| |+++++++|.+.+....
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        148 EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             HHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence            233444444443        14799999999 99999999999875443

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.91  E-value=2.8e-23  Score=137.27  Aligned_cols=114  Identities=33%  Similarity=0.573  Sum_probs=87.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      ||+|+|.+|+|||||+++|.+....  ..+.++....+ .....+......+.+||++|++.+...+..++.++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  12223333333 23445666666689999999999988888889999999999


Q ss_pred             EECCChhhHHHHHH--HHHHHHhhhCCCCCEEEEeecCC
Q 029144           85 FSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLD  121 (198)
Q Consensus        85 ~d~~~~~s~~~~~~--~~~~~~~~~~~~~p~iiv~nK~D  121 (198)
                      ||++++.+++.+..  .|+..+....++.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999999998732  25666666667899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=3.4e-23  Score=166.06  Aligned_cols=154  Identities=20%  Similarity=0.217  Sum_probs=111.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccC--------cccccccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLS   74 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~   74 (198)
                      ...+|+++|.+|+|||||++++.+...  ......++.+.......+++.  .+.+|||||.+.        +...+..+
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~  114 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA  114 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence            346899999999999999999998753  233334444555555666664  467999999763        22334456


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      ++++|++++|+|++++.+...  ..+...+...  ++|+++|+||+|+....             .+....+  ..+...
T Consensus       115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~~--~~piilV~NK~Dl~~~~-------------~~~~~~~--~~g~~~  175 (472)
T PRK03003        115 MRTADAVLFVVDATVGATATD--EAVARVLRRS--GKPVILAANKVDDERGE-------------ADAAALW--SLGLGE  175 (472)
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccCCccc-------------hhhHHHH--hcCCCC
Confidence            789999999999998876654  3555666654  89999999999996421             1111222  233334


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      .+++||++|.|++++|+++++.+..
T Consensus       176 ~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        176 PHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             eEEEEcCCCCCcHHHHHHHHhhccc
Confidence            5799999999999999999998855

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.90  E-value=1e-22  Score=155.61  Aligned_cols=158  Identities=21%  Similarity=0.204  Sum_probs=112.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc----cccccc---cCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN----RLRPLS---YRG   77 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~~~~~~---~~~   77 (198)
                      ...|+++|.+++|||||++++..... ..+|..|+.......+.+++ ...+.+||+||.....    .+...+   +..
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            35899999999999999999997642 33444555444444444543 2456799999974322    222223   456


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144           78 ADVFLLAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        78 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      ++++++|+|+++.   +.++.. ..|...+..+.   .+.|+++|+||+|+.+..           ...+..+.+.+..+
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~-----------~~~~~~~~l~~~~~  303 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEE-----------ELAELLKELKKALG  303 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChH-----------HHHHHHHHHHHHcC
Confidence            9999999999976   566666 66766666553   478999999999996542           22334455666666


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      . +++++||++++|+++++.++.+.+
T Consensus       304 ~-~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       304 K-PVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             C-cEEEEEccCCcCHHHHHHHHHHHh
Confidence            5 699999999999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=3.9e-23  Score=140.69  Aligned_cols=147  Identities=19%  Similarity=0.258  Sum_probs=105.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc------ccccc--CC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RG   77 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~   77 (198)
                      ++|+++|.||+|||||+|++.+... ..++..++.+.....+.+.+  ..+.++|+||.......      ...++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999998753 34566777666667777777  45569999996443321      22233  57


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144           78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE  157 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (198)
                      .|++++|+|+++.+   .. ..+..++...  ++|+++|+||+|..+...          +.. +...+.+..+. +++.
T Consensus        79 ~D~ii~VvDa~~l~---r~-l~l~~ql~e~--g~P~vvvlN~~D~a~~~g----------~~i-d~~~Ls~~Lg~-pvi~  140 (156)
T PF02421_consen   79 PDLIIVVVDATNLE---RN-LYLTLQLLEL--GIPVVVVLNKMDEAERKG----------IEI-DAEKLSERLGV-PVIP  140 (156)
T ss_dssp             SSEEEEEEEGGGHH---HH-HHHHHHHHHT--TSSEEEEEETHHHHHHTT----------EEE--HHHHHHHHTS--EEE
T ss_pred             CCEEEEECCCCCHH---HH-HHHHHHHHHc--CCCEEEEEeCHHHHHHcC----------CEE-CHHHHHHHhCC-CEEE
Confidence            99999999998743   22 2445555555  899999999999987654          332 35677777888 7999


Q ss_pred             eccCCCCCHHHHHHHH
Q 029144          158 CSSKTQQNVKAVFDAA  173 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i  173 (198)
                      +||++++|++++++.|
T Consensus       141 ~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  141 VSARTGEGIDELKDAI  156 (156)
T ss_dssp             EBTTTTBTHHHHHHHH
T ss_pred             EEeCCCcCHHHHHhhC
Confidence            9999999999999875

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.90  E-value=8.7e-23  Score=157.33  Aligned_cols=152  Identities=22%  Similarity=0.254  Sum_probs=108.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccC---------cccccccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLS   74 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~   74 (198)
                      ..++|+++|.+|+|||||+|++.+... ..+...++.+.....+.+.+. ..+.+|||||..+         |.+.+ ..
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence            358999999999999999999998754 234444555555566666332 4677999999722         22222 24


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                      +.++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+.+...          +     .... . +..
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----------v-----~~~~-~-~~~  327 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----------I-----ERLE-E-GYP  327 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh----------H-----HHHH-h-CCC
Confidence            6789999999999998877765 55555555443 4789999999999964321          1     1111 1 223


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHH
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      +++++||++|.|+++++++|.+.
T Consensus       328 ~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       328 EAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CEEEEEccCCCCHHHHHHHHHhh
Confidence            58999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.90  E-value=1.1e-22  Score=160.95  Aligned_cols=150  Identities=22%  Similarity=0.241  Sum_probs=113.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc--------cccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS   74 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~   74 (198)
                      ..++|+++|.+|+|||||++++.+..  +..++.+|+.+.....+.+++  ..+.+|||||+..+...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            45899999999999999999999864  456677777777777777877  44579999998655432        2346


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      ++++|++++|+|++++.+++..   |+..+..  .+.|+++|+||+|+.+.                +...+....+. +
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~----------------~~~~~~~~~~~-~  337 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN----------------SLEFFVSSKVL-N  337 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc----------------chhhhhhhcCC-c
Confidence            7899999999999998876643   5444443  37899999999999542                11233445555 6


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++++||++ .|++++|+.+.+.+..
T Consensus       338 ~~~vSak~-~gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       338 SSNLSAKQ-LKIKALVDLLTQKINA  361 (442)
T ss_pred             eEEEEEec-CCHHHHHHHHHHHHHH
Confidence            88999998 6999999988887754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=3e-22  Score=159.53  Aligned_cols=158  Identities=23%  Similarity=0.257  Sum_probs=113.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc-----------
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----------   71 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-----------   71 (198)
                      ..++|+++|.+++|||||++++++..  ...+..+|+.+.....+..++.  .+.+|||||..++....           
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence            46899999999999999999999764  3445556666666566666664  56799999986654332           


Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-HHH---
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-ELR---  147 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~---  147 (198)
                      ...++.+|++++|+|++++.+..+.  .++..+...  +.|+++|+||+|+.+..           ...++.. .+.   
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~-----------~~~~~~~~~~~~~~  313 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILEA--GKALVIVVNKWDLVKDE-----------KTREEFKKELRRKL  313 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEECcccCCCH-----------HHHHHHHHHHHHhc
Confidence            2357889999999999988777665  444454444  79999999999997221           1122222 111   


Q ss_pred             HHcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          148 KLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ...+..+++++||++|.|++++|+++.+.+..
T Consensus       314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       314 PFLDFAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             ccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            22233479999999999999999999887643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.90  E-value=1.6e-22  Score=143.88  Aligned_cols=157  Identities=20%  Similarity=0.158  Sum_probs=110.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc-----------------ccceeEEEEECCeEEEEEEEeCCCccCcccc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----------------FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL   70 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~   70 (198)
                      +|+++|.+|+|||||++++...........+.                 ...........  ...+.+||+||+..+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence            48999999999999999999876554332211                 11111122223  367889999999988888


Q ss_pred             cccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144           71 RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI  150 (198)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (198)
                      +...++.+|++++|+|+.++.+....  .++..+..  .+.|+++|+||+|+.....        .....++.++.....
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~--------~~~~~~~~~~~~~~~  146 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEED--------LEEVLREIKELLGLI  146 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhc--------HHHHHHHHHHHHccc
Confidence            88888999999999999887654433  44444444  3899999999999975221        001223333333332


Q ss_pred             C-------------CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          151 G-------------APVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       151 ~-------------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      +             ..+++++||++|.|+++++.++.+.+.
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         147 GFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence            2             247999999999999999999998874

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.90  E-value=1e-22  Score=143.34  Aligned_cols=152  Identities=25%  Similarity=0.284  Sum_probs=103.4

Q ss_pred             EECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEEC-CeEEEEEEEeCCCccCc----cccc---ccccCCCcEE
Q 029144           11 TVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDY----NRLR---PLSYRGADVF   81 (198)
Q Consensus        11 vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~----~~~~---~~~~~~~~~~   81 (198)
                      ++|++|+|||||++++.+... ...+..++.......+.++ +  ..+.+||+||....    ..++   ...++++|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            589999999999999998764 2334444433333334455 4  45679999997332    2222   2246789999


Q ss_pred             EEEEECCCh------hhHHHHHHHHHHHHhhhC--------CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144           82 LLAFSLISK------ASYENVAKKWIPELRHYA--------PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR  147 (198)
Q Consensus        82 i~v~d~~~~------~s~~~~~~~~~~~~~~~~--------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (198)
                      ++|+|+.+.      .++... ..|...+....        .+.|+++|+||+|+.....          ..........
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----------~~~~~~~~~~  147 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----------LEEELVRELA  147 (176)
T ss_pred             EEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----------HHHHHHHHHh
Confidence            999999988      466665 55555554332        3799999999999975432          2222122333


Q ss_pred             HHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          148 KLIGAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      ...+. .++++||+++.|++++++++.+.
T Consensus       148 ~~~~~-~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         148 LEEGA-EVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             cCCCC-CEEEEehhhhcCHHHHHHHHHhh
Confidence            33444 69999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.90  E-value=2.9e-22  Score=138.33  Aligned_cols=145  Identities=26%  Similarity=0.326  Sum_probs=105.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc--------cccccC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR   76 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~~   76 (198)
                      ++|+++|++|+|||||++++.....  .....+++.........+++  ..+.+||+||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            5899999999999999999997753  23333444443344444554  56779999998665422        123567


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      .+|++++|+|++++.+.... ..+..     ..+.|+++|+||+|+.+...          .       .....+. +++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~----------~-------~~~~~~~-~~~  135 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE----------L-------LSLLAGK-PII  135 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc----------c-------ccccCCC-ceE
Confidence            89999999999988777665 32222     34799999999999976542          1       2233343 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029144          157 ECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      ++||+++.|+++++.+|.+.+
T Consensus       136 ~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         136 AISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             EEECCCCCCHHHHHHHHHHhh
Confidence            999999999999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.90  E-value=1.2e-22  Score=161.43  Aligned_cols=148  Identities=24%  Similarity=0.292  Sum_probs=112.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc--------cccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS   74 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~   74 (198)
                      ..++|+++|.+|+|||||++++.+..  +..++.+++.+.....+.+++  ..+.+|||||...+...        ....
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            35899999999999999999999865  355666677776677777776  45679999998654432        1235


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      +.++|++++|+|++++.+++.. ..|..     ..+.|+++|+||+|+.+...          ..        ...+. +
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~----------~~--------~~~~~-~  346 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEID----------LE--------EENGK-P  346 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccch----------hh--------hccCC-c
Confidence            7889999999999998877654 44432     34789999999999965421          11        22333 6


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++++||++|.|++++++++.+.+..
T Consensus       347 ~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        347 VIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            8999999999999999999998754

>cd01895 EngA2 EngA2 subfamily

Probab=99.90  E-value=8.3e-22  Score=138.15  Aligned_cols=155  Identities=23%  Similarity=0.275  Sum_probs=105.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc-----------cc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-----------RP   72 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~~   72 (198)
                      +++|+++|.+|+|||||++++.+...  ......++.......+..++.  .+.+||+||.......           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence            68999999999999999999987643  223333444444444555654  4569999997543211           11


Q ss_pred             cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-HHHHHc-
Q 029144           73 LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-ELRKLI-  150 (198)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-  150 (198)
                      ..+..+|++++|+|++++.+....  .+...+...  +.|+++++||+|+.+...          ...+... .+.... 
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~  145 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL--RIAGLILEE--GKALVIVVNKWDLVEKDS----------KTMKEFKKEIRRKLP  145 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHhc--CCCEEEEEeccccCCccH----------HHHHHHHHHHHhhcc
Confidence            245689999999999998776543  333444333  799999999999976421          1222222 222222 


Q ss_pred             --CCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          151 --GAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       151 --~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                        +..+++++||+++.|++++++++.+.
T Consensus       146 ~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         146 FLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cccCCceEEEeccCCCCHHHHHHHHHHh
Confidence              23479999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04163 Era Era subfamily

Probab=99.90  E-value=2.2e-22  Score=140.07  Aligned_cols=156  Identities=19%  Similarity=0.168  Sum_probs=105.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCC--CCCccccceeEEEEECCeEEEEEEEeCCCccCccc--------cccccc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR--------LRPLSY   75 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~   75 (198)
                      ..+|+++|.+|+|||||++++.+......  ...+........  .......+.+||+||......        .....+
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            57899999999999999999987654221  112222222222  222236677999999754432        223457


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144           76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY  155 (198)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (198)
                      ..+|++++|+|++++.+.  ....+...+...  +.|+++|+||+|+.....          ...+....+....+..++
T Consensus        81 ~~~d~i~~v~d~~~~~~~--~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~  146 (168)
T cd04163          81 KDVDLVLFVVDASEPIGE--GDEFILELLKKS--KTPVILVLNKIDLVKDKE----------DLLPLLEKLKELGPFAEI  146 (168)
T ss_pred             HhCCEEEEEEECCCccCc--hHHHHHHHHHHh--CCCEEEEEEchhccccHH----------HHHHHHHHHHhccCCCce
Confidence            789999999999987222  213444555544  789999999999974321          233334444445544579


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 029144          156 IECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      +++|++++.|++++++.|.+.+
T Consensus       147 ~~~s~~~~~~~~~l~~~l~~~~  168 (168)
T cd04163         147 FPISALKGENVDELLEEIVKYL  168 (168)
T ss_pred             EEEEeccCCChHHHHHHHHhhC
Confidence            9999999999999999997753

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.90  E-value=2.7e-22  Score=163.13  Aligned_cols=153  Identities=17%  Similarity=0.237  Sum_probs=108.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      +..+|+++|+.++|||||++++....+...+.+.....+ ...+.+++. ..+.||||||++.|..++...+..+|++++
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            667999999999999999999998877655433332222 233444332 267799999999999999888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-------cC-CCEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-------IG-APVY  155 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~  155 (198)
                      |+|++++...+..  +.+......  ++|+++++||+|+...             ..++.......       ++ ..++
T Consensus       165 VVda~dgv~~qT~--e~i~~~~~~--~vPiIVviNKiDl~~~-------------~~e~v~~~L~~~g~~~~~~~~~~~~  227 (587)
T TIGR00487       165 VVAADDGVMPQTI--EAISHAKAA--NVPIIVAINKIDKPEA-------------NPDRVKQELSEYGLVPEDWGGDTIF  227 (587)
T ss_pred             EEECCCCCCHhHH--HHHHHHHHc--CCCEEEEEECcccccC-------------CHHHHHHHHHHhhhhHHhcCCCceE
Confidence            9999875433332  222233333  7999999999999642             11222222222       22 1368


Q ss_pred             EEeccCCCCCHHHHHHHHHH
Q 029144          156 IECSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~  175 (198)
                      +++||++|.|++++|+++..
T Consensus       228 v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       228 VPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             EEEECCCCCChHHHHHhhhh
Confidence            99999999999999999875

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.89  E-value=6.7e-22  Score=161.55  Aligned_cols=160  Identities=21%  Similarity=0.216  Sum_probs=114.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCC-------CCCCCCCcc------cccee---EEEEE---CCeEEEEEEEeCCCccC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNT-------FPTDYVPTV------FDNFS---ANVVV---DGSTVNLGLWDTAGQED   66 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~-------~~~~~~~t~------~~~~~---~~~~~---~~~~~~l~i~D~~G~~~   66 (198)
                      .=+|+++|+.++|||||+++++...       +...+..+.      +..+.   ..+.+   ++..+.+++|||||+..
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            3489999999999999999998642       112222221      11121   11222   45668899999999999


Q ss_pred             cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144           67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL  146 (198)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (198)
                      |...+..+++.+|++++|+|++++.+.+.. ..|...+.   .++|+++|+||+|+....            ......++
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------~~~~~~el  146 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------PERVKKEI  146 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------HHHHHHHH
Confidence            999899999999999999999998777665 44443332   278999999999996421            11222344


Q ss_pred             HHHcCCC--EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          147 RKLIGAP--VYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       147 ~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ....+..  .++++||++|.|++++|++|.+.+..+.
T Consensus       147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~  183 (595)
T TIGR01393       147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK  183 (595)
T ss_pred             HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence            4444442  4899999999999999999999886553

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.89  E-value=2.9e-22  Score=138.70  Aligned_cols=142  Identities=20%  Similarity=0.148  Sum_probs=98.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc----ccccCCCcEEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----PLSYRGADVFLL   83 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----~~~~~~~~~~i~   83 (198)
                      +|+++|.+|+|||||++++.+.....  ..+      ..+.+...    .+||+||.......+    ...+.++|++++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~------~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~   70 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKT------QAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY   70 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccc------eEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence            79999999999999999977543111  111      11222222    279999973222111    123678999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC-CEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA-PVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~  162 (198)
                      |+|+++.+++..   .|+..+   ..+.|+++++||+|+.+             ...+...+++...+. .+++++||++
T Consensus        71 v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~-------------~~~~~~~~~~~~~~~~~p~~~~Sa~~  131 (158)
T PRK15467         71 VHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPD-------------ADVAATRKLLLETGFEEPIFELNSHD  131 (158)
T ss_pred             EEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCc-------------ccHHHHHHHHHHcCCCCCEEEEECCC
Confidence            999998876532   222222   23689999999999954             234556677767764 3799999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029144          163 QQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (198)
                      ++|++++|+++.+.+...
T Consensus       132 g~gi~~l~~~l~~~~~~~  149 (158)
T PRK15467        132 PQSVQQLVDYLASLTKQE  149 (158)
T ss_pred             ccCHHHHHHHHHHhchhh
Confidence            999999999998877443

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=3e-22  Score=143.14  Aligned_cols=161  Identities=16%  Similarity=0.126  Sum_probs=101.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC----CCCCCC----CCccccceeEEEEEC------------CeEEEEEEEeCCCccC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN----TFPTDY----VPTVFDNFSANVVVD------------GSTVNLGLWDTAGQED   66 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~----~~~~~~----~~t~~~~~~~~~~~~------------~~~~~l~i~D~~G~~~   66 (198)
                      ++|+++|++++|||||++++...    .+...+    ..++.........+.            +..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999863    111111    111211111112222            2357888999999976


Q ss_pred             cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144           67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL  146 (198)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (198)
                      +..........+|++++|+|++++...... ..+. .....  +.|+++|+||+|+.....        .....++..+.
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~~--~~~~iiv~NK~Dl~~~~~--------~~~~~~~~~~~  148 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEIL--CKKLIVVLNKIDLIPEEE--------RERKIEKMKKK  148 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence            544333445678999999999886544433 2221 22222  679999999999964321        00112222221


Q ss_pred             -HHH------cCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          147 -RKL------IGAPVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       147 -~~~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                       ...      .+. +++++||++|.|++++++++.+.+..+
T Consensus       149 l~~~~~~~~~~~~-~vi~iSa~~g~gi~~L~~~l~~~~~~~  188 (192)
T cd01889         149 LQKTLEKTRFKNS-PIIPVSAKPGGGEAELGKDLNNLIVLP  188 (192)
T ss_pred             HHHHHHhcCcCCC-CEEEEeccCCCCHHHHHHHHHhccccc
Confidence             111      233 699999999999999999999887543

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK00089 era GTPase Era; Reviewed

Probab=99.89  E-value=1.3e-21  Score=148.36  Aligned_cols=161  Identities=22%  Similarity=0.232  Sum_probs=111.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc--------cccccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN--------RLRPLS   74 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------~~~~~~   74 (198)
                      +.-.|+++|.+|+|||||++++++..+.  .....|+..........++  ..+.+|||||.....        ......
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            4567999999999999999999987653  2233344443333333333  678899999975432        122335


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      +.++|++++|+|++++.+.  ....+...+...  +.|+++|+||+|+.....          ........+....+...
T Consensus        82 ~~~~D~il~vvd~~~~~~~--~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~----------~l~~~~~~l~~~~~~~~  147 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIGP--GDEFILEKLKKV--KTPVILVLNKIDLVKDKE----------ELLPLLEELSELMDFAE  147 (292)
T ss_pred             HhcCCEEEEEEeCCCCCCh--hHHHHHHHHhhc--CCCEEEEEECCcCCCCHH----------HHHHHHHHHHhhCCCCe
Confidence            6789999999999883322  213444455433  789999999999974321          23344455555556667


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ++++||+++.|++++++++.+.+....
T Consensus       148 i~~iSA~~~~gv~~L~~~L~~~l~~~~  174 (292)
T PRK00089        148 IVPISALKGDNVDELLDVIAKYLPEGP  174 (292)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence            999999999999999999999885543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=6.7e-22  Score=157.72  Aligned_cols=150  Identities=23%  Similarity=0.230  Sum_probs=109.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccC--------cccccccccC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYR   76 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~~   76 (198)
                      .+|+++|.+|+|||||++++.+..  +...+.+++.+.......+++  ..+.+|||||+..        +......++.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            589999999999999999999775  345555566666666667777  6678999999876        1222345678


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      ++|++++|+|+.++.+..+.  .+...+...  +.|+++|+||+|+.+..              ....++ ...+...++
T Consensus        80 ~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~--------------~~~~~~-~~lg~~~~~  140 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE--------------ADAYEF-YSLGLGEPY  140 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch--------------hhHHHH-HhcCCCCCE
Confidence            89999999999886554332  333444444  79999999999974321              122222 345654589


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029144          157 ECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      ++||++|.|++++++.+.+..
T Consensus       141 ~iSa~~g~gv~~l~~~I~~~~  161 (435)
T PRK00093        141 PISAEHGRGIGDLLDAILEEL  161 (435)
T ss_pred             EEEeeCCCCHHHHHHHHHhhC
Confidence            999999999999999998844

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=1.6e-22  Score=137.71  Aligned_cols=161  Identities=27%  Similarity=0.421  Sum_probs=139.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCe-EEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .++++++|..|.||||++++++.+.+...+.+|.+..........+. .+.+..|||+|++.+..+...++-++.+.+++
T Consensus        10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim   89 (216)
T KOG0096|consen   10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM   89 (216)
T ss_pred             eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence            68999999999999999999999999999999998777666655443 59999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      ||+...-++... ..|...+.+.+.++|+++++||.|.....            .......+-+..++ .|++.||+++.
T Consensus        90 FdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkknl-~y~~iSaksn~  155 (216)
T KOG0096|consen   90 FDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKNL-QYYEISAKSNY  155 (216)
T ss_pred             eeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------cccccceeeecccc-eeEEeeccccc
Confidence            999999999999 89999999999999999999999997643            12233344555666 79999999999


Q ss_pred             CHHHHHHHHHHHHcCC
Q 029144          165 NVKAVFDAAIKVVLQP  180 (198)
Q Consensus       165 ~i~~~~~~i~~~~~~~  180 (198)
                      |.+..|-++++.+.-.
T Consensus       156 NfekPFl~LarKl~G~  171 (216)
T KOG0096|consen  156 NFERPFLWLARKLTGD  171 (216)
T ss_pred             ccccchHHHhhhhcCC
Confidence            9999999999988543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.88  E-value=7.1e-22  Score=157.37  Aligned_cols=152  Identities=22%  Similarity=0.270  Sum_probs=112.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccC--------cccccccccCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNRLRPLSYRG   77 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~~~   77 (198)
                      +|+++|.+|+|||||++++.+..  +..++.+++.+.......+++.  .+.+|||||...        +......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            58999999999999999999865  3445556666666666677774  477999999632        23344556788


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144           78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE  157 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (198)
                      +|++++|+|+.++.+..+.  .+...++..  +.|+++|+||+|+.+...           .   ..+ ....+..++++
T Consensus        79 ad~vl~vvD~~~~~~~~d~--~i~~~l~~~--~~piilVvNK~D~~~~~~-----------~---~~~-~~~lg~~~~~~  139 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDE--EIAKWLRKS--GKPVILVANKIDGKKEDA-----------V---AAE-FYSLGFGEPIP  139 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHH--HHHHHHHHh--CCCEEEEEECccCCcccc-----------c---HHH-HHhcCCCCeEE
Confidence            9999999999876554432  445555554  799999999999965321           1   112 34556667899


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      +||.+|.|+.++++.+.+.+...
T Consensus       140 vSa~~g~gv~~ll~~i~~~l~~~  162 (429)
T TIGR03594       140 ISAEHGRGIGDLLDAILELLPEE  162 (429)
T ss_pred             EeCCcCCChHHHHHHHHHhcCcc
Confidence            99999999999999999887553

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.88  E-value=1.1e-21  Score=162.06  Aligned_cols=161  Identities=15%  Similarity=0.204  Sum_probs=110.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc---cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      .+...|+++|+.++|||||++++....+.....+...   ..+......++....+.||||||++.|..++...+..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            3567999999999999999999998766543332221   1122222333445788899999999999999889999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH---HHHHcC-CCEEE
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE---LRKLIG-APVYI  156 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~  156 (198)
                      +++|+|++++...+.. ..| ..+...  ++|+++++||+|+.....         .....++..   +...++ ..+++
T Consensus       322 aILVVDA~dGv~~QT~-E~I-~~~k~~--~iPiIVViNKiDl~~~~~---------e~v~~eL~~~~ll~e~~g~~vpvv  388 (742)
T CHL00189        322 AILIIAADDGVKPQTI-EAI-NYIQAA--NVPIIVAINKIDKANANT---------ERIKQQLAKYNLIPEKWGGDTPMI  388 (742)
T ss_pred             EEEEEECcCCCChhhH-HHH-HHHHhc--CceEEEEEECCCccccCH---------HHHHHHHHHhccchHhhCCCceEE
Confidence            9999999885433332 222 233333  799999999999965321         000111111   122222 24799


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029144          157 ECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      ++||++|.|++++++.+....
T Consensus       389 ~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        389 PISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             EEECCCCCCHHHHHHhhhhhh
Confidence            999999999999999998764

>COG1159 Era GTPase [General function prediction only]

Probab=99.88  E-value=1.9e-21  Score=142.31  Aligned_cols=165  Identities=17%  Similarity=0.173  Sum_probs=123.1

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc--------ccc
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN--------RLR   71 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------~~~   71 (198)
                      ...+.--|+++|.||+|||||+|++++.++  ..+-..|+...+...++.++  .++.|+||||...-.        ...
T Consensus         2 ~~~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a   79 (298)
T COG1159           2 MKFKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAA   79 (298)
T ss_pred             CCceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHH
Confidence            344566899999999999999999998854  44555677777777777765  566799999953322        223


Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      ...+..+|+++||+|++.+....+  ...++.+...  +.|+++++||+|...+..          .-......+.....
T Consensus        80 ~~sl~dvDlilfvvd~~~~~~~~d--~~il~~lk~~--~~pvil~iNKID~~~~~~----------~l~~~~~~~~~~~~  145 (298)
T COG1159          80 RSALKDVDLILFVVDADEGWGPGD--EFILEQLKKT--KTPVILVVNKIDKVKPKT----------VLLKLIAFLKKLLP  145 (298)
T ss_pred             HHHhccCcEEEEEEeccccCCccH--HHHHHHHhhc--CCCeEEEEEccccCCcHH----------HHHHHHHHHHhhCC
Confidence            345778999999999988655433  3555566653  789999999999976542          12334444555567


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      +...+++||++|.|++.+.+.+...+.....
T Consensus       146 f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~  176 (298)
T COG1159         146 FKEIVPISALKGDNVDTLLEIIKEYLPEGPW  176 (298)
T ss_pred             cceEEEeeccccCCHHHHHHHHHHhCCCCCC
Confidence            7689999999999999999999999876554

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.88  E-value=2.2e-21  Score=139.05  Aligned_cols=162  Identities=19%  Similarity=0.129  Sum_probs=103.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCcc----------Ccccccc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLRP   72 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~   72 (198)
                      ++...+|+++|.+|+|||||++++++..+...+.++.+.........-  ...+.+||+||..          .+.....
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            446789999999999999999999987644444444432221111111  2568899999953          2222223


Q ss_pred             cccC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144           73 LSYR---GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL  149 (198)
Q Consensus        73 ~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (198)
                      .+++   .++++++|+|.+++.+....  .+...+...  +.|+++++||+|+.+...        .....+.+......
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~~--~~~~iiv~nK~Dl~~~~~--------~~~~~~~i~~~l~~  166 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKEY--GIPVLIVLTKADKLKKGE--------RKKQLKKVRKALKF  166 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHHc--CCcEEEEEECcccCCHHH--------HHHHHHHHHHHHHh
Confidence            3333   34678889998876544332  233334333  789999999999965321        00122233344433


Q ss_pred             cCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          150 IGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ... +++++||+++.|++++++.|.+.+..
T Consensus       167 ~~~-~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        167 GDD-EVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             cCC-ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            334 68999999999999999999887643

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=3.5e-21  Score=150.90  Aligned_cols=155  Identities=21%  Similarity=0.223  Sum_probs=110.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEEC-CeEEEEEEEeCCCccCcc----cccccc---cCCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYN----RLRPLS---YRGA   78 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~----~~~~~~---~~~~   78 (198)
                      .|+++|.++||||||++++.+... ...|..|+.......+.++ +  ..+.+||+||.....    .+...+   +..+
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~--~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG--RSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC--ceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            899999999999999999997642 2344455543333334444 3  457799999974322    222233   4568


Q ss_pred             cEEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC
Q 029144           79 DVFLLAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA  152 (198)
Q Consensus        79 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (198)
                      +++++|+|+++.   +.++.. ..|...+..+.   .+.|++||+||+|+...              .+....+....+.
T Consensus       238 ~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--------------~e~l~~l~~~l~~  302 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPEA--------------EENLEEFKEKLGP  302 (424)
T ss_pred             CEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcCC--------------HHHHHHHHHHhCC
Confidence            999999999864   556655 66777777654   37899999999998432              2334555555564


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          153 PVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                       +++++||+++.|++++++++.+.+...
T Consensus       303 -~i~~iSA~tgeGI~eL~~~L~~~l~~~  329 (424)
T PRK12297        303 -KVFPISALTGQGLDELLYAVAELLEET  329 (424)
T ss_pred             -cEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence             789999999999999999999887554

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.88  E-value=2.2e-21  Score=138.16  Aligned_cols=161  Identities=22%  Similarity=0.260  Sum_probs=110.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCC-------------CCcc------ccceeEEEEECCeEEEEEEEeCCCcc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY-------------VPTV------FDNFSANVVVDGSTVNLGLWDTAGQE   65 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~-------------~~t~------~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (198)
                      +..+|+++|+.++|||||+.+++...-....             .+..      ................+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            5689999999999999999999854321110             0000      00011222201334677899999999


Q ss_pred             CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-
Q 029144           66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-  144 (198)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-  144 (198)
                      .|.......+..+|++|+|+|+.++.....  .+.+..+...  ++|+++|+||+|+...+.         ....++.+ 
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~--~~~l~~~~~~--~~p~ivvlNK~D~~~~~~---------~~~~~~~~~  148 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT--EEHLKILREL--GIPIIVVLNKMDLIEKEL---------EEIIEEIKE  148 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH--HHHHHHHHHT--T-SEEEEEETCTSSHHHH---------HHHHHHHHH
T ss_pred             ceeecccceecccccceeeeeccccccccc--cccccccccc--ccceEEeeeeccchhhhH---------HHHHHHHHH
Confidence            998888788999999999999987755443  3555666666  899999999999974321         01222222 


Q ss_pred             HHHHHcC-----CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          145 ELRKLIG-----APVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       145 ~~~~~~~-----~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      .+.+..+     ..+++.+||.+|.|++++++.+.+.+.
T Consensus       149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            3444442     247999999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.88  E-value=8.2e-22  Score=139.34  Aligned_cols=152  Identities=16%  Similarity=0.136  Sum_probs=98.3

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEE-EEECCeEEEEEEEeCCCccC----------ccc
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWDTAGQED----------YNR   69 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~D~~G~~~----------~~~   69 (198)
                      |++.+..+|+++|.+|+|||||++++.+..+...+.++.+...... ...++   .+.+||+||...          +..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            3556789999999999999999999998764333334433222211 22232   477999999532          222


Q ss_pred             ccccccC---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144           70 LRPLSYR---GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL  146 (198)
Q Consensus        70 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (198)
                      ....+++   .++++++|+|++++.+....  .+...+...  +.|+++++||+|+.+...        .....+++++.
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~~--~~pviiv~nK~D~~~~~~--------~~~~~~~i~~~  157 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRER--GIPVLIVLTKADKLKKSE--------LNKQLKKIKKA  157 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCCHHH--------HHHHHHHHHHH
Confidence            2223443   35799999999886555443  344455544  799999999999965321        01233444555


Q ss_pred             HHHcCC-CEEEEeccCCCCCHH
Q 029144          147 RKLIGA-PVYIECSSKTQQNVK  167 (198)
Q Consensus       147 ~~~~~~-~~~~~~Sa~~~~~i~  167 (198)
                      ....+. ..+|++||++|+|++
T Consensus       158 l~~~~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       158 LKKDADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             HhhccCCCceEEEECCCCCCCC
Confidence            555432 269999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=4.9e-21  Score=151.92  Aligned_cols=161  Identities=16%  Similarity=0.136  Sum_probs=109.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc----c---cccccCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----L---RPLSYRG   77 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~   77 (198)
                      ..+|+|||.+|+|||||++++..... ..+|..|+.......+.+.+  ..+++||+||.....+    +   ....+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            35899999999999999999987543 23455566555555555665  5677999999632111    1   1123567


Q ss_pred             CcEEEEEEECCCh----hhHHHHHHHHHHHHhhhC------------CCCCEEEEeecCCcccccccccCCCCCccccHH
Q 029144           78 ADVFLLAFSLISK----ASYENVAKKWIPELRHYA------------PGVPIILVGTKLDLRDDKQFLADHPGAVPITTA  141 (198)
Q Consensus        78 ~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~------------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  141 (198)
                      ++++++|+|+++.    +.+.+. ..+...+..+.            .+.|++||+||+|+.+...           ..+
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-----------l~e  304 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-----------LAE  304 (500)
T ss_pred             cCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-----------HHH
Confidence            9999999999753    233333 33333343321            3689999999999965431           122


Q ss_pred             HHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          142 QGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      .........++ ++|++||+++.|+++++.+|.+.+...+
T Consensus       305 ~l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        305 FVRPELEARGW-PVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             HHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            23333344566 7999999999999999999999885543

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.87  E-value=5e-21  Score=159.38  Aligned_cols=158  Identities=17%  Similarity=0.234  Sum_probs=109.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      .++..|+++|+.++|||||+++|....+.....+... ......+.+++  ..++||||||++.|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            4678999999999999999999988766544333221 11123344555  56789999999999999988899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH---HHHHHcC-CCEEEEe
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE---ELRKLIG-APVYIEC  158 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~  158 (198)
                      +|+|++++..-+.. ..| ......  ++|+++++||+|+.....        ..+. .++.   .+...++ ..+++++
T Consensus       366 LVVdAddGv~~qT~-e~i-~~a~~~--~vPiIVviNKiDl~~a~~--------e~V~-~eL~~~~~~~e~~g~~vp~vpv  432 (787)
T PRK05306        366 LVVAADDGVMPQTI-EAI-NHAKAA--GVPIIVAINKIDKPGANP--------DRVK-QELSEYGLVPEEWGGDTIFVPV  432 (787)
T ss_pred             EEEECCCCCCHhHH-HHH-HHHHhc--CCcEEEEEECccccccCH--------HHHH-HHHHHhcccHHHhCCCceEEEE
Confidence            99999885433322 222 233333  799999999999964210        0011 1111   1122333 2379999


Q ss_pred             ccCCCCCHHHHHHHHHHH
Q 029144          159 SSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~  176 (198)
                      ||++|.|++++|++|...
T Consensus       433 SAktG~GI~eLle~I~~~  450 (787)
T PRK05306        433 SAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             eCCCCCCchHHHHhhhhh
Confidence            999999999999998764

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.87  E-value=2.5e-21  Score=139.40  Aligned_cols=116  Identities=19%  Similarity=0.152  Sum_probs=79.2

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP  133 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  133 (198)
                      ..+.|||+||++.|...+...+.++|++++|+|++++...... ...+..+... ...|+++|+||+|+.+...      
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t-~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~------  154 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQT-SEHLAALEIM-GLKHIIIVQNKIDLVKEEQ------  154 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcch-HHHHHHHHHc-CCCcEEEEEEchhccCHHH------
Confidence            6788999999999888877888899999999999874211111 1122223222 2357999999999965321      


Q ss_pred             CCccccHHHHHHHHHHc---CCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          134 GAVPITTAQGEELRKLI---GAPVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       134 ~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                        .....++.+++...+   +. +++++||++|.|++++|+.+.+.+..+
T Consensus       155 --~~~~~~~i~~~~~~~~~~~~-~i~~vSA~~g~gi~~L~~~l~~~l~~~  201 (203)
T cd01888         155 --ALENYEQIKKFVKGTIAENA-PIIPISAQLKYNIDVLLEYIVKKIPTP  201 (203)
T ss_pred             --HHHHHHHHHHHHhccccCCC-cEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence              001123334444332   33 689999999999999999999877654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK11058 GTPase HflX; Provisional

Probab=99.87  E-value=7e-21  Score=149.97  Aligned_cols=156  Identities=21%  Similarity=0.186  Sum_probs=106.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccCc--ccccc------cccCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--NRLRP------LSYRG   77 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--~~~~~------~~~~~   77 (198)
                      .+|+++|.+|+|||||+|++.+.... .+...++.+.....+.+.+. ..+.+|||||..+.  ...+.      ..+++
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999976532 23334444444445555442 14569999997432  11222      23578


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           78 ADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      +|++++|+|++++.++... ..|...+.... .+.|+++|+||+|+.+...           ..  ..  ....+.+.++
T Consensus       277 ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----------~~--~~--~~~~~~~~~v  340 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----------PR--ID--RDEENKPIRV  340 (426)
T ss_pred             CCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-----------HH--HH--HHhcCCCceE
Confidence            9999999999998877766 44444444332 3799999999999964311           10  11  1123443358


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      .+||++|.|++++++++.+.+..
T Consensus       341 ~ISAktG~GIdeL~e~I~~~l~~  363 (426)
T PRK11058        341 WLSAQTGAGIPLLFQALTERLSG  363 (426)
T ss_pred             EEeCCCCCCHHHHHHHHHHHhhh
Confidence            89999999999999999998743

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.87  E-value=2.6e-21  Score=161.88  Aligned_cols=158  Identities=23%  Similarity=0.250  Sum_probs=114.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccC----------ccccc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR   71 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~   71 (198)
                      +...+|+++|.+|+|||||++++++...  ..++.+|+.+.+...+.+++..  +.+|||||..+          |....
T Consensus       448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r  525 (712)
T PRK09518        448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLR  525 (712)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHH
Confidence            3458999999999999999999998763  4566777777776667777755  45999999642          11111


Q ss_pred             -ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-HHH-
Q 029144           72 -PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-LRK-  148 (198)
Q Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~-  148 (198)
                       ...++.+|++++|+|++++.+..+.  .+...+...  +.|+++|+||+|+.+..            ..+.... +.. 
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~--~i~~~~~~~--~~piIiV~NK~DL~~~~------------~~~~~~~~~~~~  589 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDL--KVMSMAVDA--GRALVLVFNKWDLMDEF------------RRQRLERLWKTE  589 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEEchhcCChh------------HHHHHHHHHHHh
Confidence             2346789999999999998888776  344444443  79999999999996532            1111111 111 


Q ss_pred             --HcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          149 --LIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       149 --~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                        .....+++.+||++|.|++++++.+.+.+..
T Consensus       590 l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        590 FDRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             ccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence              2233467889999999999999999998765

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=1.1e-20  Score=150.80  Aligned_cols=160  Identities=21%  Similarity=0.218  Sum_probs=110.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc-----------
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----------   71 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-----------   71 (198)
                      ..++|+++|.+|+|||||++++++..  ...+..+++.+.....+..++.  .+.+|||||........           
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ--KYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe--eEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            46899999999999999999999754  3344555665555555556664  45699999965432221           


Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      ...++.+|++++|+|++++.+..+.  .+...+...  +.|+++|+||+|+.+...        .....++........+
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~~--~~~~ivv~NK~Dl~~~~~--------~~~~~~~~~~~l~~~~  317 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALEA--GRALVIVVNKWDLVDEKT--------MEEFKKELRRRLPFLD  317 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCCCHHH--------HHHHHHHHHHhccccc
Confidence            2356789999999999998777655  444455444  799999999999974321        0011111111112223


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      ..+++++||+++.|++++++.+.+.+.
T Consensus       318 ~~~i~~~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        318 YAPIVFISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            347999999999999999999887653

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.86  E-value=8.8e-21  Score=154.88  Aligned_cols=161  Identities=20%  Similarity=0.172  Sum_probs=111.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC---CCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN---TFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~---~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +.|+++|+.++|||||+++|.+.   .+++++..+.. +.....+..++  ..+.+||+||++.|...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            46899999999999999999863   23333333222 22222344455  67889999999999888888889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC---CCEEEEe
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG---APVYIEC  158 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  158 (198)
                      +|+|++++...+..  +.+..+...  ++| +++|+||+|+.+...        .....+++..+....+   ..+++++
T Consensus        79 LVVDa~~G~~~qT~--ehl~il~~l--gi~~iIVVlNK~Dlv~~~~--------~~~~~~ei~~~l~~~~~~~~~~ii~v  146 (581)
T TIGR00475        79 LVVDADEGVMTQTG--EHLAVLDLL--GIPHTIVVITKADRVNEEE--------IKRTEMFMKQILNSYIFLKNAKIFKT  146 (581)
T ss_pred             EEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEECCCCCCHHH--------HHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence            99999884322221  222334333  677 999999999975431        0012344555555543   2379999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCC
Q 029144          159 SSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ||++|.|+++++..+.+.+....
T Consensus       147 SA~tG~GI~eL~~~L~~l~~~~~  169 (581)
T TIGR00475       147 SAKTGQGIGELKKELKNLLESLD  169 (581)
T ss_pred             eCCCCCCchhHHHHHHHHHHhCC
Confidence            99999999999999988765543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.86  E-value=1.5e-20  Score=153.75  Aligned_cols=164  Identities=19%  Similarity=0.199  Sum_probs=114.0

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhC--CCCC-----CCCCc------cccce---eEEEEE---CCeEEEEEEEeCC
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT-----DYVPT------VFDNF---SANVVV---DGSTVNLGLWDTA   62 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~-----~~~~t------~~~~~---~~~~~~---~~~~~~l~i~D~~   62 (198)
                      ..++.-+|+++|+.++|||||+.+++..  .+..     .+..+      .+..+   ...+.+   ++..+.+++||||
T Consensus         3 ~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTP   82 (600)
T PRK05433          3 DMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTP   82 (600)
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECC
Confidence            3445569999999999999999999863  2211     11000      01111   111222   4556889999999


Q ss_pred             CccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH
Q 029144           63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ  142 (198)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  142 (198)
                      |+.+|...+...++.+|++++|+|++++...+.. ..|.... .  .++|+++|+||+|+....            ....
T Consensus        83 Gh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~-~--~~lpiIvViNKiDl~~a~------------~~~v  146 (600)
T PRK05433         83 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLAL-E--NDLEIIPVLNKIDLPAAD------------PERV  146 (600)
T ss_pred             CcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHH-H--CCCCEEEEEECCCCCccc------------HHHH
Confidence            9999998888999999999999999987666554 3443332 2  278999999999996432            1112


Q ss_pred             HHHHHHHcCCC--EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          143 GEELRKLIGAP--VYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       143 ~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ..++....+..  .++++||++|.|+++++++|.+.+..+.
T Consensus       147 ~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~  187 (600)
T PRK05433        147 KQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK  187 (600)
T ss_pred             HHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence            23333334442  4899999999999999999999886554

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.86  E-value=8.5e-21  Score=154.27  Aligned_cols=169  Identities=16%  Similarity=0.129  Sum_probs=103.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc----ccceeEE-E------------EECCeEEEEEEEeCCCccCc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----FDNFSAN-V------------VVDGSTVNLGLWDTAGQEDY   67 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~----~~~~~~~-~------------~~~~~~~~l~i~D~~G~~~~   67 (198)
                      +.--|+++|++++|||||++++.+..+.....++.    +..+... .            .++.....+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            34569999999999999999999887654322211    1111110 0            00011123789999999999


Q ss_pred             ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCC-------CCCcccc-
Q 029144           68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADH-------PGAVPIT-  139 (198)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-------~~~~~~~-  139 (198)
                      ..++...++.+|++++|+|++++...+..  +.+..+...  +.|+++++||+|+.+........       .....+. 
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~--e~i~~l~~~--~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~  158 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQ--EALNILRMY--KTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ  158 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHH--HHHHHHHHc--CCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence            99998899999999999999874322222  122233333  78999999999996421000000       0000000 


Q ss_pred             ------HHHHHHHH-------------HHcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          140 ------TAQGEELR-------------KLIGAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       140 ------~~~~~~~~-------------~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                            .....++.             .-.+..+++++||++|+|+++++.++....
T Consensus       159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                  00000111             112234799999999999999999887543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=1.6e-20  Score=157.12  Aligned_cols=153  Identities=19%  Similarity=0.186  Sum_probs=107.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCc--------cccccccc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY--------NRLRPLSY   75 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~~   75 (198)
                      ..+|+++|.+|+|||||++++++...  ......++.+.......+++  ..+.+|||||.+..        ......++
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            46899999999999999999997643  34444444454454555566  45679999997632        22233457


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144           76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY  155 (198)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (198)
                      +.+|++++|+|+++.....+  ..|...++..  +.|+++|+||+|+....              .....+ ...+....
T Consensus       353 ~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~~--~~pvIlV~NK~D~~~~~--------------~~~~~~-~~lg~~~~  413 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTSTD--ERIVRMLRRA--GKPVVLAVNKIDDQASE--------------YDAAEF-WKLGLGEP  413 (712)
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHhc--CCCEEEEEECcccccch--------------hhHHHH-HHcCCCCe
Confidence            88999999999987533332  3566666654  89999999999985421              111222 12333346


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcC
Q 029144          156 IECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +++||++|.|++++|+++++.+..
T Consensus       414 ~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        414 YPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             EEEECCCCCCchHHHHHHHHhccc
Confidence            789999999999999999998855

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=2.4e-20  Score=145.38  Aligned_cols=160  Identities=19%  Similarity=0.183  Sum_probs=113.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc----c---cccccCCCc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----L---RPLSYRGAD   79 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~~~   79 (198)
                      .|.++|.||+|||||++++..... ...+..|+.......+.+.+. ..+.++|+||...-.+    +   ....+..++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~-~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE-RSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC-cEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            799999999999999999987543 344556666555555555432 2466999999743211    1   112467899


Q ss_pred             EEEEEEECC---ChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC-
Q 029144           80 VFLLAFSLI---SKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA-  152 (198)
Q Consensus        80 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (198)
                      ++++|+|++   +.+.++.. ..|...+..+.   .+.|+++|+||+|+.....           ..+....+....+. 
T Consensus       240 vlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-----------l~~~l~~l~~~~~~~  307 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-----------AEERAKAIVEALGWE  307 (390)
T ss_pred             EEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-----------HHHHHHHHHHHhCCC
Confidence            999999988   44555555 66777776654   3689999999999965331           22334444444443 


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          153 PVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      .+++.+||+++.|++++++.|.+.+...
T Consensus       308 ~~Vi~ISA~tg~GIdeLl~~I~~~L~~~  335 (390)
T PRK12298        308 GPVYLISAASGLGVKELCWDLMTFIEEN  335 (390)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence            1589999999999999999999988654

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.86  E-value=1.2e-20  Score=124.64  Aligned_cols=167  Identities=26%  Similarity=0.545  Sum_probs=135.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .+||.++|.+..|||||+-.+.++.+.+.+..+.+..+ .+.+.+++..+.+.+||.+|++++..+.+..-..+-+++|+
T Consensus        20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm   99 (205)
T KOG1673|consen   20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM   99 (205)
T ss_pred             EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence            68999999999999999999999998888777776554 67788899999999999999999999999888999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCC-CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      ||.+.+.++..+ .+|.++.+.... .+| ++|++|.|+.-+..     .+-......+++.+++-.++ +.|.+|+...
T Consensus       100 FDLt~r~TLnSi-~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp-----~e~Q~~I~~qar~YAk~mnA-sL~F~Sts~s  171 (205)
T KOG1673|consen  100 FDLTRRSTLNSI-KEWYRQARGLNKTAIP-ILVGTKYDLFIDLP-----PELQETISRQARKYAKVMNA-SLFFCSTSHS  171 (205)
T ss_pred             EecCchHHHHHH-HHHHHHHhccCCccce-EEeccchHhhhcCC-----HHHHHHHHHHHHHHHHHhCC-cEEEeecccc
Confidence            999999999999 888888777653 445 56799999753211     00001223456677888888 5778999999


Q ss_pred             CCHHHHHHHHHHHHcCC
Q 029144          164 QNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~~~  180 (198)
                      -|+..+|.-+..+++..
T Consensus       172 INv~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  172 INVQKIFKIVLAKLFNL  188 (205)
T ss_pred             ccHHHHHHHHHHHHhCC
Confidence            99999999888877654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.85  E-value=1e-20  Score=145.78  Aligned_cols=151  Identities=20%  Similarity=0.187  Sum_probs=119.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc---------ccccccc
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPLSY   75 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~~~~~   75 (198)
                      ..|+++|.||||||||+|++.+.  .+..++.+++.+.......+.+..  +.++||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999976  557888899999998888888855  6699999976432         2233457


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144           76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY  155 (198)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (198)
                      ..||++|||+|...+-+-.+.  .....++..  +.|+++|+||+|-...               +....-...+|+..+
T Consensus        82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~~--~kpviLvvNK~D~~~~---------------e~~~~efyslG~g~~  142 (444)
T COG1160          82 EEADVILFVVDGREGITPADE--EIAKILRRS--KKPVILVVNKIDNLKA---------------EELAYEFYSLGFGEP  142 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHH--HHHHHHHhc--CCCEEEEEEcccCchh---------------hhhHHHHHhcCCCCc
Confidence            789999999999876555543  555566644  7999999999999532               223333445666678


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHc
Q 029144          156 IECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      +.+||..|.|+.++++.+++.+.
T Consensus       143 ~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         143 VPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             eEeehhhccCHHHHHHHHHhhcC
Confidence            99999999999999999999984

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=1.1e-21  Score=131.90  Aligned_cols=164  Identities=21%  Similarity=0.300  Sum_probs=120.3

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCC---C----CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccccc
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT---F----PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL   73 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~---~----~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~   73 (198)
                      |.....+.|+++|..++|||||+.+.....   +    +....+|.+-... .+.+.+  ..+.+||.+||+..+++|..
T Consensus        12 ~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig-~i~v~~--~~l~fwdlgGQe~lrSlw~~   88 (197)
T KOG0076|consen   12 MFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG-TIEVCN--APLSFWDLGGQESLRSLWKK   88 (197)
T ss_pred             HhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec-ceeecc--ceeEEEEcCChHHHHHHHHH
Confidence            456678899999999999999997665321   1    1223344443332 233443  56779999999999999999


Q ss_pred             ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH---HH
Q 029144           74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR---KL  149 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---~~  149 (198)
                      ++..++++|+++|++|++-++.....+...+..-. .+.|+++.+||.|+.+..            ...++....   ..
T Consensus        89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~------------~~~El~~~~~~~e~  156 (197)
T KOG0076|consen   89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM------------EAAELDGVFGLAEL  156 (197)
T ss_pred             HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh------------hHHHHHHHhhhhhh
Confidence            99999999999999999888877444444444333 699999999999997642            233333222   22


Q ss_pred             ---cCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          150 ---IGAPVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       150 ---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                         ... ++.++||.+|+||++-..|++..+.+.
T Consensus       157 ~~~rd~-~~~pvSal~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  157 IPRRDN-PFQPVSALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             cCCccC-ccccchhhhcccHHHHHHHHHHHHhhc
Confidence               233 588899999999999999999988766

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.85  E-value=1.1e-19  Score=133.20  Aligned_cols=150  Identities=19%  Similarity=0.202  Sum_probs=103.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc-------ccccccCCCc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-------LRPLSYRGAD   79 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~~~~~~~~~~   79 (198)
                      +|+++|.+|+|||||++++.+... ...+..++.+.....+.+++  ..+++||+||......       .....++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999997652 34455555545555666666  5677999999754331       1224678999


Q ss_pred             EEEEEEECCChhh-HHHHHHHHHHH-----------------------------------------Hhh-----------
Q 029144           80 VFLLAFSLISKAS-YENVAKKWIPE-----------------------------------------LRH-----------  106 (198)
Q Consensus        80 ~~i~v~d~~~~~s-~~~~~~~~~~~-----------------------------------------~~~-----------  106 (198)
                      ++++|+|+++++. ...+ ...+..                                         +..           
T Consensus        80 ~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          80 LILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             EEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            9999999987653 3222 111110                                         100           


Q ss_pred             --------------hCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHH
Q 029144          107 --------------YAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA  172 (198)
Q Consensus       107 --------------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  172 (198)
                                    ...-.|+++|+||+|+.+               .+++..++..   +.++++||+++.|++++|+.
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---------------~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~  220 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS---------------IEELDLLARQ---PNSVVISAEKGLNLDELKER  220 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCCC---------------HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHH
Confidence                          011359999999999943               3444444443   25889999999999999999


Q ss_pred             HHHHHc
Q 029144          173 AIKVVL  178 (198)
Q Consensus       173 i~~~~~  178 (198)
                      +.+.+-
T Consensus       221 i~~~L~  226 (233)
T cd01896         221 IWDKLG  226 (233)
T ss_pred             HHHHhC
Confidence            998763

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.85  E-value=8.9e-21  Score=150.60  Aligned_cols=161  Identities=13%  Similarity=0.093  Sum_probs=102.8

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhC--CCCCC------------------------------CCCccccceeEEEE
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANVV   48 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~------------------------------~~~t~~~~~~~~~~   48 (198)
                      |++...++|+++|++++|||||+++|+..  .+...                              ...++.+....  .
T Consensus         1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~   78 (425)
T PRK12317          1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--K   78 (425)
T ss_pred             CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--E
Confidence            78899999999999999999999999843  21110                              01111111112  2


Q ss_pred             ECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc
Q 029144           49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  128 (198)
Q Consensus        49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  128 (198)
                      +....+.+.+|||||++.|.......+..+|++++|+|+++..+......++...+... ...|+++++||+|+.+... 
T Consensus        79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~-  156 (425)
T PRK12317         79 FETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDE-  156 (425)
T ss_pred             EecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccH-
Confidence            23334678899999998887655566789999999999987322212112233333332 2346999999999965210 


Q ss_pred             ccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHHHH
Q 029144          129 LADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKAVF  170 (198)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~  170 (198)
                           .......+++..+....++    .+++++||++|.|++++.
T Consensus       157 -----~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        157 -----KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             -----HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence                 0001223455555555553    369999999999998743

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.85  E-value=1.1e-20  Score=122.84  Aligned_cols=159  Identities=20%  Similarity=0.218  Sum_probs=120.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+++||+++|..++|||||+..+..... ....||.+..... +.++ ..+.+++||.+|+...+-.|..++.+.|++||
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn~k~-v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy   91 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFNTKK-VEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY   91 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcceEE-Eeec-CcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence            5789999999999999999998887653 3345555544333 3333 35889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHH-HH----HHHHcCCCEEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG-EE----LRKLIGAPVYIE  157 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~  157 (198)
                      |+|.+|...|+++..++.+.+.... ...|+.|.+||.|+.-.-            ..++. ..    ..+...+ .+-+
T Consensus        92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa------------~~eeia~klnl~~lrdRsw-hIq~  158 (185)
T KOG0074|consen   92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA------------KVEEIALKLNLAGLRDRSW-HIQE  158 (185)
T ss_pred             EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc------------chHHHHHhcchhhhhhceE-Eeee
Confidence            9999999999988677766665543 589999999999996431            22221 11    1112223 4667


Q ss_pred             eccCCCCCHHHHHHHHHHHHc
Q 029144          158 CSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      +||.+++|+....+++.....
T Consensus       159 csals~eg~~dg~~wv~sn~~  179 (185)
T KOG0074|consen  159 CSALSLEGSTDGSDWVQSNPE  179 (185)
T ss_pred             CccccccCccCcchhhhcCCC
Confidence            999999999999999877654

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.85  E-value=6e-20  Score=125.09  Aligned_cols=156  Identities=19%  Similarity=0.233  Sum_probs=118.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCC--------CCCC---cc-ccceeEEEEECCeEEEEEEEeCCCccCcccc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT--------DYVP---TV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRL   70 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~--------~~~~---t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~   70 (198)
                      .....||++.|+.++||||+++++.......        .+..   |+ ...+......++  ..+.+++||||++|..+
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~--~~v~LfgtPGq~RF~fm   84 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED--TGVHLFGTPGQERFKFM   84 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc--ceEEEecCCCcHHHHHH
Confidence            3467899999999999999999998765311        1111   11 112222122222  45669999999999999


Q ss_pred             cccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144           71 RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI  150 (198)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (198)
                      |...++++.++|+++|.+.+..+ .. ...+..+....+ +|++|++||.|+.+.            .+.++.+++....
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a------------~ppe~i~e~l~~~  149 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDA------------LPPEKIREALKLE  149 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCC------------CCHHHHHHHHHhc
Confidence            99999999999999999999888 33 566666666633 999999999999875            5666666655554


Q ss_pred             --CCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          151 --GAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       151 --~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                        .. +.++.+|.++++..+.++.+...
T Consensus       150 ~~~~-~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         150 LLSV-PVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             cCCC-ceeeeecccchhHHHHHHHHHhh
Confidence              44 79999999999999999998876

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.85  E-value=1.6e-20  Score=135.06  Aligned_cols=118  Identities=14%  Similarity=0.187  Sum_probs=87.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCC-cEEEEEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFLLAFS   86 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~-~~~i~v~d   86 (198)
                      +|+++|++|+|||||+++|..+.+...+.++............+....+.+||+||+.+++..+..+++++ +++|+|+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999999988766654443221111111113346788999999999988888888888 99999999


Q ss_pred             CCCh-hhHHHHHHHHHHHHhh---hCCCCCEEEEeecCCcccc
Q 029144           87 LISK-ASYENVAKKWIPELRH---YAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        87 ~~~~-~s~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~  125 (198)
                      +.+. .++......+...+..   ..++.|+++++||+|+...
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            9987 6777764444444432   2258999999999998754

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.85  E-value=4e-20  Score=142.50  Aligned_cols=160  Identities=23%  Similarity=0.256  Sum_probs=125.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccC----------ccccc-
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED----------YNRLR-   71 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~-   71 (198)
                      ..+||+++|.|++|||||+|++++.  .+..+..+|+.+.+...+.++++.+.  ++||+|..+          |.... 
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~--liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYV--LIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEE--EEECCCCCcccccccceEEEeehhh
Confidence            4699999999999999999999976  45677788999999999999997766  999999432          22221 


Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHH----HHHHHH
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTA----QGEELR  147 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~  147 (198)
                      ...+..++++++|+|++.+-+-++.  .....+...  +.+++||+||+|+.+.+.          ...+    ++....
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~----------~~~~~~k~~i~~~l  320 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDE----------ATMEEFKKKLRRKL  320 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchh----------hHHHHHHHHHHHHh
Confidence            2346779999999999998877765  666677766  899999999999977532          2333    333444


Q ss_pred             HHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          148 KLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ...++.+.+.+||+++.++.++|+.+.+.....
T Consensus       321 ~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         321 PFLDFAPIVFISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             ccccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence            445666899999999999999999998876443

>cd00880 Era_like Era (E

Probab=99.85  E-value=3.6e-20  Score=127.76  Aligned_cols=151  Identities=21%  Similarity=0.197  Sum_probs=102.2

Q ss_pred             EECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccc-------cccCCCcEE
Q 029144           11 TVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSYRGADVF   81 (198)
Q Consensus        11 vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~~~~~~~~   81 (198)
                      ++|++|+|||||++++.+....  ....+++............ ...+.+||+||...+.....       ..++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999876443  1222223222233332221 35678999999877654433       367889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH--HHHHHHHcCCCEEEEec
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ--GEELRKLIGAPVYIECS  159 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~S  159 (198)
                      ++|+|+++....... . +.......  +.|+++|+||+|+.....          .....  ...........+++++|
T Consensus        80 l~v~~~~~~~~~~~~-~-~~~~~~~~--~~~~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s  145 (163)
T cd00880          80 LFVVDADLRADEEEE-K-LLELLRER--GKPVLLVLNKIDLLPEEE----------EEELLELRLLILLLLLGLPVIAVS  145 (163)
T ss_pred             EEEEeCCCCCCHHHH-H-HHHHHHhc--CCeEEEEEEccccCChhh----------HHHHHHHHHhhcccccCCceEEEe
Confidence            999999998877766 2 33344333  899999999999976432          11111  11122222334799999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 029144          160 SKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~~  176 (198)
                      |.++.|++++++++.+.
T Consensus       146 a~~~~~v~~l~~~l~~~  162 (163)
T cd00880         146 ALTGEGIDELREALIEA  162 (163)
T ss_pred             eeccCCHHHHHHHHHhh
Confidence            99999999999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.85  E-value=3.6e-20  Score=151.45  Aligned_cols=145  Identities=17%  Similarity=0.235  Sum_probs=105.4

Q ss_pred             CCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc------ccccc--CCCcEEEE
Q 029144           13 GDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFLL   83 (198)
Q Consensus        13 G~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~~~~~i~   83 (198)
                      |.+|+|||||+|++.+... ..++..++.+.....+.+++.  .+.+||+||+.++...      ...++  +++|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998764 344444554444555666664  4679999999877654      22232  47899999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |+|+++.+..    ..+..++...  +.|+++|+||+|+.+...          +. .+.+.+.+..+. +++++||++|
T Consensus        79 VvDat~ler~----l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~----------i~-~d~~~L~~~lg~-pvv~tSA~tg  140 (591)
T TIGR00437        79 VVDASNLERN----LYLTLQLLEL--GIPMILALNLVDEAEKKG----------IR-IDEEKLEERLGV-PVVPTSATEG  140 (591)
T ss_pred             EecCCcchhh----HHHHHHHHhc--CCCEEEEEehhHHHHhCC----------Ch-hhHHHHHHHcCC-CEEEEECCCC
Confidence            9999875422    2222333333  799999999999975432          22 345677778887 7999999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029144          164 QNVKAVFDAAIKVV  177 (198)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (198)
                      +|++++++++.+.+
T Consensus       141 ~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       141 RGIERLKDAIRKAI  154 (591)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998864

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=5.3e-21  Score=124.73  Aligned_cols=159  Identities=15%  Similarity=0.161  Sum_probs=122.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ++..+|+++|..|+||||++.++.-++.+.+ .|+.+..... +  ..++..+++||.+|+...+-.|+-++.+.|++|+
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve~-v--~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVET-V--PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCccc-c--ccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            3789999999999999999998887775443 5666544332 2  2355788899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHH-----HHHHHcCCCEEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-----ELRKLIGAPVYIE  157 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  157 (198)
                      |+|.+|.+...-...++..+++... ....+++++||.|.....            ...++.     .-.++.-+ .+|+
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~------------t~~E~~~~L~l~~Lk~r~~-~Iv~  158 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL------------TRSEVLKMLGLQKLKDRIW-QIVK  158 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh------------hHHHHHHHhChHHHhhhee-EEEe
Confidence            9999998877666567777776654 567788999999997532            222221     11222234 7999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcC
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +||.+|+|+++.++|+++.+..
T Consensus       159 tSA~kg~Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  159 TSAVKGEGLDPAMDWLQRPLKS  180 (182)
T ss_pred             eccccccCCcHHHHHHHHHHhc
Confidence            9999999999999999987754

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.83  E-value=2.5e-22  Score=136.38  Aligned_cols=167  Identities=27%  Similarity=0.451  Sum_probs=140.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEECC-eEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      -++++|+|..|+|||+++.+++...+...|..|++..+. ..+.+++ ..+++++||..||++|..+..-+++.+.+..+
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i  104 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI  104 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence            468999999999999999999999999999999976663 3344444 44788999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--C---CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA--P---GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC  158 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (198)
                      |||+++..+|+.. ..|.+.+....  |   -.|+++.+||||....-.         ........++..+.|+...+++
T Consensus       105 Vfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---------~~~~~~~d~f~kengf~gwtet  174 (229)
T KOG4423|consen  105 VFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---------NEATRQFDNFKKENGFEGWTET  174 (229)
T ss_pred             EEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhh---------hhhHHHHHHHHhccCccceeee
Confidence            9999999999998 88888877655  2   467789999999976531         1123566778888999889999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          159 SSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      |++.+.+++|.-..+++.+.....
T Consensus       175 s~Kenkni~Ea~r~lVe~~lvnd~  198 (229)
T KOG4423|consen  175 SAKENKNIPEAQRELVEKILVNDE  198 (229)
T ss_pred             ccccccChhHHHHHHHHHHHhhcc
Confidence            999999999999999998876553

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.83  E-value=3.6e-19  Score=148.94  Aligned_cols=152  Identities=15%  Similarity=0.160  Sum_probs=110.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccc----------cc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP----------LS   74 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~----------~~   74 (198)
                      .++|+++|.+|+|||||+|++.+... ..++..++.+.....+..++  ..+.+||+||+.++.....          .+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~--~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCc--eEEEEEECCCccccccccccccHHHHHHHHH
Confidence            57899999999999999999987533 23444444443333344444  5677999999977653211          12


Q ss_pred             --cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC
Q 029144           75 --YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA  152 (198)
Q Consensus        75 --~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (198)
                        ...+|++++|+|+++.+..    ..+..++.+.  +.|+++++||+|+.+...          + ..+.+.+.+..+.
T Consensus        81 l~~~~aD~vI~VvDat~ler~----l~l~~ql~e~--giPvIvVlNK~Dl~~~~~----------i-~id~~~L~~~LG~  143 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERN----LYLTLQLLEL--GIPCIVALNMLDIAEKQN----------I-RIDIDALSARLGC  143 (772)
T ss_pred             HhccCCCEEEEEecCCcchhh----HHHHHHHHHc--CCCEEEEEEchhhhhccC----------c-HHHHHHHHHHhCC
Confidence              2478999999999885432    2344455554  899999999999975432          2 3455677778888


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          153 PVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                       +++++||.+++|++++.+.+.+..
T Consensus       144 -pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        144 -PVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             -CEEEEEeecCCCHHHHHHHHHHhh
Confidence             799999999999999999998765

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.83  E-value=8e-20  Score=121.80  Aligned_cols=136  Identities=21%  Similarity=0.221  Sum_probs=98.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCcc----CcccccccccCCCcEEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~~~~~~~~i~   83 (198)
                      ||+++|+.|+|||||+++|.+...  .+..|..      +.+     .=.++||||.-    .|.+.......+||++++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~------i~~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l   69 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQA------IEY-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVLL   69 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccce------eEe-----cccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence            799999999999999999998764  2222221      111     11379999952    222222333458999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      +.|++++.+.-.-  .+...+     +.|+|-|+||+|+..+.           ...+.++++...-|+...|++|+.+|
T Consensus        70 l~dat~~~~~~pP--~fa~~f-----~~pvIGVITK~Dl~~~~-----------~~i~~a~~~L~~aG~~~if~vS~~~~  131 (143)
T PF10662_consen   70 LQDATEPRSVFPP--GFASMF-----NKPVIGVITKIDLPSDD-----------ANIERAKKWLKNAGVKEIFEVSAVTG  131 (143)
T ss_pred             EecCCCCCccCCc--hhhccc-----CCCEEEEEECccCccch-----------hhHHHHHHHHHHcCCCCeEEEECCCC
Confidence            9999987654332  222221     68999999999998433           46678888888889988999999999


Q ss_pred             CCHHHHHHHHH
Q 029144          164 QNVKAVFDAAI  174 (198)
Q Consensus       164 ~~i~~~~~~i~  174 (198)
                      +|++++.++|-
T Consensus       132 eGi~eL~~~L~  142 (143)
T PF10662_consen  132 EGIEELKDYLE  142 (143)
T ss_pred             cCHHHHHHHHh
Confidence            99999998874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.83  E-value=7.3e-20  Score=145.38  Aligned_cols=157  Identities=13%  Similarity=0.070  Sum_probs=100.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhh--CCCCCC------------------------C------CCccccceeEEEEEC
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPTD------------------------Y------VPTVFDNFSANVVVD   50 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~--~~~~~~------------------------~------~~t~~~~~~~~~~~~   50 (198)
                      +...++|+++|+.++|||||+.+|+.  +.+...                        .      ...+.+...  ..+.
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~   81 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE   81 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence            34678999999999999999999985  222210                        0      000011111  1223


Q ss_pred             CeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeecCCcccccccc
Q 029144           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL  129 (198)
Q Consensus        51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  129 (198)
                      ...+.+.+||+||++.|.......+.++|++++|+|++++++.... ..++.... ......|+++|+||+|+.+...  
T Consensus        82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~~~iIVviNK~Dl~~~~~--  158 (426)
T TIGR00483        82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGINQLIVAINKMDSVNYDE--  158 (426)
T ss_pred             cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCCCeEEEEEEChhccCccH--
Confidence            3347788999999998876666677899999999999987543211 01111222 2223457999999999964211  


Q ss_pred             cCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHH
Q 029144          130 ADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKA  168 (198)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  168 (198)
                          .......+++..++...+.    .+++++||++|.|+.+
T Consensus       159 ----~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       159 ----EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             ----HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence                0011233456666666653    3699999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.82  E-value=2.5e-19  Score=138.48  Aligned_cols=153  Identities=24%  Similarity=0.288  Sum_probs=116.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc--------cccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLS   74 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~   74 (198)
                      .-++++++|.||+|||||+|.+.+.  .++.+..+|+.+.....+.+++  +.+.+.||+|...-...        ....
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            4589999999999999999999975  6688899999999999999999  66779999997543322        1245


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      +.+||.+++|+|++.+.+-.+.  ..+.   ....+.|+++|.||.|+.....               ........+. +
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~---------------~~~~~~~~~~-~  352 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIE---------------LESEKLANGD-A  352 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhcccccc---------------cchhhccCCC-c
Confidence            6789999999999987444443  2222   2234799999999999976531               1111111222 5


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ++.+|+++++|++.+.+.|.+.+...
T Consensus       353 ~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         353 IISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             eEEEEecCccCHHHHHHHHHHHHhhc
Confidence            89999999999999999999988766

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.82  E-value=2.7e-19  Score=146.10  Aligned_cols=158  Identities=16%  Similarity=0.172  Sum_probs=109.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhh--CCCCCCCCCc---------c---ccce-e--EEEEECCeEEEEEEEeCCCccCcccc
Q 029144            8 KCVTVGDGAVGKTCMLISYTS--NTFPTDYVPT---------V---FDNF-S--ANVVVDGSTVNLGLWDTAGQEDYNRL   70 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~--~~~~~~~~~t---------~---~~~~-~--~~~~~~~~~~~l~i~D~~G~~~~~~~   70 (198)
                      +|+++|+.++|||||+.+++.  +.+.......         .   +..+ .  ..+.+++  +.+++|||||+.+|...
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e   80 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE   80 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence            799999999999999999986  3332221100         0   1111 1  1233344  77889999999999988


Q ss_pred             cccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH--
Q 029144           71 RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK--  148 (198)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--  148 (198)
                      +...++.+|++++|+|+.++..-+ . ..|+..+...  ++|+++|+||+|+...+.         ....++...+..  
T Consensus        81 v~~~l~~aD~alLVVDa~~G~~~q-T-~~~l~~a~~~--~ip~IVviNKiD~~~a~~---------~~v~~ei~~l~~~~  147 (594)
T TIGR01394        81 VERVLGMVDGVLLLVDASEGPMPQ-T-RFVLKKALEL--GLKPIVVINKIDRPSARP---------DEVVDEVFDLFAEL  147 (594)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCcHH-H-HHHHHHHHHC--CCCEEEEEECCCCCCcCH---------HHHHHHHHHHHHhh
Confidence            888999999999999998754322 2 4555555555  799999999999965321         012233333332  


Q ss_pred             -----HcCCCEEEEeccCCCC----------CHHHHHHHHHHHHcCCC
Q 029144          149 -----LIGAPVYIECSSKTQQ----------NVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       149 -----~~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~  181 (198)
                           ...+ +++.+||++|.          |+..+|+.+++.+..+.
T Consensus       148 g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~  194 (594)
T TIGR01394       148 GADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK  194 (594)
T ss_pred             ccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence                 2234 68999999995          79999999999887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK10218 GTP-binding protein; Provisional

Probab=99.82  E-value=6.8e-19  Score=143.68  Aligned_cols=163  Identities=15%  Similarity=0.132  Sum_probs=112.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh--CCCCCCCC------------Cccccce-eEEEEECCeEEEEEEEeCCCccCccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYV------------PTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR   69 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~--~~~~~~~~------------~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~   69 (198)
                      +.-+|+++|+.++|||||+++++.  +.+.....            .+.+..+ .....+....+.+.+|||||+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            456999999999999999999996  44433211            1111111 22223334457888999999999999


Q ss_pred             ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144           70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL  149 (198)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (198)
                      .+..+++.+|++++|+|+.+....+..  .++..+...  ++|.++++||+|+.....         ....++...+...
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~~--gip~IVviNKiD~~~a~~---------~~vl~ei~~l~~~  150 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFAY--GLKPIVVINKVDRPGARP---------DWVVDQVFDLFVN  150 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHHc--CCCEEEEEECcCCCCCch---------hHHHHHHHHHHhc
Confidence            999999999999999999876444332  333343334  789999999999975421         0122233333221


Q ss_pred             -------cCCCEEEEeccCCCC----------CHHHHHHHHHHHHcCCC
Q 029144          150 -------IGAPVYIECSSKTQQ----------NVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       150 -------~~~~~~~~~Sa~~~~----------~i~~~~~~i~~~~~~~~  181 (198)
                             ..+ +++.+||.+|.          ++..+|+.|++.+..+.
T Consensus       151 l~~~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~  198 (607)
T PRK10218        151 LDATDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD  198 (607)
T ss_pred             cCccccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence                   234 58999999998          68999999999887654

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.81  E-value=2.1e-19  Score=129.88  Aligned_cols=151  Identities=17%  Similarity=0.107  Sum_probs=92.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC--CCCC------------------------C------CCccccceeEEEEECCeEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT--FPTD------------------------Y------VPTVFDNFSANVVVDGSTVN   55 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~--~~~~------------------------~------~~t~~~~~~~~~~~~~~~~~   55 (198)
                      +|+++|++|+|||||+++++...  +...                        .      ..++.+.....+..++  ..
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence            58999999999999999997532  1100                        0      1111111112222333  45


Q ss_pred             EEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCC
Q 029144           56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGA  135 (198)
Q Consensus        56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  135 (198)
                      +.+|||||+..|.......++.+|++++|+|++++..-...  .....+... ...++++|+||+|+.+...      ..
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~------~~  149 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSE------EV  149 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCH------HH
Confidence            67999999988876666678899999999999876433222  222222222 1245788999999964211      00


Q ss_pred             ccccHHHHHHHHHHcCC--CEEEEeccCCCCCHHHH
Q 029144          136 VPITTAQGEELRKLIGA--PVYIECSSKTQQNVKAV  169 (198)
Q Consensus       136 ~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~  169 (198)
                      ......+.+.+....+.  .+++++||++|.|+.+.
T Consensus       150 ~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         150 FEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            00122344555556654  24899999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.81  E-value=2.2e-19  Score=131.36  Aligned_cols=175  Identities=14%  Similarity=0.151  Sum_probs=112.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc--ccceeEEEEECCeEEEEEEEeCCCccCc------------cc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--FDNFSANVVVDGSTVNLGLWDTAGQEDY------------NR   69 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~l~i~D~~G~~~~------------~~   69 (198)
                      .+.++|+++|.||+|||||.|.+++..+........  .......++  ....++.|+||||.-.-            ..
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~t--s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIIT--SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEe--cCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            478999999999999999999999987755444333  333344444  34477889999993211            11


Q ss_pred             ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC------CCCCccccHHHH
Q 029144           70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD------HPGAVPITTAQG  143 (198)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~------~~~~~~~~~~~~  143 (198)
                      .....+.+||.+++|+|+++....-.  ...+..+..+. ++|-++|+||.|..........      .........+..
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~  224 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLH--PRVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ  224 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence            22345667999999999997433222  34455555443 7899999999999876442210      000000011222


Q ss_pred             HHHHHHc---------CC---CEEEEeccCCCCCHHHHHHHHHHHHcCCCcc
Q 029144          144 EELRKLI---------GA---PVYIECSSKTQQNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       144 ~~~~~~~---------~~---~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  183 (198)
                      +.+....         |+   ..+|.+||++|+|++++-++|+..+....-+
T Consensus       225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~  276 (379)
T KOG1423|consen  225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWK  276 (379)
T ss_pred             HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCC
Confidence            2222211         22   2378899999999999999999988665443

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.81  E-value=1.1e-18  Score=124.35  Aligned_cols=150  Identities=20%  Similarity=0.197  Sum_probs=96.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC-------C----CCCCCcc---ccce-eEEEEECCeEEEEEEEeCCCccCcccc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF-------P----TDYVPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL   70 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~-------~----~~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~   70 (198)
                      .++|+++|+.++|||||+++++....       .    -+..+..   +... .....+......+.+.||||+..|...
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~   81 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN   81 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence            47999999999999999999985310       0    0000000   0011 111222233456779999999888777


Q ss_pred             cccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144           71 RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL  149 (198)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (198)
                      ....+..+|++++|+|+..+..-..  ..++..+...  +.| +++++||+|+.....       ......+++..+...
T Consensus        82 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~-------~~~~~~~~i~~~l~~  150 (195)
T cd01884          82 MITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEE-------LLELVEMEVRELLSK  150 (195)
T ss_pred             HHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHH-------HHHHHHHHHHHHHHH
Confidence            7777889999999999987543332  3444455554  676 778999999964221       011223345555555


Q ss_pred             cCC----CEEEEeccCCCCCH
Q 029144          150 IGA----PVYIECSSKTQQNV  166 (198)
Q Consensus       150 ~~~----~~~~~~Sa~~~~~i  166 (198)
                      .++    .+++.+||++|.|+
T Consensus       151 ~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         151 YGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             hcccccCCeEEEeeCccccCC
Confidence            443    47999999999874

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.81  E-value=9.4e-19  Score=128.46  Aligned_cols=168  Identities=15%  Similarity=0.068  Sum_probs=108.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC--C------C-----CCCCcc---ccce-eEEEEECCeEEEEEEEeCCCccCcccc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTF--P------T-----DYVPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDYNRL   70 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~--~------~-----~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~   70 (198)
                      +|+++|+.|+|||||+++++...-  .      .     ++.+..   +..+ .....+......+.+|||||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999986311  0      0     000000   0001 111222223467889999999999888


Q ss_pred             cccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc---------cC----------
Q 029144           71 RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL---------AD----------  131 (198)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~---------~~----------  131 (198)
                      +...++.+|++++|+|++++.....  ..+...+...  +.|+++++||+|+.......         ..          
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~  156 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGL  156 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcE
Confidence            8889999999999999998755432  4555555555  89999999999997532100         00          


Q ss_pred             ----------------------------CCCCccccHHHHHHHH----HHcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          132 ----------------------------HPGAVPITTAQGEELR----KLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       132 ----------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                                                  .-+...++.+++....    ......|++-.||.++.|+..+++.+.+.+..
T Consensus       157 ~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p~  236 (237)
T cd04168         157 APNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFPT  236 (237)
T ss_pred             eeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcCC
Confidence                                        0001123334433222    22334467778999999999999999987743

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.81  E-value=7.9e-19  Score=122.38  Aligned_cols=155  Identities=17%  Similarity=0.102  Sum_probs=97.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEECCeEEEEEEEeCCCccCc----------cccccccc-
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQEDY----------NRLRPLSY-   75 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~----------~~~~~~~~-   75 (198)
                      .|+++|.+|+|||||++.+.++.......++...... .....+.   .+.+||+||....          ......++ 
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            4899999999999999999965554444444432221 1222222   6779999995432          22222233 


Q ss_pred             --CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-HcCC
Q 029144           76 --RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-LIGA  152 (198)
Q Consensus        76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  152 (198)
                        .+++++++++|..+..+....  .....+...  +.|+++++||+|+.....        ............. ....
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~--------~~~~~~~~~~~l~~~~~~  145 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSE--------LAKALKEIKKELKLFEID  145 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHH--------HHHHHHHHHHHHHhccCC
Confidence              246788999998866432221  233334444  689999999999964321        0011122222222 2344


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          153 PVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      .+++++||+++.+++++++.|.+.+
T Consensus       146 ~~~~~~Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         146 PPIILFSSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             CceEEEecCCCCCHHHHHHHHHHhC
Confidence            4789999999999999999998753

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.81  E-value=1e-18  Score=142.58  Aligned_cols=165  Identities=17%  Similarity=0.142  Sum_probs=101.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCC----ccccceeEEEEE---CCeE-----E-----EEEEEeCCCccC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP----TVFDNFSANVVV---DGST-----V-----NLGLWDTAGQED   66 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~----t~~~~~~~~~~~---~~~~-----~-----~l~i~D~~G~~~   66 (198)
                      .|+..|+++|+.++|||||++++.+..+......    +.+..+......   .+..     .     .+.||||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            4566799999999999999999987654333222    222111110000   0111     1     267999999999


Q ss_pred             cccccccccCCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC------CCCCcc
Q 029144           67 YNRLRPLSYRGADVFLLAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD------HPGAVP  137 (198)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~------~~~~~~  137 (198)
                      |..++...++.+|++++|+|+++   +.+++.+     ..+...  +.|+++++||+|+.+.-.....      ......
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-----~~~~~~--~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI-----NILKRR--KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-----HHHHHc--CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            99888888889999999999987   4444433     233333  7999999999998531100000      000000


Q ss_pred             ccHH-------HHHHHHHH--------------cCCCEEEEeccCCCCCHHHHHHHHHH
Q 029144          138 ITTA-------QGEELRKL--------------IGAPVYIECSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       138 ~~~~-------~~~~~~~~--------------~~~~~~~~~Sa~~~~~i~~~~~~i~~  175 (198)
                      ...+       +.......              .+..+++++||.+|.|+++++..+..
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence            0000       01111111              12346899999999999999988865

>cd04167 Snu114p Snu114p subfamily

Probab=99.81  E-value=4.9e-19  Score=128.46  Aligned_cols=112  Identities=21%  Similarity=0.261  Sum_probs=79.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCC-----------CCCcc------ccce---eEEEEE---CCeEEEEEEEeCCCc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTD-----------YVPTV------FDNF---SANVVV---DGSTVNLGLWDTAGQ   64 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~-----------~~~t~------~~~~---~~~~~~---~~~~~~l~i~D~~G~   64 (198)
                      +|+++|+.++|||||+.+++.......           +..+.      +..+   .....+   ++..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            589999999999999999987543221           00110      0011   011111   345688999999999


Q ss_pred             cCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144           65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (198)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  123 (198)
                      ..|.......+..+|++++|+|+.+..+...  ..++......  +.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~~--~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAILE--GLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECcccC
Confidence            9998878888899999999999988766543  2444444333  69999999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.80  E-value=1.4e-18  Score=142.60  Aligned_cols=158  Identities=20%  Similarity=0.200  Sum_probs=103.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC---CCCCCC-CccccceeEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT---FPTDYV-PTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~---~~~~~~-~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      -|.++|+.++|||||++++.+..   +.++.. ..+.+........ ++  ..+.+||+||++.|.......+.++|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            47899999999999999998532   222211 1111111111112 23  34679999999999777777788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC--CEEEEec
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA--PVYIECS  159 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~S  159 (198)
                      +|+|++++..-+.  .+.+..+...  +.| +++|+||+|+.+...        .....++...+....++  .+++++|
T Consensus        80 LVVda~eg~~~qT--~ehl~il~~l--gi~~iIVVlNKiDlv~~~~--------~~~v~~ei~~~l~~~~~~~~~ii~VS  147 (614)
T PRK10512         80 LVVACDDGVMAQT--REHLAILQLT--GNPMLTVALTKADRVDEAR--------IAEVRRQVKAVLREYGFAEAKLFVTA  147 (614)
T ss_pred             EEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEECCccCCHHH--------HHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence            9999987533222  2333444443  556 579999999975321        00123444555544442  3799999


Q ss_pred             cCCCCCHHHHHHHHHHHHcC
Q 029144          160 SKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~  179 (198)
                      |++|.|++++++.|.+....
T Consensus       148 A~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        148 ATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             CCCCCCCHHHHHHHHHhhcc
Confidence            99999999999999876544

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.80  E-value=1.5e-19  Score=142.07  Aligned_cols=165  Identities=27%  Similarity=0.390  Sum_probs=124.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc-ccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      .+.+||+++|..|+|||||+.++....+++.-.+.. ...++..++.+.  +...+.|++..+.-+.....-++.||++.
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~--vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPEN--VPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCc--CceEEEecccccchhHHHHHHHhhcCEEE
Confidence            368999999999999999999999999877644333 222334444444  44679999865544444456788999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHH-HHHHHHHc-CCCEEEE
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ-GEELRKLI-GAPVYIE  157 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~  157 (198)
                      +||+.+++.+++.+...|+..++...   .++|+|+|+||+|......          .+.+. ...+..++ .+-.+++
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~----------~s~e~~~~pim~~f~EiEtcie  154 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNEN----------NSDEVNTLPIMIAFAEIETCIE  154 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccc----------cchhHHHHHHHHHhHHHHHHHh
Confidence            99999999999999999999999988   6999999999999987643          11121 11222221 2224799


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      |||++..++.++|....++++.+
T Consensus       155 cSA~~~~n~~e~fYyaqKaVihP  177 (625)
T KOG1707|consen  155 CSALTLANVSELFYYAQKAVIHP  177 (625)
T ss_pred             hhhhhhhhhHhhhhhhhheeecc
Confidence            99999999999999998887553

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.80  E-value=7.7e-19  Score=138.49  Aligned_cols=163  Identities=18%  Similarity=0.110  Sum_probs=103.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCc------cccc-----------------eeEEEEECC------eEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT------VFDN-----------------FSANVVVDG------STVN   55 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t------~~~~-----------------~~~~~~~~~------~~~~   55 (198)
                      ..++|+++|+.++|||||++++..... ..+...      ....                 +......++      ....
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~-d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGVWT-DTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCeec-ccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            568999999999999999998864321 110000      0000                 000000011      1357


Q ss_pred             EEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCC
Q 029144           56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGA  135 (198)
Q Consensus        56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  135 (198)
                      +.+||+||++.|...+......+|++++|+|++++...... .+.+..+... ...|+++++||+|+.+...        
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~~-gi~~iIVvvNK~Dl~~~~~--------  151 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEII-GIKNIVIVQNKIDLVSKEK--------  151 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHHc-CCCeEEEEEEccccCCHHH--------
Confidence            88999999999988877778889999999999865311111 2222233322 2357899999999975321        


Q ss_pred             ccccHHHHHHHHHHc---CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          136 VPITTAQGEELRKLI---GAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       136 ~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      .....+++..+....   +. +++++||++|+|+++++++|...+..
T Consensus       152 ~~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~~  197 (406)
T TIGR03680       152 ALENYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIPT  197 (406)
T ss_pred             HHHHHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCCC
Confidence            001123334444332   33 79999999999999999999987653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.80  E-value=3e-19  Score=129.44  Aligned_cols=167  Identities=19%  Similarity=0.269  Sum_probs=102.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCC---CccccceeEEEEECCeEEEEEEEeCCCccCccc-----ccccccCCCc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSYRGAD   79 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~~~~~~~   79 (198)
                      ||+++|++++||||+.+.++++..+.+..   +|...  .....-....+.+++||+||+..+..     .....+++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~v--e~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~   78 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDV--EKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG   78 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SE--EEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCc--eEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence            79999999999999999998876544322   22211  11111122336788999999976543     3466789999


Q ss_pred             EEEEEEECCChhhHHHHHHHH---HHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC--CCE
Q 029144           80 VFLLAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG--APV  154 (198)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  154 (198)
                      ++|||+|+.+.+-.+++ ..+   +..+....|+..+.+.++|+|+..+...    ........+...+.+...+  ...
T Consensus        79 ~LIyV~D~qs~~~~~~l-~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r----~~~~~~~~~~i~~~~~~~~~~~~~  153 (232)
T PF04670_consen   79 VLIYVFDAQSDDYDEDL-AYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDER----EEIFRDIQQRIRDELEDLGIEDIT  153 (232)
T ss_dssp             EEEEEEETT-STCHHHH-HHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHH----HHHHHHHHHHHHHHHHHTT-TSEE
T ss_pred             EEEEEEEcccccHHHHH-HHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHH----HHHHHHHHHHHHHHhhhccccceE
Confidence            99999999955544443 444   4455556689999999999999754320    0000011222333344444  126


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      ++.+|..+ +.+.+.+..+++.+.....
T Consensus       154 ~~~TSI~D-~Sly~A~S~Ivq~LiP~~~  180 (232)
T PF04670_consen  154 FFLTSIWD-ESLYEAWSKIVQKLIPNLS  180 (232)
T ss_dssp             EEEE-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred             EEeccCcC-cHHHHHHHHHHHHHcccHH
Confidence            77788777 7999999999999875433

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.79  E-value=5e-18  Score=123.56  Aligned_cols=154  Identities=16%  Similarity=0.140  Sum_probs=98.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc------------------c-ce--e------------------EEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF------------------D-NF--S------------------ANVV   48 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~------------------~-~~--~------------------~~~~   48 (198)
                      ||+++|+.++|||||+.++..+.+.........                  . .+  .                  ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999997655331100000                  0 00  0                  0011


Q ss_pred             ECCeEEEEEEEeCCCccCcccccccccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccc
Q 029144           49 VDGSTVNLGLWDTAGQEDYNRLRPLSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK  126 (198)
Q Consensus        49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  126 (198)
                      ..  ...+.+.|+||++.|.......+.  .+|++++|+|+..+..-.+  ..++..+...  ++|+++|+||+|+.+..
T Consensus        81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~  154 (224)
T cd04165          81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPAN  154 (224)
T ss_pred             eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHH
Confidence            12  356779999999988665444443  6899999999987654333  4555666655  79999999999986532


Q ss_pred             ccccCCCCCccccHHHHHHHHHH-------------------------cCCCEEEEeccCCCCCHHHHHHHHHH
Q 029144          127 QFLADHPGAVPITTAQGEELRKL-------------------------IGAPVYIECSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~Sa~~~~~i~~~~~~i~~  175 (198)
                      .        .....++...+...                         ....++|.+||.+|.|++++...|..
T Consensus       155 ~--------~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         155 I--------LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             H--------HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            1        00111222222221                         12347899999999999999877643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.79  E-value=2.5e-18  Score=135.57  Aligned_cols=165  Identities=16%  Similarity=0.074  Sum_probs=102.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCC----CC-ccccce-----------------eEEEEEC------CeEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VP-TVFDNF-----------------SANVVVD------GSTVN   55 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~----~~-t~~~~~-----------------~~~~~~~------~~~~~   55 (198)
                      ...++|+++|+.++|||||+.++.........    .. |....+                 ......+      +....
T Consensus         7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (411)
T PRK04000          7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR   86 (411)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence            45799999999999999999888542111100    00 110000                 0000001      01357


Q ss_pred             EEEEeCCCccCcccccccccCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCC
Q 029144           56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPG  134 (198)
Q Consensus        56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~  134 (198)
                      +.+||+||++.|..........+|++++|+|++++. ..+.. . .+..+... ...|+++|+||+|+.+...       
T Consensus        87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~-~l~~l~~~-~i~~iiVVlNK~Dl~~~~~-------  156 (411)
T PRK04000         87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-E-HLMALDII-GIKNIVIVQNKIDLVSKER-------  156 (411)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-H-HHHHHHHc-CCCcEEEEEEeeccccchh-------
Confidence            889999999988766555667789999999999653 22221 1 22233222 1347899999999975321       


Q ss_pred             CccccHHHHHHHHHHc--CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          135 AVPITTAQGEELRKLI--GAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       135 ~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                       .....++...+....  ...+++++||+++.|++++++.|.+.+..
T Consensus       157 -~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~  202 (411)
T PRK04000        157 -ALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT  202 (411)
T ss_pred             -HHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence             001223444444332  12378999999999999999999987654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.77  E-value=2.2e-18  Score=125.43  Aligned_cols=152  Identities=16%  Similarity=0.064  Sum_probs=90.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC--CCCC------------------------CCCC------ccccceeEEEEECCeEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVP------TVFDNFSANVVVDGSTVN   55 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~--~~~~------------------------~~~~------t~~~~~~~~~~~~~~~~~   55 (198)
                      +|+++|+.++|||||+.+|+..  .+..                        ++.+      ++.+.....+..++  ..
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence            5899999999999999988642  1110                        0000      11111122233344  67


Q ss_pred             EEEEeCCCccCcccccccccCCCcEEEEEEECCChhh------HHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc
Q 029144           56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS------YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL  129 (198)
Q Consensus        56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  129 (198)
                      +.+||+||+..|...+...++.+|++++|+|++++..      .... ........ .....|+++++||+|+.....  
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~iiivvNK~Dl~~~~~--  154 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQT-REHALLAR-TLGVKQLIVAVNKMDDVTVNW--  154 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccch-HHHHHHHH-HcCCCeEEEEEEccccccccc--
Confidence            7899999998877666667788999999999988521      1111 12222222 222468999999999973210  


Q ss_pred             cCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHH
Q 029144          130 ADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVK  167 (198)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  167 (198)
                        .........+++..+....+.    .+++++||++|.|++
T Consensus       155 --~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         155 --SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             --cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence              000000112233333444433    369999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.77  E-value=1.1e-17  Score=119.92  Aligned_cols=171  Identities=12%  Similarity=0.117  Sum_probs=101.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-cee-EEEEEC-CeEEEEEEEeCCCccCcccc-----cccccCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFS-ANVVVD-GSTVNLGLWDTAGQEDYNRL-----RPLSYRG   77 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~-~~~~~~-~~~~~l~i~D~~G~~~~~~~-----~~~~~~~   77 (198)
                      +++|+++|.+|+|||||+|.+.+.........+.+. ... ....+. .....+.+||+||.......     ....+.+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            479999999999999999999986543322222210 000 000111 11235789999997543221     2233667


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCC-CccccHHHHHHHHH----H--c
Q 029144           78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPG-AVPITTAQGEELRK----L--I  150 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~~----~--~  150 (198)
                      +|+++++.+.    .+......|+..+...  +.|+++|+||+|+............ ......++.++.+.    .  .
T Consensus        81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~  154 (197)
T cd04104          81 YDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV  154 (197)
T ss_pred             cCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            8988887542    2333335667777776  7899999999999543210000000 01111122222222    2  2


Q ss_pred             CCCEEEEeccC--CCCCHHHHHHHHHHHHcCCCc
Q 029144          151 GAPVYIECSSK--TQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       151 ~~~~~~~~Sa~--~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      ..+++|.+|+.  .+.++..+.+.++..+...+.
T Consensus       155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~  188 (197)
T cd04104         155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR  188 (197)
T ss_pred             CCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence            34578999999  579999999999998876443

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK12736 elongation factor Tu; Reviewed

Probab=99.77  E-value=1.2e-17  Score=131.29  Aligned_cols=165  Identities=19%  Similarity=0.185  Sum_probs=106.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCC-----------CCCCcc---ccce-eEEEEECCeEEEEEEEeCCCccCcc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-----------DYVPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDYN   68 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~-----------~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~   68 (198)
                      ...++|+++|+.++|||||+++|+......           ...+..   +... .....+......+.++|+||+++|.
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence            467899999999999999999998531100           000000   0011 1112233334567799999999887


Q ss_pred             cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144           69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR  147 (198)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (198)
                      ......+..+|++++|+|++.+..-..  .+++..+...  ++| +++++||+|+.+...       ......++...+.
T Consensus        90 ~~~~~~~~~~d~~llVvd~~~g~~~~t--~~~~~~~~~~--g~~~~IvviNK~D~~~~~~-------~~~~i~~~i~~~l  158 (394)
T PRK12736         90 KNMITGAAQMDGAILVVAATDGPMPQT--REHILLARQV--GVPYLVVFLNKVDLVDDEE-------LLELVEMEVRELL  158 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCEEEEEEEecCCcchHH-------HHHHHHHHHHHHH
Confidence            766667788999999999987543332  2444445544  788 678899999974321       0001223555555


Q ss_pred             HHcCC----CEEEEeccCCCC--------CHHHHHHHHHHHHcC
Q 029144          148 KLIGA----PVYIECSSKTQQ--------NVKAVFDAAIKVVLQ  179 (198)
Q Consensus       148 ~~~~~----~~~~~~Sa~~~~--------~i~~~~~~i~~~~~~  179 (198)
                      ...++    .+++++||++|.        ++.++++.+.+.+..
T Consensus       159 ~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~  202 (394)
T PRK12736        159 SEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT  202 (394)
T ss_pred             HHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence            55553    379999999983        678888888877653

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.76  E-value=1.5e-17  Score=130.79  Aligned_cols=149  Identities=20%  Similarity=0.185  Sum_probs=95.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCC-----------CCC------CCCccccceeEEEEECCeEEEEEEEeCCCcc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF-----------PTD------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~-----------~~~------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (198)
                      +.+.++|+++|+.++|||||+++|+....           .-.      ....+.+  .....+......+.+||+||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchH
Confidence            34678999999999999999999974200           000      0111111  1222333344667899999999


Q ss_pred             CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeecCCcccccccccCCCCCccccHHHHH
Q 029144           66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFLADHPGAVPITTAQGE  144 (198)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  144 (198)
                      .|.......+..+|++++|+|+..+.....  .+.+..+...  ++|.+ +++||+|+.+...       ......+++.
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~qt--~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~~~~~i~  155 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVR  155 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEecccCCHHH-------HHHHHHHHHH
Confidence            887666666778999999999987543332  2334444444  67765 6899999975321       0001234566


Q ss_pred             HHHHHcCC----CEEEEeccCCCC
Q 029144          145 ELRKLIGA----PVYIECSSKTQQ  164 (198)
Q Consensus       145 ~~~~~~~~----~~~~~~Sa~~~~  164 (198)
                      .+...++.    .+++++||.++.
T Consensus       156 ~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       156 ELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHhcCCCccCccEEECcccccc
Confidence            66666653    479999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.76  E-value=2e-17  Score=119.94  Aligned_cols=112  Identities=15%  Similarity=0.143  Sum_probs=78.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC--CCCCCCCc---------c---ccce---eEEEEEC--------CeEEEEEEEeCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT--FPTDYVPT---------V---FDNF---SANVVVD--------GSTVNLGLWDTA   62 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t---------~---~~~~---~~~~~~~--------~~~~~l~i~D~~   62 (198)
                      +|+++|+.++|||||+.+|+...  +......+         .   +..+   .....+.        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            68999999999999999998542  11110000         0   0000   1112222        346889999999


Q ss_pred             CccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144           63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (198)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  123 (198)
                      |+..|.......++.+|++++|+|+.++...+..  ..+......  ++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~~--~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALKE--RVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCcc
Confidence            9999999888999999999999999987666543  333333333  68999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK12735 elongation factor Tu; Reviewed

Probab=99.75  E-value=3e-17  Score=129.15  Aligned_cols=164  Identities=20%  Similarity=0.183  Sum_probs=105.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCC-------C----CCCCCCcc---ccce-eEEEEECCeEEEEEEEeCCCccCcc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNT-------F----PTDYVPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDYN   68 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~-------~----~~~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~   68 (198)
                      ...++|+++|+.++|||||+++|+...       +    ..+..+..   +... .....+......+.|+||||+..|.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence            457899999999999999999998621       0    00000000   0001 1112232333567799999998887


Q ss_pred             cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144           69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFLADHPGAVPITTAQGEELR  147 (198)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (198)
                      ......+..+|++++|+|+..+.....  .+++..+...  ++|.+ +++||+|+.+...       ......+++..+.
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~-------~~~~~~~ei~~~l  158 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRELL  158 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEecCCcchHH-------HHHHHHHHHHHHH
Confidence            666677889999999999987543332  2444445444  68866 5799999964321       1112233556666


Q ss_pred             HHcCC----CEEEEeccCCCC----------CHHHHHHHHHHHHc
Q 029144          148 KLIGA----PVYIECSSKTQQ----------NVKAVFDAAIKVVL  178 (198)
Q Consensus       148 ~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~~  178 (198)
                      ..+++    .+++++||.++.          ++.++++.|.+.+.
T Consensus       159 ~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        159 SKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            66543    368999999984          67888888887654

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=3.9e-17  Score=128.11  Aligned_cols=159  Identities=16%  Similarity=0.223  Sum_probs=114.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      .++.=|+++|+..-|||||+..+................+. ..+..+ ...-.+.|.|||||+.|..++.+...-+|++
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa   82 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA   82 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence            45667999999999999999999988776554444444443 223332 1234677999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-------c-CCC
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-------I-GAP  153 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~  153 (198)
                      ++|+++++.---+..  +-++..+..  +.|+++++||+|.++.+             .+....-.++       + +-.
T Consensus        83 ILVVa~dDGv~pQTi--EAI~hak~a--~vP~iVAiNKiDk~~~n-------------p~~v~~el~~~gl~~E~~gg~v  145 (509)
T COG0532          83 ILVVAADDGVMPQTI--EAINHAKAA--GVPIVVAINKIDKPEAN-------------PDKVKQELQEYGLVPEEWGGDV  145 (509)
T ss_pred             EEEEEccCCcchhHH--HHHHHHHHC--CCCEEEEEecccCCCCC-------------HHHHHHHHHHcCCCHhhcCCce
Confidence            999999986444433  223444444  99999999999998643             2222222222       2 223


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      .++++||++|+|+++++..+.-....
T Consensus       146 ~~VpvSA~tg~Gi~eLL~~ill~aev  171 (509)
T COG0532         146 IFVPVSAKTGEGIDELLELILLLAEV  171 (509)
T ss_pred             EEEEeeccCCCCHHHHHHHHHHHHHH
Confidence            58899999999999999988765543

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.75  E-value=7.1e-17  Score=118.90  Aligned_cols=156  Identities=18%  Similarity=0.261  Sum_probs=112.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccc-------cccCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LSYRG   77 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~~~~   77 (198)
                      ...|-+||.|++|||||++.+...+. ...|..|+.......+.+++-. .+.+-|+||.-.-.++.+       ..++.
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER  274 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER  274 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence            34688999999999999999987643 4567777744433344454422 277999999654433332       23456


Q ss_pred             CcEEEEEEECCCh---hhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144           78 ADVFLLAFSLISK---ASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        78 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      +...+||+|++.+   .-++.+ ..+..++..+-   .+.|.++|+||+|+++.+             .+.+.+++....
T Consensus       275 ~~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~lq  340 (366)
T KOG1489|consen  275 CKGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRLQ  340 (366)
T ss_pred             hceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHcC
Confidence            8999999999988   556665 55555555443   589999999999997532             123567777777


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      .+.++++||++++++.++++.+-+.
T Consensus       341 ~~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  341 NPHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             CCcEEEeeeccccchHHHHHHHhhc
Confidence            6569999999999999999887653

>CHL00071 tufA elongation factor Tu

Probab=99.74  E-value=4.4e-17  Score=128.68  Aligned_cols=152  Identities=19%  Similarity=0.150  Sum_probs=97.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCC--CC---------CCCcc---ccce-eEEEEECCeEEEEEEEeCCCccCc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP--TD---------YVPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDY   67 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~--~~---------~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~   67 (198)
                      +...++|+++|++++|||||+++++...-.  ..         ..+..   +... .....+......+.+.|+||+..|
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            456799999999999999999999864110  00         00000   0000 011122223356679999999888


Q ss_pred             ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144           68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL  146 (198)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (198)
                      .......+..+|++++|+|+..+..-+.  .+.+..+...  ++| +++++||+|+.+...       ......+++..+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~-------~~~~~~~~l~~~  157 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQV--GVPNIVVFLNKEDQVDDEE-------LLELVELEVREL  157 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEccCCCCHHH-------HHHHHHHHHHHH
Confidence            7766677889999999999987543332  3444455544  688 778999999975321       001122355555


Q ss_pred             HHHcCC----CEEEEeccCCCCC
Q 029144          147 RKLIGA----PVYIECSSKTQQN  165 (198)
Q Consensus       147 ~~~~~~----~~~~~~Sa~~~~~  165 (198)
                      ....++    .+++.+||.+|.+
T Consensus       158 l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        158 LSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHhCCCCCcceEEEcchhhccc
Confidence            555543    4789999998863

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.74  E-value=5e-17  Score=130.84  Aligned_cols=156  Identities=16%  Similarity=0.201  Sum_probs=119.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC-CCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc------cccccc--C
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN-TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY--R   76 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~--~   76 (198)
                      ..+|+++|.||+|||||+|++.+. ....++...+.+.........+..  +++.|+||.-....      ..+.++  .
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~   80 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG   80 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence            456999999999999999999975 446788888888888888888865  55999999644331      122333  3


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      .+|+++-|+|++|-+-.-    .+.-++.+.  +.|++++.|++|..+.+.           ..-+..++.+..|. |++
T Consensus        81 ~~D~ivnVvDAtnLeRnL----yltlQLlE~--g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PVv  142 (653)
T COG0370          81 KPDLIVNVVDATNLERNL----YLTLQLLEL--GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PVV  142 (653)
T ss_pred             CCCEEEEEcccchHHHHH----HHHHHHHHc--CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CEE
Confidence            579999999999854322    222344444  899999999999987653           33456777888998 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ++||++|.|++++..++.+......
T Consensus       143 ~tvA~~g~G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         143 PTVAKRGEGLEELKRAIIELAESKT  167 (653)
T ss_pred             EEEeecCCCHHHHHHHHHHhccccc
Confidence            9999999999999999998765554

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.73  E-value=4.4e-17  Score=121.68  Aligned_cols=140  Identities=15%  Similarity=0.122  Sum_probs=89.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC--CCCC-----------CCCC------ccccceeEEEEECCeEEEEEEEeCCCccCcc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN--TFPT-----------DYVP------TVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~--~~~~-----------~~~~------t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (198)
                      +|+++|++++|||||+++++..  ....           ++.+      .+.......+.+++  ..+.+|||||+..|.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence            5899999999999999999742  1110           0000      01111112233444  667799999998888


Q ss_pred             cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH
Q 029144           69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK  148 (198)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (198)
                      ..+...++.+|++++|+|+.+...-..  ..+...+...  ++|+++++||+|+.+...         ....++++....
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~~--~~p~ivviNK~D~~~a~~---------~~~~~~l~~~l~  145 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADRY--NVPRIAFVNKMDRTGADF---------FRVVEQIREKLG  145 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHHc--CCCEEEEEECCCCCCCCH---------HHHHHHHHHHhC
Confidence            888889999999999999987654332  2444445544  799999999999975321         012333444433


Q ss_pred             HcCCCEEEEeccCC
Q 029144          149 LIGAPVYIECSSKT  162 (198)
Q Consensus       149 ~~~~~~~~~~Sa~~  162 (198)
                      ....+..+++|+..
T Consensus       146 ~~~~~~~~Pisa~~  159 (270)
T cd01886         146 ANPVPLQLPIGEED  159 (270)
T ss_pred             CCceEEEeccccCC
Confidence            33443456677763

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.73  E-value=1.7e-16  Score=119.02  Aligned_cols=112  Identities=24%  Similarity=0.201  Sum_probs=76.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCC-----CCcc-c-------------cceeEEEEECCeEEEEEEEeCCCccCcc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDY-----VPTV-F-------------DNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~-----~~t~-~-------------~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (198)
                      +|+++|++|+|||||+++++...-....     ..++ .             ......+.+++  +.+++|||||+..|.
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~   78 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV   78 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence            5899999999999999999753211000     0010 0             00011223344  667899999998887


Q ss_pred             cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      ..+...++.+|++++|+|+++.......  .....+...  ++|.++++||+|+...
T Consensus        79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~--~~~~~~~~~--~~p~iivvNK~D~~~~  131 (268)
T cd04170          79 GETRAALRAADAALVVVSAQSGVEVGTE--KLWEFADEA--GIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCccCCC
Confidence            7778888999999999999887655433  223344444  7999999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=1.8e-16  Score=110.43  Aligned_cols=160  Identities=18%  Similarity=0.143  Sum_probs=107.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCc----------cCccccc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ----------EDYNRLR   71 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~   71 (198)
                      ++...-|+++|.+|+|||||+|++++..-......|.+... ...+.+++.   +.+.|.||-          +.+..+.
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i   97 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI   97 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence            44566899999999999999999999764333444554333 333445543   569999992          2333344


Q ss_pred             ccccCC---CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCcccc--HHHHH-H
Q 029144           72 PLSYRG---ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPIT--TAQGE-E  145 (198)
Q Consensus        72 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~-~  145 (198)
                      ..+++.   ..++++++|+..+..-.+.  +.++.+...  ++|+++++||+|..+...          ..  ..... .
T Consensus        98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~----------~~k~l~~v~~~  163 (200)
T COG0218          98 EEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSE----------RNKQLNKVAEE  163 (200)
T ss_pred             HHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhH----------HHHHHHHHHHH
Confidence            445543   4588899999877665544  667777777  999999999999976432          11  11111 2


Q ss_pred             HHHHcCCCE-EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          146 LRKLIGAPV-YIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       146 ~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +........ ++..|+.++.|++++...|.+.+..
T Consensus       164 l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         164 LKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             hcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            222222211 6678999999999999999887643

>cd04169 RF3 RF3 subfamily

Probab=99.72  E-value=1.1e-16  Score=119.53  Aligned_cols=115  Identities=18%  Similarity=0.173  Sum_probs=77.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC--CCCCC--------CCCccccc-----------eeEEEEECCeEEEEEEEeCCCcc
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN--TFPTD--------YVPTVFDN-----------FSANVVVDGSTVNLGLWDTAGQE   65 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~--~~~~~--------~~~t~~~~-----------~~~~~~~~~~~~~l~i~D~~G~~   65 (198)
                      -+|+++|++|+|||||+++++..  .+...        ...+..+.           ......+....+.+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            37999999999999999999852  11110        00011110           01122233445778899999999


Q ss_pred             CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      +|.......++.+|++++|+|++++.....  ..+.......  ++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~~--~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRLR--GIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHhc--CCCEEEEEECCccCCC
Confidence            888766677899999999999987643322  3344444443  7999999999998654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.70  E-value=2.6e-15  Score=111.19  Aligned_cols=152  Identities=19%  Similarity=0.207  Sum_probs=110.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc-------cccccccCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-------RLRPLSYRG   77 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~   77 (198)
                      -..++++|.|++|||||++.+.+-.. ...|..|+...++..+.+++  ..+|+.|+||.-.-.       ...-...++
T Consensus        63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            45899999999999999999997643 56788899888999999998  667799999843221       223346789


Q ss_pred             CcEEEEEEECCChhh-HHHHHHHHHHHHh---------------------------------------------------
Q 029144           78 ADVFLLAFSLISKAS-YENVAKKWIPELR---------------------------------------------------  105 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s-~~~~~~~~~~~~~---------------------------------------------------  105 (198)
                      ||++++|+|+....+ .+-+..++ ....                                                   
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~EL-e~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~  219 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIEREL-EDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL  219 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHH-HhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence            999999999986554 22221111 1110                                                   


Q ss_pred             ---------------hhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHH
Q 029144          106 ---------------HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF  170 (198)
Q Consensus       106 ---------------~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  170 (198)
                                     ...--+|.+.|.||.|+..               .++...+.+..   .++.+||..+.|++++.
T Consensus       220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~---------------~e~~~~l~~~~---~~v~isa~~~~nld~L~  281 (365)
T COG1163         220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG---------------LEELERLARKP---NSVPISAKKGINLDELK  281 (365)
T ss_pred             EecCCcHHHHHHHHhhcceeeeeEEEEecccccC---------------HHHHHHHHhcc---ceEEEecccCCCHHHHH
Confidence                           0001259999999999954               34555555555   46889999999999999


Q ss_pred             HHHHHHHc
Q 029144          171 DAAIKVVL  178 (198)
Q Consensus       171 ~~i~~~~~  178 (198)
                      +.|.+.+-
T Consensus       282 e~i~~~L~  289 (365)
T COG1163         282 ERIWDVLG  289 (365)
T ss_pred             HHHHHhhC
Confidence            99999873

>PRK00049 elongation factor Tu; Reviewed

Probab=99.70  E-value=4.9e-16  Score=122.23  Aligned_cols=162  Identities=19%  Similarity=0.177  Sum_probs=103.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCC---C---C-----------CCCccccceeEEEEECCeEEEEEEEeCCCccC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP---T---D-----------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED   66 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~---~---~-----------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~   66 (198)
                      ...++|+++|+.++|||||+++|+.....   .   .           ....+.+  .....+......+.+.||||+.+
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHHH
Confidence            46789999999999999999999863110   0   0           0011111  11122323335677999999988


Q ss_pred             cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeecCCcccccccccCCCCCccccHHHHHH
Q 029144           67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFLADHPGAVPITTAQGEE  145 (198)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (198)
                      |.......+..+|++++|+|+..+..-..  .+++..+...  +.|.+ +++||+|+.+...       ......++...
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~-------~~~~~~~~i~~  156 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEE-------LLELVEMEVRE  156 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHH-------HHHHHHHHHHH
Confidence            87766677889999999999987543332  3444555555  78976 5899999974321       00012234444


Q ss_pred             HHHHcCC----CEEEEeccCCCC----------CHHHHHHHHHHHHc
Q 029144          146 LRKLIGA----PVYIECSSKTQQ----------NVKAVFDAAIKVVL  178 (198)
Q Consensus       146 ~~~~~~~----~~~~~~Sa~~~~----------~i~~~~~~i~~~~~  178 (198)
                      +....++    .+++.+||.++.          ++.++++.|.+.+.
T Consensus       157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            5444432    368999999875          56777777777543

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.70  E-value=4.3e-16  Score=125.89  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=78.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh--CCCCCC---------------CCCcc---ccce-eEEEEECCeEEEEEEEeCCC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS--NTFPTD---------------YVPTV---FDNF-SANVVVDGSTVNLGLWDTAG   63 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~--~~~~~~---------------~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G   63 (198)
                      +.-+|+++|+.++|||||+++++.  +.+...               +.+..   +..+ .....+....+.+++|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            456999999999999999999974  211100               00000   0111 11122223347788999999


Q ss_pred             ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144           64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (198)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  124 (198)
                      +..|.......++.+|++|+|+|+++..... . ..+.......  ++|+++++||+|+..
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t-~~l~~~~~~~--~iPiiv~iNK~D~~~  145 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-T-RKLMEVCRLR--DTPIFTFINKLDRDG  145 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCHH-H-HHHHHHHHhc--CCCEEEEEECCcccc
Confidence            9999877777889999999999998764332 2 3444444444  899999999999875

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.70  E-value=1.1e-16  Score=126.21  Aligned_cols=153  Identities=18%  Similarity=0.124  Sum_probs=92.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC--CCCCC----------CCcc-------------cc------ce-eEEEEECCeEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPTV-------------FD------NF-SANVVVDGSTV   54 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~--~~~~~----------~~t~-------------~~------~~-~~~~~~~~~~~   54 (198)
                      ++|+++|+.++|||||+.+++...  +....          ..+.             .+      .. ...........
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            589999999999999999987431  11100          0000             00      00 00111222335


Q ss_pred             EEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCC
Q 029144           55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPG  134 (198)
Q Consensus        55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~  134 (198)
                      .+.|+|+||++.|.......+..+|++++|+|+..+..-+..  +....+... ...++++++||+|+.+...      .
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~--~~~~~~~~~-~~~~iivviNK~D~~~~~~------~  151 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR--RHSYIASLL-GIRHVVLAVNKMDLVDYDE------E  151 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH--HHHHHHHHc-CCCcEEEEEEecccccchH------H
Confidence            678999999998876666678899999999999866433322  222222222 1346889999999964221      0


Q ss_pred             CccccHHHHHHHHHHcCC--CEEEEeccCCCCCHHH
Q 029144          135 AVPITTAQGEELRKLIGA--PVYIECSSKTQQNVKA  168 (198)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  168 (198)
                      ......++...+....+.  .+++++||++|+|+++
T Consensus       152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            000112233334444443  2699999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.70  E-value=4.1e-16  Score=124.95  Aligned_cols=158  Identities=14%  Similarity=0.079  Sum_probs=93.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCC--CCCCC----------CCcc-------------------ccceeE-EEEEC
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY----------VPTV-------------------FDNFSA-NVVVD   50 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~----------~~t~-------------------~~~~~~-~~~~~   50 (198)
                      ....++|+++|+.++|||||+.+++...  +....          ..++                   +..+.. .....
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            3467999999999999999999987542  11100          0100                   000111 11122


Q ss_pred             CeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc
Q 029144           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA  130 (198)
Q Consensus        51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~  130 (198)
                      .....+.|+||||++.|.......+..+|++++|+|+..+..-...  +....+... ...|+++++||+|+.+...   
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~--~~~~l~~~l-g~~~iIvvvNKiD~~~~~~---  177 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR--RHSFIATLL-GIKHLVVAVNKMDLVDYSE---  177 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch--HHHHHHHHh-CCCceEEEEEeeccccchh---
Confidence            2335677999999988876555567899999999999865432221  111122222 1357899999999964221   


Q ss_pred             CCCCCccccHHHHHHHHHHcC---CCEEEEeccCCCCCHHHH
Q 029144          131 DHPGAVPITTAQGEELRKLIG---APVYIECSSKTQQNVKAV  169 (198)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~  169 (198)
                         .......++...+....+   ..+++++||++|.|+.++
T Consensus       178 ---~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        178 ---EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             ---HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence               000011122333333333   247999999999999764

>PRK13351 elongation factor G; Reviewed

Probab=99.69  E-value=3.2e-16  Score=131.30  Aligned_cols=117  Identities=20%  Similarity=0.244  Sum_probs=82.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCC--CC-----------CCCCCcc---ccce---eEEEEECCeEEEEEEEeCCC
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FP-----------TDYVPTV---FDNF---SANVVVDGSTVNLGLWDTAG   63 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~--~~-----------~~~~~t~---~~~~---~~~~~~~~~~~~l~i~D~~G   63 (198)
                      .++..+|+++|+.++|||||+++++...  ..           .++.+..   +..+   ...+.+++  ..+++|||||
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG   82 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPG   82 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCC
Confidence            3456799999999999999999998532  10           0000000   0001   11233343  6788999999


Q ss_pred             ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      +.+|...+..+++.+|++++|+|++++...... ..| ..+...  ++|+++++||+|+...
T Consensus        83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~~--~~p~iiviNK~D~~~~  140 (687)
T PRK13351         83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADRY--GIPRLIFINKMDRVGA  140 (687)
T ss_pred             cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHhc--CCCEEEEEECCCCCCC
Confidence            999988888899999999999999987766544 333 344444  7999999999998854

>PLN03127 Elongation factor Tu; Provisional

Probab=99.69  E-value=1.3e-15  Score=121.13  Aligned_cols=162  Identities=20%  Similarity=0.193  Sum_probs=100.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC------CCCC-----C------CCCccccceeEEEEECCeEEEEEEEeCCCccC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN------TFPT-----D------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQED   66 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~------~~~~-----~------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~   66 (198)
                      ...++|+++|+.++|||||+++|...      ....     +      ....+.+.  ....+.....++.+.||||+..
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCccc
Confidence            45789999999999999999998621      1000     0      01111111  1122333345678999999988


Q ss_pred             cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHH
Q 029144           67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEE  145 (198)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (198)
                      |.......+..+|++++|+|+..+..-+.  .+.+..+...  ++| +++++||+|+.+...       ......++..+
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~-------~~~~i~~~i~~  205 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEE-------LLELVEMELRE  205 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHH-------HHHHHHHHHHH
Confidence            87666566678999999999987643332  3444555555  788 478899999975321       00011123334


Q ss_pred             HHHHcCC----CEEEEeccC---CCCC-------HHHHHHHHHHHHc
Q 029144          146 LRKLIGA----PVYIECSSK---TQQN-------VKAVFDAAIKVVL  178 (198)
Q Consensus       146 ~~~~~~~----~~~~~~Sa~---~~~~-------i~~~~~~i~~~~~  178 (198)
                      +....++    .+++.+|+.   ++.|       +.++++.+.+.+.
T Consensus       206 ~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        206 LLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            4433322    368888876   4555       7788888877654

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.68  E-value=4.5e-16  Score=123.76  Aligned_cols=159  Identities=14%  Similarity=0.081  Sum_probs=100.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCC--CCC------------------------CCCCccc---cce-eEEEEECCe
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT------------------------DYVPTVF---DNF-SANVVVDGS   52 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~--~~~------------------------~~~~t~~---~~~-~~~~~~~~~   52 (198)
                      +...++|+++|+.++|||||+.+++...  +..                        +..+...   ..+ .........
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            3457899999999999999998887421  110                        0001000   000 011112334


Q ss_pred             EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhh---H---HHHHHHHHHHHhhhCCCCC-EEEEeecCCcccc
Q 029144           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---Y---ENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD  125 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~  125 (198)
                      ...+.++|+|||++|.......+..+|++|+|+|+++...   +   ... .+.+..+...  ++| +++++||+|+.+.
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT-~eh~~~~~~~--gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQT-REHALLAFTL--GVKQMICCCNKMDATTP  160 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchH-HHHHHHHHHc--CCCcEEEEEEcccCCch
Confidence            5678899999999999888888999999999999987421   0   122 2333333333  674 6888999998621


Q ss_pred             cccccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHH
Q 029144          126 KQFLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKA  168 (198)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  168 (198)
                      ..    .........++++.+....++    .+|+++||.+|+|+.+
T Consensus       161 ~~----~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KY----SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hh----hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            10    000001234566677776663    3699999999999853

>PLN03126 Elongation factor Tu; Provisional

Probab=99.68  E-value=9.2e-16  Score=122.57  Aligned_cols=150  Identities=21%  Similarity=0.188  Sum_probs=95.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCC------CCCCC-----CCcc---ccce-eEEEEECCeEEEEEEEeCCCccCcc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNT------FPTDY-----VPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDYN   68 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~------~~~~~-----~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~   68 (198)
                      ...++|+++|+.++|||||+++|+...      ..+.+     .+..   +..+ .....+......+.++|+||++.|.
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~  158 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV  158 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence            457899999999999999999998521      11100     0001   0001 0111122233567799999999988


Q ss_pred             cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144           69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR  147 (198)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (198)
                      ......+..+|++++|+|+.++...+.  .+++..+...  ++| +++++||+|+.+...       ......+++..+.
T Consensus       159 ~~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~-------~~~~i~~~i~~~l  227 (478)
T PLN03126        159 KNMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEE-------LLELVELEVRELL  227 (478)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHH-------HHHHHHHHHHHHH
Confidence            777777788999999999987654433  3444455555  788 778999999975321       0011223455555


Q ss_pred             HHcC----CCEEEEeccCCCC
Q 029144          148 KLIG----APVYIECSSKTQQ  164 (198)
Q Consensus       148 ~~~~----~~~~~~~Sa~~~~  164 (198)
                      ...+    ..+++.+|+.++.
T Consensus       228 ~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        228 SSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HhcCCCcCcceEEEEEccccc
Confidence            5542    2368999998875

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.68  E-value=2.2e-16  Score=114.59  Aligned_cols=172  Identities=15%  Similarity=0.109  Sum_probs=112.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCC-C-ccccceeEEEEECCeEEEEEEEeCCCccC-------ccccccc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-P-TVFDNFSANVVVDGSTVNLGLWDTAGQED-------YNRLRPL   73 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~-~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~   73 (198)
                      +..+++|+++|..|+||||++|+++.+...+... + +..........+++  -.+.+||+||-++       ++.....
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d  113 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD  113 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence            4568999999999999999999999765433211 1 11111111222344  4577999999655       4455666


Q ss_pred             ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC-----CCCCccccHHHH---HH
Q 029144           74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD-----HPGAVPITTAQG---EE  145 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~---~~  145 (198)
                      .+...|.++++.++.|+.--.+. ..|.+.+..- -+.++++++|.+|.......+..     .........+.+   .+
T Consensus       114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            77889999999999988755544 4444444433 35899999999999876432221     122222222222   23


Q ss_pred             HHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          146 LRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      +++.  ..|++.+|...+.|++++...+++.+...
T Consensus       192 ~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         192 LFQE--VKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             HHhh--cCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            3333  33677788899999999999999988643

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.68  E-value=4.4e-16  Score=123.86  Aligned_cols=159  Identities=15%  Similarity=0.114  Sum_probs=98.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhC--CCCC------------------------CCCCccccc-ee---EEEEECCe
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTVFDN-FS---ANVVVDGS   52 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~------------------------~~~~t~~~~-~~---~~~~~~~~   52 (198)
                      +...++|+++|+.++|||||+.+++..  .+..                        +..+..... ..   ........
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            446789999999999999999988752  2111                        000111000 00   11112333


Q ss_pred             EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhh---H---HHHHHHHHHHHhhhCCCCC-EEEEeecCCcccc
Q 029144           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---Y---ENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD  125 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~  125 (198)
                      ...+.|+|+||+.+|.......+..+|++++|+|+..+..   +   ... .+.+..+...  ++| +++++||+|....
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT-~eh~~~~~~~--gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQT-REHALLAFTL--GVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccH-HHHHHHHHHc--CCCeEEEEEEccccccc
Confidence            4678899999999998877788899999999999987531   0   122 2333344444  666 6789999995321


Q ss_pred             cccccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHH
Q 029144          126 KQFLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKA  168 (198)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  168 (198)
                      ..    .........+++..+....++    .+++++|+.+|+|+.+
T Consensus       161 ~~----~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NY----SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hh----hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            00    000011233444555554443    4689999999999864

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.67  E-value=9.3e-17  Score=111.80  Aligned_cols=117  Identities=17%  Similarity=0.155  Sum_probs=73.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEE-CCeEEEEEEEeCCCccCccccccc---ccCCCcEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNRLRPL---SYRGADVF   81 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~---~~~~~~~~   81 (198)
                      .-.|+++|+.|+|||+|+.+|..+...+...+. .....  ..+ ......+.++|+|||++.+.....   ++.++.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            346999999999999999999998654443332 22111  111 112234669999999988754333   36789999


Q ss_pred             EEEEECCC-hhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccc
Q 029144           82 LLAFSLIS-KASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDD  125 (198)
Q Consensus        82 i~v~d~~~-~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~  125 (198)
                      |||+|.+. .....+..+.++..+....   ..+|++|++||.|+...
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            99999974 4556666566666555433   58999999999999764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.67  E-value=1.9e-15  Score=118.55  Aligned_cols=166  Identities=23%  Similarity=0.205  Sum_probs=117.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCC--CCC--------------CCCCccccceeEEEE-ECCeEEEEEEEeCCCccC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPT--------------DYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED   66 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~--------------~~~~t~~~~~~~~~~-~~~~~~~l~i~D~~G~~~   66 (198)
                      ++.=++.|+-+-.-|||||..+++...  +..              ....-+.......+. .+++.+.++++|||||-+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            345588999999999999999987531  111              001111001111222 246779999999999999


Q ss_pred             cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144           67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL  146 (198)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (198)
                      |.....+.+.-++++++|+|++.+...+.. ..+...++.   +..+|.|+||+|++..+.         .....+..++
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adp---------e~V~~q~~~l  204 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADP---------ERVENQLFEL  204 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCH---------HHHHHHHHHH
Confidence            999999999999999999999998877776 333334443   688999999999987542         1122233344


Q ss_pred             HHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCCCcc
Q 029144          147 RKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       147 ~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  183 (198)
                      ....+. +++.+||++|.|+.++|..|++.+..+.-.
T Consensus       205 F~~~~~-~~i~vSAK~G~~v~~lL~AII~rVPpP~~~  240 (650)
T KOG0462|consen  205 FDIPPA-EVIYVSAKTGLNVEELLEAIIRRVPPPKGI  240 (650)
T ss_pred             hcCCcc-ceEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence            444444 688999999999999999999998765543

>cd01850 CDC_Septin CDC/Septin

Probab=99.67  E-value=3.3e-15  Score=112.06  Aligned_cols=144  Identities=16%  Similarity=0.118  Sum_probs=89.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCC----------CCCccc-cceeEEEEECCeEEEEEEEeCCCccCcc-----
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD----------YVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYN-----   68 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~----------~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~-----   68 (198)
                      -.++|+++|.+|+|||||++++++..+...          ..+|.. ......+..++..+.+.+|||||...+.     
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            368999999999999999999998866433          222322 2223344556777899999999943221     


Q ss_pred             ---------------------cccccccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           69 ---------------------RLRPLSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        69 ---------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                                           ..+...+.  .+|+++++++.+... +......++..+..   .+|+++|+||+|+...
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~~---~v~vi~VinK~D~l~~  158 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLSK---RVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHhc---cCCEEEEEECCCcCCH
Confidence                                 11112333  367888888876421 21111244444443   6899999999999653


Q ss_pred             cccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144          126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      ..        .........+.+..+++ .+|.....
T Consensus       159 ~e--------~~~~k~~i~~~l~~~~i-~~~~~~~~  185 (276)
T cd01850         159 EE--------LKEFKQRIMEDIEEHNI-KIYKFPED  185 (276)
T ss_pred             HH--------HHHHHHHHHHHHHHcCC-ceECCCCC
Confidence            21        01234456666777777 56665543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.67  E-value=2.6e-15  Score=114.62  Aligned_cols=157  Identities=19%  Similarity=0.176  Sum_probs=108.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccC---------cccccccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLS   74 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~   74 (198)
                      ....|.++|..|+|||||+|++.+... ..+.-.++-+.....+.+.+ ...+.+-||.|--+         |.+.. .-
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL-EE  268 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL-EE  268 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH-HH
Confidence            467899999999999999999986533 34444445555555555553 23455999999322         22221 12


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                      ...+|+++.|+|++++...+.+ ......+.... ...|+++|.||+|+..+.               .......... +
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~---------------~~~~~~~~~~-~  331 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDE---------------EILAELERGS-P  331 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCch---------------hhhhhhhhcC-C
Confidence            3579999999999999766666 55556666543 479999999999986542               1112222221 2


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ..+.+||++|.|++.++..|.+.+...
T Consensus       332 ~~v~iSA~~~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         332 NPVFISAKTGEGLDLLRERIIELLSGL  358 (411)
T ss_pred             CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence            467899999999999999999988643

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.67  E-value=4.7e-15  Score=112.83  Aligned_cols=80  Identities=24%  Similarity=0.227  Sum_probs=53.7

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEE---------------------ECC-eEEEEEEEeCCCc-
Q 029144            9 CVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VDG-STVNLGLWDTAGQ-   64 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~---------------------~~~-~~~~l~i~D~~G~-   64 (198)
                      |+++|.+++|||||++++.+.... .+|..++.+.......                     .++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            579999999999999999987542 2333333222211111                     122 3367999999997 


Q ss_pred             ---cCcccccccc---cCCCcEEEEEEECC
Q 029144           65 ---EDYNRLRPLS---YRGADVFLLAFSLI   88 (198)
Q Consensus        65 ---~~~~~~~~~~---~~~~~~~i~v~d~~   88 (198)
                         +.+..+...+   ++++|++++|+|+.
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               3344443343   78999999999996

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.66  E-value=6.9e-16  Score=128.09  Aligned_cols=156  Identities=19%  Similarity=0.147  Sum_probs=93.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCC--CCCC----------CCCcccccee--------------------EEEEECC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD----------YVPTVFDNFS--------------------ANVVVDG   51 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~----------~~~t~~~~~~--------------------~~~~~~~   51 (198)
                      ...++|+++|++++|||||+++++...  +...          ...++.+.+.                    ....+..
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            457899999999999999999998532  2110          0111100000                    0011112


Q ss_pred             eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC
Q 029144           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD  131 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  131 (198)
                      ....+.|+||||++.|.......+..+|++++|+|+..+..-+..  +....+... ...|+++++||+|+.+...    
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~----  174 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQ----  174 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchh----
Confidence            234567999999988865555667899999999999765432221  222222222 1357889999999964211    


Q ss_pred             CCCCccccHHHHHHHHHHcCC--CEEEEeccCCCCCHHH
Q 029144          132 HPGAVPITTAQGEELRKLIGA--PVYIECSSKTQQNVKA  168 (198)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~  168 (198)
                        ........+...+....++  .+++++||++|.|+.+
T Consensus       175 --~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        175 --EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             --HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence              0000112233344445554  2589999999999874

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.66  E-value=2.5e-15  Score=98.75  Aligned_cols=105  Identities=23%  Similarity=0.268  Sum_probs=71.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc---------cccccccC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPLSYR   76 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~~~~~~   76 (198)
                      +|+++|.+|+|||||++++++...  .....+++.......+.+++..+  .++||||...-.         ......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            699999999999999999997532  33334444444444556677555  599999964321         11222347


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029144           77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK  119 (198)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK  119 (198)
                      .+|++++|+|++++.. +.. ..+++.++   .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence            8999999999887432 222 45555554   48999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.64  E-value=1.1e-14  Score=108.68  Aligned_cols=162  Identities=21%  Similarity=0.197  Sum_probs=107.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc----ccccc---cCCCc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----LRPLS---YRGAD   79 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~~~~~---~~~~~   79 (198)
                      .|-+||.|++|||||++.+..-+. ..+|..|+....-..+.+. ..-.+.+-|+||.-.-.+    +-..|   +..+.
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            577999999999999999986533 4567777755544444442 223466999999533221    22223   34578


Q ss_pred             EEEEEEECCChhh---HHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144           80 VFLLAFSLISKAS---YENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus        80 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                      +++.|+|++..+.   .++. ..+...+..+.   .+.|.+||+||+|+..+.+          ........+....++.
T Consensus       240 vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e----------~~~~~~~~l~~~~~~~  308 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEE----------ELEELKKALAEALGWE  308 (369)
T ss_pred             eeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHH----------HHHHHHHHHHHhcCCC
Confidence            9999999985543   4444 45555666554   5899999999999754432          2222333444444543


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ..+.+||.++.|+++++..+.+.+....
T Consensus       309 ~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         309 VFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             cceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            3333999999999999999998876654

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.64  E-value=3.9e-15  Score=118.31  Aligned_cols=166  Identities=14%  Similarity=0.097  Sum_probs=102.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCC---CCCC-CCcc-ccceeEE-------------E-EECC-------------
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF---PTDY-VPTV-FDNFSAN-------------V-VVDG-------------   51 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~---~~~~-~~t~-~~~~~~~-------------~-~~~~-------------   51 (198)
                      ...++|.++|+-..|||||+.+|.+-..   .++. ...+ .--|...             + ..+.             
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            4568999999999999999999985321   1110 0000 0000000             0 0000             


Q ss_pred             ---eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144           52 ---STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (198)
Q Consensus        52 ---~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  127 (198)
                         ....+.|+|+||++.|.......+..+|++++|+|+..+. ..+.  .+.+..+... .-.|+++|+||+|+.+...
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT--~ehl~i~~~l-gi~~iIVvlNKiDlv~~~~  188 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT--SEHLAAVEIM-KLKHIIILQNKIDLVKEAQ  188 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh--HHHHHHHHHc-CCCcEEEEEecccccCHHH
Confidence               0236789999999999877777788999999999998742 2222  2222333322 2346899999999975321


Q ss_pred             cccCCCCCccccHHHHHHHHHHc--CCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          128 FLADHPGAVPITTAQGEELRKLI--GAPVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                              .....++...+....  ...+++++||++|.|++++++.|.+.+..+
T Consensus       189 --------~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~  235 (460)
T PTZ00327        189 --------AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP  235 (460)
T ss_pred             --------HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence                    001122333333221  233799999999999999999999866544

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.64  E-value=4e-15  Score=110.47  Aligned_cols=160  Identities=20%  Similarity=0.210  Sum_probs=112.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCcc-C-ccccc------cccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-D-YNRLR------PLSY   75 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-~-~~~~~------~~~~   75 (198)
                      ....|+|.|.||||||||++.+..-.. ..+|..|+.......+..++  ..+|++||||.- + ....+      -..+
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            345799999999999999999987654 45677788666666666665  567799999942 1 11111      1122


Q ss_pred             CC-CcEEEEEEECC--ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC
Q 029144           76 RG-ADVFLLAFSLI--SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA  152 (198)
Q Consensus        76 ~~-~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (198)
                      +. .++++|++|.+  ++-+.+.. ..++..+...+. .|+++|.||+|..+..            ..+++......-+.
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~~~~~~~~~~~~~~  310 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEE------------KLEEIEASVLEEGG  310 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchh------------HHHHHHHHHHhhcc
Confidence            22 67899999986  45567777 677777777765 9999999999997542            33444444455555


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          153 PVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      .....+++..+.+++..-..+...+.+.
T Consensus       311 ~~~~~~~~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         311 EEPLKISATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             ccccceeeeehhhHHHHHHHHHHHhhch
Confidence            4467789999999998888887775544

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.64  E-value=4.8e-15  Score=124.14  Aligned_cols=115  Identities=17%  Similarity=0.124  Sum_probs=81.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC--CCCC---CC--------------CCccccceeEEEEECCeEEEEEEEeCCCcc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT---DY--------------VPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~---~~--------------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (198)
                      +.-+|+++|+.++|||||+++++..  ....   ..              ..++.......+.+++  ..+.+|||||+.
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~   86 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHV   86 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCc
Confidence            4559999999999999999999742  1100   00              0111111223334444  677899999999


Q ss_pred             CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      .|...+...++.+|++++|+|+.++......  .+...+...  +.|+++++||+|+...
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~~--~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANRY--EVPRIAFVNKMDKTGA  142 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            8888788889999999999999887655443  333444444  7999999999999753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=1.7e-14  Score=113.25  Aligned_cols=155  Identities=18%  Similarity=0.242  Sum_probs=111.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      +++--|-++|+..-|||||+..|....+.......+...+ ...+.. ++  -.++|.|||||..|..++.+...-.|++
T Consensus       151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIv  228 (683)
T KOG1145|consen  151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDIV  228 (683)
T ss_pred             CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC--CEEEEecCCcHHHHHHHHhccCccccEE
Confidence            4677799999999999999999998766554444443333 222333 44  4567999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-HHHH------Hc-CCC
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-ELRK------LI-GAP  153 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~-~~~  153 (198)
                      ++|+.+.|+---+..  +-+...+.  .+.|+|+++||+|.+...             .+... ++..      ++ |-.
T Consensus       229 VLVVAadDGVmpQT~--EaIkhAk~--A~VpiVvAinKiDkp~a~-------------pekv~~eL~~~gi~~E~~GGdV  291 (683)
T KOG1145|consen  229 VLVVAADDGVMPQTL--EAIKHAKS--ANVPIVVAINKIDKPGAN-------------PEKVKRELLSQGIVVEDLGGDV  291 (683)
T ss_pred             EEEEEccCCccHhHH--HHHHHHHh--cCCCEEEEEeccCCCCCC-------------HHHHHHHHHHcCccHHHcCCce
Confidence            999999886433332  22222333  389999999999987642             22222 2222      22 334


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHH
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      +++++||++|.|++.+.+.+.-.+
T Consensus       292 QvipiSAl~g~nl~~L~eaill~A  315 (683)
T KOG1145|consen  292 QVIPISALTGENLDLLEEAILLLA  315 (683)
T ss_pred             eEEEeecccCCChHHHHHHHHHHH
Confidence            689999999999999998887655

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=3.1e-15  Score=116.09  Aligned_cols=167  Identities=22%  Similarity=0.223  Sum_probs=110.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc---------cccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPL   73 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------~~~~   73 (198)
                      ..++|+++|.||+|||||+|.|.+.  .++.+...|+.+.+...+++++  +.+.+.||+|...-..         ....
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence            4689999999999999999999976  4567778899999999999999  5555999999755111         1123


Q ss_pred             ccCCCcEEEEEEECCChhhHHHHH-HHHHHHHhhhC-------CCCCEEEEeecCCcccccccccCCCCCccccHHHHHH
Q 029144           74 SYRGADVFLLAFSLISKASYENVA-KKWIPELRHYA-------PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE  145 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~-------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (198)
                      .+..+|++++|+|+.-.++-++.. .+.+.....-.       ...|+++++||.|+..+-.      .....+......
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~------~~~~~~~~~~~~  418 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIP------EMTKIPVVYPSA  418 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccc------cccCCceecccc
Confidence            456799999999994333222220 22233333221       2479999999999976521      000001001111


Q ss_pred             HHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          146 LRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                       .-...++...++|+++++|++.+.+.+.+.+...
T Consensus       419 -~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  419 -EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             -ccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence             0111223456699999999999999998877543

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=1.3e-15  Score=102.10  Aligned_cols=156  Identities=17%  Similarity=0.235  Sum_probs=111.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.=|++++|..|+|||||++.+..+.... +.||.-. .+..+.+.+  +.++.+|.+|+..-+..|+.++..+|++++.
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHP-TSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l   94 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHP-TSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL   94 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccc-cCCCcCC-ChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence            45689999999999999999998876532 3333311 122344555  6778999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH---HHHc----------
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL---RKLI----------  150 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------  150 (198)
                      +|+-|.+-+.+...++-..+.... .+.|+++.+||+|.+..            .+.++.+..   .+..          
T Consensus        95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a------------~se~~l~~~l~l~~~t~~~~~v~~~~  162 (193)
T KOG0077|consen   95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA------------ASEDELRFHLGLSNFTTGKGKVNLTD  162 (193)
T ss_pred             eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc------------ccHHHHHHHHHHHHHhcccccccccC
Confidence            999999988888555544444332 58999999999999875            233332211   1111          


Q ss_pred             -CC--CEEEEeccCCCCCHHHHHHHHHHH
Q 029144          151 -GA--PVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       151 -~~--~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                       +.  ...|.||...+.+.-+.|.|+.+.
T Consensus       163 ~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  163 SNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             CCCCeEEEEEEEEEccCccceeeeehhhh
Confidence             11  125668888888877777776654

>PRK09866 hypothetical protein; Provisional

Probab=99.62  E-value=1.9e-14  Score=116.10  Aligned_cols=111  Identities=16%  Similarity=0.112  Sum_probs=75.5

Q ss_pred             EEEEEEeCCCccCc-----ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc
Q 029144           54 VNLGLWDTAGQEDY-----NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  128 (198)
Q Consensus        54 ~~l~i~D~~G~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  128 (198)
                      ..+.|.||||...-     .......+..+|+++||+|+....+..+.  .+...+.....+.|+++|+||+|+.+... 
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dree-  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNS-  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCccc-
Confidence            45679999997542     11233468899999999999876554443  45555655422369999999999964221 


Q ss_pred             ccCCCCCccccHHHHHHHHH------HcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          129 LADHPGAVPITTAQGEELRK------LIGAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                               ...+....+..      ......+|++||+.|.|++++++.|.+.
T Consensus       307 ---------ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        307 ---------DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             ---------chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence                     22334444322      1234469999999999999999999883

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.61  E-value=2e-15  Score=96.60  Aligned_cols=138  Identities=23%  Similarity=0.202  Sum_probs=97.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCcc----CcccccccccCCCcEEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~~~~~~~~i~   83 (198)
                      |++++|..|+|||||.+++.++...  |..|..      +++++.    ..+||||.-    .+.+........+|++++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA------ve~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~   70 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA------VEFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY   70 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hcccce------eeccCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence            7999999999999999999876531  111211      122221    167999942    232223344567999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |-+++++++.-..  .+    .... ..|+|-|++|.|++++            ...+..+++..+-|..++|++|+.+.
T Consensus        71 v~~and~~s~f~p--~f----~~~~-~k~vIgvVTK~DLaed------------~dI~~~~~~L~eaGa~~IF~~s~~d~  131 (148)
T COG4917          71 VHAANDPESRFPP--GF----LDIG-VKKVIGVVTKADLAED------------ADISLVKRWLREAGAEPIFETSAVDN  131 (148)
T ss_pred             eecccCccccCCc--cc----cccc-ccceEEEEecccccch------------HhHHHHHHHHHHcCCcceEEEeccCc
Confidence            9999998764433  11    1111 4669999999999864            34566778888889989999999999


Q ss_pred             CCHHHHHHHHHHH
Q 029144          164 QNVKAVFDAAIKV  176 (198)
Q Consensus       164 ~~i~~~~~~i~~~  176 (198)
                      .|++++++.+...
T Consensus       132 ~gv~~l~~~L~~~  144 (148)
T COG4917         132 QGVEELVDYLASL  144 (148)
T ss_pred             ccHHHHHHHHHhh
Confidence            9999999888653

>TIGR00503 prfC peptide chain release factor 3

Probab=99.60  E-value=9.5e-15  Score=118.20  Aligned_cols=117  Identities=16%  Similarity=0.119  Sum_probs=79.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh--CCCCCC--------CCCcc----------ccce-eEEEEECCeEEEEEEEeCC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPTD--------YVPTV----------FDNF-SANVVVDGSTVNLGLWDTA   62 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~--~~~~~~--------~~~t~----------~~~~-~~~~~~~~~~~~l~i~D~~   62 (198)
                      .+..+|+++|++++|||||+++++.  +.+...        ...+.          +..+ .....++...+.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            3567999999999999999999863  222110        00011          1111 1122334445788899999


Q ss_pred             CccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144           63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (198)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  124 (198)
                      |+..|.......++.+|++|+|+|+++..... . ..+...+...  ++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t-~~l~~~~~~~--~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-T-RKLMEVTRLR--DTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-H-HHHHHHHHhc--CCCEEEEEECccccC
Confidence            99888876667789999999999998753222 2 3444444443  799999999999964

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.60  E-value=2.8e-14  Score=110.51  Aligned_cols=163  Identities=20%  Similarity=0.206  Sum_probs=115.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCC--CCC--------------CCCCcc--ccceeEEEEE-CCeEEEEEEEeCCC
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT--FPT--------------DYVPTV--FDNFSANVVV-DGSTVNLGLWDTAG   63 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~--~~~--------------~~~~t~--~~~~~~~~~~-~~~~~~l~i~D~~G   63 (198)
                      .++.=+..++-+-.-|||||..|++...  +.+              ...+-+  ...+.-.+.. ++..+.++++||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            3445578899999999999999988532  111              011111  1111122222 45789999999999


Q ss_pred             ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHH
Q 029144           64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG  143 (198)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  143 (198)
                      |-+|.-...+.+..|.++++|+|++.+-..+.+ ......+..   +.-++-|+||+||+..+             .+..
T Consensus        86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Ad-------------perv  148 (603)
T COG0481          86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAAD-------------PERV  148 (603)
T ss_pred             ccceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCC-------------HHHH
Confidence            999998888899999999999999998777777 344344444   57788889999998753             2222


Q ss_pred             -HHHHHHcCC--CEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          144 -EELRKLIGA--PVYIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       144 -~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                       ++..+-.|.  ...+.+||++|.|++++++.|++.+..+.-
T Consensus       149 k~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g  190 (603)
T COG0481         149 KQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG  190 (603)
T ss_pred             HHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence             233333333  347889999999999999999999877653

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.60  E-value=8.2e-14  Score=99.82  Aligned_cols=163  Identities=19%  Similarity=0.169  Sum_probs=99.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCC---CCccccceeEEEEECCeEEEEEEEeCCCccCccc-----------ccc
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDY---VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-----------LRP   72 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-----------~~~   72 (198)
                      ++|+++|.+|+||||++|.+++.......   .+.+.........+++  ..+.++||||......           ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            47999999999999999999987543222   1222222233334555  4567999999654321           111


Q ss_pred             cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144           73 LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL  149 (198)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (198)
                      ....++|++++|+++.+ .+..+  ...++.+...+.   -.+++++.|+.|.......    ..-........+.+.+.
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~----~~~~~~~~~~l~~l~~~  151 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTL----EDYLENSCEALKRLLEK  151 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcH----HHHHHhccHHHHHHHHH
Confidence            23467899999999877 33222  344555555432   3688999999997653210    00000012445666666


Q ss_pred             cCCCEEEEec-----cCCCCCHHHHHHHHHHHHcC
Q 029144          150 IGAPVYIECS-----SKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       150 ~~~~~~~~~S-----a~~~~~i~~~~~~i~~~~~~  179 (198)
                      .+. .|+..+     +..+.++++++..+-+.+..
T Consensus       152 c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         152 CGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             hCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            554 344433     45678899999998887765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.58  E-value=5.1e-14  Score=104.40  Aligned_cols=172  Identities=15%  Similarity=0.175  Sum_probs=117.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCC----cEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA----DVFL   82 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~----~~~i   82 (198)
                      -+|+|+|..++|||||+.++.+..-...-..-...+....-..++...++.+|-..|......+..+.+...    .++|
T Consensus        53 k~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlvi  132 (473)
T KOG3905|consen   53 KNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLVI  132 (473)
T ss_pred             CeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEEE
Confidence            479999999999999999998765222211111111122222344456788999888766555555555432    3789


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC------------------------------------------------------
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA------------------------------------------------------  108 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~------------------------------------------------------  108 (198)
                      ++.|+++++.+-+..+.|...+..+.                                                      
T Consensus       133 ltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL  212 (473)
T KOG3905|consen  133 LTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPL  212 (473)
T ss_pred             EEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccccc
Confidence            99999999887666688876665330                                                      


Q ss_pred             --------CCCCEEEEeecCCcccccccc-cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          109 --------PGVPIILVGTKLDLRDDKQFL-ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       109 --------~~~p~iiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                              -++|++||.+|||........ ..+++........++.|+..+|. ..|.+|++...|++-++.+|++..+-
T Consensus       213 ~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKYivhr~yG  291 (473)
T KOG3905|consen  213 GQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKYIVHRSYG  291 (473)
T ss_pred             CCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHHHHHHhcC
Confidence                    146999999999995321110 11122223455667889999999 68889999999999999999998754

>PRK12739 elongation factor G; Reviewed

Probab=99.58  E-value=2.6e-14  Score=119.77  Aligned_cols=116  Identities=17%  Similarity=0.130  Sum_probs=81.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC--CCC-----C------------CCCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFP-----T------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~-----~------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (198)
                      ++..+|+++|+.++|||||+++++..  ...     .            .....+.+.....+.+++  ..+.++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCH
Confidence            45679999999999999999999752  110     0            011111111223344455  56779999999


Q ss_pred             cCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      ..|...+...++.+|++++|+|+.++......  ..+..+...  +.|.++++||+|+...
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~~--~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADKY--GVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            88887788888999999999999887544433  444445444  7999999999999753

>cd00066 G-alpha G protein alpha subunit

Probab=99.58  E-value=1.1e-13  Score=105.86  Aligned_cols=127  Identities=17%  Similarity=0.201  Sum_probs=85.3

Q ss_pred             EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhhC-CCCCEEEEeecCC
Q 029144           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----------ASYENVAKKWIPELRHYA-PGVPIILVGTKLD  121 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D  121 (198)
                      .+.+.+||++|+...+..|.+++.+++++++|+|+++.          ..+.+....+...+.... .+.|+++++||.|
T Consensus       160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D  239 (317)
T cd00066         160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD  239 (317)
T ss_pred             ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence            46688999999999999999999999999999999874          234444344444444332 6899999999999


Q ss_pred             cccccccc-------cCCCCCccccHHHHHHHHHH-----c---CC-CEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          122 LRDDKQFL-------ADHPGAVPITTAQGEELRKL-----I---GA-PVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       122 l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----~---~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      +.......       ++..+. .-+.+.+..+...     .   +. ...+.++|.+..+++.+|+.+.+.+...
T Consensus       240 ~f~~ki~~~~l~~~fp~y~g~-~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         240 LFEEKIKKSPLTDYFPDYTGP-PNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             HHHHhhcCCCccccCCCCCCC-CCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence            87643211       111110 1233333333222     1   11 1245689999999999999998877543

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.56  E-value=1.9e-13  Score=108.14  Aligned_cols=165  Identities=24%  Similarity=0.327  Sum_probs=122.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      ++.+.+.+.++|+.++|||.+++.|+++.+...+.++....+ ...+...+....+.+.|.+-. ....+...- ..+|+
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            355789999999999999999999999988876666664444 444455577777888888754 222222222 67999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++++||.+++.++......+......  ...|+++|++|+|+.+..+          ...-...+++++++.++.+..|+
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q----------~~~iqpde~~~~~~i~~P~~~S~  566 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQ----------RYSIQPDEFCRQLGLPPPIHISS  566 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhh----------ccCCChHHHHHhcCCCCCeeecc
Confidence            99999999999998884333222222  5899999999999987653          22222278899999888888898


Q ss_pred             CCCCCHHHHHHHHHHHHcCCC
Q 029144          161 KTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ..... .++|.+|+.++..++
T Consensus       567 ~~~~s-~~lf~kL~~~A~~Ph  586 (625)
T KOG1707|consen  567 KTLSS-NELFIKLATMAQYPH  586 (625)
T ss_pred             CCCCC-chHHHHHHHhhhCCC
Confidence            86334 899999999988877

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.56  E-value=5.7e-14  Score=120.17  Aligned_cols=156  Identities=19%  Similarity=0.210  Sum_probs=94.1

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccccceeE-EEEECC----------------eEEEEEEEeCCCccCcccccccccCCCcE
Q 029144           18 GKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDG----------------STVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus        18 GKttli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~----------------~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      +||||+..+.+..............+.. .+..+.                ....+.||||||++.|..+....+..+|+
T Consensus       473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi  552 (1049)
T PRK14845        473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL  552 (1049)
T ss_pred             ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence            4999999999877655444444333322 111211                00127899999999998887778888999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccc------cHHHH----HHH---H
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPI------TTAQG----EEL---R  147 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~----~~~---~  147 (198)
                      +++|+|++++..-+..  ..+..+...  +.|+++|+||+|+.+.-......+....+      ...+.    ..+   .
T Consensus       553 vlLVVDa~~Gi~~qT~--e~I~~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L  628 (1049)
T PRK14845        553 AVLVVDINEGFKPQTI--EAINILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKL  628 (1049)
T ss_pred             EEEEEECcccCCHhHH--HHHHHHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHH
Confidence            9999999874222221  223344444  78999999999996421100000000000      00010    000   0


Q ss_pred             HH--------------cCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          148 KL--------------IGAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       148 ~~--------------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      .+              .+..+++++||++|+|+++++..+....
T Consensus       629 ~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~  672 (1049)
T PRK14845        629 YELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA  672 (1049)
T ss_pred             HhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence            11              2344789999999999999998876543

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=2.5e-14  Score=109.28  Aligned_cols=160  Identities=16%  Similarity=0.155  Sum_probs=99.3

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhC--CCCC------------------------CCCCccccc---e-eEEEEECC
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTVFDN---F-SANVVVDG   51 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~------------------------~~~~t~~~~---~-~~~~~~~~   51 (198)
                      ++...++++++|+..+|||||+-+|+..  .++.                        +...+..++   + ........
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            4567899999999999999999888743  2221                        000111100   0 01111223


Q ss_pred             eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHH-----HHHHHHHHHhhhCCCCCEEEEeecCCccccc
Q 029144           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN-----VAKKWIPELRHYAPGVPIILVGTKLDLRDDK  126 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  126 (198)
                      ..+.++|.|+||+..|-........+||++|+|+|+.+.+.-..     ...+ ...+.....-..++|++||+|+.+-+
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlGi~~lIVavNKMD~v~wd  161 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLGIKQLIVAVNKMDLVSWD  161 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcCCceEEEEEEcccccccC
Confidence            34678999999999998888888999999999999988742211     1011 11222222345678889999998632


Q ss_pred             ccccCCCCCccccHHHHHHHHHHcCCC----EEEEeccCCCCCHHH
Q 029144          127 QFLADHPGAVPITTAQGEELRKLIGAP----VYIECSSKTQQNVKA  168 (198)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa~~~~~i~~  168 (198)
                      +      ........+...+....|+.    +|+++|+..|.|+.+
T Consensus       162 e------~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         162 E------ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             H------HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            1      11112223333455554443    599999999998754

>PRK00007 elongation factor G; Reviewed

Probab=99.56  E-value=5.9e-14  Score=117.60  Aligned_cols=116  Identities=16%  Similarity=0.111  Sum_probs=81.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh--CCCCC-----------------CCCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~--~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (198)
                      ++..+|+++|++++|||||+++++.  +....                 ....++.+.....+.+++  ..+.+.||||+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~   85 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGH   85 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCc
Confidence            3456999999999999999999974  21110                 011111122223344455  56779999999


Q ss_pred             cCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      ..|.......++.+|++++|+|+..+...++.  .....+...  ++|.++++||+|+.+.
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTGA  142 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            88776666778889999999999877555443  344455555  7899999999999753

>PRK12740 elongation factor G; Reviewed

Probab=99.55  E-value=1.3e-13  Score=115.56  Aligned_cols=108  Identities=21%  Similarity=0.251  Sum_probs=74.0

Q ss_pred             ECCCCCCHHHHHHHHhhCC--CCC--CCC--Cccccc-------------eeEEEEECCeEEEEEEEeCCCccCcccccc
Q 029144           12 VGDGAVGKTCMLISYTSNT--FPT--DYV--PTVFDN-------------FSANVVVDGSTVNLGLWDTAGQEDYNRLRP   72 (198)
Q Consensus        12 vG~~~~GKttli~~~~~~~--~~~--~~~--~t~~~~-------------~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~   72 (198)
                      +|+.++|||||+++++...  +..  ...  .+..+.             ....+.+.+  +.+.+|||||+..|...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence            6999999999999996431  111  000  011110             112233444  6788999999988877777


Q ss_pred             cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           73 LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      ..++.+|++++|+|++........  .++..+...  +.|+++|+||+|+...
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~--~~~~~~~~~--~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTE--TVWRQAEKY--GVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHH--HHHHHHHHc--CCCEEEEEECCCCCCC
Confidence            888999999999999887665543  333344444  7999999999998743

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.55  E-value=3.4e-13  Score=105.65  Aligned_cols=83  Identities=23%  Similarity=0.222  Sum_probs=55.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEE---------------------EC-CeEEEEEEEeCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVV---------------------VD-GSTVNLGLWDTA   62 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~---------------------~~-~~~~~l~i~D~~   62 (198)
                      .++|.++|.+++|||||++++.+.... .+|..++.+.......                     .+ ...+.+++||+|
T Consensus         1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a   80 (396)
T PRK09602          1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA   80 (396)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence            368999999999999999999976543 2444444222222111                     11 123678999999


Q ss_pred             Ccc----Ccccccccc---cCCCcEEEEEEECC
Q 029144           63 GQE----DYNRLRPLS---YRGADVFLLAFSLI   88 (198)
Q Consensus        63 G~~----~~~~~~~~~---~~~~~~~i~v~d~~   88 (198)
                      |..    ....+...+   ++++|++++|+|+.
T Consensus        81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            953    233333344   78999999999996

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.53  E-value=1.1e-13  Score=100.44  Aligned_cols=125  Identities=18%  Similarity=0.145  Sum_probs=72.2

Q ss_pred             EEEEEEEeCCCccC-ccc-----cccccc--CCCcEEEEEEECC---ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029144           53 TVNLGLWDTAGQED-YNR-----LRPLSY--RGADVFLLAFSLI---SKASYENVAKKWIPELRHYAPGVPIILVGTKLD  121 (198)
Q Consensus        53 ~~~l~i~D~~G~~~-~~~-----~~~~~~--~~~~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  121 (198)
                      .+...++|||||-. |.-     .....+  ....++++|+|..   ++.+|-...-.-...+.+.  ..|++++.||+|
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilykt--klp~ivvfNK~D  192 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKT--KLPFIVVFNKTD  192 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhc--cCCeEEEEeccc
Confidence            46678999999843 321     111111  2345788888864   4555544323334444444  899999999999


Q ss_pred             cccccccc-------------c--CCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          122 LRDDKQFL-------------A--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       122 l~~~~~~~-------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +.+.....             .  .+.....+......-+-.-+.....+-+||.+|.|.+++|..+-+.+..
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE  265 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence            98764200             0  0111111111111111122333356789999999999999999887744

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=4.5e-14  Score=98.71  Aligned_cols=165  Identities=16%  Similarity=0.166  Sum_probs=102.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccC---CCcEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR---GADVFLL   83 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~---~~~~~i~   83 (198)
                      -.|+++|+.++|||+|+.++..+.......  ..........+++..  +.++|.|||++.+.....++.   .+-+++|
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt--Siepn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT--SIEPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeee--eeccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            469999999999999999999885433321  122233344444433  669999999987754444444   6889999


Q ss_pred             EEECC-ChhhHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccccccc--c------------cCCCCCccccH-----
Q 029144           84 AFSLI-SKASYENVAKKWIPELRHY---APGVPIILVGTKLDLRDDKQF--L------------ADHPGAVPITT-----  140 (198)
Q Consensus        84 v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~--~------------~~~~~~~~~~~-----  140 (198)
                      |+|.. ......+..+.+...+...   ...+|++|+.||.|+.-....  +            ..+...+.+..     
T Consensus       115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~  194 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK  194 (238)
T ss_pred             EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence            99974 3444555545555555554   257999999999999643220  0            00000000100     


Q ss_pred             -----HHHH--HHHHHc-CCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          141 -----AQGE--ELRKLI-GAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       141 -----~~~~--~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                           +++.  +|.+-. .-..|.++|++++ +++++-+|+.+.
T Consensus       195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                 1111  122211 1125788999988 999999998765

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=3.1e-14  Score=115.18  Aligned_cols=172  Identities=16%  Similarity=0.170  Sum_probs=108.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEE-------------C----CeEEEEEEEeCCCccCc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-------------D----GSTVNLGLWDTAGQEDY   67 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~-------------~----~~~~~l~i~D~~G~~~~   67 (198)
                      +..=|||+|+..+|||-|+..+.+....+...+.+...+..++..             +    ...--+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            344589999999999999998887655443333332222211110             0    11133669999999999


Q ss_pred             ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCC-------CCCcccc-
Q 029144           68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADH-------PGAVPIT-  139 (198)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~-------~~~~~~~-  139 (198)
                      ..++.+....||.+|+|+|+..+-.-+.+  +-+..++..  +.|+||++||+|....-..+...       .....+. 
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqti--ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~  629 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTI--ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQN  629 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchh--HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHH
Confidence            99999999999999999999876433333  334455555  89999999999986532111100       0000000 


Q ss_pred             ------HHHHHHHHHH-cC------------CCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          140 ------TAQGEELRKL-IG------------APVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       140 ------~~~~~~~~~~-~~------------~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                            ...+.+|+.+ ++            ...++++||.+|+||.+++.+|++.....
T Consensus       630 EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~  689 (1064)
T KOG1144|consen  630 EFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT  689 (1064)
T ss_pred             HHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence                  0111122221 11            12356799999999999999999876443

>smart00275 G_alpha G protein alpha subunit

Probab=99.50  E-value=8.1e-13  Score=101.94  Aligned_cols=125  Identities=18%  Similarity=0.208  Sum_probs=83.7

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChh----------hHHHHHHHHHHHHhhhC-CCCCEEEEeecCCc
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA----------SYENVAKKWIPELRHYA-PGVPIILVGTKLDL  122 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl  122 (198)
                      +.+.+||.+|+...+..|.+++.++++++||+|+++.+          .+.+....+...+.... .+.|+++++||.|+
T Consensus       184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~  263 (342)
T smart00275      184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL  263 (342)
T ss_pred             eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence            55779999999999999999999999999999998742          34444344444444322 68999999999999


Q ss_pred             ccccccc-------cCCCCCccccHHHHHHHHHH-----cC----C-CEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          123 RDDKQFL-------ADHPGAVPITTAQGEELRKL-----IG----A-PVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       123 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----~~----~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ....-..       ++..+  ..+.+.+..+...     ..    . ...+.++|.+..++..+|+.+.+.+...
T Consensus       264 ~~~Kl~~~~l~~~fp~y~g--~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~  336 (342)
T smart00275      264 FEEKIKKVPLVDYFPDYKG--PNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR  336 (342)
T ss_pred             HHHHhCCCchhccCCCCCC--CCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence            7643211       11111  1233333332221     11    1 1245688999999999999888876544

Subunit of G proteins that contains the guanine nucleotide binding site

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.50  E-value=6.6e-13  Score=105.53  Aligned_cols=173  Identities=18%  Similarity=0.236  Sum_probs=116.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEE-EE--ECCeEEEEEEEeCCCccCcccccccccCCC----
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VV--VDGSTVNLGLWDTAGQEDYNRLRPLSYRGA----   78 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~-~~--~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~----   78 (198)
                      .-.|+|+|..++|||||+.+|.+..   .+.++.+-.|... +.  ..+...++.+|.+.|...+..+....+...    
T Consensus        25 ~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~  101 (472)
T PF05783_consen   25 EKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN  101 (472)
T ss_pred             CceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence            3589999999999999999987543   3334443222221 11  112346788999998777777776666532    


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhhC--------------------------------------------------
Q 029144           79 DVFLLAFSLISKASYENVAKKWIPELRHYA--------------------------------------------------  108 (198)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------------------------------------------------  108 (198)
                      -++|+|+|.+.|+.+-+....|+..++.+.                                                  
T Consensus       102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~  181 (472)
T PF05783_consen  102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES  181 (472)
T ss_pred             eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence            388999999999877655566655554210                                                  


Q ss_pred             ---C----------CCCEEEEeecCCccccccccc-CCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHH
Q 029144          109 ---P----------GVPIILVGTKLDLRDDKQFLA-DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI  174 (198)
Q Consensus       109 ---~----------~~p~iiv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~  174 (198)
                         |          ++|++||++|+|......... -......+...-++.++..+|+ ..|.+|++...+++.++.+|.
T Consensus       182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~yi~  260 (472)
T PF05783_consen  182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYKYIL  260 (472)
T ss_pred             ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHHHHH
Confidence               0          369999999999865322110 0111122344457789999999 677899999999999999999


Q ss_pred             HHHcCCCc
Q 029144          175 KVVLQPPK  182 (198)
Q Consensus       175 ~~~~~~~~  182 (198)
                      +.++...-
T Consensus       261 h~l~~~~f  268 (472)
T PF05783_consen  261 HRLYGFPF  268 (472)
T ss_pred             HHhccCCC
Confidence            98866443

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.49  E-value=1e-12  Score=97.10  Aligned_cols=96  Identities=23%  Similarity=0.272  Sum_probs=77.3

Q ss_pred             cCcccccccccCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHH
Q 029144           65 EDYNRLRPLSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG  143 (198)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  143 (198)
                      ++|..+.+.+++++|.+++|+|+.++. ++..+ ..|+..+...  ++|+++|+||+||.+...          +..+..
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~~--~i~~vIV~NK~DL~~~~~----------~~~~~~   90 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEAQ--NIEPIIVLNKIDLLDDED----------MEKEQL   90 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHHC--CCCEEEEEECcccCCCHH----------HHHHHH
Confidence            578888889999999999999999888 78777 7888776654  899999999999965432          333344


Q ss_pred             HHHHHHcCCCEEEEeccCCCCCHHHHHHHHHH
Q 029144          144 EELRKLIGAPVYIECSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       144 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  175 (198)
                      ..+ ...+. +++++||+++.|++++|..+.+
T Consensus        91 ~~~-~~~g~-~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        91 DIY-RNIGY-QVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             HHH-HHCCC-eEEEEecCCchhHHHHHhhhcC
Confidence            444 34676 7999999999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.49  E-value=2.5e-13  Score=114.27  Aligned_cols=116  Identities=16%  Similarity=0.088  Sum_probs=79.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC--CC---------CCCCC-------ccccce-eEEEEECCeEEEEEEEeCCCcc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FP---------TDYVP-------TVFDNF-SANVVVDGSTVNLGLWDTAGQE   65 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~---------~~~~~-------t~~~~~-~~~~~~~~~~~~l~i~D~~G~~   65 (198)
                      +..+|+++|+.++|||||+++++...  +.         .++.+       |..... ......++..+.+.+|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            45699999999999999999997531  10         01111       111111 1112245566889999999999


Q ss_pred             CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144           66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (198)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  124 (198)
                      .|.......++.+|++++|+|+..+...+.. ..| ......  +.|.++++||+|...
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~-~~~~~~--~~p~ivviNKiD~~~  152 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVL-RQALKE--NVKPVLFINKVDRLI  152 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHH-HHHHHc--CCCEEEEEEChhccc
Confidence            9887777889999999999999875443332 222 233233  688899999999964

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK13768 GTPase; Provisional

Probab=99.48  E-value=2.8e-13  Score=100.56  Aligned_cols=123  Identities=17%  Similarity=0.144  Sum_probs=70.7

Q ss_pred             EEEEEeCCCccCcc---cccccccC---C--CcEEEEEEECCChhhHHHHH-HHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           55 NLGLWDTAGQEDYN---RLRPLSYR---G--ADVFLLAFSLISKASYENVA-KKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        55 ~l~i~D~~G~~~~~---~~~~~~~~---~--~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      .+.+||+||+.+..   ..+..+++   .  ++++++|+|+.......+.. ..|+........+.|+++|+||+|+.+.
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            56799999986532   23322222   2  88999999996544333321 1222222211238999999999999765


Q ss_pred             cccc-----cCC----------CCC--ccccHHHHHHHHHHcC-CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          126 KQFL-----ADH----------PGA--VPITTAQGEELRKLIG-APVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       126 ~~~~-----~~~----------~~~--~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      ....     ...          ...  .... ....+..+..+ ..+++++|++++.|+++++++|.+.+.
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~-~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLS-LELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHH-HHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence            3200     000          000  0000 00111122333 226899999999999999999988774

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.46  E-value=1.8e-13  Score=106.68  Aligned_cols=164  Identities=16%  Similarity=0.044  Sum_probs=116.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc---------ccccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---------LRPLS   74 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------~~~~~   74 (198)
                      ..-.++++|.|++|||||++.+..... ..+|..|+...+.....+..  ..+++.||||.-+.--         .....
T Consensus       167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykY--lrwQViDTPGILD~plEdrN~IEmqsITAL  244 (620)
T KOG1490|consen  167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKY--LRWQVIDTPGILDRPEEDRNIIEMQIITAL  244 (620)
T ss_pred             CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhhe--eeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence            445789999999999999988876543 56777788766666666655  5667999999532110         00111


Q ss_pred             cCCCcEEEEEEECC--ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH--HHHHHHHc
Q 029144           75 YRGADVFLLAFSLI--SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ--GEELRKLI  150 (198)
Q Consensus        75 ~~~~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  150 (198)
                      .+-..+++|+.|++  ++.|.... -.+...+...+.+.|+|+|+||+|+.....          ++.+.  +.+...+.
T Consensus       245 AHLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~ed----------L~~~~~~ll~~~~~~  313 (620)
T KOG1490|consen  245 AHLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPED----------LDQKNQELLQTIIDD  313 (620)
T ss_pred             HHhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCccc----------cCHHHHHHHHHHHhc
Confidence            12245788888886  56677776 677788888888999999999999987654          44443  22333334


Q ss_pred             CCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          151 GAPVYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      +..+++++|+.+.+|+.++.....+.++..+
T Consensus       314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  314 GNVKVVQTSCVQEEGVMDVRTTACEALLAAR  344 (620)
T ss_pred             cCceEEEecccchhceeeHHHHHHHHHHHHH
Confidence            4348999999999999999988888775543

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.45  E-value=2e-12  Score=95.45  Aligned_cols=120  Identities=17%  Similarity=0.119  Sum_probs=74.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCC--CCCCccccceeEEEEECCeEEEEEEEeCCCccCccc---c-------c
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---L-------R   71 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~-------~   71 (198)
                      ...++|+++|.+|+|||||+|++++.....  ...+++..........++  ..+.+|||||......   .       .
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            357999999999999999999999875422  222333322223334455  5677999999654421   0       1


Q ss_pred             ccccC--CCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCC---CCCEEEEeecCCcccccc
Q 029144           72 PLSYR--GADVFLLAFSLISKA-SYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDKQ  127 (198)
Q Consensus        72 ~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~  127 (198)
                      ..++.  ..+++++|..++... ...+  ..+++.+...+.   -.++++|.||+|...+..
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~  166 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPPDG  166 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence            11232  478888887665432 2221  344445554332   357999999999986544

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.45  E-value=2.5e-12  Score=92.03  Aligned_cols=102  Identities=21%  Similarity=0.224  Sum_probs=63.6

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE--EEEeecCCcccccccccC
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI--ILVGTKLDLRDDKQFLAD  131 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~--iiv~nK~Dl~~~~~~~~~  131 (198)
                      ....+.++.|......... .  -++.++.|+|+.+.++...   .+.       +++..  ++++||+|+.+...    
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~---~~~-------~qi~~ad~~~~~k~d~~~~~~----  154 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR---KGG-------PGITRSDLLVINKIDLAPMVG----  154 (199)
T ss_pred             CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh---hhH-------hHhhhccEEEEEhhhcccccc----
Confidence            4455778888422222221 1  2578999999987665321   111       13334  88999999975311    


Q ss_pred             CCCCccccHHHHHHHHHH-cCCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          132 HPGAVPITTAQGEELRKL-IGAPVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                            ...+...+..+. ....+++++||++|.|++++|+++.+.+.
T Consensus       155 ------~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       155 ------ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             ------ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence                  222333333333 23347999999999999999999997654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.45  E-value=1.9e-12  Score=97.24  Aligned_cols=119  Identities=15%  Similarity=0.168  Sum_probs=71.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc-------cccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSY   75 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~   75 (198)
                      +.++|+++|.+|+||||++|++++....  ....++...........++  ..+.++||||........       ..++
T Consensus        37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l  114 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL  114 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence            6789999999999999999999987542  2222221111122233455  567899999976432111       1111


Q ss_pred             --CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccccc
Q 029144           76 --RGADVFLLAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDK  126 (198)
Q Consensus        76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~  126 (198)
                        ...|+++||..++... +......++..+...+.   ..+++++.|+.|..+.+
T Consensus       115 ~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd  169 (313)
T TIGR00991       115 LGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD  169 (313)
T ss_pred             hcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence              2589999996654321 11111334444444431   46789999999987543

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.44  E-value=1.2e-12  Score=98.16  Aligned_cols=158  Identities=17%  Similarity=0.152  Sum_probs=101.1

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCC--C--------CC--CCccccce-----------------eEEEEE--
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFP--T--------DY--VPTVFDNF-----------------SANVVV--   49 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~--~--------~~--~~t~~~~~-----------------~~~~~~--   49 (198)
                      |+....++.+-+|+..-||||||-||+.+.-.  +        ..  ..+.+..+                 ...+.+  
T Consensus         1 ~~~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy   80 (431)
T COG2895           1 QQHKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY   80 (431)
T ss_pred             CCcccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee
Confidence            34567899999999999999999999865210  0        00  11111111                 111111  


Q ss_pred             -CCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc
Q 029144           50 -DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  128 (198)
Q Consensus        50 -~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  128 (198)
                       .-.+-++.+-|||||+.|...+-...+.||++|+++|+..+-.-+.-+.   ..+.....=..+++++||+||.+-.+ 
T Consensus        81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH---s~I~sLLGIrhvvvAVNKmDLvdy~e-  156 (431)
T COG2895          81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRH---SFIASLLGIRHVVVAVNKMDLVDYSE-  156 (431)
T ss_pred             cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHH---HHHHHHhCCcEEEEEEeeecccccCH-
Confidence             1223456699999999999888888889999999999954433222222   22333333457788899999987442 


Q ss_pred             ccCCCCCccccHHHHHHHHHHcCCC--EEEEeccCCCCCHH
Q 029144          129 LADHPGAVPITTAQGEELRKLIGAP--VYIECSSKTQQNVK  167 (198)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~i~  167 (198)
                           +.......+...|+.+++..  .++++||+.|+|+-
T Consensus       157 -----~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         157 -----EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             -----HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence                 11112334455677777653  48999999998864

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.43  E-value=7.9e-14  Score=102.27  Aligned_cols=121  Identities=19%  Similarity=0.127  Sum_probs=60.9

Q ss_pred             EEEEEeCCCccCccccccccc--------CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 029144           55 NLGLWDTAGQEDYNRLRPLSY--------RGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD  125 (198)
Q Consensus        55 ~l~i~D~~G~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~  125 (198)
                      .+.++|||||-++-..|...-        ...-++++++|.....+.......++..+.... -+.|.+.|+||+|+.+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            566999999987654443221        334588999998644332222122222222211 28999999999999872


Q ss_pred             ccc--c------------cCCCCCccccHHHHHHHHHHcCCC-EEEEeccCCCCCHHHHHHHHHHHH
Q 029144          126 KQF--L------------ADHPGAVPITTAQGEELRKLIGAP-VYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       126 ~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      ...  .            ....  ...-.+...++....+.. .++.+|+.+++++.+++..+-+++
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~--~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESD--YKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT---HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHH--HHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            210  0            0000  001112222333345665 789999999999999999887754

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=7e-13  Score=94.69  Aligned_cols=172  Identities=12%  Similarity=0.149  Sum_probs=105.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCc-cc--ccccccCCCcEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-NR--LRPLSYRGADVFLL   83 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-~~--~~~~~~~~~~~~i~   83 (198)
                      -+|+++|...+||||+....++...+.++-......-...-.+.+.-+.+++||.|||-.+ ..  .....++++.+.++
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif  107 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF  107 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence            4599999999999999987776654332111111000111112335578899999998654 22  23456889999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      |+|+++.  +.+....+...+.+..   |++.+-+...|.|...+......+....+...+++.......--..|+ ..+
T Consensus       108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~-LTS  184 (347)
T KOG3887|consen  108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFY-LTS  184 (347)
T ss_pred             EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEE-Eee
Confidence            9998753  3333355555555433   789999999999988765432222222222333333322222111344 455


Q ss_pred             CCCCCHHHHHHHHHHHHcCCC
Q 029144          161 KTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ....+|.|.|.++++.+...-
T Consensus       185 IyDHSIfEAFSkvVQkLipqL  205 (347)
T KOG3887|consen  185 IYDHSIFEAFSKVVQKLIPQL  205 (347)
T ss_pred             ecchHHHHHHHHHHHHHhhhc
Confidence            556899999999999887643

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.41  E-value=1.5e-12  Score=100.13  Aligned_cols=166  Identities=16%  Similarity=0.188  Sum_probs=84.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCC-CCCcc--ccce-eEEEEECCeEEEEEEEeCCCccCccc-----cccccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV--FDNF-SANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSY   75 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~-~~~t~--~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~~~   75 (198)
                      .+++|+|+|.+|+|||||||++.+-.-.++ ..+|.  .... ...+... ..-.+.+||.||..--..     +...-+
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            578999999999999999999986432221 12221  1111 1222221 122466999999532211     112335


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc--cccccccCCCCCccccH----HHHHHHHHH
Q 029144           76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR--DDKQFLADHPGAVPITT----AQGEELRKL  149 (198)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~--~~~~~~~~~~~~~~~~~----~~~~~~~~~  149 (198)
                      ...|.+|++.+-.    |....-.+...++..  ++|+.+|-+|+|..  ..+.     ...+..+.    ++.++.+.+
T Consensus       113 ~~yD~fiii~s~r----f~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~-----~~p~~f~~e~~L~~IR~~c~~  181 (376)
T PF05049_consen  113 YRYDFFIIISSER----FTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERR-----RKPRTFNEEKLLQEIRENCLE  181 (376)
T ss_dssp             GG-SEEEEEESSS------HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHC-----C-STT--HHTHHHHHHHHHHH
T ss_pred             cccCEEEEEeCCC----CchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhc-----cCCcccCHHHHHHHHHHHHHH
Confidence            6678888877642    333334667788887  89999999999962  1111     11111222    222322222


Q ss_pred             ------cCCCEEEEeccCC--CCCHHHHHHHHHHHHcCCCc
Q 029144          150 ------IGAPVYIECSSKT--QQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       150 ------~~~~~~~~~Sa~~--~~~i~~~~~~i~~~~~~~~~  182 (198)
                            ...+++|-+|+.+  ..+...+.+.+.+.+.....
T Consensus       182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence                  1335688899987  45688888888877765444

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.40  E-value=3.3e-13  Score=95.57  Aligned_cols=166  Identities=17%  Similarity=0.241  Sum_probs=100.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCC-CC--CccccceeEEEEECCeEEEEEEEeCCCccCc-----ccccccccCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD-YV--PTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYRG   77 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~~~~~~~~~~   77 (198)
                      .-||+++|..|+||||+-..++.+....+ ..  +|...........++  ..+.+||++||+.+     .+.....+++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn--l~LnlwDcGgqe~fmen~~~~q~d~iF~n   81 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN--LVLNLWDCGGQEEFMENYLSSQEDNIFRN   81 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh--heeehhccCCcHHHHHHHHhhcchhhhee
Confidence            45899999999999999876665533211 11  111111122222333  77889999999854     3466788999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHH---HHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           78 ADVFLLAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      .+++++|||++..+-..++ ..+   ++.+-.+.|...+....+|+|+...+.    +......-.+....+....++ .
T Consensus        82 V~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~----r~~if~~r~~~l~~~s~~~~~-~  155 (295)
T KOG3886|consen   82 VQVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA----RELIFQRRKEDLRRLSRPLEC-K  155 (295)
T ss_pred             heeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhcccch----HHHHHHHHHHHHHHhcccccc-c
Confidence            9999999999987665555 333   445555667888889999999976432    011111111222223333343 5


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ++.+|..+ +.+......+...+...
T Consensus       156 ~f~TsiwD-etl~KAWS~iv~~lipn  180 (295)
T KOG3886|consen  156 CFPTSIWD-ETLYKAWSSIVYNLIPN  180 (295)
T ss_pred             ccccchhh-HHHHHHHHHHHHhhCCC
Confidence            77766654 45555555555555443

>cd01882 BMS1 Bms1

Probab=99.39  E-value=9.6e-12  Score=90.88  Aligned_cols=142  Identities=20%  Similarity=0.157  Sum_probs=83.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .+..|+++|.+|+|||||++.+....-........+. +  .+ .......+.++|+||.-  ... ....+.+|++++|
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv  110 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLL  110 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence            4678999999999999999988864211111111111 1  11 11233556799999863  212 1235779999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeecCCcccccccccCCCCCccccHHHHHH-HHH-HcCCCEEEEeccC
Q 029144           85 FSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRDDKQFLADHPGAVPITTAQGEE-LRK-LIGAPVYIECSSK  161 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Sa~  161 (198)
                      +|++.+.....  ..++..+...  +.|.+ +|+||+|+.+...       ......+.++. +.. .....+++.+||+
T Consensus       111 iDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~-------~~~~~~~~l~~~~~~~~~~~~ki~~iSa~  179 (225)
T cd01882         111 IDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNK-------TLRKTKKRLKHRFWTEVYQGAKLFYLSGI  179 (225)
T ss_pred             EecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHH-------HHHHHHHHHHHHHHHhhCCCCcEEEEeec
Confidence            99986554433  3455555544  67754 5999999964321       00011122222 322 2234479999999


Q ss_pred             CCC
Q 029144          162 TQQ  164 (198)
Q Consensus       162 ~~~  164 (198)
                      +.-
T Consensus       180 ~~~  182 (225)
T cd01882         180 VHG  182 (225)
T ss_pred             cCC
Confidence            863

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.39  E-value=1.3e-11  Score=95.39  Aligned_cols=155  Identities=15%  Similarity=0.186  Sum_probs=97.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC----CC-------------CCCCCC---c-cccce-e-EEEE---ECCeEEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN----TF-------------PTDYVP---T-VFDNF-S-ANVV---VDGSTVNLGLW   59 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~----~~-------------~~~~~~---t-~~~~~-~-~~~~---~~~~~~~l~i~   59 (198)
                      .+.|.++|+.++|||||+++|.+.    .+             +....+   | +...+ + ..+.   .++....+.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            588999999999999999999876    22             222223   2 22223 0 1122   24556788899


Q ss_pred             eCCCccCcc-------cc----------------------cccccC-CCcEEEEEE-ECC----ChhhHHHHHHHHHHHH
Q 029144           60 DTAGQEDYN-------RL----------------------RPLSYR-GADVFLLAF-SLI----SKASYENVAKKWIPEL  104 (198)
Q Consensus        60 D~~G~~~~~-------~~----------------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~~~~~~~~~~  104 (198)
                      ||+|-..-.       ..                      ....+. .+++.++|. |.+    .++.+.....+++..+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            999932210       00                      122344 788888888 653    1234555567888888


Q ss_pred             hhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC--CCCHHHHHHHHHH
Q 029144          105 RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT--QQNVKAVFDAAIK  175 (198)
Q Consensus       105 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~~  175 (198)
                      ...  ++|+++++|+.|-..+            ...+...++..+++. +++.+|+.+  .+.+..++..+.-
T Consensus       177 k~~--~kPfiivlN~~dp~~~------------et~~l~~~l~eky~v-pvl~v~c~~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       177 KEL--NKPFIILLNSTHPYHP------------ETEALRQELEEKYDV-PVLAMDVESMRESDILSVLEEVLY  234 (492)
T ss_pred             Hhc--CCCEEEEEECcCCCCc------------hhHHHHHHHHHHhCC-ceEEEEHHHcCHHHHHHHHHHHHh
Confidence            888  9999999999994321            233344566667776 566666654  4455555555443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.38  E-value=4.1e-12  Score=107.23  Aligned_cols=116  Identities=13%  Similarity=0.092  Sum_probs=77.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC--CCCCC---------CCCccc---cce---eEEE--EECCeEEEEEEEeCCCcc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTD---------YVPTVF---DNF---SANV--VVDGSTVNLGLWDTAGQE   65 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~~---------~~~t~~---~~~---~~~~--~~~~~~~~l~i~D~~G~~   65 (198)
                      +.-+|+++|+.++|||||+.+++..  .+...         +.+...   ..+   ...+  .+++..+.+.++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            4558999999999999999999853  11111         001000   000   0111  224445788899999999


Q ss_pred             CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144           66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (198)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  124 (198)
                      .|.......++.+|++++|+|+..+...... ..| ......  +.|.++++||+|+..
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~-~~~~~~--~~~~iv~iNK~D~~~  153 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVL-RQALRE--RVKPVLFINKVDRLI  153 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHH-HHHHHc--CCCeEEEEECchhhc
Confidence            9988778888999999999999876544332 333 333333  578899999999864

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.38  E-value=1.2e-12  Score=111.65  Aligned_cols=116  Identities=14%  Similarity=0.120  Sum_probs=80.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCC--CCCC---------CCCcc---ccce---eEEEEE--------------CCe
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD---------YVPTV---FDNF---SANVVV--------------DGS   52 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~---------~~~t~---~~~~---~~~~~~--------------~~~   52 (198)
                      ++.-+|+++|+.++|||||+.+++...  +...         +.+..   +..+   ...+.+              .+.
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            356699999999999999999998542  1111         00100   0000   011122              123


Q ss_pred             EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  123 (198)
                      .+.++++||||+.+|.......++.+|++|+|+|+..+-.....  ..+..+...  ++|+++++||+|+.
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~--~~~~~~~~~--~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE--TVLRQALGE--RIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH--HHHHHHHHC--CCCEEEEEECCccc
Confidence            57788999999999988888888999999999999877554443  333344444  79999999999997

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.38  E-value=1.8e-11  Score=94.99  Aligned_cols=161  Identities=16%  Similarity=0.138  Sum_probs=108.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCcc------------ccc-eeEEEEECCeEEEEEEEeCCCccCccccc
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTV------------FDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLR   71 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~------------~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~   71 (198)
                      =+|+++-+..-|||||+..++..  .|.+...-..            +-. ..+...+....+.++|.|||||..|.-..
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            48999999999999999999854  2222111110            001 11122223334788899999999999999


Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH--
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL--  149 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--  149 (198)
                      .+.++-+|++++++|+..+.--+.  ...+...-.  .+.+-|+|+||+|.+..+.         ..-.++...+...  
T Consensus        86 ERvl~MVDgvlLlVDA~EGpMPQT--rFVlkKAl~--~gL~PIVVvNKiDrp~Arp---------~~Vvd~vfDLf~~L~  152 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGPMPQT--RFVLKKALA--LGLKPIVVINKIDRPDARP---------DEVVDEVFDLFVELG  152 (603)
T ss_pred             hhhhhhcceEEEEEEcccCCCCch--hhhHHHHHH--cCCCcEEEEeCCCCCCCCH---------HHHHHHHHHHHHHhC
Confidence            999999999999999987643222  222222222  2788888999999987542         1223333333333  


Q ss_pred             -----cCCCEEEEeccCCC----------CCHHHHHHHHHHHHcCCC
Q 029144          150 -----IGAPVYIECSSKTQ----------QNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       150 -----~~~~~~~~~Sa~~~----------~~i~~~~~~i~~~~~~~~  181 (198)
                           +.+ |++..|+.+|          .++..+|+.|++.+..+.
T Consensus       153 A~deQLdF-PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         153 ATDEQLDF-PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CChhhCCC-cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence                 455 6788899877          478999999999987665

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.36  E-value=1.3e-11  Score=94.27  Aligned_cols=108  Identities=18%  Similarity=0.179  Sum_probs=67.5

Q ss_pred             EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCC
Q 029144           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADH  132 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~  132 (198)
                      .+.+.|.||+|...-...   ....+|.++++.+...++..+.. ..  ..+     ...-++|+||+|+.+...     
T Consensus       148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~-k~--gi~-----E~aDIiVVNKaDl~~~~~-----  211 (332)
T PRK09435        148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI-KK--GIM-----ELADLIVINKADGDNKTA-----  211 (332)
T ss_pred             CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH-Hh--hhh-----hhhheEEeehhcccchhH-----
Confidence            367789999997532221   45679999999876555555443 21  111     223389999999875321     


Q ss_pred             CCCccccHHHHHHHHHHc-----CC-CEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          133 PGAVPITTAQGEELRKLI-----GA-PVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~-----~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                         ......+........     ++ ++++.+||+++.|++++++.+.+.+..
T Consensus       212 ---a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~  261 (332)
T PRK09435        212 ---ARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA  261 (332)
T ss_pred             ---HHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence               001112222222211     12 478999999999999999999997643

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.6e-11  Score=92.02  Aligned_cols=170  Identities=16%  Similarity=0.189  Sum_probs=104.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhC----CCCCCCCCcccc-ce---eEEEE-------ECCeEEEEEEEeCCCccCc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSN----TFPTDYVPTVFD-NF---SANVV-------VDGSTVNLGLWDTAGQEDY   67 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~----~~~~~~~~t~~~-~~---~~~~~-------~~~~~~~l~i~D~~G~~~~   67 (198)
                      .+..+++.++|+..+|||||.+++..-    .++....+++.. ..   -..+.       ..++..++.++|+||+...
T Consensus         4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL   83 (522)
T KOG0461|consen    4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL   83 (522)
T ss_pred             CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence            345799999999999999999999753    233332333211 00   11111       2355678899999999664


Q ss_pred             ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccc-cHHHHHHH
Q 029144           68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPI-TTAQGEEL  146 (198)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~  146 (198)
                      -........-.|..++|+|+..+..-+.++-.++..+.    -...++|+||.|..++..        +.- ..+.....
T Consensus        84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~q--------r~ski~k~~kk~  151 (522)
T KOG0461|consen   84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQ--------RASKIEKSAKKV  151 (522)
T ss_pred             HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchh--------hhhHHHHHHHHH
Confidence            44333333446889999999877666555222222222    234567778888766532        111 11111222


Q ss_pred             HH---H---cCCCEEEEeccCCC----CCHHHHHHHHHHHHcCCCcch
Q 029144          147 RK---L---IGAPVYIECSSKTQ----QNVKAVFDAAIKVVLQPPKNK  184 (198)
Q Consensus       147 ~~---~---~~~~~~~~~Sa~~~----~~i~~~~~~i~~~~~~~~~~~  184 (198)
                      ..   .   .+..|++++||..|    +++.++.+.+-..+..+.+..
T Consensus       152 ~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~  199 (522)
T KOG0461|consen  152 RKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE  199 (522)
T ss_pred             HHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence            22   1   24358999999999    788888888888887766554

>PTZ00416 elongation factor 2; Provisional

Probab=99.34  E-value=5.8e-12  Score=107.46  Aligned_cols=116  Identities=11%  Similarity=0.117  Sum_probs=79.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCcc------c------cce---eEEEEEC--------CeEEEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTV------F------DNF---SANVVVD--------GSTVNLGL   58 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~------~------~~~---~~~~~~~--------~~~~~l~i   58 (198)
                      ++.-+|+++|+.++|||||+++++..  .+......++      .      ..+   .....+.        +..+.+.+
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l   96 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL   96 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence            34559999999999999999999863  2111111100      0      000   0112222        22567889


Q ss_pred             EeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144           59 WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (198)
Q Consensus        59 ~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  123 (198)
                      .||||+..|.......++.+|++|+|+|+..+-.....  .++..+...  +.|+++++||+|+.
T Consensus        97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~--~~~~~~~~~--~~p~iv~iNK~D~~  157 (836)
T PTZ00416         97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE--TVLRQALQE--RIRPVLFINKVDRA  157 (836)
T ss_pred             EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH--HHHHHHHHc--CCCEEEEEEChhhh
Confidence            99999999888778888999999999999886554433  333444444  68999999999997

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.34  E-value=2.7e-11  Score=80.14  Aligned_cols=113  Identities=27%  Similarity=0.367  Sum_probs=78.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCC-CccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|..|+|||+|+.++....+...+. +|.+                          +........+.++.+++|+
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~   54 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW   54 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence            589999999999999999998877755443 3333                          2233344567789999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      +.++..++...   |...+.... .+.|.++++||.|+.+...          +..++..         .++++|++++.
T Consensus        55 ~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~----------~~~~~~~---------~~~~~s~~~~~  112 (124)
T smart00010       55 RVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQ----------VATEEGL---------EFAETSAKTPE  112 (124)
T ss_pred             EccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCc----------CCHHHHH---------HHHHHhCCCcc
Confidence            99999988643   544444433 4688999999999843211          2222221         35677888888


Q ss_pred             CHH
Q 029144          165 NVK  167 (198)
Q Consensus       165 ~i~  167 (198)
                      |+.
T Consensus       113 ~~~  115 (124)
T smart00010      113 EGE  115 (124)
T ss_pred             hhh
Confidence            874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.34  E-value=3.9e-11  Score=86.69  Aligned_cols=152  Identities=13%  Similarity=0.096  Sum_probs=84.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCC------------CCCCCccccce-eEEEEECC-------------------
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP------------TDYVPTVFDNF-SANVVVDG-------------------   51 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~------------~~~~~t~~~~~-~~~~~~~~-------------------   51 (198)
                      .....|.++|+.|+|||||+++++.....            ........... ...+.+.+                   
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~   99 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP   99 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence            34678999999999999999888753110            00000000000 00111110                   


Q ss_pred             -eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc
Q 029144           52 -STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA  130 (198)
Q Consensus        52 -~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~  130 (198)
                       ....+.+.|+.|.-...   ..+....+..+.|+|+.+.+.....   ..   ...  ..|.++++||+|+.+...   
T Consensus       100 ~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~~---~~---~~~--~~a~iiv~NK~Dl~~~~~---  165 (207)
T TIGR00073       100 LDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPLK---YP---GMF--KEADLIVINKADLAEAVG---  165 (207)
T ss_pred             cCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhhh---hH---hHH--hhCCEEEEEHHHccccch---
Confidence             12456688888721100   1111234556778888765432111   11   111  467899999999975321   


Q ss_pred             CCCCCccccHHHHHHHHHHc-CCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          131 DHPGAVPITTAQGEELRKLI-GAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                             .......+..+.. ...+++++||+++.|++++++++.+.
T Consensus       166 -------~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       166 -------FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             -------hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence                   1222333333333 22379999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.33  E-value=4.3e-11  Score=86.72  Aligned_cols=162  Identities=19%  Similarity=0.177  Sum_probs=92.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCC---CccccceeEEEEECCeEEEEEEEeCCCccCcccc-------c----c
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------R----P   72 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~----~   72 (198)
                      ++|+++|..|+||||++|.+++........   +.+.........+++  ..+.++||||-..-...       .    .
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            589999999999999999999876543321   222223333446677  45669999994221110       0    1


Q ss_pred             cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeecCCcccccccccCCCCCcc-cc---HHHHHH
Q 029144           73 LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDKQFLADHPGAVP-IT---TAQGEE  145 (198)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~~---~~~~~~  145 (198)
                      ....+.+++++|+.+.. -+..+  ...+..+...++   -..++||.|..|...+..       ... +.   ...++.
T Consensus        79 ~~~~g~ha~llVi~~~r-~t~~~--~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~-------~~~~l~~~~~~~l~~  148 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLGR-FTEED--REVLELLQEIFGEEIWKHTIVVFTHADELEDDS-------LEDYLKKESNEALQE  148 (212)
T ss_dssp             HTTT-ESEEEEEEETTB--SHHH--HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT-------HHHHHHHHHHHHHHH
T ss_pred             hccCCCeEEEEEEecCc-chHHH--HHHHHHHHHHccHHHHhHhhHHhhhcccccccc-------HHHHHhccCchhHhH
Confidence            12356899999999883 22222  233333333331   346888889888765431       000 11   123556


Q ss_pred             HHHHcCCCEEEEeccC------CCCCHHHHHHHHHHHHcCCC
Q 029144          146 LRKLIGAPVYIECSSK------TQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       146 ~~~~~~~~~~~~~Sa~------~~~~i~~~~~~i~~~~~~~~  181 (198)
                      +....+. .|+..+..      ....+.+++..+-+.+....
T Consensus       149 li~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  149 LIEKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG  189 (212)
T ss_dssp             HHHHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhhhcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence            6777776 57766666      33567888888877775543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PTZ00258 GTP-binding protein; Provisional

Probab=99.31  E-value=1.1e-10  Score=90.84  Aligned_cols=84  Identities=20%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCcc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN   68 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~   68 (198)
                      ..++|.++|.||+|||||++++.+... ..++..|+.+.....+.+.+.               ..++.++|+||...-.
T Consensus        20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga   99 (390)
T PTZ00258         20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA   99 (390)
T ss_pred             CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence            467999999999999999999976543 345666665555444444322               2347899999954321


Q ss_pred             c----c---cccccCCCcEEEEEEECC
Q 029144           69 R----L---RPLSYRGADVFLLAFSLI   88 (198)
Q Consensus        69 ~----~---~~~~~~~~~~~i~v~d~~   88 (198)
                      +    +   .-..++++|++++|+|..
T Consensus       100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258        100 SEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1    1   112357899999999973

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.29  E-value=1.6e-11  Score=93.49  Aligned_cols=126  Identities=18%  Similarity=0.185  Sum_probs=81.7

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHH---HH---HHHHHHhh----hC-CCCCEEEEeecCCc
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV---AK---KWIPELRH----YA-PGVPIILVGTKLDL  122 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~---~~---~~~~~~~~----~~-~~~p~iiv~nK~Dl  122 (198)
                      ..+.++|.+||...+..|.+.+.+++++|||++++..+....-   ..   +-+..+..    .. .+.++++++||.|+
T Consensus       195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL  274 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL  274 (354)
T ss_pred             CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence            6677999999999999999999999999999999875432111   01   11222222    11 58999999999999


Q ss_pred             ccccccc-------cCCCCCccccHHHHHHHHH--------HcCCC-EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          123 RDDKQFL-------ADHPGAVPITTAQGEELRK--------LIGAP-VYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       123 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ..+....       ++..+.  -..+++..+..        ...-. -++.++|.+..+|+.+|..+.+.+....
T Consensus       275 FeEKi~~~~~~~~Fpdy~G~--~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  275 FEEKIKKVPLTDCFPDYKGV--NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             HHHHhccCchhhhCcCCCCC--CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            8754311       111111  22333332222        11111 2445899999999999999998876544

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.29  E-value=3.2e-10  Score=81.78  Aligned_cols=154  Identities=17%  Similarity=0.207  Sum_probs=108.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc-------cccccC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RPLSYR   76 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~~~~~~   76 (198)
                      -.-+|+++|.|.+|||||+..+..... ...|..|+...++..+.+++.  .+++.|.||.-.-.+.       .-...+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence            356899999999999999988875432 346777888888888889884  4569999995433222       223456


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhC----C-------------------------------------------
Q 029144           77 GADVFLLAFSLISKASYENVAKKWIPELRHYA----P-------------------------------------------  109 (198)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~-------------------------------------------  109 (198)
                      .+|.+++|+|++..+.-....+.-+.......    |                                           
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl  218 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL  218 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence            79999999999876554433222222222110    1                                           


Q ss_pred             -------------------CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHH
Q 029144          110 -------------------GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF  170 (198)
Q Consensus       110 -------------------~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  170 (198)
                                         -++++-|-||+|.               ++.++...+++..+.   +-+|+....|++.++
T Consensus       219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~---------------vs~eevdrlAr~Pns---vViSC~m~lnld~ll  280 (364)
T KOG1486|consen  219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ---------------VSIEEVDRLARQPNS---VVISCNMKLNLDRLL  280 (364)
T ss_pred             EecCCChHHHHHHHhccceEEEEEEEeeccce---------------ecHHHHHHHhcCCCc---EEEEeccccCHHHHH
Confidence                               1366677777776               788888888888765   347888889999999


Q ss_pred             HHHHHHHc
Q 029144          171 DAAIKVVL  178 (198)
Q Consensus       171 ~~i~~~~~  178 (198)
                      +.+-+.+.
T Consensus       281 e~iWe~l~  288 (364)
T KOG1486|consen  281 ERIWEELN  288 (364)
T ss_pred             HHHHHHhc
Confidence            99988763

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.28  E-value=1.6e-10  Score=86.83  Aligned_cols=116  Identities=17%  Similarity=0.253  Sum_probs=67.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCC---C-------Ccc-ccceeEEEEECCeEEEEEEEeCCCccCc-------
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY---V-------PTV-FDNFSANVVVDGSTVNLGLWDTAGQEDY-------   67 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~---~-------~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------   67 (198)
                      .++|+|+|.+|+|||||++.|++.......   .       .+. .......+.-++..+.+.++||||-...       
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999986543321   0       011 1111223344678899999999992211       


Q ss_pred             -----------c-------ccccccc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           68 -----------N-------RLRPLSY--RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        68 -----------~-------~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                                 .       ...+..+  ...|+++|.++.+.. .+....-..+..+..   .+++|-|+.|+|....
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls~---~vNvIPvIaKaD~lt~  157 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLSK---RVNVIPVIAKADTLTP  157 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHTT---TSEEEEEESTGGGS-H
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhcc---cccEEeEEecccccCH
Confidence                       0       0000111  236899999998642 222222344455555   4889999999999654

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.25  E-value=4.2e-11  Score=83.63  Aligned_cols=63  Identities=21%  Similarity=0.147  Sum_probs=46.1

Q ss_pred             EEEEEeCCCccCc----ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029144           55 NLGLWDTAGQEDY----NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL  120 (198)
Q Consensus        55 ~l~i~D~~G~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  120 (198)
                      .+.|+|+||....    ...+..++..+|++++|.++++..+-.+. ..+.+.....  ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence            3679999996432    24456677999999999999997776665 6666666666  44588999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.24  E-value=8.3e-10  Score=85.13  Aligned_cols=82  Identities=20%  Similarity=0.200  Sum_probs=56.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCcccc
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYNRL   70 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~~~   70 (198)
                      ++|.++|.|++|||||++++.+... ..++..|+.+.....+.+.+.               ...+.+.|+||...-.+.
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            7899999999999999999997653 345556665444444444332               135789999996432111


Q ss_pred             -------cccccCCCcEEEEEEECC
Q 029144           71 -------RPLSYRGADVFLLAFSLI   88 (198)
Q Consensus        71 -------~~~~~~~~~~~i~v~d~~   88 (198)
                             .-..++.+|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                   112357899999999984

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=5.1e-11  Score=94.65  Aligned_cols=158  Identities=15%  Similarity=0.119  Sum_probs=96.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC--CCCC------------------------CCCCcc---ccce-eEEEEECCeEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------DYVPTV---FDNF-SANVVVDGSTV   54 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~------------------------~~~~t~---~~~~-~~~~~~~~~~~   54 (198)
                      ..++++++|+..+|||||+.+++..  .+..                        ......   +..+ .....++....
T Consensus       176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~  255 (603)
T KOG0458|consen  176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK  255 (603)
T ss_pred             cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence            3578999999999999999887742  1110                        000111   0011 12233455567


Q ss_pred             EEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHH-----HHHHHHHHhhhCCCCCEEEEeecCCcccccccc
Q 029144           55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV-----AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL  129 (198)
Q Consensus        55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~-----~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  129 (198)
                      .+++.|+||+..|-........++|++++|+|++....-...     ..+....++.. .-..++|++||+|+.+=.+  
T Consensus       256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Wsq--  332 (603)
T KOG0458|consen  256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-GISQLIVAINKMDLVSWSQ--  332 (603)
T ss_pred             eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-CcceEEEEeecccccCccH--
Confidence            888999999999988888888999999999999764322111     11222222222 2456788999999986221  


Q ss_pred             cCCCCCccccHHHHHHHH-HHcCC----CEEEEeccCCCCCHHHH
Q 029144          130 ADHPGAVPITTAQGEELR-KLIGA----PVYIECSSKTQQNVKAV  169 (198)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~~~  169 (198)
                          .........+..|. ...|+    ..|+++|+..|+|+-..
T Consensus       333 ----~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  333 ----DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             ----HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence                00011222233344 33333    25899999999987543

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=1.7e-10  Score=89.00  Aligned_cols=116  Identities=16%  Similarity=0.115  Sum_probs=81.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh--hCCCCC--------CCCCcc----------ccc-eeEEEEECCeEEEEEEEeCCCc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYT--SNTFPT--------DYVPTV----------FDN-FSANVVVDGSTVNLGLWDTAGQ   64 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~--~~~~~~--------~~~~t~----------~~~-~~~~~~~~~~~~~l~i~D~~G~   64 (198)
                      .=..+||-+|.+|||||-.+++  ++.+..        ....+.          +-. .+..+..+.....+++.|||||
T Consensus        12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH   91 (528)
T COG4108          12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH   91 (528)
T ss_pred             hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence            3457899999999999998776  222211        000000          111 1233444555678889999999


Q ss_pred             cCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      ++|....-+.+.-+|.+++|+|+..+-.-+.  ..+.+.++..  ++|++-.+||.|....
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT--~KLfeVcrlR--~iPI~TFiNKlDR~~r  148 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT--LKLFEVCRLR--DIPIFTFINKLDREGR  148 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecccCccHHH--HHHHHHHhhc--CCceEEEeeccccccC
Confidence            9999888888889999999999976544433  3666666655  9999999999998643

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.21  E-value=3.3e-11  Score=95.07  Aligned_cols=161  Identities=26%  Similarity=0.373  Sum_probs=124.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .++|+.|+|..++|||+|+.+++.+.+... ....+..+..++.+++....+.+.|-+|...     ..+-..+|++|||
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~-e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv  102 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQD-ESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV  102 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccc-cCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence            468999999999999999999999988665 4556778888888888888899999888432     2345668999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |.+.+..+++.+ ..+...+..+.  ..+|+++++++.-...        ...+.+...+..+++.++....||++++.+
T Consensus       103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~--------~~~rv~~da~~r~l~~~~krcsy~et~aty  173 (749)
T KOG0705|consen  103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISA--------KRPRVITDDRARQLSAQMKRCSYYETCATY  173 (749)
T ss_pred             EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhc--------ccccccchHHHHHHHHhcCccceeecchhh
Confidence            999999999888 66655555443  4788888887654432        122335666666666666545799999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029144          163 QQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (198)
                      |.++...|..++.+....
T Consensus       174 Glnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  174 GLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             hhhHHHHHHHHHHHHHHH
Confidence            999999999999877655

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.18  E-value=2.5e-10  Score=90.05  Aligned_cols=123  Identities=18%  Similarity=0.182  Sum_probs=80.0

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhh----------HHHHHHHHHHHHhhhC-CCCCEEEEeecCCc
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS----------YENVAKKWIPELRHYA-PGVPIILVGTKLDL  122 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl  122 (198)
                      ..+.++|.+|+...+..|.+++.+++++|||+++++.+.          +.+....|-..+.... .+.|+++++||.|+
T Consensus       236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~  315 (389)
T PF00503_consen  236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL  315 (389)
T ss_dssp             EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred             cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence            456799999999999999999999999999999865332          3333334444444333 68999999999998


Q ss_pred             cccccccc--------CCCCCccccHHHHHHHHHH--------cC--C-CEEEEeccCCCCCHHHHHHHHHHH
Q 029144          123 RDDKQFLA--------DHPGAVPITTAQGEELRKL--------IG--A-PVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       123 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--------~~--~-~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      ........        +..+...-..+.+..+...        ..  . ..++.++|.+..+++.+|+.+.+.
T Consensus       316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            76432111        1111111233444443332        11  1 134569999999999999988765

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.17  E-value=3.2e-10  Score=86.40  Aligned_cols=105  Identities=18%  Similarity=0.142  Sum_probs=63.8

Q ss_pred             EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCC
Q 029144           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADH  132 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~  132 (198)
                      .+.+.|.||+|.....   ......+|.++++.+....+.+...    ...+.    +.|.++|+||+|+.....     
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~el~~~----~~~l~----~~~~ivv~NK~Dl~~~~~-----  189 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGDDLQGI----KAGLM----EIADIYVVNKADGEGATN-----  189 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccHHHHHH----HHHHh----hhccEEEEEcccccchhH-----
Confidence            4677899999853211   1245667888888654433333322    22222    578899999999975421     


Q ss_pred             CCCccccH--HH----HHHHHHH-cCC-CEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          133 PGAVPITT--AQ----GEELRKL-IGA-PVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       133 ~~~~~~~~--~~----~~~~~~~-~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                           ...  ..    ...+... .++ ++++.+||+++.|++++++++.+...
T Consensus       190 -----~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       190 -----VTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             -----HHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence                 100  00    0111111 122 25899999999999999999998654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=3.7e-10  Score=84.08  Aligned_cols=168  Identities=18%  Similarity=0.138  Sum_probs=105.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC---CC----------CCCCcccc---c------e--eEEEEEC----CeEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF---PT----------DYVPTVFD---N------F--SANVVVD----GSTVNL   56 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~---~~----------~~~~t~~~---~------~--~~~~~~~----~~~~~l   56 (198)
                      ..++|-++|+..-|||||..++.+--.   .+          .|..+...   .      +  ...+...    .-.-.+
T Consensus         9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V   88 (415)
T COG5257           9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV   88 (415)
T ss_pred             cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence            378999999999999999988864211   00          01111100   0      0  0000000    123457


Q ss_pred             EEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCc
Q 029144           57 GLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV  136 (198)
Q Consensus        57 ~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  136 (198)
                      .|.|.|||+-.....-....-.|++++|++++.+---... .+-+..+.-. .-..++++-||+|+.....        .
T Consensus        89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT-~EHl~AleIi-gik~iiIvQNKIDlV~~E~--------A  158 (415)
T COG5257          89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-REHLMALEII-GIKNIIIVQNKIDLVSRER--------A  158 (415)
T ss_pred             EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCch-HHHHHHHhhh-ccceEEEEecccceecHHH--------H
Confidence            7999999987766655555557999999999764222222 1222222221 1357889999999976432        1


Q ss_pred             cccHHHHHHHHHHc---CCCEEEEeccCCCCCHHHHHHHHHHHHcCCCcc
Q 029144          137 PITTAQGEELRKLI---GAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       137 ~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~  183 (198)
                      ..+++++++|....   +. +++++||..+.|++-+++.|.+.+..+...
T Consensus       159 lE~y~qIk~FvkGt~Ae~a-PIIPiSA~~~~NIDal~e~i~~~IptP~rd  207 (415)
T COG5257         159 LENYEQIKEFVKGTVAENA-PIIPISAQHKANIDALIEAIEKYIPTPERD  207 (415)
T ss_pred             HHHHHHHHHHhcccccCCC-ceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence            13555666666643   44 799999999999999999999988766554

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=5.1e-10  Score=86.61  Aligned_cols=155  Identities=17%  Similarity=0.106  Sum_probs=103.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc---ccceeEEE-EECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV---FDNFSANV-VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~---~~~~~~~~-~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      -|+..|+-.-|||||+..+.+..-..  .+-.   +......+ ..+.....+.|+|.||++++-+.....+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~--l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDR--LPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhccccccc--chhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            47888999999999999888653211  1111   11111111 122333578899999999998888788888999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH--cCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL--IGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~  161 (198)
                      |++++++-..+..  +.+..+... .-...++|+||+|+.++..           ......+....  +...++|.+|+.
T Consensus        80 vV~~deGl~~qtg--EhL~iLdll-gi~~giivltk~D~~d~~r-----------~e~~i~~Il~~l~l~~~~i~~~s~~  145 (447)
T COG3276          80 VVAADEGLMAQTG--EHLLILDLL-GIKNGIIVLTKADRVDEAR-----------IEQKIKQILADLSLANAKIFKTSAK  145 (447)
T ss_pred             EEeCccCcchhhH--HHHHHHHhc-CCCceEEEEeccccccHHH-----------HHHHHHHHHhhcccccccccccccc
Confidence            9999765444433  333444443 1334589999999986431           11122222222  334468999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 029144          162 TQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~  178 (198)
                      +|+||+++.+.|.+...
T Consensus       146 ~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         146 TGRGIEELKNELIDLLE  162 (447)
T ss_pred             cCCCHHHHHHHHHHhhh
Confidence            99999999999999885

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=1.8e-10  Score=92.94  Aligned_cols=117  Identities=21%  Similarity=0.262  Sum_probs=84.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCC---------CCcccccee---------EEEE---ECCeEEEEEEEeC
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY---------VPTVFDNFS---------ANVV---VDGSTVNLGLWDT   61 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~---------~~t~~~~~~---------~~~~---~~~~~~~l~i~D~   61 (198)
                      +.+..+|.++|+-+.|||+|+.-+.....++-.         ..+......         .++.   .+++.+.+++.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            346779999999999999999888765443321         111111111         1111   2467789999999


Q ss_pred             CCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144           62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (198)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  123 (198)
                      |||-.|.......++.+|++++|+|+..+-.+... ..+...++.   +.|+++|+||.|+.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhaiq~---~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAIQN---RLPIVVVINKVDRL  262 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHHhc---cCcEEEEEehhHHH
Confidence            99999999999999999999999999888777654 222223332   79999999999975

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=4.2e-10  Score=93.47  Aligned_cols=118  Identities=19%  Similarity=0.177  Sum_probs=84.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhC--CCCC---CCCC-----ccc------cce---eEEEEECCeEEEEEEEeCCC
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPT---DYVP-----TVF------DNF---SANVVVDGSTVNLGLWDTAG   63 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~---~~~~-----t~~------~~~---~~~~~~~~~~~~l~i~D~~G   63 (198)
                      ..+.-+|.++|+-++|||||..+++..  .+..   ....     +..      -.+   ...+.+.+ .+.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            346679999999999999999988742  2211   1100     000      001   11233443 47788999999


Q ss_pred             ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      |-+|.....+.++-+|++++|+|+..+-..+.. .-|. +...+  +.|.++++||+|....
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~r-qa~~~--~vp~i~fiNKmDR~~a  143 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWR-QADKY--GVPRILFVNKMDRLGA  143 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHH-HHhhc--CCCeEEEEECcccccc
Confidence            999999999999999999999999887665554 3444 44444  7999999999998754

>cd01900 YchF YchF subfamily

Probab=99.11  E-value=1.5e-09  Score=81.04  Aligned_cols=80  Identities=19%  Similarity=0.144  Sum_probs=54.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCccc---
Q 029144            9 CVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYNR---   69 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~~---   69 (198)
                      |.++|.|++|||||++++.+... ..++..++.+.....+.+.+.               ...+.++|+||...-.+   
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            57999999999999999998654 345556665555444444432               23588999999543211   


Q ss_pred             -ccc---cccCCCcEEEEEEECC
Q 029144           70 -LRP---LSYRGADVFLLAFSLI   88 (198)
Q Consensus        70 -~~~---~~~~~~~~~i~v~d~~   88 (198)
                       +..   ..++++|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence             111   2256799999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=1.3e-09  Score=82.83  Aligned_cols=169  Identities=15%  Similarity=0.194  Sum_probs=107.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCC------------------CCCcc-----c-cceeEEEEE----------CC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD------------------YVPTV-----F-DNFSANVVV----------DG   51 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~------------------~~~t~-----~-~~~~~~~~~----------~~   51 (198)
                      .++++++|.-.+|||||+--+..+.....                  ..+..     + +.....+.+          +.
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            67999999999999999976665433210                  00000     0 000111111          12


Q ss_pred             eEEEEEEEeCCCccCcccccccccCC--CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc
Q 029144           52 STVNLGLWDTAGQEDYNRLRPLSYRG--ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL  129 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  129 (198)
                      ....++|+|.+|+..|.....+.+..  .|..++|+++...-.+..  .+-+..+...  ++|++++.+|+|+.+.....
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~  322 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGLK  322 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhHH
Confidence            23557799999999999887777765  688999999877655443  4555666666  89999999999998763310


Q ss_pred             ---------cC-----CCCCccccHHHHHHHHHHc---CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          130 ---------AD-----HPGAVPITTAQGEELRKLI---GAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       130 ---------~~-----~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                               ..     ....+.-+.+++...+++.   +..|+|.+|+.+|+|++- +..+...+..
T Consensus       323 ~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l-l~~fLn~Lsp  388 (591)
T KOG1143|consen  323 KTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL-LRTFLNCLSP  388 (591)
T ss_pred             HHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH-HHHHHhhcCC
Confidence                     11     1222223455665555553   556899999999999874 3444444433

>PRK00098 GTPase RsgA; Reviewed

Probab=99.10  E-value=6.7e-10  Score=84.47  Aligned_cols=87  Identities=20%  Similarity=0.190  Sum_probs=65.9

Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      +.++|.+++|+|+.+++.......+|+..+...  ++|+++|+||+|+.+..           .............+. +
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~--~ip~iIVlNK~DL~~~~-----------~~~~~~~~~~~~~g~-~  143 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEAN--GIKPIIVLNKIDLLDDL-----------EEARELLALYRAIGY-D  143 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEEEEhHHcCCCH-----------HHHHHHHHHHHHCCC-e
Confidence            489999999999998876655557777776654  89999999999996322           112233444556676 7


Q ss_pred             EEEeccCCCCCHHHHHHHHHH
Q 029144          155 YIECSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~  175 (198)
                      ++++||+++.|+++++..+..
T Consensus       144 v~~vSA~~g~gi~~L~~~l~g  164 (298)
T PRK00098        144 VLELSAKEGEGLDELKPLLAG  164 (298)
T ss_pred             EEEEeCCCCccHHHHHhhccC
Confidence            899999999999999987743

>cd01859 MJ1464 MJ1464

Probab=99.07  E-value=4.1e-10  Score=77.74  Aligned_cols=94  Identities=16%  Similarity=0.137  Sum_probs=64.4

Q ss_pred             ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144           68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR  147 (198)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (198)
                      +.+.++.++++|++++|+|++++....+.  .+...+...  +.|+++|+||+|+.+...          .  .....+.
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~~--~~p~iiv~NK~Dl~~~~~----------~--~~~~~~~   66 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLEL--GKKLLIVLNKADLVPKEV----------L--EKWKSIK   66 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHhC--CCcEEEEEEhHHhCCHHH----------H--HHHHHHH
Confidence            34556777889999999999876543321  233333332  789999999999954321          1  1111233


Q ss_pred             HHcCCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          148 KLIGAPVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       148 ~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      ...+. +++.+||+++.|++++++.+.+.+.
T Consensus        67 ~~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          67 ESEGI-PVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             HhCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence            33444 6899999999999999999998775

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=99.06  E-value=6.3e-10  Score=79.33  Aligned_cols=95  Identities=20%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144           67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL  146 (198)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (198)
                      +...+..+++++|++++|+|++++.....      ..+.....+.|+++|+||+|+.+..           ...+....+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~------~~l~~~~~~~~~ilV~NK~Dl~~~~-----------~~~~~~~~~   86 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGSLI------PRLRLFGGNNPVILVGNKIDLLPKD-----------KNLVRIKNW   86 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCccc------hhHHHhcCCCcEEEEEEchhcCCCC-----------CCHHHHHHH
Confidence            56777788999999999999987642211      1122222478999999999996532           222223333


Q ss_pred             H-----HHcC--CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          147 R-----KLIG--APVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       147 ~-----~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      .     ...+  ...++.+||+++.|+++++..+.+.+.
T Consensus        87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            2     2222  225899999999999999999998764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>smart00053 DYNc Dynamin, GTPase

Probab=99.06  E-value=2.1e-09  Score=78.76  Aligned_cols=69  Identities=25%  Similarity=0.179  Sum_probs=46.7

Q ss_pred             EEEEEEeCCCccCc-------------ccccccccCC-CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029144           54 VNLGLWDTAGQEDY-------------NRLRPLSYRG-ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTK  119 (198)
Q Consensus        54 ~~l~i~D~~G~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK  119 (198)
                      ..+.++|+||-...             ..+...++++ .+++++|+|++....-.+. ..+...+...  +.|+++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~~--~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDPQ--GERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHHc--CCcEEEEEEC
Confidence            56789999997421             1233445664 4589999998764443333 3555555555  8999999999


Q ss_pred             CCcccc
Q 029144          120 LDLRDD  125 (198)
Q Consensus       120 ~Dl~~~  125 (198)
                      +|..+.
T Consensus       202 ~D~~~~  207 (240)
T smart00053      202 LDLMDE  207 (240)
T ss_pred             CCCCCc
Confidence            999764

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.05  E-value=1.2e-08  Score=77.96  Aligned_cols=83  Identities=19%  Similarity=0.130  Sum_probs=56.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEEC----------------CeEEEEEEEeCCCccCc-
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD----------------GSTVNLGLWDTAGQEDY-   67 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~----------------~~~~~l~i~D~~G~~~~-   67 (198)
                      .+++.++|.||+|||||++++..... ..+|..++.+.......+.                -....+.|+|.+|.-.- 
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999997764 2566666643332222211                13467889999994322 


Q ss_pred             ---ccccc---cccCCCcEEEEEEECC
Q 029144           68 ---NRLRP---LSYRGADVFLLAFSLI   88 (198)
Q Consensus        68 ---~~~~~---~~~~~~~~~i~v~d~~   88 (198)
                         .-+-.   .-++++|+++.|++..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence               22222   3357899999999875

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.05  E-value=2.1e-09  Score=74.85  Aligned_cols=78  Identities=13%  Similarity=-0.018  Sum_probs=54.0

Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-CCCEEE
Q 029144           80 VFLLAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-GAPVYI  156 (198)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  156 (198)
                      .-|+|+|++.++....          +-.|  -..=++|+||.|+.+.-.          .+.+...+-+++. +..+++
T Consensus       120 ~~v~VidvteGe~~P~----------K~gP~i~~aDllVInK~DLa~~v~----------~dlevm~~da~~~np~~~ii  179 (202)
T COG0378         120 LRVVVIDVTEGEDIPR----------KGGPGIFKADLLVINKTDLAPYVG----------ADLEVMARDAKEVNPEAPII  179 (202)
T ss_pred             eEEEEEECCCCCCCcc----------cCCCceeEeeEEEEehHHhHHHhC----------ccHHHHHHHHHHhCCCCCEE
Confidence            7889999876653221          1011  013378999999988654          5556665555553 334799


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029144          157 ECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      ++|+++|+|+++++.++...+
T Consensus       180 ~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         180 FTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EEeCCCCcCHHHHHHHHHhhc
Confidence            999999999999999987654

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.03  E-value=2.3e-09  Score=80.19  Aligned_cols=57  Identities=9%  Similarity=-0.021  Sum_probs=40.3

Q ss_pred             CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-cCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          110 GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-IGAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       110 ~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      ..+-++|+||+|+.+...          ...+...+..+. ....+++++||++|+|+++++++|.+.
T Consensus       230 ~~ADIVVLNKiDLl~~~~----------~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLN----------FDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccH----------HHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            466799999999975321          233333333333 334479999999999999999999764

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.03  E-value=7.8e-09  Score=78.29  Aligned_cols=88  Identities=17%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             ccccCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144           72 PLSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI  150 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (198)
                      ...+.++|.+++|+|+.++. ++..+ ..|+..+...  ++|+++|+||+|+.++.            ............
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~~--~ip~iIVlNK~DL~~~~------------~~~~~~~~~~~~  137 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEAA--GIEPVIVLTKADLLDDE------------EEELELVEALAL  137 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHHc--CCCEEEEEEHHHCCChH------------HHHHHHHHHHhC
Confidence            33478999999999999887 77766 6677776655  89999999999996531            111223333446


Q ss_pred             CCCEEEEeccCCCCCHHHHHHHHHH
Q 029144          151 GAPVYIECSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~~~~~i~~  175 (198)
                      +. +++.+||+++.|+++++..+..
T Consensus       138 g~-~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         138 GY-PVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             CC-eEEEEECCCCccHHHHHhhhcc
Confidence            66 7899999999999999887764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.02  E-value=3.3e-09  Score=86.63  Aligned_cols=119  Identities=14%  Similarity=0.074  Sum_probs=73.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCC--CCCccccceeEEEEECCeEEEEEEEeCCCccCccc------c----cc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------L----RP   72 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~----~~   72 (198)
                      ..++|+++|.+|+||||++|.+++......  ..+.+..........++  ..+.++||||......      .    ..
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            357899999999999999999998753221  11222222222233455  4577999999654321      0    11


Q ss_pred             cccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccccc
Q 029144           73 LSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDK  126 (198)
Q Consensus        73 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~  126 (198)
                      .++.  .+|++|+|..++........ ..++..+...+.   -..+|||.|+.|..+++
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD-~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppd  252 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSND-LPLLRTITDVLGPSIWFNAIVTLTHAASAPPD  252 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHH-HHHHHHHHHHhCHHhHcCEEEEEeCCccCCCC
Confidence            1222  47999999887533322111 345556655552   45789999999998643

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.02  E-value=7.1e-10  Score=81.02  Aligned_cols=167  Identities=17%  Similarity=0.063  Sum_probs=93.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCC-ccccceeEEEEECCeEEEEEEEeCCCc----------cCcccccc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQ----------EDYNRLRP   72 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~~   72 (198)
                      .+...++++|.+++|||||++-++.......... ..+........--+  -.+.+.|.||-          ..+..+..
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~--~~~~~vDlPG~~~a~y~~~~~~d~~~~t~  211 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG--KSWYEVDLPGYGRAGYGFELPADWDKFTK  211 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc--ceEEEEecCCcccccCCccCcchHhHhHH
Confidence            4568999999999999999998886543222222 22222211111112  34559999992          12223333


Q ss_pred             cccCCCc---EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCc-cccHHHHHHHHH
Q 029144           73 LSYRGAD---VFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV-PITTAQGEELRK  148 (198)
Q Consensus        73 ~~~~~~~---~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~  148 (198)
                      .++.+.+   -+++.+|++-+-.-.+  ...++.+.+.  +.|+.+|.||||.........+..... .......-+...
T Consensus       212 ~Y~leR~nLv~~FLLvd~sv~i~~~D--~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f  287 (320)
T KOG2486|consen  212 SYLLERENLVRVFLLVDASVPIQPTD--NPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF  287 (320)
T ss_pred             HHHHhhhhhheeeeeeeccCCCCCCC--hHHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhccccce
Confidence            4443332   4556667654432222  2444566666  899999999999876533211111111 011111111111


Q ss_pred             HcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          149 LIGAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       149 ~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      ... ++++.+|+.++.|+++++-.+.+..
T Consensus       288 ~~~-~Pw~~~Ssvt~~Grd~Ll~~i~q~~  315 (320)
T KOG2486|consen  288 LVD-LPWIYVSSVTSLGRDLLLLHIAQLR  315 (320)
T ss_pred             ecc-CCceeeecccccCceeeeeehhhhh
Confidence            122 2567799999999999998887653

>PRK12289 GTPase RsgA; Reviewed

Probab=99.01  E-value=3.2e-09  Score=82.11  Aligned_cols=94  Identities=19%  Similarity=0.187  Sum_probs=67.7

Q ss_pred             cccccccccCCCcEEEEEEECCChhh-HHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH
Q 029144           67 YNRLRPLSYRGADVFLLAFSLISKAS-YENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE  145 (198)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (198)
                      -..+....+.++|.+++|+|+.++.. ...+ ..|+......  ++|+++|+||+|+.+...            ......
T Consensus        79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~~--~ip~ILVlNK~DLv~~~~------------~~~~~~  143 (352)
T PRK12289         79 KTELDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAEST--GLEIVLCLNKADLVSPTE------------QQQWQD  143 (352)
T ss_pred             ccceechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHHC--CCCEEEEEEchhcCChHH------------HHHHHH
Confidence            34455566889999999999988763 3344 6666655443  899999999999964321            122223


Q ss_pred             HHHHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          146 LRKLIGAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      .....+. .++.+||.++.|+++++..+...
T Consensus       144 ~~~~~g~-~v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        144 RLQQWGY-QPLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             HHHhcCC-eEEEEEcCCCCCHHHHhhhhccc
Confidence            3345677 68999999999999999888653

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=5.9e-09  Score=76.93  Aligned_cols=166  Identities=19%  Similarity=0.221  Sum_probs=100.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC---CC---CCCC-----CCcc---ccce---eEEEEECCeEEEEEEEeCCCccCc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN---TF---PTDY-----VPTV---FDNF---SANVVVDGSTVNLGLWDTAGQEDY   67 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~---~~---~~~~-----~~t~---~~~~---~~~~~~~~~~~~l~i~D~~G~~~~   67 (198)
                      ..++|..+|+-+-|||||..++..-   ..   ...|     .|..   +-.+   ...+...+..  +...|+||+.+|
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rh--yahVDcPGHaDY   88 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRH--YAHVDCPGHADY   88 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCce--EEeccCCChHHH
Confidence            4689999999999999999666421   10   0000     1111   1111   1223334444  459999999998


Q ss_pred             ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeecCCcccccccccCCCCCccccHHHHHHH
Q 029144           68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL  146 (198)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  146 (198)
                      -........+.|+.|+|+++.+..--+.. +..  .+.+.. +.|. ++++||+|+.++..       ...+-..+.+++
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTr-EHi--Llarqv-Gvp~ivvflnK~Dmvdd~e-------llelVemEvreL  157 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTR-EHI--LLARQV-GVPYIVVFLNKVDMVDDEE-------LLELVEMEVREL  157 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcch-hhh--hhhhhc-CCcEEEEEEecccccCcHH-------HHHHHHHHHHHH
Confidence            87766677789999999999986544333 111  112221 5554 56779999987532       112344567788


Q ss_pred             HHHcCCC----EEEEeccCC-CC-------CHHHHHHHHHHHHcCCCcc
Q 029144          147 RKLIGAP----VYIECSSKT-QQ-------NVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       147 ~~~~~~~----~~~~~Sa~~-~~-------~i~~~~~~i~~~~~~~~~~  183 (198)
                      ...++++    |++.-||+. .+       .|.++++.+-..+..+.+.
T Consensus       158 Ls~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~  206 (394)
T COG0050         158 LSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD  206 (394)
T ss_pred             HHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence            8888774    466666664 22       3566666666666555443

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.94  E-value=1.3e-08  Score=75.50  Aligned_cols=105  Identities=17%  Similarity=0.142  Sum_probs=65.7

Q ss_pred             EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCC
Q 029144           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADH  132 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~  132 (198)
                      .+.+.|++|.|.-.....   ...-+|.+++|.-..-++..+.+ +.=+-       .+.=++|+||.|......     
T Consensus       143 G~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~i-K~Gim-------EiaDi~vINKaD~~~A~~-----  206 (323)
T COG1703         143 GYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGI-KAGIM-------EIADIIVINKADRKGAEK-----  206 (323)
T ss_pred             CCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHH-Hhhhh-------hhhheeeEeccChhhHHH-----
Confidence            355678888885332221   23447999998877777766665 32222       233478899999765421     


Q ss_pred             CCCccccHHHHH---HHH----HHcCC-CEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          133 PGAVPITTAQGE---ELR----KLIGA-PVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       133 ~~~~~~~~~~~~---~~~----~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                            ...+..   .+.    ...++ ++++.+||..|+|++++++.+.+....
T Consensus       207 ------a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~  255 (323)
T COG1703         207 ------AARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF  255 (323)
T ss_pred             ------HHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence                  111111   111    11122 468999999999999999999987643

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.92  E-value=2.7e-09  Score=81.35  Aligned_cols=172  Identities=17%  Similarity=0.149  Sum_probs=101.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc--------------ccce---------eEEEEE-----------
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV--------------FDNF---------SANVVV-----------   49 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~--------------~~~~---------~~~~~~-----------   49 (198)
                      +..+.|.+.|+-+.|||||+-.+..+...+..-.+-              ...+         .+.+..           
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            456789999999999999997776554432110000              0000         000111           


Q ss_pred             --CCeEEEEEEEeCCCccCcccccccc--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           50 --DGSTVNLGLWDTAGQEDYNRLRPLS--YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        50 --~~~~~~l~i~D~~G~~~~~~~~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                        ....-.+.|.|+.|++.|.+.....  -.+.|..++++.+++..+...  ++-+......  ..|++++.+|+|+.++
T Consensus       195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~a~--~lPviVvvTK~D~~~d  270 (527)
T COG5258         195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIALAM--ELPVIVVVTKIDMVPD  270 (527)
T ss_pred             hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhhhh--cCCEEEEEEecccCcH
Confidence              1122456799999999997655443  367999999999998766543  3444444444  8999999999999876


Q ss_pred             cccc---------cCCCC--Cccc-cHHHH--HHHHHH--cCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          126 KQFL---------ADHPG--AVPI-TTAQG--EELRKL--IGAPVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       126 ~~~~---------~~~~~--~~~~-~~~~~--~~~~~~--~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ....         .+.-+  ...+ +.+..  ...+.+  .+..|+|.+|+.+|+|++ ++..+...+...
T Consensus       271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~r  340 (527)
T COG5258         271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKR  340 (527)
T ss_pred             HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcc
Confidence            4411         00000  0000 11111  111222  234589999999999987 444444444443

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.91  E-value=2.2e-08  Score=76.12  Aligned_cols=117  Identities=21%  Similarity=0.233  Sum_probs=71.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCC----------CCccc-cceeEEEEECCeEEEEEEEeCCCccCcc---cc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYN---RL   70 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~----------~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~---~~   70 (198)
                      ..+.|+++|+.|.|||||+|.|++.......          .++.. ......+.-++....+++.||||-..+-   ..
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            4689999999999999999999987443321          11111 1112223346778999999999922210   00


Q ss_pred             c----------------------cc-cc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           71 R----------------------PL-SY--RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        71 ~----------------------~~-~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      |                      +. .+  ..+|+++|.+..+. .++..+.-+.+..+..   .+.+|=|+.|+|..-.
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~---~vNlIPVI~KaD~lT~  177 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK---RVNLIPVIAKADTLTD  177 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc---ccCeeeeeeccccCCH
Confidence            0                      11 11  13678888887643 3344443344455554   4677777789998654

>PRK12288 GTPase RsgA; Reviewed

Probab=98.91  E-value=1.4e-08  Score=78.58  Aligned_cols=89  Identities=17%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      ..|+|.+++|++.+...++..+ ..|+......  ++|.++|+||+|+.+...         ..............+. +
T Consensus       118 aANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~~--~i~~VIVlNK~DL~~~~~---------~~~~~~~~~~y~~~g~-~  184 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNII-DRYLVACETL--GIEPLIVLNKIDLLDDEG---------RAFVNEQLDIYRNIGY-R  184 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHH-HHHHHHHHhc--CCCEEEEEECccCCCcHH---------HHHHHHHHHHHHhCCC-e
Confidence            4679999999999887788777 7787666544  799999999999965321         0111222333445676 7


Q ss_pred             EEEeccCCCCCHHHHHHHHHHH
Q 029144          155 YIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      ++++||+++.|+++++..+...
T Consensus       185 v~~vSA~tg~GideL~~~L~~k  206 (347)
T PRK12288        185 VLMVSSHTGEGLEELEAALTGR  206 (347)
T ss_pred             EEEEeCCCCcCHHHHHHHHhhC
Confidence            9999999999999999988764

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.90  E-value=2.3e-09  Score=78.18  Aligned_cols=103  Identities=17%  Similarity=0.150  Sum_probs=60.9

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP  133 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  133 (198)
                      +.+.|++|.|.-....   ....-+|.+++|....-.+..+.+ +.-+-.       ++=++|+||+|......      
T Consensus       122 ~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~-KaGimE-------iaDi~vVNKaD~~gA~~------  184 (266)
T PF03308_consen  122 FDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAI-KAGIME-------IADIFVVNKADRPGADR------  184 (266)
T ss_dssp             -SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB--TTHHH-------H-SEEEEE--SHHHHHH------
T ss_pred             CCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHH-hhhhhh-------hccEEEEeCCChHHHHH------
Confidence            5566888887432211   123458999999988776665544 221112       23488899999765432      


Q ss_pred             CCccccHHHHHHHHHHc-----C-CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          134 GAVPITTAQGEELRKLI-----G-APVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       134 ~~~~~~~~~~~~~~~~~-----~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                           ...+.+......     + .++++.+||.++.|++++++.|.+...
T Consensus       185 -----~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  185 -----TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             -----HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence                 222333222211     1 257999999999999999999988553

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01858 NGP_1 NGP-1

Probab=98.87  E-value=1.5e-08  Score=70.08  Aligned_cols=90  Identities=16%  Similarity=0.060  Sum_probs=59.4

Q ss_pred             ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144           74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                      .+.++|++++|+|+.++.....  ..+...+.....+.|+++|+||+|+.++..           .......+...+.. 
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-----------~~~~~~~~~~~~~~-   70 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-----------TARWVKILSKEYPT-   70 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-----------HHHHHHHHhcCCcE-
Confidence            4678999999999998743221  233344443334689999999999964321           11222233322322 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHH
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      ..+.+||+++.|++++++.+.+.+
T Consensus        71 ~~~~iSa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          71 IAFHASINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             EEEEeeccccccHHHHHHHHHHHH
Confidence            357799999999999999998764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.86  E-value=7.7e-09  Score=80.68  Aligned_cols=96  Identities=22%  Similarity=0.363  Sum_probs=68.3

Q ss_pred             ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHH
Q 029144           64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG  143 (198)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  143 (198)
                      .+.|..+...+.+.++++++|+|+.+...      .|...+.....+.|+++|+||+|+.+..           ...+..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~-----------~~~~~~  112 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKS-----------VNLSKI  112 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCC-----------CCHHHH
Confidence            44677777777889999999999976542      2333333333478999999999997532           223333


Q ss_pred             H----HHHHHcCCC--EEEEeccCCCCCHHHHHHHHHHH
Q 029144          144 E----ELRKLIGAP--VYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       144 ~----~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      .    +++...+..  .++.+||+++.|+++++..+.+.
T Consensus       113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            3    345556652  48899999999999999999764

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.82  E-value=1.4e-08  Score=68.85  Aligned_cols=54  Identities=15%  Similarity=0.134  Sum_probs=35.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (198)
                      +++++|.+|+|||||+|++....................+.+++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            79999999999999999999876532111111122223344443   3579999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=1.4e-07  Score=72.27  Aligned_cols=116  Identities=19%  Similarity=0.251  Sum_probs=70.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCC--C--CCcc------ccceeEEEEECCeEEEEEEEeCCCccCc--------
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD--Y--VPTV------FDNFSANVVVDGSTVNLGLWDTAGQEDY--------   67 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~--~--~~t~------~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------   67 (198)
                      .|.++++|++|.|||||+|.|+...+..+  +  .+..      .......+.-++..+.|++.||||-.+.        
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            58999999999999999999987644332  0  0000      1111222333678899999999992211        


Q ss_pred             -----------------ccccccccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           68 -----------------NRLRPLSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        68 -----------------~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                                       ....+..+.  .+++++|.+..+. ..+..+.-.+...+..   .+++|-|+-|.|....
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~~---~vNiIPVI~KaD~lT~  173 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLSK---KVNLIPVIAKADTLTK  173 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHhc---cccccceeeccccCCH
Confidence                             011111222  4678888888653 2333332344444444   4677777789998654

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.81  E-value=2e-08  Score=76.39  Aligned_cols=117  Identities=23%  Similarity=0.207  Sum_probs=75.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCC---CCCccccceeEEEE-------------EC--------------------
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTD---YVPTVFDNFSANVV-------------VD--------------------   50 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~---~~~t~~~~~~~~~~-------------~~--------------------   50 (198)
                      --|+++|.-..||||+++-++.+.++.-   ..||+. .|...+.             ++                    
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd-~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~  137 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD-RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM  137 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc-eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence            4689999999999999999998877642   223322 1211111             11                    


Q ss_pred             ------CeEEEEEEEeCCCccC-----------cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE
Q 029144           51 ------GSTVNLGLWDTAGQED-----------YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI  113 (198)
Q Consensus        51 ------~~~~~l~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~  113 (198)
                            ...-.+.++||||.-.           |......+...+|.++++||+..-+--.+. .+.+..++.+  .-.+
T Consensus       138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--Edki  214 (532)
T KOG1954|consen  138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKI  214 (532)
T ss_pred             HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--ccee
Confidence                  0123467999999322           223345667789999999998654433333 4555566655  4556


Q ss_pred             EEEeecCCcccccc
Q 029144          114 ILVGTKLDLRDDKQ  127 (198)
Q Consensus       114 iiv~nK~Dl~~~~~  127 (198)
                      -||+||.|..+.++
T Consensus       215 RVVLNKADqVdtqq  228 (532)
T KOG1954|consen  215 RVVLNKADQVDTQQ  228 (532)
T ss_pred             EEEeccccccCHHH
Confidence            67789999987654

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.80  E-value=3.4e-08  Score=75.42  Aligned_cols=166  Identities=17%  Similarity=0.211  Sum_probs=92.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCC------------------CCCCccccce--------------------eEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPT------------------DYVPTVFDNF--------------------SANV   47 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~------------------~~~~t~~~~~--------------------~~~~   47 (198)
                      +++|+++|...+|||||+-.+.++....                  ...+..+..+                    ....
T Consensus       133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk  212 (641)
T KOG0463|consen  133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK  212 (641)
T ss_pred             eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence            6799999999999999996555443321                  0011111111                    1111


Q ss_pred             EECCeEEEEEEEeCCCccCccccccccc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           48 VVDGSTVNLGLWDTAGQEDYNRLRPLSY--RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        48 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      ...+....++|+|.+|++.|....-...  +-.|..++++-++-.-  ..+.++.+...-..  ..|+.+|.+|+|..+.
T Consensus       213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI--iGmTKEHLgLALaL--~VPVfvVVTKIDMCPA  288 (641)
T KOG0463|consen  213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI--IGMTKEHLGLALAL--HVPVFVVVTKIDMCPA  288 (641)
T ss_pred             eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc--eeccHHhhhhhhhh--cCcEEEEEEeeccCcH
Confidence            1123345678999999999987654433  3478888888765321  11213333332333  7999999999999886


Q ss_pred             ccc---------ccCCCCCcccc-----HHH----HHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          126 KQF---------LADHPGAVPIT-----TAQ----GEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       126 ~~~---------~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      +..         ..++...+.++     .++    +..|..+.- +++|.+|-.+|.|++ ++..+...+
T Consensus       289 NiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~-CPIFQvSNVtG~NL~-LLkmFLNll  356 (641)
T KOG0463|consen  289 NILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERV-CPIFQVSNVTGTNLP-LLKMFLNLL  356 (641)
T ss_pred             HHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccc-cceEEeccccCCChH-HHHHHHhhc
Confidence            430         01121111111     111    112222222 378999999999986 344444443

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.79  E-value=5.2e-08  Score=70.81  Aligned_cols=151  Identities=18%  Similarity=0.196  Sum_probs=97.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc-------cccccccCCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-------RLRPLSYRGA   78 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~~~~~~~~   78 (198)
                      -+|-++|.|.+||||++..+..... ...|..|+-..++....+++  ..+++.|.||.-+-.       .......+.|
T Consensus        60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc  137 (358)
T KOG1487|consen   60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC  137 (358)
T ss_pred             eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence            3789999999999999988876532 34455666555565555666  667799999953322       1222345678


Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhh---------------------------------------------------
Q 029144           79 DVFLLAFSLISKASYENVAKKWIPELRHY---------------------------------------------------  107 (198)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------------------------------------------------  107 (198)
                      +.+++|+|+..|-+...+.+.-++-+...                                                   
T Consensus       138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT  217 (358)
T KOG1487|consen  138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT  217 (358)
T ss_pred             cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence            99999999877644443322111111100                                                   


Q ss_pred             -----------CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          108 -----------APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       108 -----------~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                                 ..-+|.+.+.||+|...               .++   +--.+..+..+.+||..+.|+++++..+-+.
T Consensus       218 ~DdLIdvVegnr~yVp~iyvLNkIdsIS---------------iEE---Ldii~~iphavpISA~~~wn~d~lL~~mwey  279 (358)
T KOG1487|consen  218 ADDLIDVVEGNRIYVPCIYVLNKIDSIS---------------IEE---LDIIYTIPHAVPISAHTGWNFDKLLEKMWEY  279 (358)
T ss_pred             hhhhhhhhccCceeeeeeeeecccceee---------------eec---cceeeeccceeecccccccchHHHHHHHhhc
Confidence                       01247777778887743               222   1223344567889999999999999988876


Q ss_pred             H
Q 029144          177 V  177 (198)
Q Consensus       177 ~  177 (198)
                      +
T Consensus       280 L  280 (358)
T KOG1487|consen  280 L  280 (358)
T ss_pred             c
Confidence            5

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.78  E-value=7.6e-08  Score=69.22  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=68.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCC---------CCCCccc-cceeEEEEECCeEEEEEEEeCCCccCc---c---
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT---------DYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDY---N---   68 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~---------~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~---~---   68 (198)
                      -.|+|+|+|.+|.|||||++.++......         ++..|+. ......+.-++...+++++||||-.++   .   
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            46899999999999999999887543322         1122221 112333444678899999999992221   1   


Q ss_pred             --------------------cccccccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144           69 --------------------RLRPLSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (198)
Q Consensus        69 --------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  123 (198)
                                          ..+...+.  .++++++.+..+ +.++..+.-+++..+...   ..++-|+-|.|-.
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~v---vNvvPVIakaDtl  197 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTEV---VNVVPVIAKADTL  197 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhhh---heeeeeEeecccc
Confidence                                11122232  256777777654 444544434555555543   5566666788873

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.76  E-value=3.8e-08  Score=67.84  Aligned_cols=83  Identities=19%  Similarity=0.106  Sum_probs=54.9

Q ss_pred             cEEEEEEECCChhhHHHHHHHHH-HHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144           79 DVFLLAFSLISKASYENVAKKWI-PELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE  157 (198)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (198)
                      |++++|+|+.++.+....  .+. ..+..  .+.|+++|+||+|+.+...           .......+....+ ..++.
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~-----------~~~~~~~~~~~~~-~~ii~   64 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEV-----------LRKWLAYLRHSYP-TIPFK   64 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHH-----------HHHHHHHHHhhCC-ceEEE
Confidence            689999999887655432  222 22332  3799999999999954321           1111112222233 36788


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 029144          158 CSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      +||+++.|++++++.+.+..
T Consensus        65 vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          65 ISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             EeccCCcChhhHHHHHHHHh
Confidence            99999999999999987764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.67  E-value=2.1e-08  Score=75.04  Aligned_cols=150  Identities=18%  Similarity=0.170  Sum_probs=88.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccceeEEEEECCeEEEEEEEeCCCcc---------Cccccccccc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPLSY   75 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~~~   75 (198)
                      .--|.++|..|+|||||++++..-.+.. +.-..+.+.........+. -.+.+.||-|--         .|.+.. .-.
T Consensus       178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg-~~vlltDTvGFisdLP~~LvaAF~ATL-eeV  255 (410)
T KOG0410|consen  178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG-NFVLLTDTVGFISDLPIQLVAAFQATL-EEV  255 (410)
T ss_pred             CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC-cEEEEeechhhhhhCcHHHHHHHHHHH-HHH
Confidence            3468999999999999999998544322 1111112222222222222 234488988831         122211 124


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCC----EEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144           76 RGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVP----IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI  150 (198)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p----~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (198)
                      ..+|+++-|.|+++|.--... ...+..+.... +..|    ++=|-||.|..+...            .      ...+
T Consensus       256 aeadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~------------e------~E~n  316 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV------------E------EEKN  316 (410)
T ss_pred             hhcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccC------------c------cccC
Confidence            578999999999998765554 44455555442 2233    344557777754321            1      1122


Q ss_pred             CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          151 GAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +   -+.+||++|+|++++++.+-.++..
T Consensus       317 ~---~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  317 L---DVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             C---ccccccccCccHHHHHHHHHHHhhh
Confidence            2   3568999999999999888776543

>cd01856 YlqF YlqF

Probab=98.66  E-value=1e-07  Score=66.84  Aligned_cols=88  Identities=23%  Similarity=0.143  Sum_probs=59.5

Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      ...+.++|++++|+|++++......  .+...+    .+.|+++|+||+|+.+...            .....++....+
T Consensus        14 ~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~~------------~~~~~~~~~~~~   75 (171)
T cd01856          14 KEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPKK------------TKKWLKYFESKG   75 (171)
T ss_pred             HHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChHH------------HHHHHHHHHhcC
Confidence            4567889999999999876543222  222222    3679999999999964321            111212222333


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      . .++.+||+++.|++++...+.+.+.
T Consensus        76 ~-~vi~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          76 E-KVLFVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             C-eEEEEECCCcccHHHHHHHHHHHHH
Confidence            3 6789999999999999999988763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01858 NGP_1 NGP-1

Probab=98.65  E-value=9.5e-08  Score=65.99  Aligned_cols=54  Identities=17%  Similarity=0.127  Sum_probs=34.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAG   63 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G   63 (198)
                      +.++|+++|.+|+|||||+|++.+....  .....++..  ...+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC---CEEEEECcC
Confidence            4678999999999999999999875432  222222221  11112222   255999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.65  E-value=9.6e-08  Score=66.85  Aligned_cols=55  Identities=22%  Similarity=0.178  Sum_probs=36.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (198)
                      ..++++++|.+|+|||||+|++.+....  ....+++..  ...+.++.   .+.++||||.
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~--~~~~~~~~---~~~l~DtPGi  172 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS--MQEVHLDK---KVKLLDSPGI  172 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc--eEEEEeCC---CEEEEECcCC
Confidence            3579999999999999999999976432  222222221  11222322   4669999983

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.63  E-value=1.3e-07  Score=64.16  Aligned_cols=77  Identities=16%  Similarity=0.108  Sum_probs=51.1

Q ss_pred             ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144           74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                      .+..+|++++|+|+.++.+...  ..+...+.....+.|+++|+||+|+.++.            ............+. 
T Consensus         8 ~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~~~~~~~~~~~~~~-   72 (141)
T cd01857           8 VVERSDIVVQIVDARNPLLFRP--PDLERYVKEVDPRKKNILLLNKADLLTEE------------QRKAWAEYFKKEGI-   72 (141)
T ss_pred             HHhhCCEEEEEEEccCCcccCC--HHHHHHHHhccCCCcEEEEEechhcCCHH------------HHHHHHHHHHhcCC-
Confidence            4678999999999988766442  12333333222578999999999996432            12233444555555 


Q ss_pred             EEEEeccCCCCC
Q 029144          154 VYIECSSKTQQN  165 (198)
Q Consensus       154 ~~~~~Sa~~~~~  165 (198)
                      .++.+||.++.+
T Consensus        73 ~ii~iSa~~~~~   84 (141)
T cd01857          73 VVVFFSALKENA   84 (141)
T ss_pred             eEEEEEecCCCc
Confidence            688999998753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=7.9e-07  Score=72.61  Aligned_cols=119  Identities=15%  Similarity=0.164  Sum_probs=73.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCC-CCCcccc-----------------------------------------
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFD-----------------------------------------   41 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~-~~~t~~~-----------------------------------------   41 (198)
                      +...||++.|..++||||++|+++...+.+. .-+++..                                         
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            4568999999999999999999987644221 1111100                                         


Q ss_pred             --ceeEEEEECCe-----EEEEEEEeCCCccC---cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC
Q 029144           42 --NFSANVVVDGS-----TVNLGLWDTAGQED---YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGV  111 (198)
Q Consensus        42 --~~~~~~~~~~~-----~~~l~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  111 (198)
                        .....+.++..     .-.+.+.|.||.+.   ..+....+..++|++|+|.++.+-.+..+.  .++......  +.
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--Kp  262 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--KP  262 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--CC
Confidence              00001111111     01356889999643   344445566789999999999887665544  444444444  55


Q ss_pred             CEEEEeecCCccccc
Q 029144          112 PIILVGTKLDLRDDK  126 (198)
Q Consensus       112 p~iiv~nK~Dl~~~~  126 (198)
                      .++|+.||.|...+.
T Consensus       263 niFIlnnkwDasase  277 (749)
T KOG0448|consen  263 NIFILNNKWDASASE  277 (749)
T ss_pred             cEEEEechhhhhccc
Confidence            666777899997654

>cd01856 YlqF YlqF

Probab=98.60  E-value=1.5e-07  Score=65.93  Aligned_cols=56  Identities=20%  Similarity=0.143  Sum_probs=36.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ   64 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~   64 (198)
                      ..++++++|.+|+|||||++++....+... .+..+... ...+.++   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            457999999999999999999998765321 11111111 2223333   24679999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.57  E-value=3.7e-06  Score=65.62  Aligned_cols=154  Identities=16%  Similarity=0.253  Sum_probs=94.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCC-----------------CCCC----CCCccccce----eEEEEE-CCeEEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNT-----------------FPTD----YVPTVFDNF----SANVVV-DGSTVNLGLW   59 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~-----------------~~~~----~~~t~~~~~----~~~~~~-~~~~~~l~i~   59 (198)
                      .+=|.|||+..+|||||++||...-                 .++.    ..-|+...|    ...+.+ ++..+++.+.
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi   96 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI   96 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence            3558899999999999999997421                 1111    122223333    223344 4677899999


Q ss_pred             eCCCc-------------cCccc-cc---------------ccccCC-Cc-EEEEEEECC----ChhhHHHHHHHHHHHH
Q 029144           60 DTAGQ-------------EDYNR-LR---------------PLSYRG-AD-VFLLAFSLI----SKASYENVAKKWIPEL  104 (198)
Q Consensus        60 D~~G~-------------~~~~~-~~---------------~~~~~~-~~-~~i~v~d~~----~~~s~~~~~~~~~~~~  104 (198)
                      |+.|-             +++-. =|               +..++. +. ++++.-|-+    .++.+..+.++....+
T Consensus        97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL  176 (492)
T PF09547_consen   97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL  176 (492)
T ss_pred             eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence            99981             11100 00               111111 22 334433432    2567777778888888


Q ss_pred             hhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC--CCCHHHHHHHHH
Q 029144          105 RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT--QQNVKAVFDAAI  174 (198)
Q Consensus       105 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~i~~~~~~i~  174 (198)
                      ...  ++|+++++|-.+-..+            ...+.+.++..+|+. +++.+++.+  .+.+..++..+.
T Consensus       177 k~i--gKPFvillNs~~P~s~------------et~~L~~eL~ekY~v-pVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  177 KEI--GKPFVILLNSTKPYSE------------ETQELAEELEEKYDV-PVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             HHh--CCCEEEEEeCCCCCCH------------HHHHHHHHHHHHhCC-cEEEeehHHcCHHHHHHHHHHHH
Confidence            888  9999999998866443            455667788888988 677777664  345555554443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.55  E-value=2.7e-07  Score=69.64  Aligned_cols=55  Identities=22%  Similarity=0.279  Sum_probs=36.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCC--CCCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (198)
                      +.++++++|.+|+|||||+|++.+.....  ....++..  ...+.++.   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence            46899999999999999999999765322  22222221  22233332   3579999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01859 MJ1464 MJ1464

Probab=98.55  E-value=3e-07  Score=63.36  Aligned_cols=56  Identities=21%  Similarity=0.157  Sum_probs=36.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG   63 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G   63 (198)
                      ...+++++|.+++||||+++++.+... ..+.++.+......+..-+  ..+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLVKIT--SKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeeeeeEEEEcC--CCEEEEECcC
Confidence            457899999999999999999996543 2233343333222222112  1467999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR00092 GTP-binding protein YchF

Probab=98.54  E-value=5.3e-07  Score=69.89  Aligned_cols=82  Identities=16%  Similarity=0.054  Sum_probs=57.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCccc
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYNR   69 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~~   69 (198)
                      +++.++|.|++|||||++.+.....  ..+|..++.......+.+.+.               ...+.+.|.||...-.+
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999987754  345666655444444444432               24578999999643221


Q ss_pred             -------ccccccCCCcEEEEEEECC
Q 029144           70 -------LRPLSYRGADVFLLAFSLI   88 (198)
Q Consensus        70 -------~~~~~~~~~~~~i~v~d~~   88 (198)
                             ..-..++++|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                   1122467899999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.52  E-value=5.5e-07  Score=67.94  Aligned_cols=89  Identities=21%  Similarity=0.134  Sum_probs=60.9

Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      ...+..+|++++|+|+.++.+....  .+...+    .+.|+++|+||+|+.+..           .. ....+.....+
T Consensus        16 ~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~-----------~~-~~~~~~~~~~~   77 (276)
T TIGR03596        16 KEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPA-----------VT-KQWLKYFEEKG   77 (276)
T ss_pred             HHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHH-----------HH-HHHHHHHHHcC
Confidence            4567889999999999877554332  222222    268999999999995432           11 11122223334


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      . .++.+||+++.|++++.+.+.+.+..
T Consensus        78 ~-~vi~iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        78 I-KALAINAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             C-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence            4 67889999999999999999887744

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.50  E-value=1.4e-06  Score=70.07  Aligned_cols=111  Identities=21%  Similarity=0.195  Sum_probs=75.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .++=++|+|++|+|||||++.+...-..    .|..+.......+.++.-.++|.++|..  ..++. ....-+|++++.
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~tk----~ti~~i~GPiTvvsgK~RRiTflEcp~D--l~~mi-DvaKIaDLVlLl  140 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFTK----QTIDEIRGPITVVSGKTRRITFLECPSD--LHQMI-DVAKIADLVLLL  140 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHHH----hhhhccCCceEEeecceeEEEEEeChHH--HHHHH-hHHHhhheeEEE
Confidence            5778889999999999999888754211    1111111222335677788999999932  22222 233458999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeecCCccccc
Q 029144           85 FSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDDK  126 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~  126 (198)
                      +|.+-+-..+.+  +++..+..+  +.|- +-|+++.|+....
T Consensus       141 IdgnfGfEMETm--EFLnil~~H--GmPrvlgV~ThlDlfk~~  179 (1077)
T COG5192         141 IDGNFGFEMETM--EFLNILISH--GMPRVLGVVTHLDLFKNP  179 (1077)
T ss_pred             eccccCceehHH--HHHHHHhhc--CCCceEEEEeecccccCh
Confidence            999887666665  677777777  6665 4678999997653

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.50  E-value=5.3e-07  Score=68.39  Aligned_cols=55  Identities=20%  Similarity=0.279  Sum_probs=36.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCC--CCCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (198)
                      ..++++++|.+|+|||||+|++.+.....  ....++..  ...+.++.   .+.++||||.
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCc
Confidence            46899999999999999999999865422  22222211  12223332   3569999997

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.48  E-value=6.6e-07  Score=72.19  Aligned_cols=116  Identities=16%  Similarity=0.173  Sum_probs=77.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCC-----CCCC-CCCccccce----eEEEE-------ECCeEEEEEEEeCCCccCcc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNT-----FPTD-YVPTVFDNF----SANVV-------VDGSTVNLGLWDTAGQEDYN   68 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~-----~~~~-~~~t~~~~~----~~~~~-------~~~~~~~l~i~D~~G~~~~~   68 (198)
                      .=+|-+.-+-.+||||+-++.+...     +.+. ...++.+..    .+.++       .....+.++++|||||-.|.
T Consensus        39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT  118 (721)
T KOG0465|consen   39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT  118 (721)
T ss_pred             hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence            3467778888999999998876321     1110 001111111    11111       11235788899999999999


Q ss_pred             cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      -...+.++-.|++++|+++..+-.-+.. .-|. +..++  +.|.+..+||+|....
T Consensus       119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~r-Q~~ry--~vP~i~FiNKmDRmGa  171 (721)
T KOG0465|consen  119 FEVERALRVLDGAVLVLDAVAGVESQTE-TVWR-QMKRY--NVPRICFINKMDRMGA  171 (721)
T ss_pred             EEehhhhhhccCeEEEEEcccceehhhH-HHHH-HHHhc--CCCeEEEEehhhhcCC
Confidence            9999999999999999998776555444 3443 44555  8999999999998754

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=4.8e-07  Score=74.59  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=77.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCcc------ccceeEEEE-------ECCeEEEEEEEeCCCccCc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTV------FDNFSANVV-------VDGSTVNLGLWDTAGQEDY   67 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~------~~~~~~~~~-------~~~~~~~l~i~D~~G~~~~   67 (198)
                      .+..-+|+++-+-.-|||||...++..  .+.....+..      .+...+.++       +--+.+.++++|+|||-+|
T Consensus         6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf   85 (887)
T KOG0467|consen    6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF   85 (887)
T ss_pred             CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence            445668999999999999999888743  2222111111      111111111       2124578889999999999


Q ss_pred             ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           68 NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      .+......+-+|++++.+|+..+-.-+..  .++.+...  .+...++|+||+|.
T Consensus        86 ~sevssas~l~d~alvlvdvvegv~~qt~--~vlrq~~~--~~~~~~lvinkidr  136 (887)
T KOG0467|consen   86 SSEVSSASRLSDGALVLVDVVEGVCSQTY--AVLRQAWI--EGLKPILVINKIDR  136 (887)
T ss_pred             hhhhhhhhhhcCCcEEEEeeccccchhHH--HHHHHHHH--ccCceEEEEehhhh
Confidence            99999999999999999999765444333  22222222  26778899999994

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=1.6e-06  Score=65.61  Aligned_cols=147  Identities=19%  Similarity=0.162  Sum_probs=88.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh---C-C------CCC-CCCCcc---ccce-eEEEEECCeEEEEEEEeCCCccCccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS---N-T------FPT-DYVPTV---FDNF-SANVVVDGSTVNLGLWDTAGQEDYNR   69 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~---~-~------~~~-~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~   69 (198)
                      ..++|--+|+..-|||||--++..   . .      +.+ +..|..   +-.+ ...+.+....-...=.|+|||.+|-.
T Consensus        53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK  132 (449)
T KOG0460|consen   53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK  132 (449)
T ss_pred             CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence            457899999999999999866542   1 1      100 000111   1111 12223322223334789999999987


Q ss_pred             ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144           70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL  149 (198)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (198)
                      .......+.|+.|+|+.++|..--+.- +.+  .+.+...-..+++.+||.|+.++.+       ...+..-+.+++...
T Consensus       133 NMItGaaqMDGaILVVaatDG~MPQTr-EHl--LLArQVGV~~ivvfiNKvD~V~d~e-------~leLVEmE~RElLse  202 (449)
T KOG0460|consen  133 NMITGAAQMDGAILVVAATDGPMPQTR-EHL--LLARQVGVKHIVVFINKVDLVDDPE-------MLELVEMEIRELLSE  202 (449)
T ss_pred             HhhcCccccCceEEEEEcCCCCCcchH-HHH--HHHHHcCCceEEEEEecccccCCHH-------HHHHHHHHHHHHHHH
Confidence            777777889999999999997544332 222  2222223456788889999986532       222344456777777


Q ss_pred             cCCC----EEEEeccC
Q 029144          150 IGAP----VYIECSSK  161 (198)
Q Consensus       150 ~~~~----~~~~~Sa~  161 (198)
                      +++.    |++.-||+
T Consensus       203 ~gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  203 FGFDGDNTPVIRGSAL  218 (449)
T ss_pred             cCCCCCCCCeeecchh
Confidence            7653    56665544

>PRK13796 GTPase YqeH; Provisional

Probab=98.45  E-value=1.5e-06  Score=68.02  Aligned_cols=84  Identities=20%  Similarity=0.374  Sum_probs=57.4

Q ss_pred             CCCc-EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHH----HHHHHHc
Q 029144           76 RGAD-VFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG----EELRKLI  150 (198)
Q Consensus        76 ~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  150 (198)
                      ...+ .+++|+|+.+..      ..|...+.....+.|+++|+||+|+.+..           ...+..    ..++...
T Consensus        67 ~~~~~lIv~VVD~~D~~------~s~~~~L~~~~~~kpviLViNK~DLl~~~-----------~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         67 GDSDALVVNVVDIFDFN------GSWIPGLHRFVGNNPVLLVGNKADLLPKS-----------VKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             cccCcEEEEEEECccCC------CchhHHHHHHhCCCCEEEEEEchhhCCCc-----------cCHHHHHHHHHHHHHhc
Confidence            3444 899999997743      22333444444478999999999996532           222333    3334455


Q ss_pred             CCC--EEEEeccCCCCCHHHHHHHHHHH
Q 029144          151 GAP--VYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       151 ~~~--~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      +..  .++.+||+++.|++++++.+.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            542  47899999999999999999775

>PRK01889 GTPase RsgA; Reviewed

Probab=98.42  E-value=1.9e-06  Score=67.28  Aligned_cols=84  Identities=18%  Similarity=0.201  Sum_probs=59.3

Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      ..|+|.+++|+++..+-....+ ..++..+...  ++|.++|+||+||.++..          ...+....+  ..+. +
T Consensus       110 aANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~~----------~~~~~~~~~--~~g~-~  173 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDAE----------EKIAEVEAL--APGV-P  173 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCHH----------HHHHHHHHh--CCCC-c
Confidence            5789999999999644444344 6777777666  888899999999965311          011122222  3354 6


Q ss_pred             EEEeccCCCCCHHHHHHHHH
Q 029144          155 YIECSSKTQQNVKAVFDAAI  174 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~  174 (198)
                      ++.+|++++.|++++..++.
T Consensus       174 Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        174 VLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             EEEEECCCCccHHHHHHHhh
Confidence            88999999999999988874

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.42  E-value=9.3e-07  Score=67.08  Aligned_cols=89  Identities=24%  Similarity=0.187  Sum_probs=60.8

Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      ...+..+|++++|+|+.++.+....  .+...+    .+.|+++|+||+|+.+..           . .+....+....+
T Consensus        19 ~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~----~~kp~iiVlNK~DL~~~~-----------~-~~~~~~~~~~~~   80 (287)
T PRK09563         19 KENLKLVDVVIEVLDARIPLSSENP--MIDKII----GNKPRLLILNKSDLADPE-----------V-TKKWIEYFEEQG   80 (287)
T ss_pred             HHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh----CCCCEEEEEEchhcCCHH-----------H-HHHHHHHHHHcC
Confidence            4567889999999999877554322  222222    268999999999995421           1 112222223334


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      . +++.+||.++.|++++++.+.+.+..
T Consensus        81 ~-~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         81 I-KALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             C-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence            4 67889999999999999998887643

>cd01855 YqeH YqeH

Probab=98.42  E-value=5e-07  Score=64.38  Aligned_cols=25  Identities=20%  Similarity=0.211  Sum_probs=22.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      ...++++|.+|+|||||+|++....
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~  151 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKD  151 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhc
Confidence            3589999999999999999999754

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.42  E-value=2.3e-07  Score=66.51  Aligned_cols=126  Identities=17%  Similarity=0.228  Sum_probs=76.8

Q ss_pred             eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhh----------HHHHHHHHHHHHhhh--CCCCCEEEEeec
Q 029144           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS----------YENVAKKWIPELRHY--APGVPIILVGTK  119 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~--~~~~p~iiv~nK  119 (198)
                      ..+.+.+.|.+|+..-+..|.+.+.+...+++.+..+..+.          .++. ..+...+-.+  +.+.++|+.+||
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFLNK  275 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNK  275 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEech
Confidence            34667789999998888889999988887777766543221          2222 2222222222  258999999999


Q ss_pred             CCcccccccc-------cCCCCCccccHHHHHHHHHHc----CC--CE---EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          120 LDLRDDKQFL-------ADHPGAVPITTAQGEELRKLI----GA--PV---YIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       120 ~Dl~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~~--~~---~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      -|+.++....       +...+.. .+..-+++|..+.    +-  ..   -..++|.+.+||.-+|..+-+.+..
T Consensus       276 kDlLEekI~ySHl~~YFPe~~GP~-qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq  350 (359)
T KOG0085|consen  276 KDLLEEKILYSHLADYFPEFDGPK-QDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  350 (359)
T ss_pred             hhhhhhhhhHHHHHHhCcccCCCc-ccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence            9998764311       1111111 2333344444332    11  01   1248888999999999888776654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.40  E-value=1.3e-06  Score=60.18  Aligned_cols=54  Identities=22%  Similarity=0.241  Sum_probs=35.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG   63 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G   63 (198)
                      ...+++++|.+|+|||||+|.+.....  ......++.....  ...+   ..+.++||||
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG  154 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG  154 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence            467899999999999999999997643  2222233322221  2222   2366999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.39  E-value=3.3e-07  Score=62.94  Aligned_cols=59  Identities=14%  Similarity=0.128  Sum_probs=32.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCC-------CCCccccceeEEEEECCeEEEEEEEeCCCccCcc
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTD-------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (198)
                      --++++|++|||||||+|.+........       ............+.+++.   ..++||||-..+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~  101 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG  101 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence            3589999999999999999997632111       011111122233334332   2489999975543

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.38  E-value=9.3e-07  Score=68.01  Aligned_cols=56  Identities=21%  Similarity=0.196  Sum_probs=36.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ   64 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~   64 (198)
                      +.++++++|.|++|||||||++.+...... .+..+..- ...+.++..   +.++||||.
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCCC---eEEecCCCc
Confidence            458899999999999999999998765221 11112111 112222322   669999995

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.37  E-value=1.6e-06  Score=63.39  Aligned_cols=71  Identities=18%  Similarity=0.276  Sum_probs=50.1

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChh----------hHHHHHHHHHHHHhhhC--CCCCEEEEeecCC
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA----------SYENVAKKWIPELRHYA--PGVPIILVGTKLD  121 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D  121 (198)
                      +.+..+|.+||..-+..|...+....++|||+.-+...          -+.+. -.+...+....  ..+.+|+.+||.|
T Consensus       202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~Ea-L~LFksiWnNRwL~tisvIlFLNKqD  280 (379)
T KOG0099|consen  202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD  280 (379)
T ss_pred             cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHH-HHHHHHHHhhhHHhhhheeEEecHHH
Confidence            56779999999999999999999999999999765421          11222 11222222221  4688999999999


Q ss_pred             cccc
Q 029144          122 LRDD  125 (198)
Q Consensus       122 l~~~  125 (198)
                      +...
T Consensus       281 llae  284 (379)
T KOG0099|consen  281 LLAE  284 (379)
T ss_pred             HHHH
Confidence            8754

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.32  E-value=6.4e-06  Score=66.14  Aligned_cols=84  Identities=14%  Similarity=0.157  Sum_probs=55.0

Q ss_pred             EEEEEEeCCCcc-------------CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029144           54 VNLGLWDTAGQE-------------DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL  120 (198)
Q Consensus        54 ~~l~i~D~~G~~-------------~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  120 (198)
                      -.+.+.|.||.-             ...++..++..+.+++|+|+--.+-+.-......+...+...  +...|+|++|.
T Consensus       412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq~DP~--GrRTIfVLTKV  489 (980)
T KOG0447|consen  412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQMDPH--GRRTIFVLTKV  489 (980)
T ss_pred             ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHhcCCC--CCeeEEEEeec
Confidence            456789999932             122445677889999999985433333333334555555555  88899999999


Q ss_pred             CcccccccccCCCCCccccHHHHHHHHHH
Q 029144          121 DLRDDKQFLADHPGAVPITTAQGEELRKL  149 (198)
Q Consensus       121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (198)
                      |+.+...          .+.+.+++....
T Consensus       490 DlAEknl----------A~PdRI~kIleG  508 (980)
T KOG0447|consen  490 DLAEKNV----------ASPSRIQQIIEG  508 (980)
T ss_pred             chhhhcc----------CCHHHHHHHHhc
Confidence            9988754          556666655443

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.32  E-value=2.2e-06  Score=64.77  Aligned_cols=84  Identities=21%  Similarity=0.193  Sum_probs=56.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEEC---------------CeEEEEEEEeCCCccCcc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVD---------------GSTVNLGLWDTAGQEDYN   68 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~---------------~~~~~l~i~D~~G~~~~~   68 (198)
                      +.+++.+||.|++|||||+|.+..... +.++..++.+.....+.+.               -....++++|++|.-.-.
T Consensus        19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA   98 (391)
T KOG1491|consen   19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA   98 (391)
T ss_pred             CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence            567999999999999999999997644 4455555544333333321               135789999999943322


Q ss_pred             c----ccc---cccCCCcEEEEEEECC
Q 029144           69 R----LRP---LSYRGADVFLLAFSLI   88 (198)
Q Consensus        69 ~----~~~---~~~~~~~~~i~v~d~~   88 (198)
                      +    +-.   ..++.+|+++-|+++.
T Consensus        99 s~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   99 SAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             ccCcCchHHHHHhhhhccceeEEEEec
Confidence            1    222   2356789999998764

>PRK12288 GTPase RsgA; Reviewed

Probab=98.32  E-value=1.1e-06  Score=68.11  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhCC
Q 029144            9 CVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~~   30 (198)
                      ++++|.+|+|||||+|+|+...
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~  229 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEA  229 (347)
T ss_pred             EEEECCCCCCHHHHHHHhcccc
Confidence            7899999999999999999753

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.31  E-value=3.5e-06  Score=58.21  Aligned_cols=65  Identities=11%  Similarity=-0.030  Sum_probs=37.0

Q ss_pred             EEEEEEEeCCCccCccccc--------ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           53 TVNLGLWDTAGQEDYNRLR--------PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~--------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      .....+.|+||-..-....        ....-..+.+++++|+.+..........+..++...     =++|+||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-----d~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-----DRILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-----CEEEEecccC
Confidence            3566789999964221111        112234789999999865443322223344444432     2568899996

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.31  E-value=1.7e-06  Score=66.67  Aligned_cols=94  Identities=15%  Similarity=0.087  Sum_probs=54.0

Q ss_pred             EEEEEEeCCCccCcccc----cccc--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144           54 VNLGLWDTAGQEDYNRL----RPLS--YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~----~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  127 (198)
                      +.+.++||+|.......    ....  ..+.|..++|+|+..+........    .+...  -.+--+|+||.|......
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~----~f~~~--~~~~giIlTKlD~~~~~G  296 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR----EFNEA--VGIDGVILTKVDADAKGG  296 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH----HHHhc--CCCCEEEEeeecCCCCcc
Confidence            45789999996542211    1111  235788999999976432222112    22211  123467789999965432


Q ss_pred             cccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHH
Q 029144          128 FLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF  170 (198)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  170 (198)
                                    -+...+...+. |+..++  +|++++++.
T Consensus       297 --------------~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~  322 (336)
T PRK14974        297 --------------AALSIAYVIGK-PILFLG--VGQGYDDLI  322 (336)
T ss_pred             --------------HHHHHHHHHCc-CEEEEe--CCCChhhcc
Confidence                          33444555666 555565  788887765

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.29  E-value=7e-06  Score=73.23  Aligned_cols=113  Identities=23%  Similarity=0.217  Sum_probs=62.0

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCCC----CCc--cccceeEEEEECCeEEEEEEEeCCCc----c----Ccccccccc
Q 029144            9 CVTVGDGAVGKTCMLISYTSNTFPTDY----VPT--VFDNFSANVVVDGSTVNLGLWDTAGQ----E----DYNRLRPLS   74 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~~~~~~~----~~t--~~~~~~~~~~~~~~~~~l~i~D~~G~----~----~~~~~~~~~   74 (198)
                      .+|+|++|+||||++.+- +..++-..    ..+  .+..........+.   -.++|++|.    +    .....|..+
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f  189 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF  189 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence            589999999999999765 22222110    011  11111111122222   339999992    1    122334433


Q ss_pred             c---------CCCcEEEEEEECCCh-----hhHHHH---HHHHHHHHhhhC-CCCCEEEEeecCCcccc
Q 029144           75 Y---------RGADVFLLAFSLISK-----ASYENV---AKKWIPELRHYA-PGVPIILVGTKLDLRDD  125 (198)
Q Consensus        75 ~---------~~~~~~i~v~d~~~~-----~s~~~~---~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~  125 (198)
                      +         +-.+++|+++|+.+-     +.....   ....+..+.... -..||.+++||+|+.+-
T Consensus       190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            3         247899999998542     211111   122233333333 58999999999999753

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=5.1e-07  Score=67.30  Aligned_cols=113  Identities=19%  Similarity=0.164  Sum_probs=75.0

Q ss_pred             EEEEEeCCCccCcccccccccCCCcEEEEEEECCC----hhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc
Q 029144           55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA  130 (198)
Q Consensus        55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~  130 (198)
                      .+.|.|+||++-.....-....-.|++++.+..+.    |.+-+.+   ..-.+..   -..++++-||.|+..+..   
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL---aaveiM~---LkhiiilQNKiDli~e~~---  196 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL---AAVEIMK---LKHIIILQNKIDLIKESQ---  196 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH---HHHHHhh---hceEEEEechhhhhhHHH---
Confidence            45699999998776655444445677777776543    2222222   1112222   256888899999976532   


Q ss_pred             CCCCCccccHHHHHHHHHHc---CCCEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          131 DHPGAVPITTAQGEELRKLI---GAPVYIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                           .....++++.|.+..   ++ |++++||.-++|++-+.+.|++.+..+.+
T Consensus       197 -----A~eq~e~I~kFi~~t~ae~a-PiiPisAQlkyNId~v~eyivkkIPvPvR  245 (466)
T KOG0466|consen  197 -----ALEQHEQIQKFIQGTVAEGA-PIIPISAQLKYNIDVVCEYIVKKIPVPVR  245 (466)
T ss_pred             -----HHHHHHHHHHHHhccccCCC-ceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence                 113445566666653   44 79999999999999999999999866544

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.26  E-value=1.3e-05  Score=61.49  Aligned_cols=95  Identities=12%  Similarity=0.039  Sum_probs=54.1

Q ss_pred             EEEEEEEeCCCccCcccc-----c------ccc-cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029144           53 TVNLGLWDTAGQEDYNRL-----R------PLS-YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL  120 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~-----~------~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  120 (198)
                      .+.+.++||||.......     .      ... -...+..++|+|++.+.  ..+ ... ..+...  -.+--+|+||.
T Consensus       196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~-~~a-~~f~~~--~~~~giIlTKl  269 (318)
T PRK10416        196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NAL-SQA-KAFHEA--VGLTGIILTKL  269 (318)
T ss_pred             CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHH-HHH-HHHHhh--CCCCEEEEECC
Confidence            367889999996543211     0      011 13467889999998533  222 111 122111  13446789999


Q ss_pred             CcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHH
Q 029144          121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF  170 (198)
Q Consensus       121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  170 (198)
                      |......              .+.......+. |+..++  +|++++++-
T Consensus       270 D~t~~~G--------------~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~  302 (318)
T PRK10416        270 DGTAKGG--------------VVFAIADELGI-PIKFIG--VGEGIDDLQ  302 (318)
T ss_pred             CCCCCcc--------------HHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence            9754322              34555566677 566666  777776664

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.25  E-value=7.8e-06  Score=59.80  Aligned_cols=87  Identities=17%  Similarity=0.136  Sum_probs=52.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC--CCCC--CCCCccccceeEEEEEC-CeEEEEEEEeCCCccCcccc------ccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT--DYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYNRL------RPL   73 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~--~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~------~~~   73 (198)
                      +..-|.|+|++++|||+|+|.+++.  .+.-  ...+++........... +....+.++||+|.......      ...
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence            4567999999999999999999987  5432  12233322222212121 23467889999996543221      112


Q ss_pred             ccCC--CcEEEEEEECCChh
Q 029144           74 SYRG--ADVFLLAFSLISKA   91 (198)
Q Consensus        74 ~~~~--~~~~i~v~d~~~~~   91 (198)
                      .+..  ++++|+..+.....
T Consensus        86 ~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          86 ALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHhCEEEEeccCcccH
Confidence            2233  77888877765443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.23  E-value=2e-05  Score=59.20  Aligned_cols=99  Identities=17%  Similarity=0.170  Sum_probs=74.4

Q ss_pred             CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH
Q 029144           66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE  145 (198)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (198)
                      +-..+.+....+.|-.++|+.+.+|+--.....+++-.....  ++.-+||+||+|+.++..          .-.++...
T Consensus        68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~----------~~~~~~~~  135 (301)
T COG1162          68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEE----------AAVKELLR  135 (301)
T ss_pred             ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchH----------HHHHHHHH
Confidence            444555556677888899999988886666667887777776  888899999999987643          11134555


Q ss_pred             HHHHcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          146 LRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       146 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      .....+. +.+.+|++++.+++++...+....
T Consensus       136 ~y~~~gy-~v~~~s~~~~~~~~~l~~~l~~~~  166 (301)
T COG1162         136 EYEDIGY-PVLFVSAKNGDGLEELAELLAGKI  166 (301)
T ss_pred             HHHhCCe-eEEEecCcCcccHHHHHHHhcCCe
Confidence            6667787 688899999999999988876543

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.22  E-value=6.5e-06  Score=45.85  Aligned_cols=43  Identities=28%  Similarity=0.378  Sum_probs=31.2

Q ss_pred             CcEEEEEEECCC--hhhHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029144           78 ADVFLLAFSLIS--KASYENVAKKWIPELRHYAPGVPIILVGTKLD  121 (198)
Q Consensus        78 ~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  121 (198)
                      .++++|++|++.  +-+.++. -.++..++..+++.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence            689999999974  5566666 678889999999999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.22  E-value=7.8e-06  Score=61.47  Aligned_cols=95  Identities=13%  Similarity=0.033  Sum_probs=54.6

Q ss_pred             EEEEEEEeCCCccCccccc------------ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029144           53 TVNLGLWDTAGQEDYNRLR------------PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL  120 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  120 (198)
                      .+.+.++||||........            ...-..+|..++|+|++...  +.. ... ..+....  .+--+|.||.
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~-~~~-~~f~~~~--~~~g~IlTKl  227 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NAL-EQA-KVFNEAV--GLTGIILTKL  227 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHH-HHH-HHHHhhC--CCCEEEEEcc
Confidence            3677899999975432221            01112478999999997432  222 211 2222221  2456788999


Q ss_pred             CcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHH
Q 029144          121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF  170 (198)
Q Consensus       121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  170 (198)
                      |......              .+.......+. |+..++  +|++++++-
T Consensus       228 De~~~~G--------------~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       228 DGTAKGG--------------IILSIAYELKL-PIKFIG--VGEKIDDLA  260 (272)
T ss_pred             CCCCCcc--------------HHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence            9965432              34455556666 555555  777776653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.19  E-value=7.6e-05  Score=50.88  Aligned_cols=147  Identities=20%  Similarity=0.239  Sum_probs=79.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCC-CccCcccc------------
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA-GQEDYNRL------------   70 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~-G~~~~~~~------------   70 (198)
                      ...+||.+-|+||+||||++.++...--...  -..+..+...+.-++..+-+.+.|+. |...+.+.            
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            4568999999999999999977764321111  12233445555566667777788877 32111100            


Q ss_pred             -------------cccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCc
Q 029144           71 -------------RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAV  136 (198)
Q Consensus        71 -------------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~  136 (198)
                                   ....++.+|++  ++|--.+-.+..  +.+...+.... .+.|++.++.+.+..+            
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks--~~f~~~ve~vl~~~kpliatlHrrsr~P------------  144 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELKS--KKFREAVEEVLKSGKPLIATLHRRSRHP------------  144 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhcc--HHHHHHHHHHhcCCCcEEEEEecccCCh------------
Confidence                         01222334443  455444333322  34444444433 4788887777665532            


Q ss_pred             cccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                           -+++ ....+. .++.   .+-.|-+.+++.+...+-
T Consensus       145 -----~v~~-ik~~~~-v~v~---lt~~NR~~i~~~Il~~L~  176 (179)
T COG1618         145 -----LVQR-IKKLGG-VYVF---LTPENRNRILNEILSVLK  176 (179)
T ss_pred             -----HHHH-hhhcCC-EEEE---EccchhhHHHHHHHHHhc
Confidence                 1222 233333 2332   455566688888887764

>PRK12289 GTPase RsgA; Reviewed

Probab=98.14  E-value=5.8e-06  Score=64.23  Aligned_cols=22  Identities=23%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhCC
Q 029144            9 CVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~~   30 (198)
                      ++++|.+|+|||||+|.++...
T Consensus       175 ~v~iG~SgVGKSSLIN~L~~~~  196 (352)
T PRK12289        175 TVVAGPSGVGKSSLINRLIPDV  196 (352)
T ss_pred             EEEEeCCCCCHHHHHHHHcCcc
Confidence            7999999999999999999653

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.13  E-value=1.1e-05  Score=59.59  Aligned_cols=59  Identities=17%  Similarity=0.307  Sum_probs=44.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeE---E--EEECCeEEEEEEEeCCC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA---N--VVVDGSTVNLGLWDTAG   63 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~---~--~~~~~~~~~l~i~D~~G   63 (198)
                      -.++|+-+|..|.|||||+..+++-.+.....+.....+..   +  +.-.+....+++.||.|
T Consensus        41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            36899999999999999999999988866555544433321   1  22256778899999999

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.12  E-value=4.5e-06  Score=63.33  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -.++++|++|+|||||+|.+.+..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~  185 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDL  185 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchh
Confidence            468999999999999999998754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.11  E-value=4.9e-06  Score=61.69  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|.+|+|||||+|++...
T Consensus       122 ~~~~~G~sgvGKStLiN~L~~~  143 (245)
T TIGR00157       122 ISVFAGQSGVGKSSLINALDPS  143 (245)
T ss_pred             EEEEECCCCCCHHHHHHHHhhh
Confidence            6789999999999999999975

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.08  E-value=7.1e-06  Score=64.24  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+++++|.+|+|||||+|+++..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~  177 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQ  177 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhh
Confidence            47999999999999999999974

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.07  E-value=9.2e-06  Score=61.01  Aligned_cols=59  Identities=15%  Similarity=0.169  Sum_probs=35.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC------CCCCC-CCccccceeEEEEECCeEEEEEEEeCCCccCccc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT------FPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR   69 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~------~~~~~-~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~   69 (198)
                      -.+++|.+|+|||||+|++....      +.+.. ...+.......+..++..   .+.||||-..+.-
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l  231 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL  231 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence            46899999999999999998632      11111 111122233334443221   2899999866543

>PRK13695 putative NTPase; Provisional

Probab=98.01  E-value=0.00032  Score=49.23  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++|++.|.+|+|||||+..+..
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999987653

>PRK13796 GTPase YqeH; Provisional

Probab=97.99  E-value=1.1e-05  Score=63.18  Aligned_cols=23  Identities=22%  Similarity=0.280  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++.++|.+|+|||||+|+++..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~  183 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKE  183 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhh
Confidence            47999999999999999999864

>PRK00098 GTPase RsgA; Reviewed

Probab=97.97  E-value=1.5e-05  Score=60.82  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|++|+|||||+|.+....
T Consensus       166 ~~~~~G~sgvGKStlin~l~~~~  188 (298)
T PRK00098        166 VTVLAGQSGVGKSTLLNALAPDL  188 (298)
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            58899999999999999998654

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.95  E-value=5.5e-05  Score=53.79  Aligned_cols=122  Identities=16%  Similarity=0.157  Sum_probs=66.3

Q ss_pred             EEEEeCCCccC-ccccc--ccc---cCC---CcEEEEEEECCCh-hhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccc
Q 029144           56 LGLWDTAGQED-YNRLR--PLS---YRG---ADVFLLAFSLISK-ASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD  124 (198)
Q Consensus        56 l~i~D~~G~~~-~~~~~--~~~---~~~---~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~  124 (198)
                      .-++|+|||-+ |....  +..   +.+   .=++++++|.+=- ++.+.+ .-.+..+.... -..|.|-|++|+||..
T Consensus       100 ylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~Kfi-SG~lsAlsAMi~lE~P~INvlsKMDLlk  178 (273)
T KOG1534|consen  100 YLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFI-SGCLSALSAMISLEVPHINVLSKMDLLK  178 (273)
T ss_pred             EEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHH-HHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence            44999999854 33221  111   111   2255666665311 111111 12222222222 3799999999999987


Q ss_pred             ccccc-------c------CCCCCcccc------HHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          125 DKQFL-------A------DHPGAVPIT------TAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       125 ~~~~~-------~------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      .....       .      ...+...-+      ..-...+..+++...|++..+.+-++++.++..|-.++.
T Consensus       179 ~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ  251 (273)
T KOG1534|consen  179 DKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ  251 (273)
T ss_pred             hhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence            62210       0      001111111      122345566788888999999999999999988776653

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.95  E-value=0.00013  Score=58.02  Aligned_cols=67  Identities=13%  Similarity=0.026  Sum_probs=39.5

Q ss_pred             EEEEEEEeCCCccCccccc----cc--ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           53 TVNLGLWDTAGQEDYNRLR----PL--SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~----~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      .+.+.|+||||........    ..  ...+++.+++|+|+..+......    ...+...  -.+--+|+||.|....
T Consensus       182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~ar  254 (429)
T TIGR01425       182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGHAK  254 (429)
T ss_pred             CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCCCC
Confidence            4678899999964332111    11  12357889999998755433222    1233222  2355778999998654

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.94  E-value=1.3e-05  Score=57.71  Aligned_cols=119  Identities=18%  Similarity=0.117  Sum_probs=63.7

Q ss_pred             EEEEEEeCCCccCcc----cccc--cccCCCcEEEEEEEC------CChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecC
Q 029144           54 VNLGLWDTAGQEDYN----RLRP--LSYRGADVFLLAFSL------ISKASYENVAKKWIPELRHYA-PGVPIILVGTKL  120 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~----~~~~--~~~~~~~~~i~v~d~------~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~  120 (198)
                      -...++|+|||-++-    +++.  ..++..+.=+.++..      ++|..+-..   ++..+.... =..|-|-|+.|+
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~---lL~sl~tMl~melphVNvlSK~  173 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS---LLVSLATMLHMELPHVNVLSKA  173 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH---HHHHHHHHHhhcccchhhhhHh
Confidence            345699999985432    1211  223345544444443      455555443   222222222 278999999999


Q ss_pred             Cccccccccc-------------------CC-CC--CccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHH
Q 029144          121 DLRDDKQFLA-------------------DH-PG--AVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       121 Dl~~~~~~~~-------------------~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  175 (198)
                      |+........                   +. ..  ..+--.+.+-.+...++...|...+..+.+++-.+...|-+
T Consensus       174 Dl~~~ygkl~f~ld~yt~v~Dl~yL~~~ld~dp~~~kYrkLne~ic~~IeD~~LVSF~~L~v~nkeSml~l~~~IDk  250 (290)
T KOG1533|consen  174 DLLKKYGKLPFNLDFYTEVQDLSYLEDLLDVDPRLRKYRKLNEAICELIEDFNLVSFEVLDVDNKESMLRLQQTIDK  250 (290)
T ss_pred             HHHHhhcccccccchhhhhhhHHHHHHHhccChhhhHHHHHHHHHHHHHhccCceeeEEeeccCHHHHHHHHHHHHh
Confidence            9976544110                   01 11  11122344556677777766666666666666666655543

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=3.4e-06  Score=65.52  Aligned_cols=116  Identities=17%  Similarity=0.096  Sum_probs=80.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC--CCC---CCCCCcc-ccc-----------eeEEEEECCeEEEEEEEeCCCccCcc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN--TFP---TDYVPTV-FDN-----------FSANVVVDGSTVNLGLWDTAGQEDYN   68 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~--~~~---~~~~~t~-~~~-----------~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (198)
                      .-+|.++.+-.+||||...+++.-  .+.   ..-...+ .++           .+.-+..+-+.++++++||||+-.|+
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~  116 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR  116 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence            347889999999999999888732  110   0001111 111           12223445556888899999999999


Q ss_pred             cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      -...+.++-.|+++.|+|++-+-..+.+ ..|.+. .++  ++|....+||+|....
T Consensus       117 leverclrvldgavav~dasagve~qtl-tvwrqa-dk~--~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  117 LEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQA-DKF--KIPAHCFINKMDKLAA  169 (753)
T ss_pred             EEHHHHHHHhcCeEEEEeccCCccccee-eeehhc-ccc--CCchhhhhhhhhhhhh
Confidence            9999999999999999999877665555 455433 222  6888888999997643

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.89  E-value=5.8e-05  Score=60.25  Aligned_cols=115  Identities=17%  Similarity=0.221  Sum_probs=75.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC--CC------CCCCCccccceeEEEEE-----------------------CCeE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FP------TDYVPTVFDNFSANVVV-----------------------DGST   53 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~------~~~~~t~~~~~~~~~~~-----------------------~~~~   53 (198)
                      +.-++-++-+..-|||||-..+....  +.      ..+..|..+...+.+++                       ++..
T Consensus        18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~   97 (842)
T KOG0469|consen   18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG   97 (842)
T ss_pred             ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence            44577889999999999998887431  11      11111111111111111                       2345


Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  123 (198)
                      +.++++|.||+-.|.+..+..++--|+.++|+|--++--.+.. .-+.+.+...   +.-++++||.|..
T Consensus        98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~ER---IkPvlv~NK~DRA  163 (842)
T KOG0469|consen   98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAER---IKPVLVMNKMDRA  163 (842)
T ss_pred             eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHhh---ccceEEeehhhHH
Confidence            8889999999999999999999999999999997766544433 3444444443   4445679999975

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.87  E-value=0.00011  Score=58.77  Aligned_cols=65  Identities=22%  Similarity=0.144  Sum_probs=37.6

Q ss_pred             EEEEEEeCCCccCccccc------ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeecCCcccc
Q 029144           54 VNLGLWDTAGQEDYNRLR------PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDD  125 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~  125 (198)
                      ..+.++||||........      ...+..+|.+++|+|++...   +. -.....+..   ..++ -+|.||.|....
T Consensus       176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~a-v~~a~~F~~---~l~i~gvIlTKlD~~a~  247 (437)
T PRK00771        176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QA-KNQAKAFHE---AVGIGGIIITKLDGTAK  247 (437)
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HH-HHHHHHHHh---cCCCCEEEEecccCCCc
Confidence            367899999975533111      11234678999999987652   22 112222222   2333 567899998643

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.86  E-value=0.0024  Score=44.21  Aligned_cols=143  Identities=8%  Similarity=0.018  Sum_probs=92.3

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      |+..+...|+++|..+.++..|..++....-  .                   +.+++.-...-..- ......-...|.
T Consensus        10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~--~-------------------~~l~Vh~a~sLPLp-~e~~~lRprIDl   67 (176)
T PF11111_consen   10 LPELNTATILLVGTEEALLQQLAEAMLEEDK--E-------------------FKLKVHLAKSLPLP-SENNNLRPRIDL   67 (176)
T ss_pred             CCCcceeEEEEecccHHHHHHHHHHHHhhcc--c-------------------eeEEEEEeccCCCc-ccccCCCceeEE
Confidence            4455778999999999999999999886321  1                   12222222111000 001111123699


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++|++|..+.-+++.. +.-+..+...+.--.+.++++-....+.-          .+..++..+++..+.. +++.+.-
T Consensus        68 IVFvinl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~----------sv~~~~V~kla~~y~~-plL~~~l  135 (176)
T PF11111_consen   68 IVFVINLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHC----------SVHPNEVRKLAATYNS-PLLFADL  135 (176)
T ss_pred             EEEEEecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCccccc----------ccCHHHHHHHHHHhCC-CEEEeec
Confidence            9999999999999988 55555555544333445555555554433          2788999999999998 6777777


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 029144          161 KTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~  177 (198)
                      .+.++...+-..+.+.+
T Consensus       136 e~~~~~~~lAqRLL~~l  152 (176)
T PF11111_consen  136 ENEEGRTSLAQRLLRML  152 (176)
T ss_pred             ccchHHHHHHHHHHHHH
Confidence            77777666666666554

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.85  E-value=0.00074  Score=49.43  Aligned_cols=167  Identities=17%  Similarity=0.201  Sum_probs=91.2

Q ss_pred             eEEEEECCCCC--CHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            7 IKCVTVGDGAV--GKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         7 ~~i~vvG~~~~--GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      -.++|+|.+|+  ||.+++.++....+...........+ ..++.-......+.+.-.+--+.+.--......-..++++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vm   84 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVM   84 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEE
Confidence            46889999999  99999999988766443332222111 1111111111111222111111111111112233568999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccc-------cc--------------cC-----CC---
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQ-------FL--------------AD-----HP---  133 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-------~~--------------~~-----~~---  133 (198)
                      |||.+....+..+ ..|+..-...  ..- .+-++||.|..++..       +.              .+     ..   
T Consensus        85 vfdlse~s~l~al-qdwl~htdin--sfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegss  161 (418)
T KOG4273|consen   85 VFDLSEKSGLDAL-QDWLPHTDIN--SFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSS  161 (418)
T ss_pred             EEeccchhhhHHH-Hhhccccccc--cchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccc
Confidence            9999988888777 7776543332  222 245689999876421       00              00     00   


Q ss_pred             -----CCccccHHHHHHHHHHcCCCEEEEeccCCC------------CCHHHHHHHHHHHH
Q 029144          134 -----GAVPITTAQGEELRKLIGAPVYIECSSKTQ------------QNVKAVFDAAIKVV  177 (198)
Q Consensus       134 -----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~i~~~~~~i~~~~  177 (198)
                           ...-.......+++.+.++ .+++.++.+.            .|++.+|..+...+
T Consensus       162 llgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahm  221 (418)
T KOG4273|consen  162 LLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM  221 (418)
T ss_pred             ccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence                 1111122335678888888 8999888532            47888888877655

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=5.8e-05  Score=58.59  Aligned_cols=163  Identities=14%  Similarity=0.064  Sum_probs=92.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC--CCC----------------C--------CCCCcc---ccceeEEE-EECCeE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFP----------------T--------DYVPTV---FDNFSANV-VVDGST   53 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~----------------~--------~~~~t~---~~~~~~~~-~~~~~~   53 (198)
                      ...++++++|+..+||||+-..++..  ...                +        ++....   +....... ...-..
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            45789999999999999998554421  000                0        000000   00010001 112223


Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhh---HHHH-HHHHHHHHhhhCCCCCEEEEeecCCcccccccc
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---YENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL  129 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~  129 (198)
                      -++++.|+||+-.|-...-....+||+.++|+++...+.   |+.- ..+-...+.+...-...|+++||+|-+..+-  
T Consensus       157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnW--  234 (501)
T KOG0459|consen  157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW--  234 (501)
T ss_pred             eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCc--
Confidence            567799999999988877777889999999999854321   2111 0011123333334567889999999875321  


Q ss_pred             cCCCCCccccHHHHHHHHHHcCC-----CEEEEeccCCCCCHHHHH
Q 029144          130 ADHPGAVPITTAQGEELRKLIGA-----PVYIECSSKTQQNVKAVF  170 (198)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~  170 (198)
                        +.+......+....+....+.     ..|+++|..+|.++++.-
T Consensus       235 --s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  235 --SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             --chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence              000001122333444443322     248899999999988754

>KOG3929 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=2.5e-06  Score=62.21  Aligned_cols=151  Identities=16%  Similarity=0.168  Sum_probs=84.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECC--eEEEEEEEeCCCccCccccccccc--CCC
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG--STVNLGLWDTAGQEDYNRLRPLSY--RGA   78 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~l~i~D~~G~~~~~~~~~~~~--~~~   78 (198)
                      .+.+..|++.|..+.  ||+|++++...- ....|+..-.+.......+  ..-..++|+.+|......+..--+  .+.
T Consensus        42 ~~~E~~I~~~Gn~~~--tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l  118 (363)
T KOG3929|consen   42 EKFEFFIGSKGNGGK--TTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL  118 (363)
T ss_pred             ccceeEEEEecCCce--eEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence            345778999998764  999988886642 2233444333333222322  223356999999765443322222  122


Q ss_pred             --cEEEEEEECCChhhHHHHHHHHHHHHhhh------------------------------------C--CCCCEEEEee
Q 029144           79 --DVFLLAFSLISKASYENVAKKWIPELRHY------------------------------------A--PGVPIILVGT  118 (198)
Q Consensus        79 --~~~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------------~--~~~p~iiv~n  118 (198)
                        -.+|+++|++++..+....+..++.++.+                                    +  --.||+||+.
T Consensus       119 ~~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgs  198 (363)
T KOG3929|consen  119 RTFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGS  198 (363)
T ss_pred             hhhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEecc
Confidence              26789999999876543323332222210                                    0  0369999999


Q ss_pred             cCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144          119 KLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus       119 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |.|.....+     +..+.....-++.++..+|. .....|++-
T Consensus       199 KYDvFq~Fe-----sekRkH~C~~LRf~Ah~yGa-aLlmfSskM  236 (363)
T KOG3929|consen  199 KYDVFQDFE-----SEKRKHICKTLRFVAHYYGA-ALLMFSSKM  236 (363)
T ss_pred             chhhhcccc-----HHHHHHHHHHHHHHHHHhhh-HHHHHHHhh
Confidence            999976532     22222333445566667776 344456554

>PRK10867 signal recognition particle protein; Provisional

Probab=97.78  E-value=0.0003  Score=56.28  Aligned_cols=80  Identities=19%  Similarity=0.142  Sum_probs=43.1

Q ss_pred             EEEEEEeCCCccCcccc-c---cc--ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144           54 VNLGLWDTAGQEDYNRL-R---PL--SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~-~---~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  127 (198)
                      +.+.|+||||....... .   ..  ..-..+.+++|+|+........    ....+....  ...-+|.||.|......
T Consensus       184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~----~a~~F~~~~--~i~giIlTKlD~~~rgG  257 (433)
T PRK10867        184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVN----TAKAFNEAL--GLTGVILTKLDGDARGG  257 (433)
T ss_pred             CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHH----HHHHHHhhC--CCCEEEEeCccCccccc
Confidence            66889999995432211 0   00  1125678899999875432222    222333221  12346679999754322


Q ss_pred             cccCCCCCccccHHHHHHHHHHcCCC
Q 029144          128 FLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                                    .+.......+.|
T Consensus       258 --------------~alsi~~~~~~P  269 (433)
T PRK10867        258 --------------AALSIRAVTGKP  269 (433)
T ss_pred             --------------HHHHHHHHHCcC
Confidence                          355566666663

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.77  E-value=3.7e-05  Score=61.27  Aligned_cols=55  Identities=18%  Similarity=0.208  Sum_probs=37.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCC-CCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (198)
                      .+.|.+||.|||||||.||.+.+.+-+.- .+|.....|+... +..   .+.+.|+||.
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~-ls~---~v~LCDCPGL  369 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIF-LSP---SVCLCDCPGL  369 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEE-cCC---CceecCCCCc
Confidence            58899999999999999999999865432 2222223333332 222   3569999995

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.72  E-value=0.00038  Score=54.53  Aligned_cols=22  Identities=23%  Similarity=0.199  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      -.++++|++|+||||++.++..
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999977754

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.71  E-value=0.00019  Score=50.09  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ||++-|.+|+||||++++++..
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~   22 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEE   22 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHH
Confidence            6899999999999999888754

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.71  E-value=4.6e-05  Score=57.21  Aligned_cols=60  Identities=18%  Similarity=0.190  Sum_probs=36.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc------cceeEEEEECCeEEEEEEEeCCCc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF------DNFSANVVVDGSTVNLGLWDTAGQ   64 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~------~~~~~~~~~~~~~~~l~i~D~~G~   64 (198)
                      ...++++|+|.||+|||||+|++........-...++      ..+...+.+... -.+.+.||||.
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~r-p~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHR-PPVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccC-CceEEecCCCc
Confidence            4578999999999999999998765432221111111      112222233222 23669999995

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.70  E-value=0.00045  Score=47.19  Aligned_cols=58  Identities=16%  Similarity=0.081  Sum_probs=35.3

Q ss_pred             EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029144           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD  121 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  121 (198)
                      .+.+.++|++|...   ....++..+|.+++|...+-.+.+.-.  .+ ..+.     .-=+++.||.|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~--k~-~~~~-----~~~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAI--KA-GIME-----IADIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHh--hh-hHhh-----hcCEEEEeCCC
Confidence            46788999988642   223477889999999887633322221  11 1222     22367789987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.70  E-value=0.00019  Score=63.39  Aligned_cols=114  Identities=23%  Similarity=0.213  Sum_probs=58.3

Q ss_pred             EEEECCCCCCHHHHHHHHhhC-CCCCCCCCccccce-eEEE--EECCeEEEEEEEeCCCc----c----Ccccccccc--
Q 029144            9 CVTVGDGAVGKTCMLISYTSN-TFPTDYVPTVFDNF-SANV--VVDGSTVNLGLWDTAGQ----E----DYNRLRPLS--   74 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~-~~~~~~~~t~~~~~-~~~~--~~~~~~~~l~i~D~~G~----~----~~~~~~~~~--   74 (198)
                      -+|||++|+||||++..--.. .+.+.......... ...+  ...+   .-.++||+|.    +    .-...|..+  
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~  204 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG  204 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence            479999999999999432211 11111100000000 1111  1122   2338898882    1    112333322  


Q ss_pred             -------cCCCcEEEEEEECCChhh-----HHHHHHHH---HHHHhhhC-CCCCEEEEeecCCcccc
Q 029144           75 -------YRGADVFLLAFSLISKAS-----YENVAKKW---IPELRHYA-PGVPIILVGTKLDLRDD  125 (198)
Q Consensus        75 -------~~~~~~~i~v~d~~~~~s-----~~~~~~~~---~~~~~~~~-~~~p~iiv~nK~Dl~~~  125 (198)
                             .+-.+++|+.+|+.+--+     .+.....+   ++.+.... -..||.+++||.|+.+-
T Consensus       205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence                   345789999999854211     11111112   22233222 48999999999999763

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.65  E-value=0.00026  Score=47.77  Aligned_cols=67  Identities=12%  Similarity=0.012  Sum_probs=45.4

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  124 (198)
                      +.+.++|+|+..  .......+..+|.++++.+.+ ..++... ...++.+.......++.+|.|+++...
T Consensus        45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~~~  111 (139)
T cd02038          45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDA-YALIKKLAKQLRVLNFRVVVNRAESPK  111 (139)
T ss_pred             CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCCHH
Confidence            667899999753  333345788899999999875 4455544 344455544444667889999997543

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.56  E-value=0.0005  Score=55.98  Aligned_cols=81  Identities=22%  Similarity=0.184  Sum_probs=43.8

Q ss_pred             EEEEEEEeCCCccCcccccc---cccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144           53 TVNLGLWDTAGQEDYNRLRP---LSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~---~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  127 (198)
                      .+.+.|+||+|.........   ..+.  .....++|++.+..  ..+. ...+..+..   ..+.-+|+||.|....  
T Consensus       428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl-~eii~~f~~---~~~~gvILTKlDEt~~--  499 (559)
T PRK12727        428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDL-DEVVRRFAH---AKPQGVVLTKLDETGR--  499 (559)
T ss_pred             cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHH-HHHHHHHHh---hCCeEEEEecCcCccc--
Confidence            46788999999643321100   0010  12345677776532  3333 233333332   2467789999999542  


Q ss_pred             cccCCCCCccccHHHHHHHHHHcCCC
Q 029144          128 FLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                                  .-.+.......+.+
T Consensus       500 ------------lG~aLsv~~~~~LP  513 (559)
T PRK12727        500 ------------FGSALSVVVDHQMP  513 (559)
T ss_pred             ------------hhHHHHHHHHhCCC
Confidence                        24556666677763

>PRK08118 topology modulation protein; Reviewed

Probab=97.56  E-value=7.5e-05  Score=52.09  Aligned_cols=23  Identities=22%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -+|+|+|++|+|||||.+.+...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999888754

>TIGR00959 ffh signal recognition particle protein

Probab=97.54  E-value=0.00034  Score=55.89  Aligned_cols=80  Identities=19%  Similarity=0.157  Sum_probs=44.8

Q ss_pred             EEEEEEeCCCccCccccc----cc--ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144           54 VNLGLWDTAGQEDYNRLR----PL--SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~----~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  127 (198)
                      +.+.|+||||........    ..  ..-+.+.+++|+|+....   +. ......+....  ...=+|.||.|......
T Consensus       183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~-~~~a~~f~~~v--~i~giIlTKlD~~~~~G  256 (428)
T TIGR00959       183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DA-VNTAKTFNERL--GLTGVVLTKLDGDARGG  256 (428)
T ss_pred             CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HH-HHHHHHHHhhC--CCCEEEEeCccCccccc
Confidence            567899999954332110    00  123578889999987543   22 22333333322  12346689999754322


Q ss_pred             cccCCCCCccccHHHHHHHHHHcCCC
Q 029144          128 FLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                                    .+...+...+.|
T Consensus       257 --------------~~lsi~~~~~~P  268 (428)
T TIGR00959       257 --------------AALSVRSVTGKP  268 (428)
T ss_pred             --------------HHHHHHHHHCcC
Confidence                          356666667764

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.54  E-value=0.0062  Score=47.00  Aligned_cols=99  Identities=16%  Similarity=0.066  Sum_probs=51.9

Q ss_pred             EEEEEEeCCCccCc----cc-cccccc---CCCcEEEEEEECCChhhHHH-HHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144           54 VNLGLWDTAGQEDY----NR-LRPLSY---RGADVFLLAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (198)
Q Consensus        54 ~~l~i~D~~G~~~~----~~-~~~~~~---~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  124 (198)
                      +...++++.|...=    .+ .+...+   -..|+++-|+|+.+-..... .......++..     .=+|++||+|+.+
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~Dlv~  159 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTDLVD  159 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecccCCC
Confidence            44557777774321    11 111122   23578999999976544332 22333334432     2378899999976


Q ss_pred             ccccccCCCCCccccHHHHHHHHHHc-CCCEEEEeccCCCCCHHHHH
Q 029144          125 DKQFLADHPGAVPITTAQGEELRKLI-GAPVYIECSSKTQQNVKAVF  170 (198)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~  170 (198)
                      +.            ..+..+...++. ...+++.+|. .+.+..+++
T Consensus       160 ~~------------~l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         160 AE------------ELEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             HH------------HHHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            53            233334444443 2235776666 344444444

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.54  E-value=8.5e-05  Score=48.71  Aligned_cols=22  Identities=14%  Similarity=0.216  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .|+|.|++||||||+.+.+...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988764

...

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.50  E-value=0.00014  Score=56.39  Aligned_cols=57  Identities=25%  Similarity=0.284  Sum_probs=37.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCC-CCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (198)
                      .+.+++.|+|-|++||||+||++........ ..|+. ......+..+   -.+.+.|.||.
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGv-T~smqeV~Ld---k~i~llDsPgi  307 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGV-TRSMQEVKLD---KKIRLLDSPGI  307 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccc-hhhhhheecc---CCceeccCCce
Confidence            4678999999999999999999998765222 11111 1122222232   24569999995

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.49  E-value=0.0001  Score=51.91  Aligned_cols=23  Identities=13%  Similarity=0.348  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+|+|+|+||+||||+..++...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988866

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.48  E-value=0.00049  Score=48.22  Aligned_cols=45  Identities=18%  Similarity=0.144  Sum_probs=29.9

Q ss_pred             cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           79 DVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      |++++|+|+.++.+...  ..+...+.....+.|+++|+||+|+.+.
T Consensus         1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~~   45 (172)
T cd04178           1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence            78999999988644322  2333332111136899999999999653

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK07261 topology modulation protein; Provisional

Probab=97.48  E-value=0.00011  Score=51.42  Aligned_cols=23  Identities=17%  Similarity=0.348  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+|+|+|.+|+|||||.+.+...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999887643

>TIGR00235 udk uridine kinase

Probab=97.46  E-value=0.00017  Score=52.17  Aligned_cols=29  Identities=21%  Similarity=0.125  Sum_probs=25.6

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      |-+++..-|+++|++|+|||||++.+...
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            67788889999999999999999888753

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.45  E-value=0.0013  Score=52.50  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      -.|+++|+.|+||||++..+..
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999976653

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.44  E-value=0.00078  Score=45.12  Aligned_cols=25  Identities=16%  Similarity=0.137  Sum_probs=21.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .-.+++.|++|+|||++++.+....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3479999999999999999888764

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.42  E-value=0.00012  Score=49.39  Aligned_cols=21  Identities=14%  Similarity=0.249  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |+++|++|+||||+++.+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999988743

...

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.42  E-value=0.003  Score=48.73  Aligned_cols=22  Identities=23%  Similarity=0.190  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      =.++-|.-|+|||||+++++..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc
Confidence            3567899999999999999854

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.42  E-value=0.00019  Score=50.08  Aligned_cols=29  Identities=17%  Similarity=0.132  Sum_probs=25.0

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      |...+..-+.++|.+|+|||||++++...
T Consensus         1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence            66667778999999999999999988865

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.41  E-value=0.00019  Score=41.01  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ..++.|+.|+|||||+.++..-
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999877643

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.35  E-value=0.00012  Score=50.73  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=17.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ||+|.|.+++|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999988765

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.33  E-value=0.0018  Score=40.22  Aligned_cols=69  Identities=22%  Similarity=0.225  Sum_probs=42.3

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc-cccccCCCcEEEEEEEC
Q 029144            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-RPLSYRGADVFLLAFSL   87 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~   87 (198)
                      +++.|..|+||||+...+...--...+         ....++    .+.++|+++....... .......+|.++++++.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            678899999999999766543211111         111122    4669999976432221 13455678999999886


Q ss_pred             CCh
Q 029144           88 ISK   90 (198)
Q Consensus        88 ~~~   90 (198)
                      ...
T Consensus        69 ~~~   71 (99)
T cd01983          69 EAL   71 (99)
T ss_pred             chh
Confidence            543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.32  E-value=0.00031  Score=50.83  Aligned_cols=27  Identities=19%  Similarity=0.154  Sum_probs=23.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ..+.+.|.|.|++|||||||.+.+...
T Consensus         3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          3 MKKPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999887754

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.31  E-value=0.00023  Score=52.29  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=22.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+++++|+|++|||||+|+..++..
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            5789999999999999999888764

This is thought to be an ATPase involved in viral DNA packaging [].

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.31  E-value=0.00028  Score=41.53  Aligned_cols=21  Identities=14%  Similarity=0.251  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |++.|++|+||||+.+.+...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999888765

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.27  E-value=0.0004  Score=49.30  Aligned_cols=24  Identities=8%  Similarity=0.044  Sum_probs=21.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ..=|+|+|++|+|||||+++++..
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~   27 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEE   27 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            445899999999999999999865

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.24  E-value=0.00051  Score=49.64  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +..-|+|+|++|+|||||++.+...
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            4567889999999999999998754

>PRK14530 adenylate kinase; Provisional

Probab=97.22  E-value=0.00039  Score=50.56  Aligned_cols=21  Identities=14%  Similarity=0.227  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      +|+|+|++||||||+.+.+..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999988853

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.00026  Score=54.89  Aligned_cols=53  Identities=13%  Similarity=0.144  Sum_probs=32.7

Q ss_pred             eEEEEEEEeCCCccCcc-cccc-----cccCCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 029144           52 STVNLGLWDTAGQEDYN-RLRP-----LSYRGADVFLLAFSLISKASYENVAKKWIPEL  104 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~-~~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  104 (198)
                      ..+.+.|.||+|...-. ++..     .-.-+.|-+|+|.|++-+...+.....+.+.+
T Consensus       182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v  240 (483)
T KOG0780|consen  182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV  240 (483)
T ss_pred             cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence            35778899999943211 1111     11235899999999988776655545444443

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.21  E-value=0.00042  Score=50.85  Aligned_cols=28  Identities=25%  Similarity=0.239  Sum_probs=23.4

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      |--..+++|+|+|+|||||||+...+..
T Consensus         1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~   28 (229)
T PTZ00088          1 MKLKGPLKIVLFGAPGVGKGTFAEILSK   28 (229)
T ss_pred             CCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            3445678999999999999999988764

>PRK14527 adenylate kinase; Provisional

Probab=97.21  E-value=0.0004  Score=49.52  Aligned_cols=28  Identities=14%  Similarity=0.173  Sum_probs=24.4

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      |+.++..-|+++|++|+||||+...+..
T Consensus         1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~   28 (191)
T PRK14527          1 MTQTKNKVVIFLGPPGAGKGTQAERLAQ   28 (191)
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            6667778899999999999999988864

>PRK06217 hypothetical protein; Validated

Probab=97.21  E-value=0.00034  Score=49.51  Aligned_cols=23  Identities=13%  Similarity=0.237  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+|+|+|.+|+||||+.+++...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988754

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.20  E-value=0.0064  Score=48.84  Aligned_cols=80  Identities=20%  Similarity=0.108  Sum_probs=44.5

Q ss_pred             EEEEEEeCCCccCcc----cccccccC---CCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           54 VNLGLWDTAGQEDYN----RLRPLSYR---GADVFLLAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~----~~~~~~~~---~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      +.+.++|+||.....    .....++.   ...-+.+|++++-. ..+..    ....+...  + +--+|.||.|....
T Consensus       300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~----~~~~f~~~--~-~~~vI~TKlDet~~  372 (424)
T PRK05703        300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKD----IYKHFSRL--P-LDGLIFTKLDETSS  372 (424)
T ss_pred             CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHH----HHHHhCCC--C-CCEEEEeccccccc
Confidence            567899999975443    11112222   23466788887543 22332    22233322  1 23577899999543


Q ss_pred             cccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144          126 KQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                                    .-.+..+....+.+.
T Consensus       373 --------------~G~i~~~~~~~~lPv  387 (424)
T PRK05703        373 --------------LGSILSLLIESGLPI  387 (424)
T ss_pred             --------------ccHHHHHHHHHCCCE
Confidence                          235667777777743

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.20  E-value=0.00075  Score=52.92  Aligned_cols=66  Identities=30%  Similarity=0.381  Sum_probs=36.3

Q ss_pred             EEEEEEEeCCCccCccccc----ccccC--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeecCCcccc
Q 029144           53 TVNLGLWDTAGQEDYNRLR----PLSYR--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLRDD  125 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~----~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~  125 (198)
                      .+.+.++||.|...++...    ..++.  ...-+.+|++++..  ..++ .+.+..++.    .|+ -++.||.|....
T Consensus       281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dl-kei~~~f~~----~~i~~~I~TKlDET~s  353 (407)
T COG1419         281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDL-KEIIKQFSL----FPIDGLIFTKLDETTS  353 (407)
T ss_pred             cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHH-HHHHHHhcc----CCcceeEEEcccccCc
Confidence            4567899999976654221    22222  23355667777643  2333 333334332    333 466899998653

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.18  E-value=0.0004  Score=46.02  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=19.5

Q ss_pred             EEEECCCCCCHHHHHHHHhhCC
Q 029144            9 CVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~~   30 (198)
                      |++.|++|+|||++++.+...-
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999887753

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.17  E-value=0.00043  Score=45.98  Aligned_cols=25  Identities=20%  Similarity=0.133  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF   31 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~   31 (198)
                      -.++++|++|+||||++..+.....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccC
Confidence            4789999999999999998887653

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.16  E-value=0.0029  Score=49.99  Aligned_cols=101  Identities=18%  Similarity=0.124  Sum_probs=56.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHh----hCCC------CCCCCCccccc-------eeEEEEE-----------------
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYT----SNTF------PTDYVPTVFDN-------FSANVVV-----------------   49 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~----~~~~------~~~~~~t~~~~-------~~~~~~~-----------------   49 (198)
                      ..+..|+++|..|+||||.+-.+-    ....      .+.|.|...+.       +...+.-                 
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~  177 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK  177 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence            357789999999999999884332    2111      12233322110       0000000                 


Q ss_pred             -CCeEEEEEEEeCCCccCcccc-c-----ccccCCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 029144           50 -DGSTVNLGLWDTAGQEDYNRL-R-----PLSYRGADVFLLAFSLISKASYENVAKKWIPEL  104 (198)
Q Consensus        50 -~~~~~~l~i~D~~G~~~~~~~-~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  104 (198)
                       ....+.+.|+||+|-...+.. .     -...-+.|-+++|+|+.-+.........+.+.+
T Consensus       178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l  239 (451)
T COG0541         178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEAL  239 (451)
T ss_pred             HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhc
Confidence             112356789999995443211 1     122346899999999987766555544444443

>PRK03839 putative kinase; Provisional

Probab=97.16  E-value=0.00041  Score=48.91  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +|+++|.+|+||||+.+.+...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999888653

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.15  E-value=0.00053  Score=49.21  Aligned_cols=22  Identities=18%  Similarity=0.157  Sum_probs=19.4

Q ss_pred             eccCCCCCHHHHHHHHHHHHcC
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +||++.+-+.|+++.+.+.+..
T Consensus       164 TSALDPElv~EVL~vm~~LA~e  185 (240)
T COG1126         164 TSALDPELVGEVLDVMKDLAEE  185 (240)
T ss_pred             cccCCHHHHHHHHHHHHHHHHc
Confidence            9999999999999988887754

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.14  E-value=0.0078  Score=45.27  Aligned_cols=80  Identities=20%  Similarity=0.084  Sum_probs=44.7

Q ss_pred             EEEEEEEeCCCccCcccc----ccccc--CCCcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           53 TVNLGLWDTAGQEDYNRL----RPLSY--RGADVFLLAFSLIS-KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~----~~~~~--~~~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      .+.+.++|+||.......    +...+  .+.+-.++|+|++. .....    .+...+..   -.+-=+|.||.|....
T Consensus       154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~----~~~~~f~~---~~~~~~I~TKlDet~~  226 (270)
T PRK06731        154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI----EIITNFKD---IHIDGIVFTKFDETAS  226 (270)
T ss_pred             CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHH----HHHHHhCC---CCCCEEEEEeecCCCC
Confidence            367789999997543211    11111  24567899999863 32232    22223332   2233567899999654


Q ss_pred             cccccCCCCCccccHHHHHHHHHHcCCC
Q 029144          126 KQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                      ..              .+..++...+.|
T Consensus       227 ~G--------------~~l~~~~~~~~P  240 (270)
T PRK06731        227 SG--------------ELLKIPAVSSAP  240 (270)
T ss_pred             cc--------------HHHHHHHHHCcC
Confidence            32              455666666663

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.14  E-value=0.003  Score=49.59  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=18.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~   27 (198)
                      .--++++|+.|+||||++..+.
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA  227 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLG  227 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999996664

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.14  E-value=0.0022  Score=54.63  Aligned_cols=20  Identities=30%  Similarity=0.293  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 029144            8 KCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~   27 (198)
                      -|+++|+.|+||||.+..+.
T Consensus       187 Vi~lVGpnGvGKTTTiaKLA  206 (767)
T PRK14723        187 VLALVGPTGVGKTTTTAKLA  206 (767)
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58999999999999996665

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.13  E-value=0.0021  Score=40.92  Aligned_cols=82  Identities=16%  Similarity=0.199  Sum_probs=46.6

Q ss_pred             EEEEC-CCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144            9 CVTVG-DGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   87 (198)
Q Consensus         9 i~vvG-~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (198)
                      |++.| ..|+||||+...+...-.... .++.      .+..+ ..+.+.++|+|+....  .....+..+|.++++++.
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~-~~vl------~~d~d-~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~   71 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRG-KRVL------LIDLD-PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP   71 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCC-CcEE------EEeCC-CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence            56777 558999999855543211010 0111      00011 1156779999986432  223566779999999986


Q ss_pred             CChhhHHHHHHHHHH
Q 029144           88 ISKASYENVAKKWIP  102 (198)
Q Consensus        88 ~~~~s~~~~~~~~~~  102 (198)
                      + ..++... ..+++
T Consensus        72 ~-~~s~~~~-~~~~~   84 (104)
T cd02042          72 S-PLDLDGL-EKLLE   84 (104)
T ss_pred             C-HHHHHHH-HHHHH
Confidence            4 4556555 44444

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.13  E-value=0.00042  Score=50.74  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |.++|++|||||||++-+.+-
T Consensus        32 vsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999877654

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.12  E-value=0.00049  Score=46.52  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .|+|+|+.|+|||||++.+++.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888764

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.10  E-value=0.00047  Score=46.20  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++|+|+.|+|||||++.+.+..
T Consensus        13 ~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   13 IVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEEEccCCCccccceeeecccc
Confidence            68999999999999998777653

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.09  E-value=0.00055  Score=47.91  Aligned_cols=26  Identities=19%  Similarity=0.308  Sum_probs=22.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      +-.-+++.|++|+|||||++.++...
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc
Confidence            34568999999999999999998764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.08  E-value=0.00047  Score=50.10  Aligned_cols=22  Identities=23%  Similarity=0.220  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++|++|||||||++-+-.-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999866543

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.08  E-value=0.0005  Score=45.34  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999877754

...

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.07  E-value=0.0041  Score=43.75  Aligned_cols=82  Identities=23%  Similarity=0.286  Sum_probs=56.6

Q ss_pred             eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC
Q 029144           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD  131 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  131 (198)
                      ..+.+.++|+|+...-  .....+..+|.+++++..+ ..+.... ..+.+.+...  +.|+.+|+|++|....      
T Consensus        91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~-~~~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~~------  158 (179)
T cd03110          91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPT-PSGLHDL-ERAVELVRHF--GIPVGVVINKYDLNDE------  158 (179)
T ss_pred             cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCC-cccHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCcc------
Confidence            3467889999976322  2234567899999999876 3455555 5666666655  6788999999987542      


Q ss_pred             CCCCccccHHHHHHHHHHcCC
Q 029144          132 HPGAVPITTAQGEELRKLIGA  152 (198)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~  152 (198)
                             ...+..++.+..+.
T Consensus       159 -------~~~~~~~~~~~~~~  172 (179)
T cd03110         159 -------IAEEIEDYCEEEGI  172 (179)
T ss_pred             -------hHHHHHHHHHHcCC
Confidence                   23456667777777

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.06  E-value=0.0003  Score=54.71  Aligned_cols=85  Identities=12%  Similarity=0.045  Sum_probs=51.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEE-EECCeEEEEEEEeCCCccCc--ccccccccCCCc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-VVDGSTVNLGLWDTAGQEDY--NRLRPLSYRGAD   79 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~i~D~~G~~~~--~~~~~~~~~~~~   79 (198)
                      ..+.+-|.+||.|++||||+||.|........ .|..++.-...+ ++-   -.+-++|+||.---  .+.....+   -
T Consensus       304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkv-APIpGETKVWQYItLm---krIfLIDcPGvVyps~dset~ivL---k  376 (572)
T KOG2423|consen  304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKV-APIPGETKVWQYITLM---KRIFLIDCPGVVYPSSDSETDIVL---K  376 (572)
T ss_pred             CccceeeeeecCCCCchHHHHHHHhhcccccc-cCCCCcchHHHHHHHH---hceeEecCCCccCCCCCchHHHHh---h
Confidence            45788999999999999999999998765432 233322211110 010   23459999995221  22222333   3


Q ss_pred             EEEEEEECCChhhHH
Q 029144           80 VFLLAFSLISKASYE   94 (198)
Q Consensus        80 ~~i~v~d~~~~~s~~   94 (198)
                      +++-|=.+.+++.+-
T Consensus       377 GvVRVenv~~pe~yi  391 (572)
T KOG2423|consen  377 GVVRVENVKNPEDYI  391 (572)
T ss_pred             ceeeeeecCCHHHHH
Confidence            567777778876543

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.05  E-value=0.0006  Score=45.89  Aligned_cols=22  Identities=23%  Similarity=0.274  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999877643

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.05  E-value=0.00061  Score=45.88  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |+++|++|+|||||++.+...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999988864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.04  E-value=0.0007  Score=52.28  Aligned_cols=95  Identities=22%  Similarity=0.151  Sum_probs=62.3

Q ss_pred             EeCCCcc-CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCcc
Q 029144           59 WDTAGQE-DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVP  137 (198)
Q Consensus        59 ~D~~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  137 (198)
                      -+.||+. .+.......+..+|+++-|+|+.++.+....      .+.....+.|.++|+||+|+.+..           
T Consensus        15 ~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~------~l~~~v~~k~~i~vlNK~DL~~~~-----------   77 (322)
T COG1161          15 QWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP------ELERIVKEKPKLLVLNKADLAPKE-----------   77 (322)
T ss_pred             cCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc------cHHHHHccCCcEEEEehhhcCCHH-----------
Confidence            3446653 4455556677889999999999998765543      333334466779999999997754           


Q ss_pred             ccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHH
Q 029144          138 ITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD  171 (198)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  171 (198)
                      +.....+.+....+. ..+.+++..+.+...+..
T Consensus        78 ~~~~W~~~~~~~~~~-~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          78 VTKKWKKYFKKEEGI-KPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             HHHHHHHHHHhcCCC-ccEEEEeecccCccchHH
Confidence            333334444444444 456678887777666664

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.04  E-value=0.00063  Score=48.29  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .|+++|++|+|||||++.+...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999988654

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.03  E-value=0.012  Score=46.67  Aligned_cols=81  Identities=23%  Similarity=0.131  Sum_probs=44.6

Q ss_pred             EEEEEEEeCCCccCccc----ccccccCC--Cc-EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           53 TVNLGLWDTAGQEDYNR----LRPLSYRG--AD-VFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~----~~~~~~~~--~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      .+.+.++||+|......    .....+..  .+ -.++|+|++..  ..++ .   ..+..+..--+-=+|.||.|....
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~-~---~~~~~~~~~~~~~~I~TKlDet~~  327 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDV-K---EIFHQFSPFSYKTVIFTKLDETTC  327 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHH-H---HHHHHhcCCCCCEEEEEeccCCCc
Confidence            46788999999654321    11112221  23 57899999765  2222 2   233333211234567899999654


Q ss_pred             cccccCCCCCccccHHHHHHHHHHcCCC
Q 029144          126 KQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                      .              -.+..++...+.|
T Consensus       328 ~--------------G~~l~~~~~~~~P  341 (388)
T PRK12723        328 V--------------GNLISLIYEMRKE  341 (388)
T ss_pred             c--------------hHHHHHHHHHCCC
Confidence            3              2455666666664

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.03  E-value=0.00063  Score=47.91  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++|+|++||||||+++.+...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999988664

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.02  E-value=0.0029  Score=41.61  Aligned_cols=23  Identities=22%  Similarity=0.201  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      --|++-|+-|+|||||++.+...
T Consensus        16 ~vi~L~GdLGaGKTtf~r~l~~~   38 (123)
T PF02367_consen   16 DVILLSGDLGAGKTTFVRGLARA   38 (123)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35899999999999999988764

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK13949 shikimate kinase; Provisional

Probab=97.02  E-value=0.0007  Score=47.31  Aligned_cols=21  Identities=24%  Similarity=0.229  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      +|+++|++|+||||+.+.+..
T Consensus         3 ~I~liG~~GsGKstl~~~La~   23 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALAR   23 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999987764

>PRK14532 adenylate kinase; Provisional

Probab=97.02  E-value=0.00061  Score=48.37  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ++|+++|+||+||||+..++...
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999888643

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.00  E-value=0.00069  Score=43.35  Aligned_cols=21  Identities=24%  Similarity=0.506  Sum_probs=18.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q 029144            7 IKCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~   27 (198)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            358999999999999998865

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK00625 shikimate kinase; Provisional

Probab=96.99  E-value=0.00072  Score=47.42  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      +|+++|.+|+||||+.+.+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999987754

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.97  E-value=0.0007  Score=47.92  Aligned_cols=22  Identities=18%  Similarity=0.075  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      --|+++|++||||||+++.+..
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999988874

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK01889 GTPase RsgA; Reviewed

Probab=96.96  E-value=0.0011  Score=51.97  Aligned_cols=24  Identities=17%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -.++++|.+|+|||||++.+.+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~  219 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE  219 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc
Confidence            378999999999999999998653

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.93  E-value=0.00081  Score=47.35  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -|+++|++|+|||||++.+...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4899999999999999988864

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PLN02674 adenylate kinase

Probab=96.93  E-value=0.001  Score=49.20  Aligned_cols=26  Identities=12%  Similarity=0.056  Sum_probs=22.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .....+|+++|+||+||+|+..++..
T Consensus        28 ~~~~~~i~l~G~PGsGKgT~a~~La~   53 (244)
T PLN02674         28 SKPDKRLILIGPPGSGKGTQSPIIKD   53 (244)
T ss_pred             cccCceEEEECCCCCCHHHHHHHHHH
Confidence            34468899999999999999988865

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.91  E-value=0.003  Score=42.19  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -|++.|+.|+|||||++.+...
T Consensus        24 ~i~l~G~lGaGKTtl~~~l~~~   45 (133)
T TIGR00150        24 VVLLKGDLGAGKTTLVQGLLQG   45 (133)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999988865

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.91  E-value=0.0012  Score=46.20  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -+|+++|++|+||||+.+.+...
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~   27 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999888643

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.90  E-value=0.0012  Score=47.48  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      --|+++|++|+|||||++.+...
T Consensus         6 ~~i~i~G~sGsGKstl~~~l~~~   28 (205)
T PRK00300          6 LLIVLSGPSGAGKSTLVKALLER   28 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35899999999999999888764

>PRK08233 hypothetical protein; Provisional

Probab=96.89  E-value=0.0012  Score=46.53  Aligned_cols=24  Identities=17%  Similarity=0.012  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+-|++.|.+|+|||||.+++...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            467888999999999999988754

>PRK14531 adenylate kinase; Provisional

Probab=96.89  E-value=0.0011  Score=46.99  Aligned_cols=22  Identities=14%  Similarity=0.172  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .+|+++|+||+||||+...+..
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~   24 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCA   24 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988754

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.88  E-value=0.0011  Score=46.69  Aligned_cols=21  Identities=19%  Similarity=0.248  Sum_probs=18.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q 029144            7 IKCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~   27 (198)
                      -.++++|+.|+|||||++.+.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            478999999999999998775

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK04195 replication factor C large subunit; Provisional

Probab=96.87  E-value=0.012  Score=48.22  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=21.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .-.+++.|++|+||||+++.+....
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el   63 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDY   63 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3468999999999999999887653

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=96.87  E-value=0.0032  Score=40.39  Aligned_cols=61  Identities=21%  Similarity=0.169  Sum_probs=40.1

Q ss_pred             EEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-C-CCCEEEEeec
Q 029144           55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-P-GVPIILVGTK  119 (198)
Q Consensus        55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~p~iiv~nK  119 (198)
                      .+.++|+|+...  ......+..+|.++++.+. +..+.... ..+.+.++... + ...+.+|+|+
T Consensus        44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~-~~~s~~~~-~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQ-DLPSIRNA-KRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecC-ChHHHHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence            567999998643  2233466789999999875 45556666 56666666543 2 3566677774

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.87  E-value=0.00089  Score=47.11  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=16.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .-.++|.|++|+|||+|++++..
T Consensus        24 ~~~~ll~G~~G~GKT~ll~~~~~   46 (185)
T PF13191_consen   24 PRNLLLTGESGSGKTSLLRALLD   46 (185)
T ss_dssp             ---EEE-B-TTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999987764

>PHA00729 NTP-binding motif containing protein

Probab=96.86  E-value=0.0012  Score=47.97  Aligned_cols=25  Identities=24%  Similarity=0.441  Sum_probs=21.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ...+|++.|.||+|||+|..++...
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999887654

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.86  E-value=0.00092  Score=47.57  Aligned_cols=22  Identities=14%  Similarity=0.188  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +|+|+|++|+||||+...+...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999888754

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.85  E-value=0.001  Score=47.60  Aligned_cols=21  Identities=19%  Similarity=0.177  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |.|.|++|||||||++.+...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999888654

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=96.85  E-value=0.0011  Score=46.88  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |+++|+|||||||+..++...
T Consensus         2 i~i~G~pGsGKst~a~~la~~   22 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVEN   22 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999888653

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.85  E-value=0.0012  Score=46.91  Aligned_cols=25  Identities=20%  Similarity=0.171  Sum_probs=21.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .-.++++|+.|+||||+++.+.+..
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3469999999999999999887643

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK02496 adk adenylate kinase; Provisional

Probab=96.85  E-value=0.0012  Score=46.78  Aligned_cols=22  Identities=14%  Similarity=0.261  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .+|+++|++|+||||+...+..
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~   23 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAE   23 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999988764

>PLN02200 adenylate kinase family protein

Probab=96.84  E-value=0.0015  Score=48.08  Aligned_cols=24  Identities=13%  Similarity=0.051  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .++.|+++|.||+||||+..++..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988864

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.83  E-value=0.001  Score=48.38  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -|+++|++|+|||||++.+-+
T Consensus        32 ~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            589999999999999987765

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=96.83  E-value=0.0024  Score=49.06  Aligned_cols=26  Identities=19%  Similarity=0.147  Sum_probs=22.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF   31 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~   31 (198)
                      ..+|++.|..|+|||||+|.+..-..
T Consensus       173 r~NILisGGTGSGKTTlLNal~~~i~  198 (355)
T COG4962         173 RCNILISGGTGSGKTTLLNALSGFID  198 (355)
T ss_pred             ceeEEEeCCCCCCHHHHHHHHHhcCC
Confidence            36899999999999999999987643

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=96.82  E-value=0.009  Score=46.81  Aligned_cols=89  Identities=17%  Similarity=0.102  Sum_probs=63.5

Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      +..+|++|-|+|+.||-.-.-  ...-..+....+-..+++|+||+||.+.-           +......-+..++.. .
T Consensus       211 iDSSDVvvqVlDARDPmGTrc--~~ve~ylkke~phKHli~vLNKvDLVPtw-----------vt~~Wv~~lSkeyPT-i  276 (572)
T KOG2423|consen  211 IDSSDVVVQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIYVLNKVDLVPTW-----------VTAKWVRHLSKEYPT-I  276 (572)
T ss_pred             hcccceeEEeeeccCCccccc--HHHHHHHhhcCCcceeEEEeeccccccHH-----------HHHHHHHHHhhhCcc-e
Confidence            456899999999999864321  23334556666789999999999998764           566777788888876 4


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHH
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      .|..|..+..|--.+++.+-+..
T Consensus       277 AfHAsi~nsfGKgalI~llRQf~  299 (572)
T KOG2423|consen  277 AFHASINNSFGKGALIQLLRQFA  299 (572)
T ss_pred             eeehhhcCccchhHHHHHHHHHH
Confidence            66778777677666665555533

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.81  E-value=0.0012  Score=47.42  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHhhCC
Q 029144            9 CVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~~   30 (198)
                      |++.|++|+||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999998877653

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR01351 adk adenylate kinases

Probab=96.80  E-value=0.001  Score=48.17  Aligned_cols=21  Identities=19%  Similarity=0.203  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      +|+|+|++||||||+...+..
T Consensus         1 rI~i~G~pGsGKsT~a~~La~   21 (210)
T TIGR01351         1 RLVLLGPPGSGKGTQAKRIAE   21 (210)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988764

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.80  E-value=0.0012  Score=49.09  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++|+.|+|||||++.+.+-
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            3689999999999999888763

>PF13173 AAA_14: AAA domain

Probab=96.80  E-value=0.0013  Score=43.61  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTF   31 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~   31 (198)
                      -+++.|+.++||||++.++.....
T Consensus         4 ~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            478999999999999998887654

>PRK06547 hypothetical protein; Provisional

Probab=96.79  E-value=0.0017  Score=45.55  Aligned_cols=26  Identities=19%  Similarity=0.279  Sum_probs=22.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .....|+|.|.+|+||||+.+.+...
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            45678899999999999999888754

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.78  E-value=0.0012  Score=43.71  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=18.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      --+++.|++|+|||++++++...
T Consensus         5 ~~~~i~G~~G~GKT~~~~~~~~~   27 (131)
T PF13401_consen    5 RILVISGPPGSGKTTLIKRLARQ   27 (131)
T ss_dssp             --EEEEE-TTSSHHHHHHHHHHH
T ss_pred             cccEEEcCCCCCHHHHHHHHHHH
Confidence            35789999999999999988865

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=96.76  E-value=0.0043  Score=47.03  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=23.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      +.-+++++|++|.|||+++++|....
T Consensus        60 Rmp~lLivG~snnGKT~Ii~rF~~~h   85 (302)
T PF05621_consen   60 RMPNLLIVGDSNNGKTMIIERFRRLH   85 (302)
T ss_pred             CCCceEEecCCCCcHHHHHHHHHHHC
Confidence            45689999999999999999999764

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.75  E-value=0.0013  Score=50.83  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhhCC
Q 029144            9 CVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~~   30 (198)
                      ++++|++||||||+++-+-+-.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999998776543

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.74  E-value=0.0019  Score=45.39  Aligned_cols=26  Identities=15%  Similarity=0.029  Sum_probs=21.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+..-|++.|.+|+||||+.+.+...
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~   30 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYER   30 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            45678999999999999999877643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		4e-97
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		3e-94
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-92
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-82
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-62
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		3e-62
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		3e-62
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		3e-62
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		3e-62
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		4e-62
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		4e-62
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-62
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		7e-62
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-61
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		3e-61
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-61
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-61
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-61
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		3e-61
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-61
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		4e-61
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		4e-61
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-61
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		4e-61
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		4e-61
1mh1_A	186	Small G-Protein Length = 186		4e-61
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		4e-61
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		5e-61
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-61
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		6e-61
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		3e-60
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		6e-60
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		1e-59
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		3e-54
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		4e-54
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-53
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		2e-53
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		3e-53
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		3e-53
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		3e-53
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		3e-53
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		3e-53
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		3e-53
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		3e-53
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		3e-53
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		4e-53
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		4e-53
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		4e-53
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		5e-53
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		6e-53
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		8e-53
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		8e-53
2kb0_A	178	Cdc42(T35a) Length = 178		1e-52
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		2e-52
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		3e-52
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		3e-52
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		3e-52
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		3e-50
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		4e-47
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		4e-47
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		4e-47
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-47
1s1c_A	183	Crystal Structure Of The Complex Between The Human		5e-47
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		5e-47
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		5e-47
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-46
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		1e-46
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-46
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		1e-46
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		2e-46
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		2e-46
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-46
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-46
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		3e-46
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		3e-46
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		4e-46
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		6e-46
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-45
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-41
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-38
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		3e-38
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-32
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		5e-32
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		9e-32
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		4e-28
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		4e-28
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		4e-28
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		7e-21
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-20
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-20
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-20
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		2e-20
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-20
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-20
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-20
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-20
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-20
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-20
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-20
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		3e-20
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-20
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		4e-20
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		4e-20
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		4e-20
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-20
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		5e-20
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		5e-20
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		5e-20
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		5e-20
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		6e-20
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		7e-20
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		8e-20
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		9e-20
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		9e-20
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-19
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-19
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-19
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-19
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-19
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-19
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		3e-19
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		4e-19
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		4e-19
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		4e-19
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		6e-19
2efc_B	181	Ara7-GdpATVPS9A Length = 181		6e-19
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		6e-19
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		8e-19
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		9e-19
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		9e-19
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-18
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-18
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-18
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-18
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-18
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		2e-18
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		2e-18
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-18
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-18
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		4e-18
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		5e-18
1wq1_R	166	Ras-Rasgap Complex Length = 166		6e-18
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-18
6q21_A	171	Molecular Switch For Signal Transduction: Structura		7e-18
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		7e-18
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		7e-18
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		7e-18
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		8e-18
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		8e-18
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		8e-18
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		9e-18
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		9e-18
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		9e-18
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		9e-18
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-17
4q21_A	189	Molecular Switch For Signal Transduction: Structura		1e-17
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-17
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-17
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		1e-17
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		1e-17
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		2e-17
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-17
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-17
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		2e-17
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-17
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		2e-17
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		2e-17
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-17
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-17
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-17
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-17
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-17
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-17
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-17
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		3e-17
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		4e-17
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		4e-17
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		5e-17
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		7e-17
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		7e-17
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		7e-17
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-17
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		7e-17
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		7e-17
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		7e-17
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		7e-17
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		8e-17
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		8e-17
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		8e-17
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		8e-17
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		8e-17
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		9e-17
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		9e-17
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		9e-17
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		9e-17
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-16
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-16
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-16
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-16
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-16
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-16
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-16
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-16
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-16
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-16
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-16
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-16
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		2e-16
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		3e-16
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		3e-16
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		3e-16
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		3e-16
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		3e-16
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		5e-16
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		5e-16
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		6e-16
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		8e-16
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		8e-16
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		9e-16
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		1e-15
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-15
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-15
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-15
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		3e-15
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-15
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		4e-15
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		8e-15
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		8e-15
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		9e-15
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		9e-15
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-14
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-14
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		1e-14
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-14
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		4e-14
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		8e-14
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-13
1byu_A	216	Canine Gdp-Ran Length = 216		1e-13
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		1e-13
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-13
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		4e-13
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		4e-13
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		5e-13
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		5e-13
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		5e-13
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		6e-13
1vg1_A	185	Gdp-bound Rab7 Length = 185		6e-13
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		9e-13
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-12
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		1e-12
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-12
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-12
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-12
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-12
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		1e-12
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-12
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-12
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		4e-12
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		5e-12
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-12
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		6e-12
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		9e-12
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-11
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-11
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-11
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-11
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-11
3icq_B	171	Karyopherin Nuclear State Length = 171		2e-11
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		3e-11
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-10
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		6e-10
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		7e-10
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-09
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		2e-09
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		8e-09
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		9e-09
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		1e-08
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		1e-08
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		2e-08
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		2e-08
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-08
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-07
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		2e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		4e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		1e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		1e-05
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		1e-05
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		4e-05
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		4e-05
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		5e-05
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		6e-05
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		5e-04

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score =  349 bits (896), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 166/174 (95%), Positives = 171/174 (98%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           DLRDDKQF  DHPGAVPITT QGEEL+KLIG+P+YIECSSKTQQNVKAVFDAAI
Sbjct: 121 DLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAI 174

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score =  340 bits (872), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 159/174 (91%), Positives = 169/174 (97%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122
Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           DLRDDKQF  DHPGAVPITT QGEEL+KLIGAP YIECSSK+Q+NVK VFDAAI
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 176

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score =  335 bits (858), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 157/174 (90%), Positives = 165/174 (94%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS +RFIKCVTVGDGAVGKTCMLISYT NTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN+ KKW+PEL+HYAPG+PI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120
Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           DLRDDKQFL DHPGA  ITTAQGEELRK+IGA  Y+ECSSKTQQNVKAVFD AI
Sbjct: 121 DLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score =  301 bits (771), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 144/174 (82%), Positives = 154/174 (88%), Gaps = 2/174 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS S+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG  VNLGLWD
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PELR +AP VPI+LVGTKL
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123
Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           DLRDDK +LADH     IT+ QGEELRK IGA  YIECSSKTQQNVKAVFD AI
Sbjct: 124 DLRDDKGYLADHTNV--ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score =  234 bits (597), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/170 (66%), Positives = 131/170 (77%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 23  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 142
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 143 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 192

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/170 (66%), Positives = 131/170 (77%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/170 (66%), Positives = 131/170 (77%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/170 (66%), Positives = 131/170 (77%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score =  233 bits (595), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/170 (66%), Positives = 131/170 (77%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score =  233 bits (595), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 113/170 (66%), Positives = 131/170 (77%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score =  233 bits (595), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 113/170 (66%), Positives = 131/170 (77%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score =  233 bits (594), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 113/170 (66%), Positives = 131/170 (77%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score =  233 bits (593), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 113/175 (64%), Positives = 132/175 (75%), Gaps = 2/175 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGK C+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 6   SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 65
Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLD
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 125
Query: 122 LRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           LRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 126 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 180

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score =  231 bits (589), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 130/170 (76%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N  P +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 130/170 (76%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 129/170 (75%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 123
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  L K I +  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 173

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score =  231 bits (588), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 130/170 (76%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score =  230 bits (587), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 130/170 (76%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV L+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 68  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 127
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 128 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 177

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score =  230 bits (587), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 130/170 (76%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV L+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score =  230 bits (587), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 130/170 (76%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N F  +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 133
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 134 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 183

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score =  230 bits (587), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/171 (66%), Positives = 134/171 (78%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + L D   A PIT  QG  + + IG+  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 DTIERLRDKKLA-PITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 173

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score =  230 bits (587), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 130/170 (76%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 31  IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 151 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score =  230 bits (587), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 130/170 (76%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV L+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 123
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score =  230 bits (587), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 130/170 (76%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG ED
Sbjct: 7   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 126
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 127 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 176

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score =  230 bits (586), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/171 (66%), Positives = 134/171 (78%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKLDLRDDK
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + L D   A PIT  QG  + + IG+  Y+ECS+ TQ+ +K VFD AI
Sbjct: 125 DTIERLRDKKLA-PITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score =  230 bits (586), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 130/170 (76%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV L+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 125
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 126 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score =  230 bits (586), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 113/171 (66%), Positives = 134/171 (78%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PI+LVGTKLDLRDDK
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDK 124
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + L D   A PIT  QG  + + IG+  Y+ECS+ TQ+ +K VFD AI
Sbjct: 125 DTIERLRDKKLA-PITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score =  229 bits (585), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 111/175 (63%), Positives = 131/175 (74%), Gaps = 2/175 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +A   IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AG EDY+RLRPLSY   DVFL+ FSL+S AS+ +V  KW PE+RH+ P  PIILVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           LRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score =  229 bits (585), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 111/175 (63%), Positives = 131/175 (74%), Gaps = 2/175 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +A   IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AG EDY+RLRPLSY   DVFL+ FSL+S AS+ +V  KW PE+RH+ P  PIILVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           LRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score =  229 bits (585), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 111/175 (63%), Positives = 131/175 (74%), Gaps = 2/175 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +A   IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDT
Sbjct: 151 AAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDT 210
Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AG EDY+RLRPLSY   DVFL+ FSL+S AS+ +V  KW PE+RH+ P  PIILVGTKLD
Sbjct: 211 AGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
Query: 122 LRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           LRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 271 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score =  227 bits (579), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 112/174 (64%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            S+ IKCV VGD AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTA
Sbjct: 6   GSQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTA 65
Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DVFL+ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDL
Sbjct: 66  GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 125
Query: 123 RDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           RDDK  +         PIT  QG  L K I +  Y+ECS+ TQ+ +K VFD AI
Sbjct: 126 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 179

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score =  226 bits (576), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 111/170 (65%), Positives = 128/170 (75%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGD AVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VD   VNLGLWDTAGQED
Sbjct: 11  IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FSL+S ASYENV  KW PE+RH+ P  PIILVGTKLDLRDDK
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDK 130
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
             +         PIT  QG  L K I +  Y+ECS+ TQ+ +K VFD AI
Sbjct: 131 DTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAI 180

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score =  225 bits (573), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 116/189 (61%), Positives = 134/189 (70%), Gaps = 21/189 (11%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 67  YNRLRPLSY--------------RG-----ADVFLLAFSLISKASYENVAKKWIPELRHY 107
           Y+RLRPLSY              RG     ADVFL+ FSL+S AS+ENV  KW PE+RH+
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRHH 125
Query: 108 APGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN 165
            P  PIILVGTKLDLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ 
Sbjct: 126 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 185
Query: 166 VKAVFDAAI 174
           +K VFD AI
Sbjct: 186 LKTVFDEAI 194

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score =  207 bits (527), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 130/171 (76%), Gaps = 2/171 (1%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE 65
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQE
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           DY+RLRPLSY   DVFL+ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DLRDD
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137
Query: 126 KQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
            + LA  +     PI   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score =  207 bits (526), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 99/177 (55%), Positives = 132/177 (74%), Gaps = 4/177 (2%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           +SA + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+D
Sbjct: 5   ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFD 64
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++
Sbjct: 65  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 124
Query: 121 DLRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           DLRDD    + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 125 DLRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score =  204 bits (520), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/175 (56%), Positives = 130/175 (74%), Gaps = 4/175 (2%)
Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            S+ IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTA
Sbjct: 4   GSQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 63
Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DL
Sbjct: 64  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 123
Query: 123 RDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           RDD    + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 RDDPSTIEKLAKNKQK-PITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 130/176 (73%), Gaps = 4/176 (2%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 62  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           LRDD    + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 122 LRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 130/176 (73%), Gaps = 4/176 (2%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 1   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 60
Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 61  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 120
Query: 122 LRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           LRDD    + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 121 LRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 128/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 5   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 124
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 125 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 174

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 130/176 (73%), Gaps = 4/176 (2%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 61
Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 62  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 121
Query: 122 LRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           LRDD    + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 122 LRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 176

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score =  204 bits (519), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 128/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 128/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 128/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 128/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 14  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 133
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 134 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 183

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 128/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 STIEKLAKNKQK-PITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 128/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 STIEKLAKNKQK-PITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 128/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 125
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 126 STIEKLAKNKQK-PITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score =  203 bits (517), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 128/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 STIEKLAKNKQK-PITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score =  203 bits (516), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 128/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 STIEKLAKNKQK-PITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score =  203 bits (516), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 127/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V + G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score =  202 bits (515), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 97/176 (55%), Positives = 129/176 (73%), Gaps = 4/176 (2%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S  + IKCV VGDGAVGK C+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DT
Sbjct: 6   SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT 65
Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++D
Sbjct: 66  AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID 125
Query: 122 LRDDK---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           LRDD    + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 126 LRDDPSTIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 180

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score =  202 bits (515), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 97/171 (56%), Positives = 127/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 STIEKLAKNKQK-PITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 127/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVP VFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 STIEKLAKNKQK-PITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 127/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N  P++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 STIEKLAKNKQK-PITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 127/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAG ED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 127/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGD AVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 124 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score =  201 bits (510), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 127/171 (74%), Gaps = 4/171 (2%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAG ED
Sbjct: 8   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 127
Query: 127 ---QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
              + LA +    PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct: 128 STIEKLAKN-KQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score =  194 bits (493), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/170 (54%), Positives = 125/170 (73%), Gaps = 2/170 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ++
Sbjct: 21  VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +++LRPL Y   D+FLL FS++S +S++NV++KW+PE+R + P  PIILVGT+ DLR+D 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 127 QFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           + L   D     P+     + L + I A  YIECS+ TQ+N+K VFDAAI
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAI 190

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score =  184 bits (466), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 89/174 (51%), Positives = 118/174 (67%), Gaps = 2/174 (1%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           SA+   K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDT
Sbjct: 5   SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT 64
Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K D
Sbjct: 65  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD 124
Query: 122 LRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           LR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 178

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score =  183 bits (465), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 119/175 (68%), Gaps = 3/175 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score =  183 bits (465), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 119/175 (68%), Gaps = 3/175 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 3   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 62  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 121
Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score =  183 bits (465), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 119/175 (68%), Gaps = 3/175 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 2   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 61  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 120
Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 175

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score =  183 bits (465), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 119/175 (68%), Gaps = 3/175 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 3   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 62  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 121
Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score =  183 bits (465), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 119/175 (68%), Gaps = 3/175 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 3   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 62  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 121
Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 176

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score =  183 bits (465), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 119/175 (68%), Gaps = 3/175 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 4   MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 62
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 63  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 122
Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 123 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 177

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 115/168 (68%), Gaps = 2/168 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR D+ 
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEH 146
Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
              +       P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 194

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 115/168 (68%), Gaps = 2/168 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 86
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR D+ 
Sbjct: 87  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146
Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
              +       P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A
Sbjct: 147 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 194

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 115/168 (68%), Gaps = 2/168 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  +   FP  YVPTVF+N+ A+V VDG  V L LWDTAGQEDY
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDY 71
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY  ++V L+ FS+    S ENV +KWI E+ H+  GVPIILVG K+DLR+D Q
Sbjct: 72  DRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQ 131
Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
            +      G  P+T+ +G+ +   IGA  Y ECS+KT   V+ VF+AA
Sbjct: 132 TIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAA 179

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 118/175 (67%), Gaps = 3/175 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIR-KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 118/175 (67%), Gaps = 3/175 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIR-KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score =  182 bits (461), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 118/175 (67%), Gaps = 3/175 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIR-KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 60  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 114/168 (67%), Gaps = 2/168 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+ 
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
              +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 172

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/168 (51%), Positives = 114/168 (67%), Gaps = 2/168 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 64
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+ 
Sbjct: 65  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 124
Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
              +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 125 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 172

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 114/168 (67%), Gaps = 2/168 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDY 66
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR D+ 
Sbjct: 67  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 126
Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
              +       P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A
Sbjct: 127 TRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMA 174

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score =  181 bits (458), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 113/168 (67%), Gaps = 2/168 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY   DV L+ FS+ S  S EN+ +KW+PE++H+ P VPIILV  K DLR D+ 
Sbjct: 87  DRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH 146
Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
              +       P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A
Sbjct: 147 VRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETA 194

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score =  180 bits (457), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/175 (50%), Positives = 118/175 (67%), Gaps = 3/175 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGD A GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 2   MAAIR-KKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWD 60
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 61  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 120
Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           DLR+D+    +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 175

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score =  179 bits (455), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 89/175 (50%), Positives = 118/175 (67%), Gaps = 3/175 (1%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGD A GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 1   MAAIR-KKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWD 59
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+R RPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 60  TAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 119
Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           DLR+D+    +       P+  A+G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 120 DLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 174

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score =  178 bits (451), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 86/168 (51%), Positives = 113/168 (67%), Gaps = 2/168 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAG EDY
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 69
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           +RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+ 
Sbjct: 70  DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEH 129
Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
              +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A
Sbjct: 130 TRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 177

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/171 (45%), Positives = 107/171 (62%), Gaps = 2/171 (1%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124
           +DY+RLRPL Y  A V LL F + S  S++N+  +W PE+ H+   VPII+VG K DLR 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 125 DKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           DK  +      G  P+T  +G+E+ + +GA  Y+ECS++   NV AVF  A
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEA 203

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 111/173 (64%), Gaps = 8/173 (4%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +  + +K V VGDGAVGKTC+L++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 18  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 77
Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQE+Y+RLRPLSY  +DV LL F++ ++ S++N++ KW PE++HY      +LVG K+D
Sbjct: 78  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137
Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           LR D        G+  +T  +G++L + +G   YIE SS  +  +  VF+ ++
Sbjct: 138 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 182

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score =  154 bits (389), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 111/173 (64%), Gaps = 8/173 (4%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +  + +K V VGDGAVGKTC+L++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78
Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQE+Y+RLRPLSY  +DV LL F++ ++ S++N++ KW PE++HY      +LVG K+D
Sbjct: 79  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138
Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           LR D        G+  +T  +G++L + +G   YIE SS  +  +  VF+ ++
Sbjct: 139 LRKD--------GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 183

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
Query: 1   MSASRFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL 58
           M  ++ +KC  V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L L
Sbjct: 16  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 75
Query: 59  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT 118
           WDT+G   Y+ +RPLSY  +D  L+ F +    + ++V KKW  E++ + P   ++LVG 
Sbjct: 76  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 135
Query: 119 KLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSS-KTQQNVKAVFDAA 173
           K DLR D   L +  +    P++  QG  + K IGA  YIECS+ +++ +V+ +F  A
Sbjct: 136 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 193

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score =  133 bits (335), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 106/178 (59%), Gaps = 5/178 (2%)
Query: 1   MSASRFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL 58
           M  ++ +KC  V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L L
Sbjct: 21  MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSL 80
Query: 59  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGT 118
           WDT+G   Y+ +RPLSY  +D  L+ F +    + ++V KKW  E++ + P   ++LVG 
Sbjct: 81  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGC 140
Query: 119 KLDLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSS-KTQQNVKAVFDAA 173
           K DLR D   L +  +    P++  QG  + K IGA  YIECS+ +++ +V+ +F  A
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 198

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score =  132 bits (333), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 106/176 (60%), Gaps = 5/176 (2%)
Query: 3   ASRFIKC--VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           +++ +KC  V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWD
Sbjct: 2   SNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           T+G   Y+ +RPLSY  +D  L+ F +    + ++V KKW  E++ + P   ++LVG K 
Sbjct: 62  TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKS 121
Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSS-KTQQNVKAVFDAA 173
           DLR D   L +  +    P++  QG  + K IGA  YIECS+ +++ +V+ +F  A
Sbjct: 122 DLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 177

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 72
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPL Y  +D  LL F +    + ++  KKW  E+  Y P   ++L+G K DLR D  
Sbjct: 73  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 132
Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKT-QQNVKAVFDAA 173
            L +  H    PI+  QG  + K +GA +Y+E S+ T ++++ ++F  A
Sbjct: 133 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 181

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 88
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPL Y  +D  LL F +    + ++  KKW  E+  Y P   ++L+G K DLR D  
Sbjct: 89  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 148
Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKT-QQNVKAVFDAA 173
            L +  H    PI+  QG  + K +GA +Y+E S+ T ++++ ++F  A
Sbjct: 149 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 197

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score =  120 bits (302), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT+G   Y
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYY 71
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
           + +RPL Y  +D  LL F +    + ++  KKW  E+  Y P   ++L+G K DLR D  
Sbjct: 72  DNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLS 131
Query: 128 FLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKT-QQNVKAVFDAA 173
            L +  H    PI+  QG  + K +GA +Y+E S+ T ++++ ++F  A
Sbjct: 132 TLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTA 180

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 96.7 bits (239), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 18/177 (10%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S  +K + +GDG VGK+ ++  Y +N F +    T+   F + ++ VDG  V L +WDTA
Sbjct: 5   SLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTA 64
Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRGAD  LL FS+  + S+EN+   W  E  +YA        P +++G
Sbjct: 65  GQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLG-NWQKEFIYYADVKDPEHFPFVVLG 123
Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
            K+D ++D+Q          +TT + +      G   Y+E S+K   NV   F+ A+
Sbjct: 124 NKVD-KEDRQ----------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAV 169

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                    A  + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                    A  + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   ++ + +  + SY NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 128 TKK--------VVDNTTAK--EFADSLGIP-FLETSAKNATNVEQAF 163

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAGQ
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y R+    YRGA   LL + +    +YENV ++W+ ELR +A   + I+LVG K DLR
Sbjct: 65  ERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 123
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +  +    +IE S+    NV+  F
Sbjct: 124 --------HLRAVPTDEARAFAEKNNLS---FIETSALDSTNVEEAF 159

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/167 (34%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   ++ + +  + SY NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIVVYDVTDQESYANV-KQWLQEIDRYASENVNKLLVGNKSDLT 127
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 128 TKK--------VVDNTTAK--EFADSLGIP-FLETSAKNATNVEQAF 163

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 17/167 (10%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAG EDY
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + FLL FS+    S+   A  ++ I  ++     +P+++VG K DL + 
Sbjct: 69  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 128
Query: 126 KQFLADHPGAVPITTA--QGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +Q        VP+  A  + EE         Y+E S+KT+ NV  VF
Sbjct: 129 RQ--------VPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 162

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 17/167 (10%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAG EDY
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + FLL FS+    S+   A  ++ I  ++     +P+++VG K DL + 
Sbjct: 65  AAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEER 124
Query: 126 KQFLADHPGAVPITTA--QGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +Q        VP+  A  + EE         Y+E S+KT+ NV  VF
Sbjct: 125 RQ--------VPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 158

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 59/169 (34%), Positives = 90/169 (53%), Gaps = 15/169 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
            K + VGD  VGKTC+L+ +    F    ++ TV  +F   V+ VDG  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLR 123
           E +  +    YR A   LL + + +KAS++N+ + W+ E+  YA   V ++L+G K+D  
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            ++           +    GE+L K  G P ++E S+KT  NV   F A
Sbjct: 130 HER----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTA 167

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                    A  + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 121 --------AARTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE 
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL   
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 120 K--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 153

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 125 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 18/177 (10%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +N F T    T+   F + ++ VDG  V + +WDTA
Sbjct: 7   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 66
Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  LL FS+    S++N++  W  E  +YA        P +++G
Sbjct: 67  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 125
Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
            K+D+ + +           ++T + +   +  G   Y E S+K   NV A F+ A+
Sbjct: 126 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 171

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 6   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 66  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 125 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 160

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 18/177 (10%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +N F T    T+   F + ++ VDG  V + +WDTA
Sbjct: 5   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 64
Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  LL FS+    S++N++  W  E  +YA        P +++G
Sbjct: 65  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 123
Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
            K+D+ + +           ++T + +   +  G   Y E S+K   NV A F+ A+
Sbjct: 124 NKIDISERQ-----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAV 169

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 91/177 (51%), Gaps = 18/177 (10%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +N F +    T+   F + ++ VDG  V + +WDTA
Sbjct: 9   SSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 68
Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  LL FS+    S++N++  W  E  +YA        P +++G
Sbjct: 69  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLS-NWKKEFIYYADVKEPESFPFVILG 127
Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
            K D+++ +           ++T + +   K  G   Y E S+K   NV A F+ A+
Sbjct: 128 NKTDIKERQ-----------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAV 173

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 25  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 85  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 143
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 144 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 179

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 16  LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 76  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 134
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 135 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 170

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 33  LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 93  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLT 151
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 152 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 187

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL 
Sbjct: 68  ERFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGIKCDLT 126
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             K         V  TTA+  E    +G P ++E S+K   NV+  F
Sbjct: 127 TKK--------VVDYTTAK--EFADSLGIP-FLETSAKNATNVEQSF 162

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAGQ
Sbjct: 20  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   LL + +    +YENV ++W+ ELR +A   + I+LVG K DLR
Sbjct: 80  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 138
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +  +    +IE S+    NV+A F
Sbjct: 139 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 174

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 87/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAGQ
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   LL + +    +YENV ++W+ ELR +A   + I+LVG K DLR
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +  +    +IE S+    NV+A F
Sbjct: 148 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 183

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL--- 120
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                       + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 121 --------AGRTVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 15/170 (8%)
Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDT 61
            S  +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDT
Sbjct: 4   GSSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 63
Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKL 120
           AGQE +  +    YRGA   +L + +  + ++ N+ K+W   +  +A     ++LVG K 
Sbjct: 64  AGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKS 122
Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           D+               +T  QGE L K +G P +IE S+K   NV  +F
Sbjct: 123 DME-----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 160

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + FL  FS+    S+   A  ++ I  ++     VP +LVG K DL D 
Sbjct: 80  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 138
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +Q        V +  A+    +  +    Y+E S+KT+ NV  VF
Sbjct: 139 RQ--------VSVEEAKNRAEQWNVN---YVETSAKTRANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + FL  FS+    S+   A  ++ I  ++     VP +LVG K DL D 
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +Q        V +  A+    +  +    Y+E S+KT+ NV  VF
Sbjct: 127 RQ--------VSVEEAKNRAEQWNVN---YVETSAKTRANVDKVF 160

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 88/167 (52%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + ++  TV L +WDTAGQ
Sbjct: 9   LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   ++ + +  + S++NV K+WI E+  YA   V  +LVG K DL 
Sbjct: 69  ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNV-KQWIQEIDRYAMENVNKLLVGNKCDLV 127
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             +           +T+ +G EL    G   +IE S+K   NV+  F
Sbjct: 128 SKR----------VVTSDEGRELADSHGIK-FIETSAKNAYNVEQAF 163

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + FL  FS+    S+   A  ++ I  ++     VP +LVG K DL D 
Sbjct: 76  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 134
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +Q        V +  A+    +  +    Y+E S+KT+ NV  VF
Sbjct: 135 RQ--------VSVEEAKNRAEQWNVN---YVETSAKTRANVDKVF 168

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL--- 121
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                  P    + T Q ++L +  G P +IE S+KT+Q V   F
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 6   KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 65
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
           + +R    R  + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL   
Sbjct: 66  SAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL--- 121
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                  P    + T Q ++L +  G P +IE S+KT+Q V   F
Sbjct: 122 -------PSRT-VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + FL  FS+    S+   A  ++ I  ++     VP +LVG K DL D 
Sbjct: 66  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 124
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +Q        V +  A+    +  +    Y+E S+KT+ NV  VF
Sbjct: 125 RQ--------VSVEEAKNRADQWNVN---YVETSAKTRANVDKVF 158

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 15/171 (8%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWD 60
           S    +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWD
Sbjct: 16  SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTK 119
           TAGQE +  +    YRGA   +L + +  + ++ N+ K+W   +  +A     ++LVG K
Sbjct: 76  TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNK 134
Query: 120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            D+               +T  QGE L K +G P +IE S+K   NV  +F
Sbjct: 135 SDME-----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 173

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRD 124
            +  +    YRGA   +L + +  + ++ N+ K+W   +  +A     ++LVG K D+  
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME- 121
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                        +T  QGE L K +G P +IE S+K   NV  +F
Sbjct: 122 ----------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 125
           +  +    YRGA   +L + +  + ++ N+ K+W   +  +A     ++LVG K D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                       +T  QGE L K +G P +IE S+K   NV  +F
Sbjct: 122 ---------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG 
Sbjct: 8   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   LL + +    +YENV ++W+ ELR +A   + I+LVG K DLR
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 126
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +  +    +IE S+    NV+A F
Sbjct: 127 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 162

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 89/182 (48%), Gaps = 25/182 (13%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      +GS+     V
Sbjct: 25  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAGQE +  L    +R A  FLL F L S+ S+ NV + W+ +L+   Y     
Sbjct: 85  HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 143
Query: 113 IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
           I+L+G K DL D ++          +   Q  EL    G P Y E S+ T QNV+   + 
Sbjct: 144 IVLIGNKADLPDQRE----------VNERQARELADKYGIP-YFETSAATGQNVEKAVET 192
Query: 173 AI 174
            +
Sbjct: 193 LL 194

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG 
Sbjct: 29  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   LL + +    +YENV ++W+ ELR +A   + I+LVG K DLR
Sbjct: 89  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLR 147
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +  +    +IE S+    NV+A F
Sbjct: 148 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 183

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 88/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +GD   GK+ +++ +  + F      T+   F S  + V+ +TV   +WDTAGQE 
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           Y+ L P+ YRGA   ++ F + ++AS+E  AKKW+ EL+    P + + L G K DL D 
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQGNPNMVMALAGNKSDLLDA 132
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           ++  A+       T AQ   L        ++E S+KT  NVK +F
Sbjct: 133 RKVTAEDAQ----TYAQENGL-------FFMETSAKTATNVKEIF 166

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 90.1 bits (222), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE 
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 125
           +  +    YRGA   +L + +  + ++ N+ K+W   +  +A     ++LVG K D    
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-- 121
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                       +T  QGE L K +G P +IE S+K   NV  +F
Sbjct: 122 ---------TRVVTADQGEALAKELGIP-FIESSAKNDDNVNEIF 156

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG 
Sbjct: 11  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   LL + +    +YENV ++W+ ELR +A   + I LVG K DLR
Sbjct: 71  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 129
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +  +    +IE S+    NV+A F
Sbjct: 130 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 165

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  +   T+   F+  ++ VDG T+   +WDTAG 
Sbjct: 5   LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   LL + +    +YENV ++W+ ELR +A   + I LVG K DLR
Sbjct: 65  ERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIXLVGNKSDLR 123
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                   H  AVP   A+    +  +    +IE S+    NV+A F
Sbjct: 124 --------HLRAVPTDEARAFAEKNGLS---FIETSALDSTNVEAAF 159

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAG EDY
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDD 125
             +R   +R  + FL  FS+    S+   A  ++ I  ++     VP +LVG K DL D 
Sbjct: 68  AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDK 126
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +Q        V +  A+    +  +    Y+E S+KT+ NV  VF
Sbjct: 127 RQ--------VSVEEAKNRAEQWNVN---YVETSAKTRANVDKVF 160

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 25/175 (14%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAG E +  L    +R A  FLL F L S+ S+ NV + W+ +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVK 167
           I+L+G K DL D ++          +   Q  EL +  G P Y E S+ T QNV+
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVE 173

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 89/167 (53%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQ
Sbjct: 8   LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLR 123
           E +  +    YRGA   +L + + ++ S++N+ + WI  +  +A   V  +++G K D+ 
Sbjct: 68  ERFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVN 126
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           D +Q          ++  +GE+L    G   ++E S+K   NV+  F
Sbjct: 127 DKRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 162

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 89.0 bits (219), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQE 
Sbjct: 8   KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDD 125
           +  +    YRGA   +L + + ++ S++N+ + WI  +  +A   V  +++G K D+ D 
Sbjct: 68  FRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +Q          ++  +GE+L    G   ++E S+K   NV+  F
Sbjct: 127 RQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAF 160

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 25/175 (14%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAG E +  L    +R A  FLL F L S+ S+ NV + W  +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVK 167
           I+L+G K DL D ++          +   Q  EL +  G P Y E S+ T QNV+
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVE 173

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 87/175 (49%), Gaps = 25/175 (14%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAG E +  L    +R A  FLL F L S+ S+ NV + W+ +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVK 167
           I+L+G K DL D ++          +   Q  EL +  G P Y E S+ T QNV+
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVE 173

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 25/175 (14%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV------DGST-----V 54
            IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV      DG++     V
Sbjct: 11  LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR--HYAPGVP 112
           +L LWDTAG E +  L    +R A  FLL F L S+ S+ NV + W  +L+   Y     
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENPD 129
Query: 113 IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVK 167
           I+L+G K DL D ++          +   Q  EL +  G P Y E S+ T QNV+
Sbjct: 130 IVLIGNKADLPDQRE----------VNERQARELAEKYGIP-YFETSAATGQNVE 173

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLR 123
           E +  +    YRG+   ++ + +  + S+  V K W+ E+  YA    + +LVG K DL+
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 DDK 126
           D +
Sbjct: 127 DKR 129

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQ
Sbjct: 8   LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLR 123
           E +  +    YRG+   ++ + +  + S+  V K W+ E+  YA    + +LVG K DL+
Sbjct: 68  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 126
Query: 124 DDK 126
           D +
Sbjct: 127 DKR 129

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQ
Sbjct: 21  LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDLR 123
           E +  +    YRG+   ++ + +  + S+  V K W+ E+  YA    + +LVG K DL+
Sbjct: 81  ERFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLK 139
Query: 124 DDK 126
           D +
Sbjct: 140 DKR 142

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F +  V ++  TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  L P  YR A   L+ + +    S+   A+ W+ EL   A   + I LVG K+D   
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +        G   +   +GE+L +  G  ++ E S+KT +NV  VF
Sbjct: 123 E-------GGERKVAREEGEKLAEEKGL-LFFETSAKTGENVNDVF 160

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 4   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDD 125
           +  L P   R + V ++ + + +  S++  + KWI ++R      V I+LVG K DL D 
Sbjct: 64  FRSLIPSYIRDSTVAVVVYDITNLNSFQQTS-KWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +Q          IT  +GE+  K + + ++IE S+KT  NVK +F
Sbjct: 123 RQ----------ITIEEGEQRAKEL-SVMFIETSAKTGYNVKQLF 156

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 23  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 82
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 83  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 130
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 131 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+G VGKT +++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDD 125
           ++ L P+ YR ++  +L + +  + S++ V K W+ ELR      + + +VG K+DL  +
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +           ++  + E   + +GA  Y   S+K  + ++ +F
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+G VGKT +++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 8   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 67
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDD 125
           ++ L P+ YR ++  +L + +  + S++ V K W+ ELR      + + +VG K+DL  +
Sbjct: 68  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +           ++  + E   + +GA  Y   S+K  + ++ +F
Sbjct: 127 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 160

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 161

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 80
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 161

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V +G+G VGKT +++ Y  N F   ++ T+  +F +  + + G  VNL +WDTAGQE 
Sbjct: 22  KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQER 81
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDD 125
           ++ L P+ YR ++  +L + +  + S++ V K W+ ELR      + + +VG K+DL  +
Sbjct: 82  FHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +           ++  + E   + +GA  Y   S+K  + ++ +F
Sbjct: 141 RH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEELF 174

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K  + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KNALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           +++ +    YRGA   +L FS   + S+E ++  W  ++      +P  LV  K+DL DD
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAIS-SWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                       I   + E L K +    Y   S K   NV  VF
Sbjct: 125 S----------CIKNEEAEGLAKRLKLRFY-RTSVKEDLNVSEVF 158

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG + DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNRCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F   Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F   Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y P++ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  ++ PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y P++ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 22  KSALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 81
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 82  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 129
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 130 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 162

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +        AV    AQ       +   +++E S+KT  NV  +F A
Sbjct: 127 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 163

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 67/113 (59%), Gaps = 3/113 (2%)
Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQEDYNRL 70
           +GD  VGK+C+L+ +  +T+   Y+ T+  +F    + +DG T+ L +WDTAGQE +  +
Sbjct: 4   IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 63
Query: 71  RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122
               YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL
Sbjct: 64  TSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 88/168 (52%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAG
Sbjct: 13  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 72
Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122
           QE +  L P   R + V ++ + + +  S+   + KWI ++R      V I+LVG K DL
Sbjct: 73  QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTS-KWIDDVRTERGSDVIIMLVGNKTDL 131
Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            D +Q          ++T +GE   K +   ++IE S+K   NVK +F
Sbjct: 132 SDKRQ----------VSTEEGERKAKELNV-MFIETSAKAGYNVKQLF 168

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +        AV    AQ       +   +++E S+KT  NV  +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 162

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ +++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DT GQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG+E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTA QE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG    L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 14/170 (8%)
Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDT 61
            S   K + +GD  VGK+C+L+ +T   F   +  T+   F A +V +DG  + L +WDT
Sbjct: 18  GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 77
Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKL 120
           AGQE +  +    YRGA   LL + +  + ++ ++   W+ + R H +  + I+L+G K 
Sbjct: 78  AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLT-SWLEDARQHSSSNMVIMLIGNKS 136
Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           DL   +           +   +GE   +  G  +++E S+KT  NV+  F
Sbjct: 137 DLESRR----------DVKREEGEAFAREHGL-IFMETSAKTACNVEEAF 175

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +  + F TDY PT+ D+++   V+D     L + DTAGQE++  +R    R  
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTG 77
Query: 79  DVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVP 137
           + FLL FS+  + S+E + K     LR       P+IL+G K DL        DH   V 
Sbjct: 78  EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL--------DHQRQV- 128
Query: 138 ITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            T  +G++L + +    Y+E S+K + NV   F
Sbjct: 129 -TQEEGQQLARQLKV-TYMEASAKIRMNVDQAF 159

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+C+L+ +T   F   +  T+   F A ++ +DG  + L +WDTAGQ
Sbjct: 10  LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E +  +    YRGA   LL + +  + ++ ++   W+ + R H    + I+L+G K DL 
Sbjct: 70  ESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLE 128
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             ++          +   +GE   +  G  +++E S+KT  NV+  F
Sbjct: 129 SRRE----------VKKEEGEAFAREHGL-IFMETSAKTASNVEEAF 164

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 14/170 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     ++LVG K D+ D
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 124
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           ++           +++ +G +L   +G   + E S+K   NVK  F+  +
Sbjct: 125 ER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLV 163

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   ++ + + +  ++   AK W+ EL R  +P + I L G K DL  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +        AV    AQ         + +++E S+KT  NV  +F A
Sbjct: 125 KR--------AVEFQEAQAYADD---NSLLFMETSAKTAMNVNEIFMA 161

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +        AV    AQ       +   +++E S+KT  NV  +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 162

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+ + +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +        AV    AQ       +   +++E S+KT  NV  +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 162

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P  YRGA   ++ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 126
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +        AV    AQ       +   ++ E S+KT  NV  +F A
Sbjct: 127 KR--------AVDFQEAQSYADDNSL---LFXETSAKTSXNVNEIFXA 163

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL          P   
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + T Q ++L +  G P +IE S+KT+Q V   F
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 17  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 76
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL          P   
Sbjct: 77  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT 125
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + T Q ++L +  G P +IE S+KT+Q V   F
Sbjct: 126 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 157

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +        AV    AQ       +   +++E S+KT  NV  +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 162

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   ++ + + +  ++   AK W+ EL R  +P + I L G K DL  
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS 122
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +        AV    AQ         + +++E S+KT  NV  +F A
Sbjct: 123 KR--------AVEFQEAQAYADD---NSLLFMETSAKTAMNVNEIFMA 159

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +GD  VGK+ +L+ +  NTF   Y+ T+  +F    V ++G  V L +WDTAGQ
Sbjct: 9   LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124
           E +  +    YRG    ++ + + S  S+ NV K+W+ E+      V  ILVG K     
Sbjct: 69  ERFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNK----- 122
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 171
                 D P    + T    +    +G  ++ E S+K   NV+ +F+
Sbjct: 123 -----NDDPERKVVETEDAYKFAGQMGIQLF-ETSAKENVNVEEMFN 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 21  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTG 80
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 81  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AAR 128
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 129 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 161

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 93
Query: 79  DVFLLAFSLISKASYE--NVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+   N+ ++ I  ++  +  VP++LVG K DL          P   
Sbjct: 94  EGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDL----------PTRT 142
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + T Q  EL K  G P +IE S+KT+Q V+  F
Sbjct: 143 -VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAF 174

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +        AV    AQ         + +++E S+KT  NV  +F A
Sbjct: 126 KR--------AVDFQEAQSYADD---NSLLFMETSAKTSMNVNEIFMA 162

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGK+ +++ +    F      T+   F +  V +D +TV   +WDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 125
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +        AV    AQ       +   +++E S+KT  NV  +F A
Sbjct: 126 KR--------AVDFQEAQSYADDNSL---LFMETSAKTSMNVNEIFMA 162

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +  PT+ D++   VV+DG T  L + DTAGQE+Y+ +R    R  
Sbjct: 16  KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL            A 
Sbjct: 76  EGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AAR 123
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + + Q ++L +  G P YIE S+KT+Q V+  F
Sbjct: 124 TVESRQAQDLARSYGIP-YIETSAKTRQGVEDAF 156

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 13/166 (7%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
           ++ + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +N +    YR A   +L + +  K +++++  KW+  +  YA     ++LVG KLD   
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLP-KWMKMIDKYASEDAELLLVGNKLDCET 145
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           D++          IT  QGE+  + I    + E S+K   NV  +F
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 93/173 (53%), Gaps = 14/173 (8%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WD 60
           SA R +K   +GD  VGK+ ++  +  + F  +  PT+  +F    V  G+ ++  L WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTK 119
           TAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ + P  + + + G K
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNK 137
Query: 120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            DL D ++        VP+  A+  E  + IGA + +E S+K   N++ +F  
Sbjct: 138 CDLSDIRE--------VPLKDAK--EYAESIGA-IVVETSAKNAINIEELFQG 179

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 16/173 (9%)
Query: 2   SASRF--IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGL 58
           SAS+    K V +G+ AVGK+ +++ +    F      T+   F + +V +D +TV   +
Sbjct: 2   SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEI 61
Query: 59  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVG 117
           WDTAGQE Y+ L P+ YRGA   ++ + + ++ ++   AK W+ EL R  +P + I L G
Sbjct: 62  WDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIALAG 120
Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            K DL + +    +   A                + +++E S+KT  NV  +F
Sbjct: 121 NKADLANKRMVEYEEAQAYADDN-----------SLLFMETSAKTAMNVNDLF 162

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V      + L +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  FLL + + ++ S+  V + W  +++ Y+     +ILVG K DL D
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           ++         VP     G  L   +G   + E S+K   NVK VF+  +
Sbjct: 142 ER--------VVP--AEDGRRLADDLGFE-FFEASAKENINVKQVFERLV 180

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQ
Sbjct: 26  LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLR 123
           E +  +    YR A+  +L + +  + S+  +  +W+ E+  YA   V  +LVG K+DL 
Sbjct: 86  ERFRSITQSYYRSANALILTYDITCEESFRCLP-EWLREIEQYASNKVITVLVGNKIDLA 144
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           + ++       A   + AQ            Y+E S+K   NV+ +F
Sbjct: 145 ERRE--VSQQRAEEFSEAQD---------MYYLETSAKESDNVEKLF 180

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   ++ + + ++ S+   AK W+ EL R  +P + I L G K DL +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQASPNIVIALSGNKADLAN 124
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +        AV    AQ         + +++E S+KT  NV  +F A
Sbjct: 125 KR--------AVDFQEAQSYADD---NSLLFMETSAKTSMNVNEIFMA 161

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 85/169 (50%), Gaps = 18/169 (10%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G    GK+C+L  +  N F  D   T+   F + VV V G TV L +WDTAGQ
Sbjct: 25  LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YRGA   LL + + S+ +Y ++A  W+ + R  A P + +IL G K DL 
Sbjct: 85  ERFRSVTRSYYRGAAGALLVYDITSRETYNSLA-AWLTDARTLASPNIVVILCGNKKDLD 143
Query: 124 DDKQ--FLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            +++  FL           AQ  EL       +++E S+ T +NV+  F
Sbjct: 144 PEREVTFLE------ASRFAQENEL-------MFLETSALTGENVEEAF 179

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 14/170 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     +ILVG K D+ +
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESF-NAVQDWATQIKTYSWDNAQVILVGNKCDMEE 142
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           ++         VP  T +G+ L + +G   + E S+K   +V+  F+  +
Sbjct: 143 ER--------VVP--TEKGQLLAEQLGFD-FFEASAKENISVRQAFERLV 181

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 3   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 62
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDD 125
           +  L P   R + V ++ + + +  S++    KWI ++R      V I+LVG K DL D 
Sbjct: 63  FRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +Q          ++  +GE   K +   ++IE S+K   NVK +F
Sbjct: 122 RQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 155

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 15/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAG E+Y+ +R    R  
Sbjct: 34  KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTG 93
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
           + FL  F++ +  S+E++   ++ I  ++  +  VP++LVG K DL          P   
Sbjct: 94  EGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT 142
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            + T Q ++L +  G P +IE S+KT+Q V   F
Sbjct: 143 -VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAF 174

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 90/173 (52%), Gaps = 19/173 (10%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTV-NLGLWDTAGQ 64
           +K + +GD  VGKT ++  Y ++ +   Y  T+  +F +  V VDG  V  + +WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTK 119
           E +  L    YRGAD  +L + + + +S+EN+ K W  E   +A        P +++G K
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIG-APVYIECSSKTQQNVKAVFD 171
           +D  + K+ +++            +EL K +G  P+++  S+K   NV   F+
Sbjct: 128 IDAEESKKIVSEKS---------AQELAKSLGDIPLFL-TSAKNAINVDTAFE 170

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 61
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLE 121
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           D++           +   QG+ L +      ++E S+K++ NV  +F
Sbjct: 122 DER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 85/167 (50%), Gaps = 8/167 (4%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSAN-VVVDGSTVNLGLWD 60
           S+ +  K V  GD AVGK+  L+    N F  +   T+  +F    ++VDG    L LWD
Sbjct: 24  SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           TAGQE +  +    +R AD  LL + +  + S+ N+ ++W+  +   A   VPI+LVG K
Sbjct: 84  TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNK 142
Query: 120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNV 166
            D+RD     A   G   +    GE+L    GA ++ E S+K   N+
Sbjct: 143 ADIRD----TAATEGQKCVPGHFGEKLAMTYGA-LFCETSAKDGSNI 184

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 86/169 (50%), Gaps = 14/169 (8%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
           S   K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTA
Sbjct: 13  SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 72
Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLD 121
           GQE +  +    YRGA   L+ + +  +++Y +++  W+ + R+   P   IIL+G K D
Sbjct: 73  GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKAD 131
Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           L   +           +T  + ++  +  G  +++E S+KT +NV+  F
Sbjct: 132 LEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAF 169

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + +    F  +Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           D++           +   QG+ L +      ++E S+K++ NV  +F
Sbjct: 122 DER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/175 (32%), Positives = 82/175 (46%), Gaps = 22/175 (12%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T N F  D   T+   F+   + ++G  +   +WDTAGQ
Sbjct: 13  LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   L+ + +   +SYEN    W+ ELR  A   V + L+G K DL 
Sbjct: 73  ERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLA 131
Query: 124 DDKQFLADHPGAVPI----TTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
                   H  AVP     T AQ  +L       ++ E S+   +NV   F+  I
Sbjct: 132 --------HLRAVPTEESKTFAQENQL-------LFTETSALNSENVDKAFEELI 171

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 25/174 (14%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-----------DGSTV 54
            IK + +GD  VGKT +L  YT   F + ++ TV  +F    VV            G  +
Sbjct: 11  LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 55  NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRH--YAPGVP 112
           +L LWDTAG E +  L    +R A  FLL F L ++ S+ NV + WI +L+   Y+    
Sbjct: 71  HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPD 129
Query: 113 IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNV 166
           I+L G K DL D +           +   +  EL +  G P Y E S+    N+
Sbjct: 130 IVLCGNKSDLEDQR----------AVKEEEARELAEKYGIP-YFETSAANGTNI 172

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           D++           +   QG+ L +      ++E S+K++ NV  +F
Sbjct: 122 DER----------VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  T+ L LWDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 64
Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122
           QE +  L P   R +   ++ + + +  S++    KWI ++R      V I+LVG K DL
Sbjct: 65  QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            D +Q          ++  +GE   K +   ++IE S+K   NVK +F
Sbjct: 124 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 160

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ AVGK+ +++ +    F      T+   F +  V +D +TV   +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   ++ + + +  ++   AK W+ EL R  +P + I L G K DL  
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIALAGNKADLAS 124
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +        AV    AQ       +   +++E S+KT  NV  +F A
Sbjct: 125 KR--------AVEFQEAQAYADDNSL---LFMETSAKTAMNVNEIFMA 161

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAG
Sbjct: 5   RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 64
Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122
            E +  L P   R + V ++ + + +  S++    KWI ++R      V I+LVG K DL
Sbjct: 65  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            D +Q          ++  +GE   K +   ++IE S+K   NVK +F
Sbjct: 124 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 160

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWD 60
           S SR  K + +GD  VGKTC+   + +  FP     T+  +F    V +DG  + + LWD
Sbjct: 16  SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWD 75
Query: 61  TAGQEDYNR-LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY--APGVPIILVG 117
           TAGQE + + +    YR     +  + + + AS+ ++   WI E + +  A  +P ILVG
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVG 134
Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT---QQNVKAVF 170
            K DLR           A+ + T   ++       P++ E S+K      +V+A+F
Sbjct: 135 NKCDLR----------SAIQVPTDLAQKFADTHSMPLF-ETSAKNPNDNDHVEAIF 179

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 85/170 (50%), Gaps = 14/170 (8%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  F+L + + ++ S+ N  + W  +++ Y+     ++LVG K D  D
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESF-NAVQDWSTQIKTYSWDNAQVLLVGNKCDXED 127
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           ++           +++ +G +L   +G   + E S+K   NVK  F+  +
Sbjct: 128 ER----------VVSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLV 166

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 13/167 (7%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K V VGD +VGKTC++  + +  F      T+  +F+   + + G  V L +WDTAGQ
Sbjct: 29  LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YR A+  +LA+ +  ++S+ +V   WI ++R YA   +  +L+G K DL 
Sbjct: 89  ERFRTITQSYYRSANGAILAYDITKRSSFLSVP-HWIEDVRKYAGSNIVQLLIGNKSDLS 147
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           + ++          ++ A+ + L +       IE S+K   NV+  F
Sbjct: 148 ELRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 14/169 (8%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
           S   K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTA
Sbjct: 28  SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 87
Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLD 121
           GQ  +  +    YRGA   L+ + +  +++Y +++  W+ + R+   P   IIL+G K D
Sbjct: 88  GQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLS-SWLTDARNLTNPNTVIILIGNKAD 146
Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           L   +           +T  + ++  +  G  +++E S+KT +NV+  F
Sbjct: 147 LEAQRD----------VTYEEAKQFAEENGL-LFLEASAKTGENVEDAF 184

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 86/168 (51%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAG
Sbjct: 15  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 74
Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122
            E +  L P   R + V ++ + + +  S++    KWI ++R      V I+LVG K DL
Sbjct: 75  LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 133
Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            D +Q          ++  +GE   K +   ++IE S+K   NVK +F
Sbjct: 134 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 170

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 11/167 (6%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G   VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 4   REYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGT 63
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLR 123
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K DL 
Sbjct: 64  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLE 123
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           D++           +   QG+ L +      ++E S+K++ NV  +F
Sbjct: 124 DER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 83/174 (47%), Gaps = 19/174 (10%)
Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
           SR  K + +GD  VGKTC+   + +  FP     T+  +F    V +DG  + + LWDTA
Sbjct: 27  SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTA 86
Query: 63  GQEDYNR-LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTK 119
           GQE + + +    YR     +  +   + AS+ ++   WI E + +  A  +P ILVG K
Sbjct: 87  GQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNK 145
Query: 120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT---QQNVKAVF 170
            DLR           A+ + T   ++       P++ E S+K      +V+A+F
Sbjct: 146 CDLR----------SAIQVPTDLAQKFADTHSXPLF-ETSAKNPNDNDHVEAIF 188

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G+   GK+C+L  +    F  D   T+   F + ++ V G  V L +WDTAGQ
Sbjct: 10  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLR 123
           E +  +    YRGA   LL + + S+ +Y N    W+ + R  A   + IIL G K DL 
Sbjct: 70  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 128
Query: 124 DDKQ--FLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            D++  FL           AQ  EL       +++E S+ T +NV+  F
Sbjct: 129 ADREVTFLE------ASRFAQENEL-------MFLETSALTGENVEEAF 164

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 65/121 (53%), Gaps = 4/121 (3%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAG 63
             K V +GD  VGK+ +L  +T + F  +   T+   F+   +   +   +   +WDTAG
Sbjct: 7   LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122
           QE Y  +    YRGA   LL + +  K S+EN+ +KW+ ELR  A   + I+LVG K DL
Sbjct: 67  QERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLVGNKSDL 125
Query: 123 R 123
           +
Sbjct: 126 K 126

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 76.3 bits (186), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQE 65
            K V +G+  VGKT +L  +T N F  D   T+   FS   V+ G+  V   +WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRD 124
            Y  +    YRGA   LL F L    +Y  V ++W+ EL  +A   + ++LVG K DL  
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 129
Query: 125 DKQFLADHPGAVPITTAQGEELRKLI--GAPVYIECSSKTQQNVKAVFDAAI 174
            ++        VP      EE R        +++E S+    NV+  F+  +
Sbjct: 130 ARE--------VPT-----EEARMFAENNGLLFLETSALDSTNVELAFETVL 168

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 14/165 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGKT ++  +  +TF  +Y  T+  D  S  + +D   V L LWDTAGQE 
Sbjct: 3   KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPE-LRHYAPGVPIILVGTKLDLRDD 125
           +  L P   R +   ++ + + ++ S+EN   KWI + L      V I LVG K DL D 
Sbjct: 63  FRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           ++          +T  +G +  +      + E S+K   N+K +F
Sbjct: 122 RK----------VTYEEGXQKAQEYNTXFH-ETSAKAGHNIKVLF 155

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAG 63
           R  K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  T+ L LWDTAG
Sbjct: 12  RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG 71
Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122
            E +  L P   R +   ++ + + +  S++    KWI ++R      V I+LVG K DL
Sbjct: 72  LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVGNKTDL 130
Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            D +Q          ++  +GE   K +   ++IE S+K   NVK +F
Sbjct: 131 ADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 167

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 81/172 (47%), Gaps = 18/172 (10%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGST-VNLGLWDTAGQE 65
            K V +G+  VGKT +L  +T N F  D   T+   FS   V+ G+  V   +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRD 124
            Y  +    YRGA   LL F L    +Y  V ++W+ EL  +A   + ++LVG K DL  
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKELYDHAEATIVVMLVGNKSDLSQ 144
Query: 125 DKQFLADHPGAVPITTAQGEELRKLI--GAPVYIECSSKTQQNVKAVFDAAI 174
            ++        VP      EE R        +++E S+    NV+  F+  +
Sbjct: 145 ARE--------VPT-----EEARMFAENNGLLFLETSALDSTNVELAFETVL 183

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 86/171 (50%), Gaps = 16/171 (9%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
           +K + +G+  VGK+ +L+ +T +TF  +   T+  +F    + VDG+   L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLR 123
            +  L P  YRGA   +L + +  + ++  +   W+ EL  Y     I+  LVG K+D +
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           ++++   D    +               + ++IE S+KT   V+  F+  +
Sbjct: 134 ENRE--VDRNEGLKFARKH---------SXLFIEASAKTCDGVQCAFEELV 173

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 81/169 (47%), Gaps = 18/169 (10%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G+   GK+C+L  +    F  D   T+   F + ++ V G  V L +WDTAGQ
Sbjct: 11  LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLR 123
           E +  +    YRGA   LL + + S+ +Y N    W+ + R  A   + IIL G K DL 
Sbjct: 71  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 129
Query: 124 DDKQ--FLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            D++  FL           AQ  EL       +++E S+ T ++V+  F
Sbjct: 130 ADREVTFLE------ASRFAQENEL-------MFLETSALTGEDVEEAF 165

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 77/161 (47%), Gaps = 13/161 (8%)
Query: 13  GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP 72
           G G VGK+ +++ +   TF   Y+PTV D +   +  D S   L + DT G   +  ++ 
Sbjct: 10  GAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQR 69
Query: 73  LSYRGADVFLLAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLDLRDDKQFLA 130
           LS      F+L +S+ S+ S E +    + I E++     +PI+LVG K D    ++   
Sbjct: 70  LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE--- 126
Query: 131 DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 171
                  + +++ E L +      ++E S+K   NVK +F 
Sbjct: 127 -------VQSSEAEALARTWKC-AFMETSAKLNHNVKELFQ 159

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YVPT+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YVPT+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +  + F +DY PT+ D+++    VDG    L + DTAGQE++  +R    R  
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81
Query: 79  DVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVP 137
             FLL F++  + S+  V K +   LR       P++LVG K DL   +Q        VP
Sbjct: 82  HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------VP 133
Query: 138 ITTAQGEELRKLIGAP---VYIECSSKTQQNVKAVFDAAI 174
            + A         GA     Y E S+K + NV   F+  +
Sbjct: 134 RSEASA------FGASHHVAYFEASAKLRLNVDEAFEQLV 167

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 14/167 (8%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K V +GD  VGK+ +L  +T++ F  +   T+   F+   + V+   +   +WDTAG 
Sbjct: 10  LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E Y  +    YRGA   L+ + +   +SYEN    W+ ELR  A   V + L+G K DL 
Sbjct: 70  ERYRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLTELRENADDNVAVGLIGNKSDLA 128
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
                   H  AVP   A+   +   +   ++ E S+    NV   F
Sbjct: 129 --------HLRAVPTDEAKNFAMENQM---LFTETSALNSDNVDKAF 164

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQ 64
             K + +G+   GK+C+L  +    F  D   T+   F + ++ V G  V L +WDTAG 
Sbjct: 8   LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLR 123
           E +  +    YRGA   LL + + S+ +Y N    W+ + R  A   + IIL G K DL 
Sbjct: 68  ERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQNIVIILCGNKKDLD 126
Query: 124 DDKQ--FLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            D++  FL           AQ  EL       +++E S+ T ++V+  F
Sbjct: 127 ADREVTFLE------ASRFAQENEL-------MFLETSALTGEDVEEAF 162

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            Y  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 84/168 (50%), Gaps = 14/168 (8%)
Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WDTAG 63
           R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++  L WDTAG
Sbjct: 4   RELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAG 63
Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDL 122
           QE +  L P+ YRG+   ++ + +  + ++  + K W+ ELR H  P + + + G K DL
Sbjct: 64  QERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            D ++          +     ++    I A +++E S+K   N+  +F
Sbjct: 123 TDVRE----------VMERDAKDYADSIHA-IFVETSAKNAININELF 159

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 16/173 (9%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+ S  +K    G   VGK+ +++ + +  F  +Y PT+   +     +D   V++ + D
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV--AKKWIPELRHYAPGVPIILVGT 118
           TAGQED  + R    R  + F+L + +  + S+E V   K  + E++     V +ILVG 
Sbjct: 83  TAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGN 140
Query: 119 KLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT-QQNVKAVF 170
           K DL   +Q          ++T +GE+L   +    Y ECS+ T + N+  +F
Sbjct: 141 KADLDHSRQ----------VSTEEGEKLATELACAFY-ECSACTGEGNITEIF 182

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 70.5 bits (171), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRD 124
           +DL +
Sbjct: 127 IDLEN 131

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 85/171 (49%), Gaps = 14/171 (8%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL-WD 60
           SA R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++  L WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
           TAG E +  L P+ YRG+   ++ + +  + ++  + K W+ ELR H  P + + + G K
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNK 120
Query: 120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            DL D ++          +     ++    I A +++E S+K   N+  +F
Sbjct: 121 CDLTDVRE----------VMERDAKDYADSIHA-IFVETSAKNAININELF 160

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRD 124
           +DL +
Sbjct: 127 IDLEN 131

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 126 K 126
           K
Sbjct: 123 K 123

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 12/144 (8%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVP 137
           D FL+ +S+  KAS+E+V +     LR       P+ILV  K+DL   ++          
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 138 ITTAQGEELRKLIGAPVYIECSSK 161
           +T  QG+E+      P YIE S+K
Sbjct: 141 VTRDQGKEMATKYNIP-YIETSAK 163

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 126 K 126
           K
Sbjct: 135 K 135

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 12/144 (8%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 26  KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 85
Query: 79  DVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVP 137
           D FL+ +S+  KAS+E+V +     LR       P+ILV  K+DL   ++          
Sbjct: 86  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 135
Query: 138 ITTAQGEELRKLIGAPVYIECSSK 161
           +T  QG+E+      P YIE S+K
Sbjct: 136 VTRDQGKEMATKYNIP-YIETSAK 158

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAGQ
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRD 124
           +D  +
Sbjct: 127 IDFEN 131

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 12/144 (8%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +    F  +Y PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVP 137
           D FL+ +S+  KAS+E+V +     LR       P+ILV  K+DL   ++          
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 138 ITTAQGEELRKLIGAPVYIECSSK 161
           +T  QG+E+      P YIE S+K
Sbjct: 141 VTRDQGKEMATKYNIP-YIETSAK 163

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M   R+ K V +G   VGKT +   +    F   Y PTV + +S  V +     +L L D
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78
Query: 61  TAGQEDYNRLRPLSY-RGADVFLLAFSLISKASYENVAKKWIPELR--HYAPGVPIILVG 117
           TAGQ++Y+ L P S+  G   ++L +S+ S  S++ V +    +L   H    VP++LVG
Sbjct: 79  TAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSFQ-VIESLYQKLHEGHGKTRVPVVLVG 136
Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
            K DL  +++          +   +G++L +  GA  ++E S++  Q  + +F   I
Sbjct: 137 NKADLSPERE----------VQAVEGKKLAESWGA-TFMESSARENQLTQGIFTKVI 182

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 12/144 (8%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + I +    F  +Y PT+ D++  +  +D     L + DTAGQE+++ +R    R  
Sbjct: 31  KSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG 90
Query: 79  DVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVP 137
           D FL+ +S+  KAS+E+V +     LR       P+ILV  K+DL   ++          
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRK---------- 140
Query: 138 ITTAQGEELRKLIGAPVYIECSSK 161
           +T  QG+E+      P YIE S+K
Sbjct: 141 VTRDQGKEMATKYNIP-YIETSAK 163

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  L    Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 6   FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
            +K + +GD  VGKT ++  Y +  F   Y  T+  +F +  V+VD   V + +WDTAG 
Sbjct: 8   LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPE-LRHYAP----GVPIILVGTK 119
           E +  L    YRGAD  +L F + +  +++ +   W  E L   +P      P +++G K
Sbjct: 68  ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 120 LDLRD 124
           +DL +
Sbjct: 127 IDLEN 131

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 131
Query: 126 K 126
           K
Sbjct: 132 K 132

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAG E
Sbjct: 7   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 67  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 126 K 126
           K
Sbjct: 126 K 126

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAG E
Sbjct: 11  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 71  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 126 K 126
           K
Sbjct: 130 K 130

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 14/154 (9%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ + + + + TF   Y PT+ D +   + VD S   L + DTAG E +  +R L  +  
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNG 75
Query: 79  DVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
             F+L +SL+++ S++++   +  I  ++ Y   VP+ILVG K+DL              
Sbjct: 76  QGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-VPVILVGNKVDL----------ESER 124
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            +++++G  L +  G P ++E S+K++  V  +F
Sbjct: 125 EVSSSEGRALAEEWGCP-FMETSAKSKTMVDELF 157

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +      YV T+       V   +   +   +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 126 K 126
           K
Sbjct: 135 K 135

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   Y+ T+  +    +   +   +   +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D+++ 
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 126 K 126
           K
Sbjct: 125 K 125

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   Y+ T+  +    +   +   +   +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D+++ 
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 126 K 126
           K
Sbjct: 124 K 124

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V VGDG  GKT  +  + +  F   Y+ T+  +    +   +   +   +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D+++ 
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 126 K 126
           K
Sbjct: 132 K 132

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Query: 19  KTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGA 78
           K+ +++ +   TF   Y+PT+ D +   +  D S   L + DT G   +  ++ LS    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKG 80
Query: 79  DVFLLAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAV 136
             F+L FS+ SK S E +    K I +++     +P++LVG K    D+ Q   D   A 
Sbjct: 81  HAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKC---DETQREVDTREAQ 137
Query: 137 PITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
            +     +E +       ++E S+K   NVK +F   +
Sbjct: 138 AV----AQEWK-----CAFMETSAKMNYNVKELFQELL 166

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M  S+  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61  TAGQEDYNRLRPLSYRGADV--FLLAFSLISKASYENVAKKWIPELRHYAPGV--PIILV 116
           TAGQ++Y+ + P +Y   D+  ++L +S+ S  S+E V K    +L      V  PI+LV
Sbjct: 61  TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLV 117
Query: 117 GTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           G K DL  ++           I+  +G+ L +   A  ++E S+K  Q    VF   I
Sbjct: 118 GNKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRII 164

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M  S+  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60
Query: 61  TAGQEDYNRLRPLSYRGADV--FLLAFSLISKASYENVAKKWIPELRHYAPGV--PIILV 116
           TAGQ++Y+ + P +Y   D+  ++L +S+ S  S+E V K    +L      V  PI+LV
Sbjct: 61  TAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLV 117
Query: 117 GTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           G K DL  ++           I+  +G+ L +   A  ++E S+K  Q    VF   I
Sbjct: 118 GNKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRII 164

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 84/167 (50%), Gaps = 18/167 (10%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L DTAGQ++Y
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEY 62
Query: 68  NRLRPLSYRGADV--FLLAFSLISKASYENVAKKWIPELRHYAPGV--PIILVGTKLDLR 123
           + + P +Y   D+  ++L +S+ S  S+E V K    +L      V  PI+LVG K DL 
Sbjct: 63  S-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 119
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
            ++           I+  +G+ L +   A  ++E S+K  Q    VF
Sbjct: 120 MER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVF 155

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVD-GSTVNLGLWDTAGQE 65
           K   +GDG VGKT  +       F  +Y  TV   N     + D G+ +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRD 124
               L+ + Y GA   +L F + S+ + +N+A +W+ E +       PI++   K+D+++
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNLA-RWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN 165
            ++        + +   +G+          Y E S+KT  N
Sbjct: 132 RQKI----SKKLVMEVLKGKNYE-------YFEISAKTAHN 161

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 6   FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---LGLWD 60
           + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
             G+ ++  L     +  D +L+ +S+  +AS+E  ++  I   R      +PIILVG K
Sbjct: 66  NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
            DL   ++       A  +           +    +IE S+  Q NVK +F+  +
Sbjct: 124 SDLVRXREVSVSEGRAXAV-----------VFDXKFIETSAAVQHNVKELFEGIV 167

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNLGLW 59
           S  R +K V +GDGA GKT +   +   TF   Y  T+  D F   + + G+  V L +W
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 60  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKW---IPELRHYAPGVPII-L 115
           D  GQ    ++      GA   LL + + +  S+EN+ + W   + ++   +   P++ L
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVAL 120
Query: 116 VGTKLDLR 123
           VG K+DL 
Sbjct: 121 VGNKIDLE 128

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 6   FIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---LGLWD 60
           + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L +W+
Sbjct: 6   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWE 65
Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTK 119
             G+ ++  L     +  D +L+ +S+  +AS+E  ++  I   R      +PIILVG K
Sbjct: 66  NKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK 123
Query: 120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
            DL   ++       A  +           +    +IE S+  Q NVK +F+  +
Sbjct: 124 SDLVRXREVSVSEGRAXAV-----------VFDCKFIETSAAVQHNVKELFEGIV 167

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 18/130 (13%)
Query: 41  DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKW 100
           +N++ N+      +   +WDTAGQE Y  + PL YRGA   ++ F  IS ++  + AK W
Sbjct: 84  NNYNENLC----NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD-ISNSNTLDRAKTW 138
Query: 101 IPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160
           + +L+  +    IILV  K+   D  +F  D         AQ   L       ++I+ S+
Sbjct: 139 VNQLK-ISSNYIIILVANKI---DKNKFQVDILEVQKY--AQDNNL-------LFIQTSA 185
Query: 161 KTQQNVKAVF 170
           KT  N+K +F
Sbjct: 186 KTGTNIKNIF 195

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 2   SASRFIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---L 56
           S + + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L
Sbjct: 2   SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 57  GLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIIL 115
            +W+  G+ ++  L     +  D +L+ +S+  +AS+E  ++  I   R      +PIIL
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 116 VGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           VG K DL   ++          ++ ++G     +     +IE S+  Q NVK +F+  +
Sbjct: 120 VGNKSDLVRCRE----------VSVSEGRACAVVFDCK-FIETSAAVQHNVKELFEGIV 167

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 87/177 (49%), Gaps = 20/177 (11%)
Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S SR  K   +G  +VGK+ + I +    F     PT+ + F+  + V+G   +L L DT
Sbjct: 2   SKSR--KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDT 59
Query: 62  AGQEDYNRLRPLSYRGADV--FLLAFSLISKASYENVAKKWIPELRHYAPGV--PIILVG 117
           AGQ++Y+ + P +Y   D+  ++L +S+ S  S+E V K    +L      V  PI+LVG
Sbjct: 60  AGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE-VIKVIHGKLLDMVGKVQIPIMLVG 116
Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
            K DL  ++           I+  +G+ L +   A  ++E S+K  Q    VF   I
Sbjct: 117 NKKDLHMER----------VISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRII 162

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 84/179 (46%), Gaps = 19/179 (10%)
Query: 2   SASRFIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVN---L 56
           S + + + V +G+  VGK+ +  + +   ++  +D      D +   ++VDG +     L
Sbjct: 33  SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 57  GLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIIL 115
            +W+  G+ ++  L     +  D +L+ +S+  +AS+E  ++  I   R      +PIIL
Sbjct: 93  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 150
Query: 116 VGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           VG K DL   ++          ++ ++G     +     +IE S+  Q NVK +F+  +
Sbjct: 151 VGNKSDLVRCRE----------VSVSEGRACAVVFDCK-FIETSAAVQHNVKELFEGIV 198

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 20/174 (11%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + VG+  VGK+ +  ++      + + P    D +   ++VD   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 66  DYNR-LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG--VPIILVGTKLDL 122
           D    LR    +  D FL+ FS+  + S+  V +  +  LR   P   +P+ILVG K DL
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDL 142
Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIG--APVYIECSSKTQQNVKAVFDAAI 174
              ++                EE R L G  +  +IE S+    N + +F+ A+
Sbjct: 143 ARSREVSL-------------EEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 183

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 73/168 (43%), Gaps = 14/168 (8%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT--AGQE 65
           + V +GD  VGKT +   +        +     D +   + VDG    L + DT  A + 
Sbjct: 6   RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRD 124
           D +  +    +G   +++ +S+  + S+E+ ++  I   R H A  VPIILVG K DL  
Sbjct: 66  DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125
Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            ++   +   A  +           +    +IE S+  Q NV  +F+ 
Sbjct: 126 CREVSVEEGRACAV-----------VFDCKFIETSATLQHNVAELFEG 162

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 20/173 (11%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF---DNFSANVVVDGSTVNLGLWDTAGQ 64
           K + VG+  VGK+ +  + T      D+   +    D +   ++VD   V L ++D   Q
Sbjct: 4   KVMLVGESGVGKSTL--AGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 65  EDYNR-LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG--VPIILVGTKLD 121
            D    L+    +  D FL+ FS+  + S+  V +  +  LR   P   +P+ILVG K D
Sbjct: 62  GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSD 120
Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           L   ++          ++  +G  L   +    +IE S+    N + +F+ A+
Sbjct: 121 LARSRE----------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELFEGAV 162

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIIL 115
           L +WD AG+E++    P       ++L  + L    +  +  K W+  ++  A   P+IL
Sbjct: 56  LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 115
Query: 116 VGTKLDLRDDKQ 127
           VGT LD+ D+KQ
Sbjct: 116 VGTHLDVSDEKQ 127

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIIL 115
           L +WD AG+E++    P       ++L  + L    +  +  K W+  ++  A   P+IL
Sbjct: 58  LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 117
Query: 116 VGTKLDLRDDKQ 127
           VGT LD+ D+KQ
Sbjct: 118 VGTHLDVSDEKQ 129

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 78/173 (45%), Gaps = 20/173 (11%)
Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDY-VPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +G+  VGK+ +  ++        + +    D +   ++VD   V L ++D   Q D
Sbjct: 14  KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 67  YNR-LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG--VPIILVGTKLDLR 123
               L+    +  D FL+ FS+  + S+  V +  +  LR   P   +P+ILVG K DL 
Sbjct: 74  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLL-RLRAGRPHHDLPVILVGNKSDLA 132
Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIG--APVYIECSSKTQQNVKAVFDAAI 174
             ++        V +     EE R L G  +  +IE S+    N + +F+ A+
Sbjct: 133 RSRE--------VSL-----EEGRHLAGTLSCKHIETSAALHHNTRELFEGAV 172

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 18/173 (10%)
Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +    +G    GK+ + + + +  F ++Y P + D +S+   VD   V+L + DTA  + 
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81
Query: 67  -YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP----GVPIILVGTKLD 121
             N  R L++  A  FL+ +S +      + +  ++  L  +A      +P +L+G KLD
Sbjct: 82  PRNCERYLNW--AHAFLVVYS-VDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138
Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           +   +Q          +T A+G  L    G   +   +    ++V+ VF  A+
Sbjct: 139 MAQYRQ----------VTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 17/177 (9%)
Query: 1   MSASRFIKCVTVGDGAVGKTCM--LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGL 58
           MS     K + +G   VGK+ +  +     +    +     +D    ++VVDG   +L +
Sbjct: 2   MSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMV 58
Query: 59  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVG 117
           +D   Q+    L        D +++ +S+  K S+E  ++  +   R      VPIILVG
Sbjct: 59  YDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVG 118
Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
            K DL   ++   D   A  +           +    +IE S+    NV+A+F+  +
Sbjct: 119 NKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSAALHHNVQALFEGVV 164

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 42  NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWI 101
            +  ++VVDG   +L ++D   Q+    L        D +++ +S+  K S+E  ++  +
Sbjct: 37  TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 96
Query: 102 PELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160
              R      VPIILVG K DL   ++   D   A  +           +    +IE S+
Sbjct: 97  QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 145
Query: 161 KTQQNVKAVFDAAI 174
               NV+A+F+  +
Sbjct: 146 ALHHNVQALFEGVV 159

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 12/134 (8%)
Query: 42  NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWI 101
            +  ++VVDG   +L ++D   Q+    L        D +++ +S+  K S+E  ++  +
Sbjct: 42  TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 102 PELR-HYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS 160
              R      VPIILVG K DL   ++   D   A  +           +    +IE S+
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 150
Query: 161 KTQQNVKAVFDAAI 174
               NV+A+F+  +
Sbjct: 151 ALHHNVQALFEGVV 164

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 19/128 (14%)
Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR 71
           VG    GKT  +    S  F  D +PTV   F+   V  G+ V + +WD  GQ  +  + 
Sbjct: 28  VGLQYSGKTTFVNVIASGQFSEDMIPTV--GFNMRKVTKGN-VTIKIWDIGGQPRFRSMW 84
Query: 72  PLSYRGADVFLLAFSLISKASYE-------NVAKKWIPELRHYAPGVPIILVGTKLDL-- 122
               RG +  +       +   E       N+  K  P+L+    G+P++++G K DL  
Sbjct: 85  ERYCRGVNAIVYMIDAADREKIEASRNELHNLLDK--PQLQ----GIPVLVLGNKRDLPN 138
Query: 123 -RDDKQFL 129
             D+KQ +
Sbjct: 139 ALDEKQLI 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-119
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-113
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-112
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-109
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-106
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-106
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-105
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-104
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-103
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-102
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	1e-102
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-99
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-99
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	3e-90
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	2e-54
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-52
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	5e-52
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-51
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	5e-51
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-50
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	9e-49
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	3e-48
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-48
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	4e-48
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	2e-47
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-47
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-47
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	9e-47
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-46
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	4e-46
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-45
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	5e-45
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	5e-45
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-44
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	2e-44
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	4e-44
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	5e-44
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	7e-44
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	6e-43
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	6e-43
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-42
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-42
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	3e-42
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	4e-42
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	8e-42
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	9e-42
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-41
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-41
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-41
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-41
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	2e-41
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-41
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-41
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-41
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	3e-41
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-41
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-41
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-41
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-41
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	4e-41
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	5e-41
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	5e-41
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	6e-41
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	8e-41
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	9e-41
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-40
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-40
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-40
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-40
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	6e-40
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	7e-40
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	9e-40
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-39
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-39
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	3e-39
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-39
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	4e-39
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	5e-38
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	6e-38
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	5e-37
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-36
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	6e-34
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	7e-34
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-32
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	5e-14
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	9e-13
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	6e-11
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-07
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	7e-05
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-04

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  335 bits (860), Expect = e-119
 Identities = 156/200 (78%), Positives = 171/200 (85%), Gaps = 5/200 (2%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS S+FIKCVTVGDGAVGKTCMLI YTSN FPTDY+PTVFDNFSANV VDG  VNLGLWD
Sbjct: 4   MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWD 63

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSYRGAD+F+LAFSLISKASYENV KKW+PELR +AP VPI+LVGTKL
Sbjct: 64  TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKL 123

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDK +LADH     IT+ QGEELRK IGA  YIECSSKTQQNVKAVFD AIKVVLQP
Sbjct: 124 DLRDDKGYLADHTN--VITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181

Query: 181 PKNK---KKKKRKAQKACSI 197
           P+ K   +++K   +  CSI
Sbjct: 182 PRRKEVPRRRKNHRRSGCSI 201

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  319 bits (819), Expect = e-113
 Identities = 164/180 (91%), Positives = 175/180 (97%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 3   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 62

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKL
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 122

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DLRDDKQF  DHPGAVPITT QGEEL+KLIGAP YIECSSK+Q+NVK VFDAAI+VVLQP
Sbjct: 123 DLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  317 bits (814), Expect = e-112
 Identities = 74/184 (40%), Positives = 111/184 (60%), Gaps = 8/184 (4%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           +  + +K V VGDGAVGKTC+L++++    PT YVPTVF+NFS  +        L LWDT
Sbjct: 19  NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDT 78

Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQE+Y+RLRPLSY  +DV LL F++ ++ S++N++ KW PE++HY      +LVG K+D
Sbjct: 79  AGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138

Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 181
           LR D            +T  +G++L + +G   YIE SS  +  +  VF+ ++  +    
Sbjct: 139 LRKDGS--------DDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190

Query: 182 KNKK 185
              K
Sbjct: 191 PVPK 194

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  309 bits (793), Expect = e-109
 Identities = 94/187 (50%), Positives = 131/187 (70%), Gaps = 2/187 (1%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
            +  R +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L D
Sbjct: 15  GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCD 74

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQ+++++LRPL Y   D+FLL FS++S +S++NV++KW+PE+R + P  PIILVGT+ 
Sbjct: 75  TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQS 134

Query: 121 DLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           DLR+D + L   D     P+     + L + I A  YIECS+ TQ+N+K VFDAAI   +
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194

Query: 179 QPPKNKK 185
           Q    ++
Sbjct: 195 QYSDTQQ 201

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  303 bits (778), Expect = e-106
 Identities = 88/181 (48%), Positives = 117/181 (64%), Gaps = 2/181 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQED
Sbjct: 26  KKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV L+ FS+ S  S EN+ +KW+PE++H+ P VPIILV  K DLR D+
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145

Query: 127 QFLADHP--GAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184
               +       P+ T  G  +   I A  Y+ECS+KT++ V+ VF+ A +  LQ     
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQKRYGS 205

Query: 185 K 185
           +
Sbjct: 206 Q 206

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  303 bits (778), Expect = e-106
 Identities = 80/180 (44%), Positives = 110/180 (61%), Gaps = 2/180 (1%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R +K V VGDG  GKT +L+ +    FP  Y PTVF+ +  N+ V G  V+L +WDTAGQ
Sbjct: 33  RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQ 92

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD 124
           +DY+RLRPL Y  A V LL F + S  S++N+  +W PE+ H+   VPII+VG K DLR 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152

Query: 125 DKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182
           DK  +      G  P+T  +G+E+ + +GA  Y+ECS++   NV AVF  A +V L    
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSRG 212

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  298 bits (766), Expect = e-105
 Identities = 115/177 (64%), Positives = 135/177 (76%), Gaps = 2/177 (1%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
            + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTAG
Sbjct: 28  GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG 87

Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123
           QEDY+RLRPLSY   DVFL+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDLR
Sbjct: 88  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147

Query: 124 DDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           DDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  297 bits (763), Expect = e-104
 Identities = 91/181 (50%), Positives = 122/181 (67%), Gaps = 3/181 (1%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+A R  K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWD
Sbjct: 21  MAAIR-KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWD 79

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K 
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKK 139

Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           DLR D+    +       P+ + +G ++   I A  Y+ECS+KT++ V+ VF+ A +  L
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199

Query: 179 Q 179
           Q
Sbjct: 200 Q 200

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  293 bits (751), Expect = e-103
 Identities = 118/185 (63%), Positives = 139/185 (75%), Gaps = 2/185 (1%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
           + + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DV L+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121

Query: 123 RDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           RDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI+ VL P
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

Query: 181 PKNKK 185
           P  KK
Sbjct: 182 PPVKK 186

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  292 bits (748), Expect = e-102
 Identities = 98/180 (54%), Positives = 134/180 (74%), Gaps = 2/180 (1%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            +  +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTA
Sbjct: 15  GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTA 74

Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DVFL+ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DL
Sbjct: 75  GQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDL 134

Query: 123 RDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           RDD + LA  +     PI   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI  +L P
Sbjct: 135 RDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTP 194

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  291 bits (747), Expect = e-102
 Identities = 66/176 (37%), Positives = 100/176 (56%), Gaps = 3/176 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   
Sbjct: 29  CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 88

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+ +RPLSY  +D  L+ F +    + ++V KKW  E++ + P   ++LVG K DLR D 
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148

Query: 127 QFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN-VKAVFDAAIKVVLQ 179
             L +  +    P++  QG  + K IGA  YIECS+   +N V+ +F  A    + 
Sbjct: 149 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  286 bits (733), Expect = 1e-99
 Identities = 66/190 (34%), Positives = 99/190 (52%), Gaps = 3/190 (1%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
                 K V VGD   GKT ML     + +P  YVPTVF+N++A +  +   V L LWDT
Sbjct: 23  PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDT 82

Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           +G   Y+ +RPL Y  +D  LL F +    + ++  KKW  E+  Y P   ++L+G K D
Sbjct: 83  SGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTD 142

Query: 122 LRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ-NVKAVFDAAIKVVL 178
           LR D   L +  H    PI+  QG  + K +GA +Y+E S+ T + ++ ++F  A  + L
Sbjct: 143 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 202

Query: 179 QPPKNKKKKK 188
             P    +K 
Sbjct: 203 NKPSPLPQKS 212

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  285 bits (730), Expect = 1e-99
 Identities = 66/176 (37%), Positives = 100/176 (56%), Gaps = 3/176 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   
Sbjct: 8   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+ +RPLSY  +D  L+ F +    + ++V KKW  E++ + P   ++LVG K DLR D 
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127

Query: 127 QFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN-VKAVFDAAIKVVLQ 179
             L +  +    P++  QG  + K IGA  YIECS+   +N V+ +F  A    + 
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score =  266 bits (682), Expect = 3e-90
 Identities = 115/183 (62%), Positives = 136/183 (74%), Gaps = 2/183 (1%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
            +A   IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWD
Sbjct: 150 EAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWD 209

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
           TAG EDY+RLRPLSY   DVFL+ FSL+S AS+ +V  KW PE+RH+ P  PIILVGTKL
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKL 269

Query: 121 DLRDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           DLRDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI+ VL
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329

Query: 179 QPP 181
            PP
Sbjct: 330 CPP 332

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  171 bits (435), Expect = 2e-54
 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 19/200 (9%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M   R+ K V +G   VGKT +   +    F   Y PTV + +S  V +     +L L D
Sbjct: 19  MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVD 78

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPE-LRHYA-PGVPIILVGT 118
           TAGQ++Y+ L      G   ++L +S+ S  S++ + +    +    +    VP++LVG 
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGN 137

Query: 119 KLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           K DL  +++          +   +G++L +  GA  ++E S++  Q  + +F   I+ + 
Sbjct: 138 KADLSPERE----------VQAVEGKKLAESWGAT-FMESSARENQLTQGIFTKVIQEIA 186

Query: 179 QPPKNKKKKKRKAQKACSIL 198
           +   +  +++R     C ++
Sbjct: 187 RVENSYGQERR-----CHLM 201

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  165 bits (421), Expect = 1e-52
 Identities = 50/190 (26%), Positives = 86/190 (45%), Gaps = 14/190 (7%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M  S+  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L D
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPE-LRHYA-PGVPIILVGT 118
           TAGQ++Y+          + ++L +S+ S  S+E + K    + L       +PI+LVG 
Sbjct: 61  TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGN 119

Query: 119 KLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           K DL  ++           I+  +G+ L +   A  ++E S+K  Q    VF   I    
Sbjct: 120 KKDLHMERV----------ISYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIILEAE 168

Query: 179 QPPKNKKKKK 188
           +      + K
Sbjct: 169 KMDGACSQGK 178

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  164 bits (418), Expect = 5e-52
 Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 23/206 (11%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S   + V  G G VGK+ +++ +   TF   Y+PT+ D +   +  D S   L + DT G
Sbjct: 6   SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTG 65

Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLD 121
              +  ++ LS      F+L FS+ SK S E +    K I +++     +P++LVG K D
Sbjct: 66  SHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125

Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ-- 179
               ++          + T + + + +      ++E S+K   NVK +F   + +  +  
Sbjct: 126 E-TQRE----------VDTREAQAVAQEWKCA-FMETSAKMNYNVKELFQELLTLETRRN 173

Query: 180 -------PPKNKKKKKRKAQKACSIL 198
                      K+K+  + +  C+++
Sbjct: 174 MSLNIDGKRSGKQKRTDRVKGKCTLM 199

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  163 bits (414), Expect = 2e-51
 Identities = 64/202 (31%), Positives = 105/202 (51%), Gaps = 19/202 (9%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            S   K V VG   VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTA
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 60

Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKL 120
           GQE+Y+ +R    R  + FL  F++ +  S+E++   +  +++       VP++LVG K 
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKC 119

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ- 179
           DL   +           + T Q ++L +  G P +IE S+KT+Q V   F   ++ + + 
Sbjct: 120 DL-PSRT----------VDTKQAQDLARSYGIP-FIETSAKTRQGVDDAFYTLVREIRKH 167

Query: 180 ---PPKNKKKKKRKAQKACSIL 198
                K+ KKKK+K++  C I+
Sbjct: 168 KEKMSKDGKKKKKKSKTKCVIM 189

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  162 bits (412), Expect = 5e-51
 Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 24/206 (11%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQ
Sbjct: 13  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 72

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDL 122
           EDY  +R   +R  + FL  FS+    S+      +  ++        VP +LVG K DL
Sbjct: 73  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDL 131

Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ--- 179
            D +Q          ++  + +   +      Y+E S+KT+ NV  VF   ++ +     
Sbjct: 132 EDKRQ----------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFFDLMREIRARKM 180

Query: 180 -------PPKNKKKKKRKAQKACSIL 198
                    K +K   ++ ++ C IL
Sbjct: 181 EDSKEKNGKKKRKSLAKRIRERCCIL 206

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  159 bits (406), Expect = 2e-50
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 15/179 (8%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S   +    G G VGK+ +++ +   TF   Y+PTV D +   +  D S   L + DT G
Sbjct: 1   SNDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTG 60

Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKL 120
              +  ++ LS      F+L +S+ S+ S E + K     I E++     +PI+LVG K 
Sbjct: 61  SHQFPAMQRLSISKGHAFILVYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKC 119

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           D    ++          + +++ E L +      ++E S+K   NVK +F   + +  +
Sbjct: 120 DESPSRE----------VQSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLEKR 167

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  155 bits (394), Expect = 9e-49
 Identities = 48/170 (28%), Positives = 91/170 (53%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + + + TF   Y PT+ D +   + VD S   L + DTAG E +
Sbjct: 5   KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDD 125
             +R L  +    F+L +SL+++ S++++ K    ++        VP+ILVG K+DL  +
Sbjct: 65  ASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
           ++          +++++G  L +  G P ++E S+K++  V  +F   ++
Sbjct: 124 RE----------VSSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  154 bits (393), Expect = 3e-48
 Identities = 51/185 (27%), Positives = 84/185 (45%), Gaps = 14/185 (7%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S   K V VG G VGK+ + I +  + F +DY PT+ D+++    VDG    L + DTAG
Sbjct: 7   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 66

Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLD 121
           QE++  +R    R    FLL F++  + S+  V  K   ++         P++LVG K D
Sbjct: 67  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKAD 125

Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 181
           L   +Q          +  ++            Y E S+K + NV   F+  ++ V +  
Sbjct: 126 LESQRQ----------VPRSEASAFGASHHVA-YFEASAKLRLNVDEAFEQLVRAVRKYQ 174

Query: 182 KNKKK 186
           + +  
Sbjct: 175 EQELP 179

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  155 bits (393), Expect = 3e-48
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 19/186 (10%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQ
Sbjct: 17  ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 76

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDL 122
           EDY  +R   +R  + FL  FS+    S+      +  ++        VP +LVG K DL
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDL 135

Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182
            D +Q          ++  + +   +      Y+E S+KT+ NV  VF   ++ +     
Sbjct: 136 EDKRQ----------VSVEEAKNRAEQWNVN-YVETSAKTRANVDKVFFDLMREI----- 179

Query: 183 NKKKKK 188
             +K +
Sbjct: 180 RARKME 185

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  153 bits (390), Expect = 4e-48
 Identities = 52/175 (29%), Positives = 83/175 (47%), Gaps = 14/175 (8%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQ
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQ 62

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDL 122
           EDY  +R   +R  + FL  FS+    S+      +  ++        VP +LVG K DL
Sbjct: 63  EDYAAIRDNYFRSGEGFLCVFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDL 121

Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177
            D +Q          ++  + +          Y+E S+KT+ NV  VF   ++ +
Sbjct: 122 EDKRQ----------VSVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMREI 165

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  152 bits (386), Expect = 2e-47
 Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 15/175 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG E +
Sbjct: 5   KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDD 125
             +R L  +    F L +S+ +++++ ++ +    ++        VP+ILVG K DL D+
Sbjct: 65  TAMRDLYMKNGQGFALVYSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDE 123

Query: 126 KQFLADHPGAVPITTAQGEEL-RKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +           +   QG+ L R+      ++E S+K++ NV  +F   ++ + +
Sbjct: 124 RV----------VGKEQGQNLARQWCNCA-FLESSAKSKINVNEIFYDLVRQINR 167

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  153 bits (388), Expect = 2e-47
 Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 21/192 (10%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
                  K V VG G VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + D
Sbjct: 16  FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILD 75

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGT 118
           TAGQE+Y+ +R    R  + FL  F++ +  S+ ++   +  +++       VP++LVG 
Sbjct: 76  TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGN 134

Query: 119 KLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           K DL   +           + T Q  EL K  G P +IE S+KT+Q V+  F   ++ + 
Sbjct: 135 KCDL-PTRT----------VDTKQAHELAKSYGIP-FIETSAKTRQGVEDAFYTLVREI- 181

Query: 179 QPPKNKKKKKRK 190
                ++ + +K
Sbjct: 182 -----RQYRMKK 188

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  151 bits (384), Expect = 3e-47
 Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 15/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG G VGK+ + I    N F  +  PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDD 125
           + +R    R  + FL  F++ +  S+E++  ++  +++       VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDL-AA 122

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +           + + Q ++L +  G P YIE S+KT+Q V+  F   ++ + Q
Sbjct: 123 RT----------VESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  150 bits (382), Expect = 9e-47
 Identities = 57/175 (32%), Positives = 89/175 (50%), Gaps = 15/175 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDG VGK+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE++
Sbjct: 20  KLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 79

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLDLRDD 125
           + +R    R  D FL+ +S+  KAS+E+V  ++   +         P+ILV  K+DL   
Sbjct: 80  SAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHL 138

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT-QQNVKAVFDAAIKVVLQ 179
           ++          +T  QG+E+      P YIE S+K    NV   F   ++V+ Q
Sbjct: 139 RK----------VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 182

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  151 bits (383), Expect = 1e-46
 Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 24/195 (12%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+ S  +K    G   VGK+ +++ + +  F  +Y PT+   +     +D   V++ + D
Sbjct: 23  MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILD 82

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY--APGVPIILVGT 118
           TAGQED    R    R  + F+L + +  + S+E V       L        V +ILVG 
Sbjct: 83  TAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGN 140

Query: 119 KLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ-NVKAVFDAAIKVV 177
           K DL   +Q          ++T +GE+L   +    + ECS+ T + N+  +F    + V
Sbjct: 141 KADLDHSRQ----------VSTEEGEKLATELACA-FYECSACTGEGNITEIFYELCREV 189

Query: 178 LQPPKNKKKKKRKAQ 192
                   +++R  Q
Sbjct: 190 --------RRRRMVQ 196

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  148 bits (377), Expect = 4e-46
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 15/165 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + +G   VGK+ +   +                +  ++VVDG   +L ++D   Q+  
Sbjct: 4   KVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDD 125
             L        D +++ +S+  K S+E    +   +LR       VPIILVG K DL   
Sbjct: 63  RWLPGHCMAMGDAYVIVYSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRS 121

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           ++          ++  +G     +     +IE S+    NV+A+F
Sbjct: 122 RE----------VSVDEGRACAVVFDCK-FIETSAALHHNVQALF 155

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  148 bits (376), Expect = 1e-45
 Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 22/187 (11%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQED 66
           K + VG+  VGK+ +  ++      + + P    D +   ++VD   V L ++D   Q D
Sbjct: 25  KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84

Query: 67  Y-NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTKLDLR 123
               LR    +  D FL+ FS+  + S+  V  + +  LR       +P+ILVG K DL 
Sbjct: 85  AGGWLRDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 183
             ++          ++  +G  L   +    +IE S+    N + +F+ A++ +      
Sbjct: 144 RSRE----------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELFEGAVRQI------ 186

Query: 184 KKKKKRK 190
           + ++ R 
Sbjct: 187 RLRRGRN 193

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  146 bits (370), Expect = 5e-45
 Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 22/191 (11%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
              + V +GD  VGKT +   +        +     D +   + VDG    L + DT   
Sbjct: 3   ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEA 62

Query: 65  E--DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTKL 120
           E  D +  +    +G   +++ +S+  + S+E+   +   +LR  H A  VPIILVG K 
Sbjct: 63  EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKA 121

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DL   ++          ++  +G     +     +IE S+  Q NV  +F+  ++ +   
Sbjct: 122 DLARCRE----------VSVEEGRACAVVFDCK-FIETSATLQHNVAELFEGVVRQL--- 167

Query: 181 PKNKKKKKRKA 191
              + +++  A
Sbjct: 168 ---RLRRRDSA 175

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  146 bits (370), Expect = 5e-45
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 16/167 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K + VG+  VGK+ +  ++        +     ++     ++VD   V L ++D   Q D
Sbjct: 4   KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63

Query: 67  YN-RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR--HYAPGVPIILVGTKLDLR 123
               L+    +  D FL+ FS+  + S+  V  + +  LR       +P+ILVG K DL 
Sbjct: 64  AGGWLQDHCLQTGDAFLIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLA 122

Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             ++          ++  +G  L   +    +IE S+    N + +F
Sbjct: 123 RSRE----------VSLEEGRHLAGTLSCK-HIETSAALHHNTRELF 158

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  145 bits (368), Expect = 1e-44
 Identities = 58/174 (33%), Positives = 80/174 (45%), Gaps = 13/174 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           +++ +    YRGA   +L FS   + S+E +   W  ++      +P  LV  K+DL DD
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDD 124

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
                       I   + E L K +    +   S K   NV  VF    +  LQ
Sbjct: 125 SC----------IKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEVFKYLAEKHLQ 167

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  145 bits (367), Expect = 2e-44
 Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 18/179 (10%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
                +    +G    GK+ + + + +  F ++Y P + D +S+   VD   V+L + DT
Sbjct: 17  QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDT 76

Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA----PGVPIILVG 117
           A  +   R        A  FL+ +S+ S+ S+++    ++  L  +A      +P +L+G
Sbjct: 77  ADLDTP-RNCERYLNWAHAFLVVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLG 134

Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ-QNVKAVFDAAIK 175
            KLD+   +Q          +T A+G  L    G   + E S+    ++V+ VF  A++
Sbjct: 135 NKLDMAQYRQ----------VTKAEGVALAGRFGCL-FFEVSACLDFEHVQHVFHEAVR 182

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  144 bits (365), Expect = 4e-44
 Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 13/183 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+ +L+ +  NTF   Y+ T+  D     V ++G  V L +WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YRG    ++ + + S  S+ NV K+W+ E+      V  ILVG K D  + 
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPER 128

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNKK 185
           K           + T    +    +G     E S+K   NV+ +F+   ++VL+  K+  
Sbjct: 129 KV----------VETEDAYKFAGQMGIQ-LFETSAKENVNVEEMFNCITELVLRAKKDNL 177

Query: 186 KKK 188
            K+
Sbjct: 178 AKQ 180

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  144 bits (366), Expect = 5e-44
 Identities = 43/193 (22%), Positives = 87/193 (45%), Gaps = 25/193 (12%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGL---W 59
            + + V +G+  VGK+ +   +     +  +D      D +   ++VDG +  + L   W
Sbjct: 36  TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 95

Query: 60  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR--HYAPGVPIILVG 117
           +  G+ ++  L     +  D +L+ +S+  +AS+E    +   +LR       +PIILVG
Sbjct: 96  ENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVG 152

Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177
            K DL   ++          ++ ++G     +     +IE S+  Q NVK +F+  ++ V
Sbjct: 153 NKSDLVRCRE----------VSVSEGRACAVVFDCK-FIETSAAVQHNVKELFEGIVRQV 201

Query: 178 LQPPKNKKKKKRK 190
               + ++  K K
Sbjct: 202 ----RLRRDSKEK 210

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  143 bits (364), Expect = 7e-44
 Identities = 45/201 (22%), Positives = 90/201 (44%), Gaps = 23/201 (11%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGL- 58
               + + V +G+  VGK+ +   +     +  +D      D +   ++VDG +  + L 
Sbjct: 2   FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILL 61

Query: 59  --WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR--HYAPGVPII 114
             W+  G+ ++  L     +  D +L+ +S+  +AS+E    +   +LR       +PII
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPII 118

Query: 115 LVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           LVG K DL   ++          ++ ++G     +     +IE S+  Q NVK +F+  +
Sbjct: 119 LVGNKSDLVRXRE----------VSVSEGRAXAVVFDXK-FIETSAAVQHNVKELFEGIV 167

Query: 175 KVVL--QPPKNKKKKKRKAQK 193
           + V   +  K K +++   QK
Sbjct: 168 RQVRLRRDSKEKNERRLAYQK 188

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  141 bits (357), Expect = 6e-43
 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 17/175 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K   VG+ + GK+ ++  Y + T+  +  P     F   +VVDG +  L + D  G  +
Sbjct: 21  LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPE 79

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG--VPIILVGTKLDLRD 124
                       D  +  FSL  + S++ V   +   L  +     VP++LVGT+  +  
Sbjct: 80  LQ-----FAAWVDAVVFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISA 133

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
                        I  ++  +L   +    Y E  +    NV+ VF    + V+ 
Sbjct: 134 ANP--------RVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  141 bits (358), Expect = 6e-43
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 13/175 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V VGD +VGKTC++  + +  F      T+  D     + + G  V L +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YR A+  +LA+ +  ++S+ +V   WI ++R YA   +  +L+G K DL +
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSE 148

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
            ++          ++ A+ + L +       IE S+K   NV+  F      ++ 
Sbjct: 149 LRE----------VSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  141 bits (357), Expect = 1e-42
 Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 15/178 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+  +        +   +   +WDTAGQE 
Sbjct: 17  KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +  LR   Y  A   ++ F + S+ +Y+NV   W  +L      +PI+L G K+D++D K
Sbjct: 77  FGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 135

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184
                         A+     +      Y + S+K+  N +  F    + ++  P  +
Sbjct: 136 V------------KAKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLWLARKLIGDPNLE 180

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  139 bits (353), Expect = 2e-42
 Identities = 36/191 (18%), Positives = 73/191 (38%), Gaps = 23/191 (12%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M +   ++   +GD   GK+ ++  + + ++      T  + +   ++VDG T  + + +
Sbjct: 2   MRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIRE 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP----GVPIILV 116
            AG  D           AD  +  FSL  + S++ V  +   +L         G+ + LV
Sbjct: 61  EAGAPDA-----KFSGWADAVIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALV 114

Query: 117 GT--KLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           GT  ++     +           +  A+   L   +    Y E  +    NV  VF    
Sbjct: 115 GTQDRISASSPRV----------VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVA 164

Query: 175 KVVLQPPKNKK 185
           + V+   K ++
Sbjct: 165 QKVVTLRKQQQ 175

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  139 bits (353), Expect = 3e-42
 Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 8/181 (4%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLW 59
            S+ +  K V  GD AVGK+  L+    N F  +   T+  D     ++VDG    L LW
Sbjct: 23  FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLW 82

Query: 60  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGT 118
           DTAGQE +  +    +R AD  LL + +  + S+ N+ ++W+  +   A   VPI+LVG 
Sbjct: 83  DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGN 141

Query: 119 KLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           K D+RD           VP     GE+L    GA  + E S+K   N+        + V 
Sbjct: 142 KADIRDTAATEGQK--CVP--GHFGEKLAMTYGAL-FCETSAKDGSNIVEAVLHLAREVK 196

Query: 179 Q 179
           +
Sbjct: 197 K 197

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  138 bits (350), Expect = 4e-42
 Identities = 47/175 (26%), Positives = 91/175 (52%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +G+G VGKT +++ Y  N F   ++ T+     +  + + G  VNL +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            ++ L P+ YR ++  +L + +  + S++ V K W+ ELR      + + +VG K+DL  
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEK 125

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           ++           ++  + E   + +GA  +   S+K  + ++ +F    K +++
Sbjct: 126 ERH----------VSIQEAESYAESVGAK-HYHTSAKQNKGIEELFLDLCKRMIE 169

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  138 bits (350), Expect = 8e-42
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    V      + L +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  FLL + + ++ S+  V + W  +++ Y+     +ILVG K DL D
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLED 141

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           ++           +    G  L   +G   + E S+K   NVK VF+  + V+ +
Sbjct: 142 ERV----------VPAEDGRRLADDLGFE-FFEASAKENINVKQVFERLVDVICE 185

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  138 bits (351), Expect = 9e-42
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 14/181 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGKTC++  +T   FP     T+  D     V ++G  V L +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YR A+  +L + +  + S+  +  +W+ E+  YA   V  +LVG K+DL +
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAE 145

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184
            ++          ++  + EE  +      Y+E S+K   NV+ +F      ++   +  
Sbjct: 146 RRE----------VSQQRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLISEARQN 194

Query: 185 K 185
            
Sbjct: 195 T 195

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  138 bits (349), Expect = 1e-41
 Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ +T   F   +  T+  +  +  V +DG  + L +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   LL + +  + ++ ++   W+ + R ++   + I+L+G K DL  
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLES 140

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
            +           +   +GE   +  G   ++E S+KT  NV+  F    K + +
Sbjct: 141 RRD----------VKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYR 184

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  138 bits (349), Expect = 2e-41
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ +  +T+   Y+ T+  D     + +DG T+ L +WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL  
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 152

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
            K           +     +E    +G P ++E S+K   NV+  F      + +
Sbjct: 153 KKV----------VDYTTAKEFADSLGIP-FLETSAKNATNVEQSFMTMAAEIKK 196

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  137 bits (347), Expect = 2e-41
 Identities = 57/178 (32%), Positives = 89/178 (50%), Gaps = 20/178 (11%)

Query: 1   MSASRF------IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGST 53
           MS+  F       K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  T
Sbjct: 3   MSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 62

Query: 54  VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVP 112
           V L LWDTAGQE +  L P   R + V ++ + + +  S+     KWI ++R      V 
Sbjct: 63  VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKWIDDVRTERGSDVI 121

Query: 113 IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           I+LVG K DL D +Q          ++T +GE   K +    +IE S+K   NVK +F
Sbjct: 122 IMLVGNKTDLSDKRQ----------VSTEEGERKAKELNVM-FIETSAKAGYNVKQLF 168

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  137 bits (348), Expect = 2e-41
 Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 14/179 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  +TF   +V TV  +F    V      V L +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  F+L + + ++ S+  V + W  +++ Y+     +ILVG K D+ +
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEE 142

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 183
           ++           + T +G+ L + +G   + E S+K   +V+  F+  +  +     +
Sbjct: 143 ERV----------VPTEKGQLLAEQLGFD-FFEASAKENISVRQAFERLVDAICDKMSD 190

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  138 bits (350), Expect = 2e-41
 Identities = 44/180 (24%), Positives = 77/180 (42%), Gaps = 15/180 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPT--VFDNFSANVVVDGSTVNLGLWDTAGQE 65
           K   +GDG VGKT  +       F  +Y  T    ++    +   G+ +   +WDTAGQE
Sbjct: 13  KICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQE 72

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
               L+ + Y GA   +L F + S+ + +N+  +W+ E +       PI++   K+D+++
Sbjct: 73  KKAVLKDVYYIGASGAILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184
            ++          I+     E+ K      Y E S+KT  N    F    ++    P   
Sbjct: 132 RQK----------ISKKLVMEVLKGKNYE-YFEISAKTAHNFGLPFLHLARIFTGRPDLI 180

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  137 bits (347), Expect = 2e-41
 Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 16/181 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +GD   GK+ +++ +  + F      T+    FS  + V+ +TV   +WDTAGQE
Sbjct: 13  AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y+ L P+ YRGA   ++ F + ++AS+E   KKW+ EL+    P + + L G K DL D
Sbjct: 73  RYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLD 131

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV--LQPPK 182
            ++          +T    +   +  G   ++E S+KT  NVK +F    + +  +QP +
Sbjct: 132 ARK----------VTAEDAQTYAQENGLF-FMETSAKTATNVKEIFYEIARRLPRVQPTE 180

Query: 183 N 183
           N
Sbjct: 181 N 181

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  137 bits (348), Expect = 2e-41
 Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 14/189 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +G+ +VGKT ++  +  ++F   Y  T+  D  S  + ++  TV L LWDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  L P   R + V ++ + + +  S++    KWI ++R      V I+LVG K DL D
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLAD 135

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184
            +Q          ++  +GE   K +    +IE S+K   NVK +F      +      +
Sbjct: 136 KRQ----------VSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGMESTQ 184

Query: 185 KKKKRKAQK 193
            + +     
Sbjct: 185 DRSREDMID 193

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  136 bits (346), Expect = 2e-41
 Identities = 54/190 (28%), Positives = 97/190 (51%), Gaps = 18/190 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   +L + + ++ S++N+ + WI  +  +A   V  +++G K D+ D
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVND 127

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184
            +Q          ++  +GE+L    G   ++E S+K   NV+  F    + +    K K
Sbjct: 128 KRQ----------VSKERGEKLALDYGIK-FMETSAKANINVENAFFTLARDI----KAK 172

Query: 185 KKKKRKAQKA 194
             K  KA  A
Sbjct: 173 MDKNWKATAA 182

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  137 bits (347), Expect = 3e-41
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGKT +L  +T N F  D   T+  +  +  V++  + V   +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA   LL F L    +Y  V ++W+ EL  +A   + ++LVG K DL  
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQ 144

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
            ++          + T +     +  G   ++E S+    NV+  F+  +K +  
Sbjct: 145 ARE----------VPTEEARMFAENNGLL-FLETSALDSTNVELAFETVLKEIFA 188

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  136 bits (346), Expect = 3e-41
 Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 19/186 (10%)

Query: 1   MSASRFI-KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGL 58
           M+    + K + +GDG VGK+ ++  Y +N F T    T+  +  + ++ VDG  V + +
Sbjct: 1   MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60

Query: 59  WDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----PGVPI 113
           WDTAGQE +  LR   YRG+D  LL FS+    S++N+   W  E  +YA        P 
Sbjct: 61  WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPF 119

Query: 114 ILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           +++G K+D+  ++Q          ++T + +   +  G   Y E S+K   NV A F+ A
Sbjct: 120 VILGNKIDI-SERQ----------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168

Query: 174 IKVVLQ 179
           ++ VL 
Sbjct: 169 VRRVLA 174

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  136 bits (346), Expect = 3e-41
 Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 14/180 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +G+   GK+C+L  +    F  D   T+  +  S  + V G  V L +WDTAGQE 
Sbjct: 12  KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 71

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   LL + + S+ +Y  +   W+ + R  A   + IIL G K DL  D
Sbjct: 72  FRSVTRSYYRGAAGALLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDAD 130

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNKK 185
           ++          +T  +     +      ++E S+ T +NV+  F    + +L   ++ +
Sbjct: 131 RE----------VTFLEASRFAQENELM-FLETSALTGENVEEAFVQCARKILNKIESGE 179

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  136 bits (345), Expect = 3e-41
 Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+     +  V +D +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           Y+ L P+ YRGA   ++ + + ++ S+    K W+ EL+  A P + I L G K DL + 
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANK 126

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +           +   + +          ++E S+KT  NV  +F A  K + +
Sbjct: 127 RA----------VDFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAKKLPK 169

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  136 bits (345), Expect = 3e-41
 Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 14/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L  +T   F  D   T+  +  +  + V G  + L +WDTAGQE 
Sbjct: 17  KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 76

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   L+ + +  +++Y ++   W+ + R+   P   IIL+G K DL   
Sbjct: 77  FRAVTRSYYRGAAGALMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQ 135

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +           +T  + ++  +  G   ++E S+KT +NV+  F  A K + Q
Sbjct: 136 RD----------VTYEEAKQFAEENGLL-FLEASAKTGENVEDAFLEAAKKIYQ 178

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  137 bits (347), Expect = 4e-41
 Identities = 49/188 (26%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            Y  +    YRGA  F+L + + ++ S+  V + W  +++ Y+     ++LVG K D+ D
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMED 127

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184
           ++           +++ +G +L   +G   + E S+K   NVK  F+  + V+ +     
Sbjct: 128 ERV----------VSSERGRQLADHLGFE-FFEASAKDNINVKQTFERLVDVICEKMSES 176

Query: 185 KKKKRKAQ 192
                 A 
Sbjct: 177 LDTADPAV 184

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  137 bits (346), Expect = 5e-41
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 14/189 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRG+   ++ + +  + S+  V K W+ E+  YA   V  +LVG K DL+D
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKD 127

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184
            +           +     +E       P ++E S+    NV+  F    + + +    +
Sbjct: 128 KRV----------VEYDVAKEFADANKMP-FLETSALDSTNVEDAFLTMARQIKESMSQQ 176

Query: 185 KKKKRKAQK 193
              +   +K
Sbjct: 177 NLNETTQKK 185

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  136 bits (345), Expect = 5e-41
 Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 14/180 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K + +G    GK+C+L  +  N F  D   T+  +  S  V V G TV L +WDTAGQE 
Sbjct: 27  KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 86

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +    YRGA   LL + + S+ +Y ++   W+ + R  A P + +IL G K DL  +
Sbjct: 87  FRSVTRSYYRGAAGALLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPE 145

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNKK 185
           ++          +T  +     +      ++E S+ T +NV+  F    + +L    + +
Sbjct: 146 RE----------VTFLEASRFAQENELM-FLETSALTGENVEEAFLKCARTILNKIDSGE 194

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  136 bits (344), Expect = 6e-41
 Identities = 54/188 (28%), Positives = 90/188 (47%), Gaps = 19/188 (10%)

Query: 1   MSASR--FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGS-TVNL 56
           MS+ +   +K + +GD  VGKT ++  Y ++ +   Y  T+  D  +  V VDG     +
Sbjct: 1   MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60

Query: 57  GLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----PGV 111
            +WDTAGQE +  L    YRGAD  +L + + + +S+EN+ K W  E   +A        
Sbjct: 61  QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETF 119

Query: 112 PIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 171
           P +++G K+D  + K+          ++    +EL K +G       S+K   NV   F+
Sbjct: 120 PFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFE 170

Query: 172 AAIKVVLQ 179
              +  LQ
Sbjct: 171 EIARSALQ 178

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  136 bits (344), Expect = 8e-41
 Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 16/186 (8%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 60
           SA R +K   +GD  VGK+ ++  +  + F  +  PT+     +  V          +WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           TAGQE ++ L P+ YRG+   ++ + +  + S+  + KKW+ EL+ +    + + + G K
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNK 137

Query: 120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV-- 177
            DL D ++          +     +E  + IGA   +E S+K   N++ +F    + +  
Sbjct: 138 CDLSDIRE----------VPLKDAKEYAESIGAI-VVETSAKNAINIEELFQGISRQIPP 186

Query: 178 LQPPKN 183
           L P +N
Sbjct: 187 LDPHEN 192

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  135 bits (343), Expect = 9e-41
 Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 15/176 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
           ++ + +G   VGKT ++  +T +TF      TV  +F    V + G  + L +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +N +    YR A   +L + +  K +++++  KW+  +  YA     ++LVG KLD   
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCET 145

Query: 125 DKQFLADHPGAVPITTAQGEEL-RKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           D++          IT  QGE+  +++ G   + E S+K   NV  +F   +  +L+
Sbjct: 146 DRE----------ITRQQGEKFAQQITGMR-FCEASAKDNFNVDEIFLKLVDDILK 190

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  135 bits (343), Expect = 1e-40
 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 14/189 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+  +  + ++ VDG T+   +WDTAGQE 
Sbjct: 7   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           Y R+    YRGA   LL + +    +YENV ++W+ ELR +A   + I+LVG K DLR  
Sbjct: 67  YRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNKK 185
           +           + T +     +      +IE S+    NV+  F   +  + +    K+
Sbjct: 126 RA----------VPTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQ 174

Query: 186 KKKRKAQKA 194
              R A   
Sbjct: 175 IADRAAHDE 183

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  135 bits (343), Expect = 1e-40
 Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 14/180 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L+ +  +T+   Y+ T+  D     + +DG T+ L +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   ++ + +  + S+ NV K+W+ E+  YA   V  +LVG K DL  
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTT 135

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184
            K           +     +E    +G P ++E S+K   NV+  F      + +     
Sbjct: 136 KKV----------VDYTTAKEFADSLGIP-FLETSAKNATNVEQSFMTMAAEIKKRMGPG 184

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  135 bits (343), Expect = 2e-40
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 14/187 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  D   T+  +  +  + ++G  +   +WDTAGQE 
Sbjct: 15  KIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQER 74

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           Y  +    YRGA   L+ + +   +SYEN    W+ ELR  A   V + L+G K DL   
Sbjct: 75  YRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHL 133

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNKK 185
           +           + T + +   +      + E S+   +NV   F+  I  + Q     +
Sbjct: 134 RA----------VPTEESKTFAQENQLL-FTETSALNSENVDKAFEELINTIYQKVSKHQ 182

Query: 186 KKKRKAQ 192
                + 
Sbjct: 183 MDLGDSS 189

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  135 bits (341), Expect = 2e-40
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 14/170 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+  +  + ++ VDG T+   +WDTAG E 
Sbjct: 31  KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           Y  +    YRGA   LL + +    +YENV ++W+ ELR +A   + I+LVG K DLR  
Sbjct: 91  YRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
           +           + T +     +  G   +IE S+    NV+A F   + 
Sbjct: 150 RA----------VPTDEARAFAEKNGLS-FIETSALDSTNVEAAFQTILT 188

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  133 bits (336), Expect = 6e-40
 Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 14/180 (7%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWD 60
           SA R +K   +GD  VGK+ ++  +  ++F  +  PT+     +  V          +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTK 119
           TAG E +  L P+ YRG+   ++ + +  + ++  + K W+ ELR +  P + + + G K
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNK 120

Query: 120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
            DL D ++          +     ++    I A  ++E S+K   N+  +F    + +  
Sbjct: 121 CDLTDVRE----------VMERDAKDYADSIHAI-FVETSAKNAININELFIEISRRIPS 169

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  133 bits (337), Expect = 7e-40
 Identities = 58/201 (28%), Positives = 89/201 (44%), Gaps = 31/201 (15%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-----------FDNFSANVVVDGSTVN 55
           IK + +GD  VGKT +L  YT   F + ++ TV             N     V  G  ++
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPI 113
           L LWDTAG E +  L    +R A  FLL F L ++ S+ NV + WI +L+ +A      I
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDI 130

Query: 114 ILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 173
           +L G K DL D +           +   +  EL +  G P Y E S+    N+    +  
Sbjct: 131 VLCGNKSDLEDQRA----------VKEEEARELAEKYGIP-YFETSAANGTNISHAIEML 179

Query: 174 IKVVLQPPKNKKKKKRKAQKA 194
           + ++       K+ +R   K+
Sbjct: 180 LDLI------MKRMERSVDKS 194

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  134 bits (338), Expect = 9e-40
 Identities = 56/193 (29%), Positives = 97/193 (50%), Gaps = 15/193 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L LWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   +L + +  + ++ N+ K+W   +  +A     ++LVG K D+ +
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 138

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184
            +           +T  QGE L K +G P +IE S+K   NV  +F    K++ +   + 
Sbjct: 139 TRV----------VTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQEKIDSN 187

Query: 185 KKKKRKAQKACSI 197
           K       K  +I
Sbjct: 188 KLVGVGNGKEGNI 200

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  131 bits (333), Expect = 2e-39
 Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 15/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  +    YRGA   +L + +  + ++ N+ K+W   +  +A     ++LVG K D+ +
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDM-E 121

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
            +           +T  QGE L K +G P +IE S+K   NV  +F    K++ +
Sbjct: 122 TRV----------VTADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 165

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  133 bits (336), Expect = 2e-39
 Identities = 65/202 (32%), Positives = 95/202 (47%), Gaps = 31/202 (15%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDG----------STVN 55
           IK + +GD  VGKT  L  YT N F   ++ TV  D     VV +             V+
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 56  LGLWDTAGQEDYNRLRPLS---YRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PG 110
           L LWDTAGQE   R R L+   +R A  FLL F L S+ S+ NV + W+ +L+  A    
Sbjct: 86  LQLWDTAGQE---RFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCEN 141

Query: 111 VPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
             I+L+G K DL D ++          +   Q  EL    G P Y E S+ T QNV+   
Sbjct: 142 PDIVLIGNKADLPDQRE----------VNERQARELADKYGIP-YFETSAATGQNVEKAV 190

Query: 171 DAAIKVVLQPPKNKKKKKRKAQ 192
           +  + ++++  +   +K +   
Sbjct: 191 ETLLDLIMKRMEQCVEKTQIPD 212

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  132 bits (334), Expect = 3e-39
 Identities = 48/189 (25%), Positives = 94/189 (49%), Gaps = 16/189 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           +K + +G+  VGK+ +L+ +T +TF  +   T+  D     + VDG+   L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLR 123
            +  L P  YRGA   +L + +  + ++  +   W+ EL  Y     +  +LVG K+D  
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK- 133

Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 183
           ++++          +   +G +  +      +IE S+KT   V+  F+  ++ ++Q P  
Sbjct: 134 ENRE----------VDRNEGLKFARKHSML-FIEASAKTCDGVQCAFEELVEKIIQTPGL 182

Query: 184 KKKKKRKAQ 192
            + + + + 
Sbjct: 183 WESENQNSG 191

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  131 bits (332), Expect = 3e-39
 Identities = 59/176 (33%), Positives = 92/176 (52%), Gaps = 15/176 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV-FDNFSANVVVDGSTVNLGLWDTAGQ 64
            K + VGD  VGKTC+L+ +    F    ++ TV  D  +  + VDG  V L +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +    YR A   LL + + +KAS++N+ + W+ E+  YA   V ++L+G K+D  
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSA 129

Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
            ++           +    GE+L K  G P ++E S+KT  NV   F A  K + +
Sbjct: 130 HERV----------VKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELKR 174

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  132 bits (334), Expect = 4e-39
 Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 20/187 (10%)

Query: 1   MSASR--FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLG 57
           M++ +   +K + +GD  VGKT ++  Y +  F   Y  T+  D  +  V+VD   V + 
Sbjct: 1   MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60

Query: 58  LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----PGVP 112
           +WDTAGQE +  L    YRGAD  +L F + +  +++ +   W  E    A        P
Sbjct: 61  IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFP 119

Query: 113 IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA 172
            +++G K+DL + +            T             P Y E S+K   NV+  F  
Sbjct: 120 FVVLGNKIDLENRQV----------ATKRAQAWCYSKNNIP-YFETSAKEAINVEQAFQT 168

Query: 173 AIKVVLQ 179
             +  L+
Sbjct: 169 IARNALK 175

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  128 bits (324), Expect = 5e-38
 Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 18/184 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDG-STVNLGLWDTAGQ 64
           +K V +GDGA GKT +   +   TF   Y  T+  D F   + + G   V L +WD  GQ
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKL 120
               ++      GA   LL + + +  S+EN+ + W   ++  +        + LVG K+
Sbjct: 67  TIGGKMLDKYIYGAQGVLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKI 125

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           DL   +           I   +     +  G       S+KT  +V   F      +L  
Sbjct: 126 DLEHMRT----------IKPEKHLRFCQENGFS-SHFVSAKTGDSVFLCFQKVAAEILGI 174

Query: 181 PKNK 184
             NK
Sbjct: 175 KLNK 178

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  128 bits (324), Expect = 6e-38
 Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 17/183 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSA-NVVVDGS---TVNLGLWD 60
           +K + VG+   GKT +L                TV  +     + +       + L +WD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120
            AG+E++    P       ++L  + L    +  +  K W+  ++  A   P+ILVGT L
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHL 122

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAP----VYIECSSKTQQNVKAVFDAAIKV 176
           D+ D+KQ  A         +   +EL    G P     +   +++    +  +    I  
Sbjct: 123 DVSDEKQRKA-------CMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175

Query: 177 VLQ 179
            L 
Sbjct: 176 SLN 178

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  126 bits (318), Expect = 5e-37
 Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 25/183 (13%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGKTC+   + +  FP     T+  D     V +DG  + + LWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 66  DYNRLR----PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTK 119
              R R       YR     +  + + + AS+ ++   WI E + +     +P ILVG K
Sbjct: 81  ---RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNK 136

Query: 120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ---QNVKAVFDAAIKV 176
            DLR   Q          + T   ++       P   E S+K      +V+A+F      
Sbjct: 137 CDLRSAIQ----------VPTDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIFMTLAHK 185

Query: 177 VLQ 179
           +  
Sbjct: 186 LKS 188

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  125 bits (315), Expect = 2e-36
 Identities = 45/206 (21%), Positives = 80/206 (38%), Gaps = 24/206 (11%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYT--SNTFPTDYVPTV-FDNFSANVVVDGSTVNLG 57
           ++A+   K   VG+  VGK+ ++  +T   + F  DY  T   +   A V +  +TV++ 
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74

Query: 58  LW--DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA----PGV 111
           L+  DTAG + Y       + G    +L F + S  S+E+  K W   L+         +
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPL 133

Query: 112 PIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK-TQQNVKAVF 170
             +LV  K DL   +         V       ++         + + S+    ++  A F
Sbjct: 134 RAVLVANKTDLPPQRH-------QVR--LDMAQDWATTNTLD-FFDVSANPPGKDADAPF 183

Query: 171 DAAIKVVLQPPKNKKKKKRKAQKACS 196
            +         +N + K    Q AC 
Sbjct: 184 LSIATTFY---RNYEDKVAAFQDACR 206

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  125 bits (314), Expect = 6e-34
 Identities = 37/190 (19%), Positives = 56/190 (29%), Gaps = 24/190 (12%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV---------DGSTVNLG 57
           IK   +GDG  GKT +L      TF      T   N                +       
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101

Query: 58  LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVG 117
            WD  GQE  +         + V++L        +  N    W+  +  Y    P+I+V 
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNK-HYWLRHIEKYGGKSPVIVVM 157

Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177
            K+D                I   +  E    I    +   S K    V+++  +    V
Sbjct: 158 NKIDENPSYN----------IEQKKINERFPAIENR-FHRISCKNGDGVESIAKSLKSAV 206

Query: 178 LQPPKNKKKK 187
           L P       
Sbjct: 207 LHPDSIYGTP 216

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  117 bits (295), Expect = 7e-34
 Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 11/166 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+     +  V ++  TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRD 124
            +  L P  YR A   L+ + +    S+    + W+ EL   A   + I LVG K+D   
Sbjct: 64  RFASLAPXYYRNAQAALVVYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQ 122

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF 170
           +            +   +GE+L +  G   + E S+KT +NV  VF
Sbjct: 123 EGGERK-------VAREEGEKLAEEKGLL-FFETSAKTGENVNDVF 160

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  114 bits (287), Expect = 3e-32
 Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 52/221 (23%)

Query: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLG-- 57
           M      K V +G+ +VGK+ +++  T +TF  +   T+     +  V ++   +     
Sbjct: 2   MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSN 61

Query: 58  -----------------------------------LWDTAGQEDYNRLRPLSYRGADVFL 82
                                              +WDTAGQE Y  + PL YRGA   +
Sbjct: 62  NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121

Query: 83  LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ 142
           + F + +  + +   K W+ +L+       IILV  K+D  +  Q          +   +
Sbjct: 122 VVFDISNSNTLDRA-KTWVNQLKIS-SNYIIILVANKIDK-NKFQ----------VDILE 168

Query: 143 GEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 183
            ++  +      +I+ S+KT  N+K +F    + + +   N
Sbjct: 169 VQKYAQDNNLL-FIQTSAKTGTNIKNIFYMLAEEIYKNIIN 208

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 67.7 bits (165), Expect = 5e-14
 Identities = 28/159 (17%), Positives = 51/159 (32%), Gaps = 23/159 (14%)

Query: 29  NTFPTDYVPTVFDNFSANVVVDGSTVNLGL----WDTAGQEDY--NRLRPLSYRGADVFL 82
           +     +  T    +              L     D  G E     +  P      D FL
Sbjct: 108 DQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL 167

Query: 83  LAF--SLISKASYENVAKKWIPELRHYAPG--VPIILVGTKLDLRDDKQFLADHPGAVPI 138
           L    S     ++++   K++  L +       PI++V TK D   ++           I
Sbjct: 168 LGIDVSRGMNRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I 216

Query: 139 TTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177
             A    L K       +E S+++  NV   F   ++++
Sbjct: 217 RDAHTFALSKK-NLQ-VVETSARSNVNVDLAFSTLVQLI 253

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 62.8 bits (153), Expect = 9e-13
 Identities = 43/206 (20%), Positives = 67/206 (32%), Gaps = 43/206 (20%)

Query: 7   IKCVTVGDGAVGKTCML----------ISYTSNTFPTDYVPTVFDNFSANVV--VDGSTV 54
            K V  G G  GKT  L                +  T+   T+F +F    +  V G   
Sbjct: 15  FKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKT 74

Query: 55  NLGLWDTAGQEDYNRLRPLSYRGAD--VFLL----AFSLISKASYENVAKKWIPELRHYA 108
              L+   GQ  YN  R L  RG D  VF+          +  S  N+ +          
Sbjct: 75  RFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134

Query: 109 PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG--APVYI-ECSSKTQQN 165
             VPI++   K DL          P A+P+     E +R ++       + E  +   + 
Sbjct: 135 -DVPIVIQVNKRDL----------PDALPV-----EMVRAVVDPEGKFPVLEAVATEGKG 178

Query: 166 VKAVFDAAIKVVLQPPKNKKKKKRKA 191
           V        ++VL       +    +
Sbjct: 179 VFETLKEVSRLVL------ARVAGGS 198

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 59.2 bits (143), Expect = 6e-11
 Identities = 27/130 (20%), Positives = 53/130 (40%), Gaps = 12/130 (9%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYV---PTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           K + +G    GK+ M     SN    D      T+  +   + +     + L LWD  GQ
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATI--DVEHSHLRFLGNMTLNLWDCGGQ 62

Query: 65  EDY-----NRLRPLSYRGADVFLLAFSLISKASYENVA--KKWIPELRHYAPGVPIILVG 117
           + +      + +   ++   V +  F + S    +++    K + +LR Y+P   I ++ 
Sbjct: 63  DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122

Query: 118 TKLDLRDDKQ 127
            K+DL    +
Sbjct: 123 HKMDLVQLDK 132

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 19/124 (15%), Positives = 40/124 (32%), Gaps = 11/124 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTD---YVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
            + + +G    GK+ +         P +      T       + + + S VN  +WD  G
Sbjct: 21  PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN--KIYKDDISNSSFVNFQIWDFPG 78

Query: 64  QEDYNRL---RPLSYRGADVFLLAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGT 118
           Q D+        + +RG    +           E + +    + +     P +   +   
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIH 137

Query: 119 KLDL 122
           K+D 
Sbjct: 138 KVDG 141

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 11/118 (9%)

Query: 12  VGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVD--GSTVNLGLWDTAGQEDYNR 69
           +G    GK+ +      N  P D   T++   ++N  ++   + ++L + +  GQ +Y  
Sbjct: 5   MGVRRCGKSSICKVVFHNMQPLD---TLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFE 61

Query: 70  LRPLS---YRGADVFLLAFSLISKASYENVAK--KWIPELRHYAPGVPIILVGTKLDL 122
               S   ++     +             +      I       P + I ++  K+D 
Sbjct: 62  PSYDSERLFKSVGALVYVID-SQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG 118

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 42/181 (23%), Positives = 65/181 (35%), Gaps = 52/181 (28%)

Query: 12  VG-DGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANV-VVDGSTVNLGLWDTAGQEDYN 68
           VG   + GKT  +    S  F  D +PTV F     N+  +    V + LWD  GQ    
Sbjct: 28  VGLQYS-GKTTFVNVIASGQFNEDMIPTVGF-----NMRKITKGNVTIKLWDIGGQP--- 78

Query: 69  RLRPL---SYRGADVFLLAFSLI-------------SKASYENVAKKWIPELRHYAPGVP 112
           R R +     RG         ++             SK    N+  K  P+L+    G+P
Sbjct: 79  RFRSMWERYCRGVSA------IVYMVDAADQEKIEASKNELHNLLDK--PQLQ----GIP 126

Query: 113 IILVGTKLDLRDDKQFLADHPGAVPITT-AQGEELRKLIGAPVYI-ECSSKTQQNVKAVF 170
           ++++G K DL          PGA+      +   L  +    +     S K + N+    
Sbjct: 127 VLVLGNKRDL----------PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 176

Query: 171 D 171
            
Sbjct: 177 Q 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.98
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.96
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.98
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.98
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.97
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.97
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.97
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.97
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.97
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.96
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.96
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.96
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.96
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.96
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.96
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.96
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.95
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.94
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.94
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.94
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.94
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.94
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.93
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.93
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.92
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.92
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.92
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.91
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.9
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.9
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.9
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.89
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.89
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.89
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.89
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.89
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.89
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.88
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.88
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.87
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.87
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.87
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.87
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.86
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.86
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.86
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.86
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.86
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.85
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.85
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.85
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.85
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.85
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.85
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.84
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.84
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.84
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.83
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.83
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.83
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.82
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.82
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.81
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.81
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.8
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.8
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.8
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.79
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.78
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.77
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.76
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.76
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.75
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.75
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.75
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.74
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.73
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.72
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.67
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.66
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.66
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.66
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.65
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.65
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.64
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.61
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.6
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.57
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.56
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.54
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.53
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.52
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.52
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.5
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.39
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.38
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.27
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.25
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.25
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.09
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.96
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.9
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.9
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.87
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.84
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.83
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.82
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.72
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.51
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.46
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.45
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.45
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.4
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.4
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.38
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.07
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.07
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.0
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.92
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.89
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.7
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.47
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.42
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.4
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.38
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.38
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.37
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.37
2xxa_A	433	Signal recognition particle protein; protein trans	97.35
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.32
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.31
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.28
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.23
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.23
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.21
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.2
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.2
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.19
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.19
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.15
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.15
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.12
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.12
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.11
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.08
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.06
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.06
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.06
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.05
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.02
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.02
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.01
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.0
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.99
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.99
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.99
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.97
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.97
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.96
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.95
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.95
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.94
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.94
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.93
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.9
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.9
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.9
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.9
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.9
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.89
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.89
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.88
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.88
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.88
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.86
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.86
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.86
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.85
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.85
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.85
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.84
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.84
1via_A	175	Shikimate kinase; structural genomics, transferase	96.83
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.83
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.83
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.82
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.82
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.81
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.81
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.8
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.8
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.8
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.8
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.79
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.79
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.78
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.78
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.78
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.77
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.76
1g6h_A	257	High-affinity branched-chain amino acid transport	96.75
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.75
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.75
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.75
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.74
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.74
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.74
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.73
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.72
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.72
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.72
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.71
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.71
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.71
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.71
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.71
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.69
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.69
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.69
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.69
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.69
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.68
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.68
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.68
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.68
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.67
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.67
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.66
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.65
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.65
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.65
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.64
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.62
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.62
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.62
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.61
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.59
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.58
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.58
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.58
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.58
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.57
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.57
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.57
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.55
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.54
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.51
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.5
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.5
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.5
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.47
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.46
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.46
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.45
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.43
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.43
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.42
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.42
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.41
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.4
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.39
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.39
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.39
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.39
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.38
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.38
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.37
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.37
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.36
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.36
3bos_A	242	Putative DNA replication factor; P-loop containing	96.35
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.35
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.35
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.35
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.35
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.33
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.32
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.32
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.32
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.3
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.3
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.29
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.27
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.27
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.26
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.22
2og2_A	359	Putative signal recognition particle receptor; nuc	96.21
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.21
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.18
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.16
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.14
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.13
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.13
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.12
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.11
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.1
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.1
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.1
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.09
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.08
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.08
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.07
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.06
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.05
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.02
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.02
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.02
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.01
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.0
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.99
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.98
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.95
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.95
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.93
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.92
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.88
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.87
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.86
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.84
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.83
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.81
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.8
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.77
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.73
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.72
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.71
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.7
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.68
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.68
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.67
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.67
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.67
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.65
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.62
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	95.61
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.61
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.58
3co5_A	143	Putative two-component system transcriptional RES	95.58
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.58
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	95.58
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.57
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	95.57
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.56
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.54
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.52
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.52
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.52
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.51
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.48
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.45
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.45
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.45
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.44
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.44
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.43
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.42
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.41
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.41
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.4
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.39
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.39
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.37
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.35
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.33
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.33
2fna_A	357	Conserved hypothetical protein; structural genomic	95.31
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.3
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.3
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.29
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.28
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.28
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.27
2qgz_A	308	Helicase loader, putative primosome component; str	95.27
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	95.23
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.22
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.21
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.21
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.17
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.15
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.15
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.15
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.14
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.13
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.13
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.11
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.09
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.09

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=1.8e-41  Score=244.93  Aligned_cols=165  Identities=30%  Similarity=0.513  Sum_probs=139.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-ceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      .+.+||+|+|.+|||||||+++|..+.+...+.||.+. .......+++..+.++||||+|+++|.+++..+++++++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            36789999999999999999999999999999999874 45667778888999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.+|+.+ ..|+..+.... ++.|+++|+||+|+.+.+.          ++.+++++++..+++ +|+||||+
T Consensus        91 lv~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~SAk  158 (216)
T 4dkx_A           91 VVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAK  158 (216)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTT
T ss_pred             EEeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCc----------ccHHHHhhHHHHhCC-eeEEEeCC
Confidence            99999999999999 67777776554 7899999999999987664          899999999999998 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029144          162 TQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (198)
                      +|.||+++|..|++.+...
T Consensus       159 tg~nV~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          159 AGYNVKQLFRRVAAALPGM  177 (216)
T ss_dssp             TTBSHHHHHHHHHHHC---
T ss_pred             CCcCHHHHHHHHHHHHHhh
Confidence            9999999999999988643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.6e-38  Score=229.41  Aligned_cols=196  Identities=79%  Similarity=1.243  Sum_probs=154.0

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      |+..+.+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|..++..+++++|+
T Consensus         4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   83 (212)
T 2j0v_A            4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADI   83 (212)
T ss_dssp             CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSE
T ss_pred             CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCE
Confidence            77788999999999999999999999999988888899888887777788888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      +++|||++++.++..+...|+..+....++.|+++|+||+|+.+.......  ....+..+++..++..++..+|+++||
T Consensus        84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (212)
T 2j0v_A           84 FVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECSS  161 (212)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEccC
Confidence            999999999999999855899999888789999999999999765421000  111347788889999988668999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCcchHH---hhccccCCcccC
Q 029144          161 KTQQNVKAVFDAAIKVVLQPPKNKKK---KKRKAQKACSIL  198 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~~~~~~---~~~~~~~~c~~~  198 (198)
                      ++|.|++++|+++++.+.....++..   .+++++..|+++
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~  202 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIA  202 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC---------------------
T ss_pred             CCCCCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEe
Confidence            99999999999999999877665542   223334467764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=3.1e-36  Score=212.15  Aligned_cols=172  Identities=28%  Similarity=0.419  Sum_probs=151.1

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      |+..+.+||+++|.+|+|||||++++..+.+...+.++.+..+...+.+++..+.+.+||+||++.|...+..+++++|+
T Consensus         1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            77888999999999999999999999999998889999988887788889999999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC  158 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (198)
                      +++|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+...          +..+++..++..+++ +++++
T Consensus        81 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~  148 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLES  148 (181)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcce----------ecHHHHHHHHHHhCC-cEEEE
Confidence            9999999999999998 67777776554  4899999999999976554          788899999999998 79999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCCcch
Q 029144          159 SSKTQQNVKAVFDAAIKVVLQPPKNK  184 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~~~~~  184 (198)
                      ||+++.|++++|.++++.+.......
T Consensus       149 Sa~~~~~v~~l~~~l~~~~~~~~~~~  174 (181)
T 3t5g_A          149 SAKENQTAVDVFRRIILEAEKMDGAC  174 (181)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHTC----
T ss_pred             ecCCCCCHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999998766543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=5e-36  Score=213.49  Aligned_cols=173  Identities=42%  Similarity=0.797  Sum_probs=154.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ..+.+||+++|.+|+|||||++++.++.+...+.+|.+..+...+.+++..+.+.+||+||++.|...+..+++++|+++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            34679999999999999999999999999888899998888888888999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      +|||++++.++..+...|...+....++.|+++|+||+|+.++.        .+.+..+++..++...++..++++||++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  171 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDG--------SDDVTKQEGDDLCQKLGCVAYIEASSVA  171 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTT--------TTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCC--------CCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence            99999999999997678999998888899999999999997531        1237788899999999985599999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCcc
Q 029144          163 QQNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~~~  183 (198)
                      |.|++++|+++++.+......
T Consensus       172 ~~gi~~l~~~l~~~i~~~~~~  192 (194)
T 3reg_A          172 KIGLNEVFEKSVDCIFSNKPV  192 (194)
T ss_dssp             TBSHHHHHHHHHHHHHCSCC-
T ss_pred             CCCHHHHHHHHHHHHHhcCCC
Confidence            999999999999998776543

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=1.6e-36  Score=214.74  Aligned_cols=182  Identities=34%  Similarity=0.576  Sum_probs=148.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ++.+||+++|.+|+|||||++++.++.+...+.++....+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            46799999999999999999999999988888888887778888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++..+ ..|...+....  ++.|+++|+||+|+.+..           +..+++..++...+. +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~  148 (189)
T 4dsu_A           82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAK  148 (189)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence            9999999999988 67777776644  589999999999997543           677888899999998 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCcchH----HhhccccCCcccC
Q 029144          162 TQQNVKAVFDAAIKVVLQPPKNKK----KKKRKAQKACSIL  198 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~~~~----~~~~~~~~~c~~~  198 (198)
                      +|.|++++|+++.+.+.....+..    +.+++++.+|.||
T Consensus       149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~  189 (189)
T 4dsu_A          149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM  189 (189)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred             CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence            999999999999998865544332    2445556678876

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.2e-36  Score=217.96  Aligned_cols=181  Identities=27%  Similarity=0.483  Sum_probs=143.8

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      |...+.+||+++|.+|+|||||++++.++.+...+.++.+..+.....+++..+.+.+||+||++.+...+..+++++|+
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            55678999999999999999999999999998888888887776667777777889999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC  158 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (198)
                      +++|||++++.++..+ ..|+..+....  ++.|+++|+||+|+.+...          +..+++..++...+. +++++
T Consensus        99 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  166 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPERE----------VQAVEGKKLAESWGA-TFMES  166 (201)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred             EEEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence            9999999999999998 78877777653  5799999999999987654          788889999999998 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCCCcchHHhhccccCCcccC
Q 029144          159 SSKTQQNVKAVFDAAIKVVLQPPKNKKKKKRKAQKACSIL  198 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~c~~~  198 (198)
                      ||++|.|++++|.+|.+.+.......     +.++.|.+|
T Consensus       167 Sa~~~~~v~~l~~~l~~~i~~~~~~~-----~~~~~c~l~  201 (201)
T 3oes_A          167 SARENQLTQGIFTKVIQEIARVENSY-----GQERRCHLM  201 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHC------------------
T ss_pred             eCCCCCCHHHHHHHHHHHHHhhhhhh-----ccccccccC
Confidence            99999999999999999987654443     233448775

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=1.7e-36  Score=213.55  Aligned_cols=179  Identities=91%  Similarity=1.425  Sum_probs=134.4

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      |++.+.+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++++...+..+++++|+
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   82 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV   82 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence            67788999999999999999999999999888888888876665555667777888999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      +++|||++++.+++.+...|+..+....++.|+++|+||+|+.+.............+..+++..++...+..+|+++||
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           83 FILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            99999999999999985579988888777999999999999976543111111223357788889999888768999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029144          161 KTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++|.|++++|+++++.+..
T Consensus       163 ~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998765

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.2e-35  Score=210.07  Aligned_cols=176  Identities=55%  Similarity=0.996  Sum_probs=151.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||+++|...+..+++++|++++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   95 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   95 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence            46799999999999999999999999988888899888777777788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++..+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..++...+..+|+++||+
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  175 (194)
T 2atx_A           96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  175 (194)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence            9999999999998558888888887899999999999997642100  01112234778889999999887679999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      +|.|++++|+++++.+..
T Consensus       176 ~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          176 TQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999998764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=3e-35  Score=207.68  Aligned_cols=181  Identities=65%  Similarity=1.056  Sum_probs=153.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.++|+++|.+|+|||||++++..+.+...+.++....+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            46799999999999999999999999988888888887777778889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++......|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..++...+..+++++||+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  162 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence            9999999999998557888888877799999999999997642100  00011234677888889998887689999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCcch
Q 029144          162 TQQNVKAVFDAAIKVVLQPPKNK  184 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~~~  184 (198)
                      +|.|++++|+++.+.+.....++
T Consensus       163 ~g~gi~~l~~~l~~~~~~~~~~k  185 (186)
T 1mh1_A          163 TQRGLKTVFDEAIRAVLCPPPVK  185 (186)
T ss_dssp             TCTTHHHHHHHHHHHHSCCCC--
T ss_pred             CccCHHHHHHHHHHHHhcccccC
Confidence            99999999999999998776544

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=9.8e-36  Score=213.59  Aligned_cols=164  Identities=32%  Similarity=0.557  Sum_probs=147.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.++|+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   91 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   91 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence            35789999999999999999999999988888888887777778888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++..+ ..|+..+....  .+.|+++|+||+|+.+...          +..+++..++..++. +++++||+
T Consensus        92 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  159 (206)
T 2bov_A           92 VFSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAK  159 (206)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCcccccc----------ccHHHHHHHHHHhCC-eEEEEeCC
Confidence            9999999999998 77877777765  3899999999999977543          778888999999988 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      +|.|++++|.+|++.+..
T Consensus       160 ~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          160 TRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998854

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=1.3e-35  Score=214.51  Aligned_cols=180  Identities=36%  Similarity=0.650  Sum_probs=150.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.+|+|||||+++|..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|...+..+++++|++|+
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL  104 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence            35799999999999999999999999999888999988887777788888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++..+...|+..+....++.|+++|+||+|+.++....  ......+.+..+++..++...++.+|+++||+
T Consensus       105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~  184 (214)
T 3q3j_B          105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF  184 (214)
T ss_dssp             EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence            9999999999985589999999888899999999999997631000  00011234788899999999998679999999


Q ss_pred             CCCC-HHHHHHHHHHHHcCCCcc
Q 029144          162 TQQN-VKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       162 ~~~~-i~~~~~~i~~~~~~~~~~  183 (198)
                      +|.| ++++|..+++.+......
T Consensus       185 ~g~g~v~~lf~~l~~~~~~~~~~  207 (214)
T 3q3j_B          185 TSEKSIHSIFRTASMLCLNKPSP  207 (214)
T ss_dssp             TCHHHHHHHHHHHHHHHHC----
T ss_pred             CCcccHHHHHHHHHHHHhccCcC
Confidence            9998 999999999998766543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=2.8e-35  Score=210.66  Aligned_cols=178  Identities=53%  Similarity=0.887  Sum_probs=143.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ..+.+||+++|.+|+|||||++++.++.+...+.+|++..+...+.+++..+.+.+||+||++.|..++..+++++|+++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            45689999999999999999999999988888888888877777888888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      +|||++++.++..+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..++...+..+|+++||
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  176 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA  176 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence            99999999999998557988888887899999999999997632100  0001123467788889999888768999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCC
Q 029144          161 KTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ++|.|++++|+++++.+...
T Consensus       177 ~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          177 LTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999988643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=3.2e-35  Score=207.67  Aligned_cols=177  Identities=37%  Similarity=0.709  Sum_probs=149.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +...+||+++|.+|+|||||++++..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|...+..+++++|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            45789999999999999999999999998888888887777667777888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      +|||++++.++..+...|...+....++.|+++|+||+|+.++....  ......+.++.+++..++..++..+|+++||
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  163 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  163 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence            99999999999988678888888877899999999999997531100  0011223477888999999988558999999


Q ss_pred             C-CCCCHHHHHHHHHHHHcC
Q 029144          161 K-TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~-~~~~i~~~~~~i~~~~~~  179 (198)
                      + ++.|++++|+.+++.+..
T Consensus       164 ~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          164 LQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCHHHHHHHHHHHHhc
Confidence            9 689999999999998764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=5.8e-35  Score=206.99  Aligned_cols=164  Identities=25%  Similarity=0.434  Sum_probs=141.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +.+.+||+++|.+|+|||||++++..+.+...+.+|.+..+.....+++..+.+.+||+||++.+... ..+++++|+++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            45789999999999999999999999998888899988777777788888999999999999988875 56889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC  158 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (198)
                      +|||++++.++..+ ..|+..+....    ++.|+++|+||+|+.+...          ++.+++.+++...++ +|+++
T Consensus        97 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~  164 (187)
T 3c5c_A           97 VVYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQ----------VTKAEGVALAGRFGC-LFFEV  164 (187)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCc----------cCHHHHHHHHHHcCC-cEEEE
Confidence            99999999999998 67877777653    5899999999999976543          778889999999998 89999


Q ss_pred             cc-CCCCCHHHHHHHHHHHHcC
Q 029144          159 SS-KTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       159 Sa-~~~~~i~~~~~~i~~~~~~  179 (198)
                      || +++.|++++|+.+++.+.+
T Consensus       165 Sa~~~g~gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          165 SACLDFEHVQHVFHEAVREARR  186 (187)
T ss_dssp             CSSSCSHHHHHHHHHHHHHHHC
T ss_pred             eecCccccHHHHHHHHHHHHhh
Confidence            99 8999999999999998753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.8e-35  Score=210.13  Aligned_cols=167  Identities=26%  Similarity=0.455  Sum_probs=143.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ....++|+++|.+|+|||||++++..+.+...+.++....+......++..+.+.+||+||++.+...+..+++++|+++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            34679999999999999999999999988877888877666666777888899999999999999999989999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS  159 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (198)
                      +|||++++.++..+ ..|...+....   ++.|+++|+||+|+.+..           +..+++..++..++. +++++|
T Consensus        85 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~S  151 (199)
T 2gf0_A           85 LVFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC-AFMETS  151 (199)
T ss_dssp             EEEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHHTC-EEEECB
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----------cCHHHHHHHHHHhCC-eEEEEe
Confidence            99999999999888 55655555432   478999999999997532           567788888888887 799999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCCc
Q 029144          160 SKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      |++|.|++++|++|++.+.....
T Consensus       152 a~~~~gi~~l~~~l~~~~~~~~~  174 (199)
T 2gf0_A          152 AKMNYNVKELFQELLTLETRRNM  174 (199)
T ss_dssp             TTTTBSHHHHHHHHHHHCSSSCE
T ss_pred             cCCCCCHHHHHHHHHHHHhhhhc
Confidence            99999999999999998866543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.6e-34  Score=205.96  Aligned_cols=180  Identities=49%  Similarity=0.845  Sum_probs=146.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ....+||+++|.+|+|||||++++..+.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            34678999999999999999999999998888888887777667788888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      +|||++++.++..+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..++...+..+++++||
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  181 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA  181 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence            99999999999988678888888877899999999999997642100  0001112367778888998888768999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCc
Q 029144          161 KTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      ++|.|++++|++|.+.+.....
T Consensus       182 ~~g~gi~el~~~l~~~i~~~~~  203 (207)
T 2fv8_A          182 KTKEGVREVFETATRAALQKRY  203 (207)
T ss_dssp             TTCTTHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999876543

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=209.54  Aligned_cols=177  Identities=45%  Similarity=0.860  Sum_probs=131.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.+|+|||||++++..+.+...+.+|....+...+.+++..+.+.+||+||++.|...+..+++++|++++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL  111 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence            35799999999999999999999999888888888877777778888988999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++..+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..++...+..+++++||+
T Consensus       112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  191 (214)
T 2j1l_A          112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR  191 (214)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence            9999999999998557988888877899999999999997653100  00011224677888999999887689999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029144          162 TQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (198)
                      +|.|++++|++|++.+...
T Consensus       192 ~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          192 LHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             TTBSHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999988654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=203.26  Aligned_cols=168  Identities=31%  Similarity=0.555  Sum_probs=145.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      .++.+||+++|.+|+|||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            3467999999999999999999999988877777776544 456677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      ++|+|++++.++..+ ..|+..+....++.|+++|+||+|+.+...          +..+++..++...+. +++++||+
T Consensus        86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  153 (181)
T 3tw8_B           86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKV----------VETEDAYKFAGQMGI-QLFETSAK  153 (181)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhcc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence            999999999999998 788888888888999999999999987654          677888999999998 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCc
Q 029144          162 TQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      +|.|++++|+++.+.+.....
T Consensus       154 ~~~gi~~l~~~l~~~~~~~~~  174 (181)
T 3tw8_B          154 ENVNVEEMFNCITELVLRAKK  174 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999998865433

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=5.5e-34  Score=204.11  Aligned_cols=176  Identities=50%  Similarity=0.876  Sum_probs=150.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ...+||+++|.+|+|||||++++..+.+...+.++.+..+...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            35789999999999999999999999988888888877776777888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++......|...+....++.|+++|+||+|+.+.....  ......+.+..+++..++...+..+++++||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK  182 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence            9999999999988678888888877899999999999997652110  01111234677888899999887679999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      +|.|++++|++|++.+.+
T Consensus       183 ~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          183 TKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999998753

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1.9e-34  Score=203.33  Aligned_cols=163  Identities=34%  Similarity=0.539  Sum_probs=146.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.+|+|||||++++..+.+...+.++....+.....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   95 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   95 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            35799999999999999999999999988888898888788888889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++..+ ..|+..+...  ..+.|+++|+||+|+.+...          +..++++.++..++. +|+++||+
T Consensus        96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  163 (183)
T 3kkq_A           96 VYSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAK  163 (183)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCS
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccC----------cCHHHHHHHHHHhCC-eEEEeccC
Confidence            9999999999988 6777766543  25899999999999976554          788899999999997 79999999


Q ss_pred             -CCCCHHHHHHHHHHHHc
Q 029144          162 -TQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       162 -~~~~i~~~~~~i~~~~~  178 (198)
                       ++.|++++|+++.+.+.
T Consensus       164 ~~~~~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          164 DPPLNVDKTFHDLVRVIR  181 (183)
T ss_dssp             SSCBSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence             99999999999998775

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=7e-34  Score=204.16  Aligned_cols=168  Identities=30%  Similarity=0.601  Sum_probs=145.4

Q ss_pred             CC--CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCC
Q 029144            1 MS--ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG   77 (198)
Q Consensus         1 m~--~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~   77 (198)
                      |+  .++.++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++++
T Consensus         1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (206)
T 2bcg_Y            1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG   80 (206)
T ss_dssp             --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence            65  34679999999999999999999999988887777776544 4566778888999999999999999999999999


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           78 ADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      +|++++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++...+. +++
T Consensus        81 ~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~  148 (206)
T 2bcg_Y           81 SHGIIIVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFL  148 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEE
T ss_pred             CCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEE
Confidence            9999999999999999998 77888887765 6899999999999976543          677888889988887 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ++||++|.|++++|.++.+.+...
T Consensus       149 ~~Sa~~g~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          149 ETSALDSTNVEDAFLTMARQIKES  172 (206)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999987543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-34  Score=207.95  Aligned_cols=176  Identities=37%  Similarity=0.713  Sum_probs=148.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ...+||+++|.+|+|||||+++|..+.+...+.+|.+..+...+.+++..+.+.+||+||++.|...+..+++++|++++
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il  105 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI  105 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence            46799999999999999999999999988888888877776667778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++..+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..++...+..+|+++||+
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  185 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  185 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence            9999999999988668888888877899999999999997531100  00112234778889999999885589999999


Q ss_pred             -CCCCHHHHHHHHHHHHcC
Q 029144          162 -TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 -~~~~i~~~~~~i~~~~~~  179 (198)
                       ++.|++++|+.+++.+..
T Consensus       186 ~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          186 QSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhh
Confidence             689999999999998753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=4.3e-34  Score=199.03  Aligned_cols=165  Identities=29%  Similarity=0.595  Sum_probs=136.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      .++.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            46789999999999999999999999988777777776554 45566778889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++|+|++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++...+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1z08_A           83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecC
Confidence            999999999999988 67877776654 5899999999999977543          677888999999887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029144          161 KTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++|.|++++|+++.+.+.+
T Consensus       151 ~~~~gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          151 KQNKGIEELFLDLCKRMIE  169 (170)
T ss_dssp             TTTBSHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999998753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=3.2e-34  Score=202.71  Aligned_cols=164  Identities=23%  Similarity=0.349  Sum_probs=140.5

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      ...+.+||+++|.+|+|||||++++..+.+...+.+|. ..+...+.+++..+.+.+||++|++.|.     +++++|++
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~   89 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV   89 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence            34578999999999999999999999999888887774 4556778889999999999999998877     67889999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS  159 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (198)
                      ++|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+....        .+.+..+++..++...+..+|+++|
T Consensus        90 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~S  160 (184)
T 3ihw_A           90 VFVFSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAAN--------PRVIDDSRARKLSTDLKRCTYYETC  160 (184)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccc--------ccccCHHHHHHHHHHcCCCeEEEec
Confidence            999999999999998 67888887764  589999999999995321        1237888899999999744899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCC
Q 029144          160 SKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~  180 (198)
                      |++|.|++++|+++++.+...
T Consensus       161 a~~~~gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          161 ATYGLNVERVFQDVAQKVVAL  181 (184)
T ss_dssp             TTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999987644

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=3.2e-34  Score=199.03  Aligned_cols=163  Identities=28%  Similarity=0.530  Sum_probs=142.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|.+|+|||||++++.++.+...+.+|.+..+.....+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999999888888888877777777788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ||++++.++..+ ..|+..+...  .++.|+++|+||+|+.+...          +..+++..++...+..+++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~Sa~~  150 (167)
T 1c1y_A           82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECcccccccc----------CCHHHHHHHHHHccCCcEEEecCCC
Confidence            999999999988 6676666554  25899999999999976543          6778888888887434899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029144          163 QQNVKAVFDAAIKVVL  178 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~  178 (198)
                      |.|++++|+++.+.+.
T Consensus       151 ~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          151 KINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998774

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=2.1e-34  Score=206.72  Aligned_cols=174  Identities=65%  Similarity=1.076  Sum_probs=148.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.+|+|||||++++..+.+...+.++..+.+...+.+++..+.+.+||+||++.|...+..+++++|++++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  107 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  107 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            46799999999999999999999999998888899888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++......|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..++...+..+++++||+
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  187 (204)
T 4gzl_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCC
Confidence            9999999999998558999998888899999999999997653210  01112233677888899999998789999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029144          162 TQQNVKAVFDAAIKVV  177 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~  177 (198)
                      +|.|++++|+++++.+
T Consensus       188 ~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          188 TQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TCTTHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999999865

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=1.6e-34  Score=202.91  Aligned_cols=165  Identities=21%  Similarity=0.313  Sum_probs=137.8

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      |+..+.+||+++|.+|+|||||++++.++.+.. +.+|.+..+...+.+++..+.+.+||+||+++     ..+++++|+
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~   75 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADA   75 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSE
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCE
Confidence            777889999999999999999999999998876 77888877777788888889999999999976     356788999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhh---C-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHY---A-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      +++|||++++.++..+ ..|+..+...   . ++.|+++|+||+|+.+..        .+.+..+++..++...+..+++
T Consensus        76 ~ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~  146 (178)
T 2iwr_A           76 VIFVFSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALXADMKRCSYY  146 (178)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTB--------CCCSCHHHHHHHHHHHSSEEEE
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccc--------cCcCCHHHHHHHHHhhcCCeEE
Confidence            9999999999999998 6665444432   2 589999999999995311        1236778888888887434899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ++||++|.|++++|+++++.+...
T Consensus       147 ~~Sa~~~~~i~~lf~~l~~~~~~~  170 (178)
T 2iwr_A          147 ETXATYGLNVDRVFQEVAQKVVTL  170 (178)
T ss_dssp             EEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EEeccccCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988653

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=3.2e-34  Score=198.99  Aligned_cols=163  Identities=32%  Similarity=0.564  Sum_probs=142.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|.+|+|||||++++.++.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence            46899999999999999999999998888888888877777778888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ||++++.++... ..|+..+....  .+.|+++|+||+|+.+...          +..+++..++...+. +++++||++
T Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  150 (168)
T 1u8z_A           83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT  150 (168)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence            999999999988 77777776654  3899999999999976543          677888999998887 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      +.|++++|+++.+.+.+
T Consensus       151 ~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999998753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=6.8e-35  Score=205.63  Aligned_cols=165  Identities=29%  Similarity=0.609  Sum_probs=115.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +..++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.|...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            4679999999999999999999998887766667665444 456677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++...+. +++++||+
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  153 (183)
T 2fu5_C           86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAK  153 (183)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC-
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCc----------CCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999999988 67888877764 6899999999999976543          678888999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029144          162 TQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (198)
                      ++.|++++|.+|.+.+...
T Consensus       154 ~~~~i~~l~~~l~~~i~~~  172 (183)
T 2fu5_C          154 ANINVENAFFTLARDIKAK  172 (183)
T ss_dssp             --CCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-33  Score=205.83  Aligned_cols=169  Identities=30%  Similarity=0.525  Sum_probs=138.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      .+..++|+++|.+|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.|...+..+++++|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            34679999999999999999999999988877777776544 45567788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      |+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++...+. +++++||
T Consensus        90 ilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  157 (223)
T 3cpj_B           90 LIVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRA----------VPTEESKTFAQENQL-LFTETSA  157 (223)
T ss_dssp             EEEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCC
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999998 78888887765 5899999999999976543          677888889988887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCcc
Q 029144          161 KTQQNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~~~  183 (198)
                      +++.|++++|++|++.+......
T Consensus       158 ~~~~gi~~l~~~l~~~i~~~~~~  180 (223)
T 3cpj_B          158 LNSENVDKAFEELINTIYQKVSK  180 (223)
T ss_dssp             C-CCCHHHHHHHHHHHHTTCC--
T ss_pred             CCCCCHHHHHHHHHHHHHHHhhh
Confidence            99999999999999998765443

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=5e-34  Score=200.50  Aligned_cols=166  Identities=31%  Similarity=0.537  Sum_probs=146.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.++|+++|.+|+|||||++++.++.+...+.+|.+..+...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL   86 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEE
Confidence            46799999999999999999999999988888899888777778888888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHH-hhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPEL-RHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~-~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++..+ ..|+..+ .... .+.|+++|+||+|+.+...          +..+++..++...+. +++++||+
T Consensus        87 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  154 (181)
T 2fn4_A           87 VFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASAK  154 (181)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-eEEEecCC
Confidence            9999999999988 5666665 4333 5899999999999977543          677888888888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 029144          162 TQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (198)
                      +|.|++++|++|.+.+....
T Consensus       155 ~~~gv~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          155 LRLNVDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             TTBSHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999886433

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.2e-33  Score=198.68  Aligned_cols=166  Identities=33%  Similarity=0.566  Sum_probs=143.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      .+.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   89 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   89 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence            4579999999999999999999999988777777765444 455667888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.+++.. ..|+..+.... ++.|+++|+||+|+.+...          +..++++.++...+. +++++||+
T Consensus        90 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  157 (181)
T 2efe_B           90 IVFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARK----------VTAEDAQTYAQENGL-FFMETSAK  157 (181)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEECCSS
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCccccccc----------CCHHHHHHHHHHcCC-EEEEEECC
Confidence            99999999999988 78877777765 6899999999999976543          677888999999888 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 029144          162 TQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (198)
                      +|.|++++|.+|.+.+...+
T Consensus       158 ~g~gi~~l~~~l~~~~~~~~  177 (181)
T 2efe_B          158 TATNVKEIFYEIARRLPRVQ  177 (181)
T ss_dssp             SCTTHHHHHHHHHHTCC---
T ss_pred             CCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999886654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=1.9e-34  Score=206.54  Aligned_cols=165  Identities=30%  Similarity=0.539  Sum_probs=138.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ++.+||+++|.+|+|||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||+||+++|...+..+++++|++|
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            4579999999999999999999999988777777775444 566778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++++++...++.+++++||+
T Consensus       107 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~  175 (201)
T 2hup_A          107 LAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELRE----------VSLAEAQSLAEHYDILCAIETSAK  175 (201)
T ss_dssp             EEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTCSEEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCccccccc----------cCHHHHHHHHHHcCCCEEEEEeCC
Confidence            99999999999988 68888887765 6899999999999976543          778888999999887679999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      ++.|++++|.+|++.+..
T Consensus       176 ~g~gi~~l~~~l~~~i~~  193 (201)
T 2hup_A          176 DSSNVEEAFLRVATELIM  193 (201)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998864

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=9.2e-34  Score=197.14  Aligned_cols=165  Identities=30%  Similarity=0.552  Sum_probs=142.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      +.+.+||+++|.+|+|||||++++..+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            34679999999999999999999999988777777775444 45566788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++|+|++++.++... ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++...+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1r2q_A           83 IVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccc----------cCHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999988 67777776654 6899999999999976543          677888889888887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029144          161 KTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++|.|++++|++|.+.+.+
T Consensus       151 ~~g~gi~~l~~~i~~~~~~  169 (170)
T 1r2q_A          151 KTSMNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTCTTHHHHHHHHHHTSCC
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999987643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=7.6e-34  Score=197.31  Aligned_cols=165  Identities=35%  Similarity=0.544  Sum_probs=143.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      .++.+||+++|.+|+|||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus         2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   81 (168)
T 1z2a_A            2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC   81 (168)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred             CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence            3568999999999999999999999998887777777544 456667788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      ++|+|++++.+++.+ ..|+..+....++.|+++|+||+|+.+...          +..+++..++...+. +++++||+
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  149 (168)
T 1z2a_A           82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVK  149 (168)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEecC
Confidence            999999999999888 678777776657899999999999976543          677888889999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      ++.|++++|++|.+.+.+
T Consensus       150 ~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          150 EDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             TTBSSHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999999998754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=1.2e-33  Score=198.24  Aligned_cols=165  Identities=32%  Similarity=0.600  Sum_probs=144.3

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      .++.+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            34679999999999999999999999988877777776444 55566788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++|+|++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++++++...+. +++++||
T Consensus        92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  159 (179)
T 1z0f_A           92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASA  159 (179)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCT
T ss_pred             EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999888 78887777765 6899999999999976543          677888999999987 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029144          161 KTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (198)
                      +++.|++++|+++++.+.+
T Consensus       160 ~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          160 KTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TTCTTHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHhh
Confidence            9999999999999998754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.4e-34  Score=204.20  Aligned_cols=164  Identities=29%  Similarity=0.581  Sum_probs=144.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ++.+||+++|.+|+|||||++++..+.+...+.+|.+.. ....+.+++..+.+.+||+||++.|...+..+++++|+++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            357999999999999999999999998877777777543 4556778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...          +..+++..++...+. +++++||+
T Consensus       104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  171 (201)
T 2ew1_A          104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAK  171 (201)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999988 78888887765 5799999999999976543          677888888888887 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      +|.|++++|.++++.+..
T Consensus       172 ~g~gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          172 ESDNVEKLFLDLACRLIS  189 (201)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998864

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=3.7e-34  Score=200.85  Aligned_cols=168  Identities=27%  Similarity=0.410  Sum_probs=142.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECC-eEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDG-STVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      ..+.+||+++|.+|+|||||++++.++.+...+.+|.+ +.....+.+++ ..+.+.+||+||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45789999999999999999999999887766667765 34456666765 67899999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC---CCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYA---PGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      +++|||++++.+++.+ ..|+..+....   .+.| +++|+||+|+.+...          +..+++..++...+. +++
T Consensus        83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~  150 (178)
T 2hxs_A           83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT----------IKPEKHLRFCQENGF-SSH  150 (178)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEE
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEccccccccc----------cCHHHHHHHHHHcCC-cEE
Confidence            9999999999999888 67877777643   2455 899999999976543          677888899999888 899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      ++||++|.|++++|.+|.+.+.....
T Consensus       151 ~~Sa~~~~gi~~l~~~l~~~~~~~~~  176 (178)
T 2hxs_A          151 FVSAKTGDSVFLCFQKVAAEILGIKL  176 (178)
T ss_dssp             EECTTTCTTHHHHHHHHHHHHTTCCC
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999876653

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=4.3e-33  Score=197.52  Aligned_cols=165  Identities=33%  Similarity=0.635  Sum_probs=144.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      .+..+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            34579999999999999999999999988777777775444 45566778889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..++++.++...++ +++++||
T Consensus        99 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  166 (189)
T 2gf9_A           99 LLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERV----------VPAEDGRRLADDLGF-EFFEASA  166 (189)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccC----------CCHHHHHHHHHHcCC-eEEEEEC
Confidence            999999999999888 77888887765 6899999999999976543          677888999999998 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029144          161 KTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++|.|++++|++|.+.+.+
T Consensus       167 ~~g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          167 KENINVKQVFERLVDVICE  185 (189)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=8.3e-34  Score=201.56  Aligned_cols=164  Identities=30%  Similarity=0.595  Sum_probs=140.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      .+.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            4679999999999999999999999988777777765444 456777888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+...          +..++++.++...+. +++++||+
T Consensus        99 ~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  166 (191)
T 2a5j_A           99 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAK  166 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999988 67887777654 6899999999999976543          677888999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      ++.|++++|++|++.+.+
T Consensus       167 ~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          167 TACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998863

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=201.02  Aligned_cols=168  Identities=30%  Similarity=0.592  Sum_probs=146.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +..+||+++|.+|+|||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            357899999999999999999999998887777777544 4566778888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++...+. +++++||+
T Consensus        94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  161 (196)
T 3tkl_A           94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK  161 (196)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEEECTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHcCC-cEEEEeCC
Confidence            99999999999998 77888887765 5899999999999977654          777888999999998 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCcc
Q 029144          162 TQQNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~~  183 (198)
                      ++.|++++|.+|.+.+......
T Consensus       162 ~g~gv~~l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          162 NATNVEQSFMTMAAEIKKRMGP  183 (196)
T ss_dssp             TCTTHHHHHHHHHHHHHHHC--
T ss_pred             CCCCHHHHHHHHHHHHHHHhcc
Confidence            9999999999999988654443

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=8.2e-34  Score=198.47  Aligned_cols=164  Identities=24%  Similarity=0.370  Sum_probs=129.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccC--cccccccccCCCcEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--YNRLRPLSYRGADVF   81 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--~~~~~~~~~~~~~~~   81 (198)
                      .+.+||+++|.+|+|||||++++.+..+...+.+...+.....+.+++..+.+.+||+||++.  +...+..+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            457999999999999999999999887765544333344566677888889999999999987  566667788999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS  159 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (198)
                      ++|||++++.++..+ ..|...+....  ++.|+++|+||+|+.+.+.          +..++++.++...+. +++++|
T Consensus        82 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S  149 (175)
T 2nzj_A           82 VIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCRE----------VSVEEGRACAVVFDC-KFIETS  149 (175)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCC----------SCHHHHHHHHHHHTS-EEEECB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhccccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence            999999999999988 67777776643  5899999999999976543          677788888888887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcC
Q 029144          160 SKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~  179 (198)
                      |++|.|++++|++|.+.+..
T Consensus       150 a~~g~gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          150 ATLQHNVAELFEGVVRQLRL  169 (175)
T ss_dssp             TTTTBSHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998753

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-33  Score=195.82  Aligned_cols=167  Identities=35%  Similarity=0.627  Sum_probs=135.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      .++.++|+++|.+|+|||||++++.++.+. ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            346899999999999999999999998874 45566665444 3445678888999999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS  159 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (198)
                      +++|+|++++.++..+ ..|+..+.... .+.|+++|+||+|+.+...          +..+++..++...+. +++++|
T Consensus        87 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~S  154 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETS  154 (180)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCcccc----------cCHHHHHHHHHHcCC-eEEEEe
Confidence            9999999999999888 78888877765 5899999999999986543          677888889988888 799999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCC
Q 029144          160 SKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      |+++.|++++|+++.+.+....
T Consensus       155 a~~~~gi~~l~~~l~~~~~~~~  176 (180)
T 2g6b_A          155 AKTGLNVDLAFTAIAKELKRRS  176 (180)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC--
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999886543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=7.5e-34  Score=200.69  Aligned_cols=164  Identities=29%  Similarity=0.522  Sum_probs=143.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ++.+||+++|.+|+|||||++++.++.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            357999999999999999999999998887777777544 3556677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++...+. +++++||+
T Consensus        88 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  155 (186)
T 2bme_A           88 LVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSAL  155 (186)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence            99999999999988 77877776654 6899999999999976543          677888889998887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      ++.|++++|+++++.+..
T Consensus       156 ~~~gi~~l~~~l~~~~~~  173 (186)
T 2bme_A          156 TGENVEEAFVQCARKILN  173 (186)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998864

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=3.4e-33  Score=194.35  Aligned_cols=164  Identities=26%  Similarity=0.549  Sum_probs=143.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      ..+.+||+++|.+|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            34679999999999999999999999988777777776544 45566788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++|+|++++.++... ..|+..+.... +..|+++|+||+|+.+...          +..+++..++...+. +++++||
T Consensus        83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa  150 (170)
T 1z0j_A           83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSA  150 (170)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCccccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999988 78888887764 7899999999999986543          677888889888887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHc
Q 029144          161 KTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~  178 (198)
                      +++.|++++|.+|.+.+.
T Consensus       151 ~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          151 KNAININELFIEISRRIP  168 (170)
T ss_dssp             TTTBSHHHHHHHHHHHCC
T ss_pred             CCCcCHHHHHHHHHHHHh
Confidence            999999999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.2e-34  Score=202.10  Aligned_cols=166  Identities=29%  Similarity=0.491  Sum_probs=143.4

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      |...+.+||+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++. ...+..+++++|+
T Consensus        23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~  101 (196)
T 2atv_A           23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG  101 (196)
T ss_dssp             ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence            455678999999999999999999999999888888888877777778888889999999999988 7777888899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC  158 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (198)
                      +++|||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+...          +..+++..++...+. +++++
T Consensus       102 iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~  169 (196)
T 2atv_A          102 FVLVYDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYEC  169 (196)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEEC
T ss_pred             EEEEEECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHhCC-eEEEE
Confidence            9999999999999988 67777766543  5899999999999977543          778888899998887 89999


Q ss_pred             ccCCCC-CHHHHHHHHHHHHcC
Q 029144          159 SSKTQQ-NVKAVFDAAIKVVLQ  179 (198)
Q Consensus       159 Sa~~~~-~i~~~~~~i~~~~~~  179 (198)
                      ||++|. |++++|++|++.+.+
T Consensus       170 Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          170 SACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             CTTTCTTCHHHHHHHHHHHHHH
T ss_pred             CCCcCCcCHHHHHHHHHHHHHh
Confidence            999999 999999999998753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.3e-33  Score=195.13  Aligned_cols=166  Identities=33%  Similarity=0.572  Sum_probs=142.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      +.+||+++|.+|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            468999999999999999999999988777777776544 4566778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |+|++++.++... ..|+..+.... ++.|+++|+||+|+.+..       ....+..+++..++...+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~  152 (170)
T 1ek0_A           82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEG-------GERKVAREEGEKLAEEKGL-LFFETSAKT  152 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSS-------CCCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCccccc-------cccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999988 67877777655 689999999999997642       1223677888888888888 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      |.|++++|+++.+.+.+
T Consensus       153 ~~gi~~l~~~l~~~i~~  169 (170)
T 1ek0_A          153 GENVNDVFLGIGEKIPL  169 (170)
T ss_dssp             CTTHHHHHHHHHTTSCC
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999987643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=1.1e-33  Score=196.31  Aligned_cols=161  Identities=24%  Similarity=0.383  Sum_probs=119.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      .+||+++|.+|+|||||++++.+.... ...++.+..+.....+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            589999999999999999999876543 3344555556667788899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |++++.+++.. ..|...+....  ++.|+++|+||+|+.+...          +..+++..++...+. +++++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (166)
T 3q72_A           81 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH  148 (166)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCC----------SCHHHHHHHHHHTTC-EEEECBGGGT
T ss_pred             ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccccccccc----------cCHHHHHHHHHHhCC-cEEEeccCCC
Confidence            99999999998 66766666543  6899999999999987654          788888999999997 8999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029144          164 QNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (198)
                      .|++++|+++.+.+..
T Consensus       149 ~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          149 HNVQALFEGVVRQIRL  164 (166)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999997753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=1.4e-33  Score=199.13  Aligned_cols=163  Identities=32%  Similarity=0.565  Sum_probs=145.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   96 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   96 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEE
Confidence            57999999999999999999999999888888888877777778888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ||++++.++..+ ..|+..+....  .+.|+++|+||+|+.+...          +..++++.++..++. +++++||++
T Consensus        97 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  164 (187)
T 2a9k_A           97 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRAEQWNV-NYVETSAKT  164 (187)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCc----------cCHHHHHHHHHHcCC-eEEEeCCCC
Confidence            999999999988 67777776654  3899999999999976543          677888899999988 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      +.|++++|++|.+.+..
T Consensus       165 ~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          165 RANVDKVFFDLMREIRA  181 (187)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=8.5e-34  Score=196.66  Aligned_cols=162  Identities=30%  Similarity=0.572  Sum_probs=142.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.++|+++|.+|+|||||++++..+.+...+.++....+.....+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            46899999999999999999999999888888888777777788888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      +|++++.++..+ ..|...+....  ++.|+++|+||+|+.+...          +..+++..++...+. +++++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  149 (167)
T 1kao_A           82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS  149 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred             EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCccccccc----------CCHHHHHHHHHHhCC-CEEEecCCC
Confidence            999999999888 66666665543  5899999999999976543          677888889988888 799999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029144          163 QQNVKAVFDAAIKVVL  178 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~  178 (198)
                      |.|++++|+++.+.+.
T Consensus       150 ~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          150 KTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999998763

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.5e-33  Score=202.91  Aligned_cols=164  Identities=24%  Similarity=0.433  Sum_probs=134.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccC-cccccccccCCCcE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV   80 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~~~   80 (198)
                      ...+||+++|.+|+|||||+++|.+.  .+...+.++..+.+...+.+++..+.+.+||++|++. +..+...+++.+++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            45799999999999999999999854  3445544444455667778899889999999999876 55566778899999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC  158 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (198)
                      +++|||++++.+|+.+ ..|...+...  .+++|+++|+||+|+.+.+.          +..++++.++...++ +|+++
T Consensus       115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~----------v~~~e~~~~a~~~~~-~~~e~  182 (211)
T 2g3y_A          115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIET  182 (211)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCce----------EeHHHHHHHHHHcCC-EEEEE
Confidence            9999999999999998 6777666543  25899999999999976543          677788888888887 89999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcC
Q 029144          159 SSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ||++|.|++++|.++++.+..
T Consensus       183 SAk~g~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          183 SAAVQHNVKELFEGIVRQVRL  203 (211)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999998743

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-33  Score=199.13  Aligned_cols=165  Identities=27%  Similarity=0.538  Sum_probs=143.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ++.+||+++|.+|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            4679999999999999999999999988777777776554 444556777889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.+.          +..+++++++...+. +++++||+
T Consensus       101 lV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  168 (192)
T 2fg5_A          101 IVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIRE----------VPLKDAKEYAESIGA-IVVETSAK  168 (192)
T ss_dssp             EEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTTTC-EEEECBTT
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999988 78888887765 5899999999999976443          677889999999987 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029144          162 TQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (198)
                      ++.|++++|++|.+.+...
T Consensus       169 ~~~gi~~l~~~l~~~i~~~  187 (192)
T 2fg5_A          169 NAINIEELFQGISRQIPPL  187 (192)
T ss_dssp             TTBSHHHHHHHHHHTCC--
T ss_pred             CCcCHHHHHHHHHHHHHhh
Confidence            9999999999999987543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=6.4e-33  Score=194.34  Aligned_cols=165  Identities=35%  Similarity=0.644  Sum_probs=137.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      .+.++|+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   84 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   84 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence            4689999999999999999999999988777777776444 566678888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE  157 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (198)
                      +|||++++.++..+ ..|+..+....     ++.|+++|+||+|+.+..           +..+++..++......++++
T Consensus        85 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~  152 (177)
T 1wms_A           85 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFE  152 (177)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHTTCCCEEE
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccccc-----------cCHHHHHHHHHhcCCceEEE
Confidence            99999999999888 77777766543     578999999999997322           67788888888444347999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      +||++|.|++++|+++++.+...
T Consensus       153 ~Sa~~~~gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          153 TSAKDATNVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EeCCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999988754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.9e-33  Score=198.93  Aligned_cols=165  Identities=31%  Similarity=0.538  Sum_probs=143.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      .++.+||+++|.+|+|||||++++.++.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++++|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            34679999999999999999999999988777777765444 45566778889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+...          +..++++.++...++ +++++||
T Consensus       102 i~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  169 (193)
T 2oil_A          102 LLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQARE----------VPTEEARMFAENNGL-LFLETSA  169 (193)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999888 67877777654 5899999999999976543          677888889988888 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029144          161 KTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (198)
                      +++.|++++|.+|.+.+..
T Consensus       170 ~~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          170 LDSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-33  Score=196.32  Aligned_cols=164  Identities=26%  Similarity=0.497  Sum_probs=141.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.++|+++|.+|+|||||++++.++.+...+.++....+......++..+.+.+||+||++.+...+..+++++|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            57899999999999999999999998877777887766666677788888999999999999999988899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|++++.+++.. ..|...+....   ++.|+++|+||+|+.+...          +..+++..++...+. +++++||+
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~Sa~  149 (172)
T 2erx_A           82 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK  149 (172)
T ss_dssp             EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEccccccccc----------cCHHHHHHHHHHhCC-eEEEecCC
Confidence            999999999887 66666555532   5899999999999976543          667778888888887 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029144          162 TQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (198)
                      +|.|++++|++|.+.+..+
T Consensus       150 ~~~gi~~l~~~l~~~~~~~  168 (172)
T 2erx_A          150 LNHNVKELFQELLNLEKRR  168 (172)
T ss_dssp             TTBSHHHHHHHHHHTCCSS
T ss_pred             CCcCHHHHHHHHHHHHhhh
Confidence            9999999999999877543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=7.5e-34  Score=203.27  Aligned_cols=165  Identities=31%  Similarity=0.570  Sum_probs=134.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      .++.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            35679999999999999999999999888777777765443 55667788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++...+. +++++||
T Consensus       102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~SA  169 (200)
T 2o52_A          102 LLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPERE----------VTFLEASRFAQENEL-MFLETSA  169 (200)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEECT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCC-EEEEEeC
Confidence            999999999999988 67877776654 6899999999999976543          677888889988887 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029144          161 KTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++|.|++++|.+|++.+..
T Consensus       170 ~~g~gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          170 LTGENVEEAFLKCARTILN  188 (200)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=2.6e-33  Score=194.91  Aligned_cols=162  Identities=25%  Similarity=0.408  Sum_probs=127.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc-ccceeEEEEECCeEEEEEEEeCCCccCccc-ccccccCCCcEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFLL   83 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~~~~i~   83 (198)
                      .+||+++|.+|+|||||++++.+......+.++. .+.....+.+++..+.+.+||+||++.+.. .+..+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            5899999999999999999998765544433333 445566677889899999999999998876 77777899999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCC--CCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAP--GVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||+++++++..+ ..|+..+....+  +.|+++|+||+|+.+...          +..+++..++...++ +++++||+
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  149 (169)
T 3q85_A           82 VFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETSAA  149 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             EEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhccc----------CCHHHHHHHHHHcCC-cEEEecCc
Confidence            9999999999998 677777766653  899999999999986554          788899999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      ++.|++++|+++++.+..
T Consensus       150 ~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          150 LHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             TTBSHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHh
Confidence            999999999999998754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=3.3e-33  Score=199.97  Aligned_cols=165  Identities=27%  Similarity=0.501  Sum_probs=139.9

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeE--------------------------
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGST--------------------------   53 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~--------------------------   53 (198)
                      |+.+..+||+++|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..                          
T Consensus         2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (208)
T 3clv_A            2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN   81 (208)
T ss_dssp             CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence            7888899999999999999999999999988877777775444 3334444433                          


Q ss_pred             -----------EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           54 -----------VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        54 -----------~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                                 +.+.+||+||++.+...+..+++.+|++++|+|++++.++..+ ..|+..+....+ .|+++|+||+| 
T Consensus        82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~~-~piilv~NK~D-  158 (208)
T 3clv_A           82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISSN-YIIILVANKID-  158 (208)
T ss_dssp             ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHSC-CEEEEEEECTT-
T ss_pred             ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhCC-CcEEEEEECCC-
Confidence                       7899999999999999999999999999999999999999988 788877776544 99999999999 


Q ss_pred             ccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      .....          +..+++..++...+. +++++||+++.|++++|.+|.+.+.+
T Consensus       159 ~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          159 KNKFQ----------VDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             CC-CC----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccc----------CCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            33322          677888999999988 89999999999999999999988753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=6.7e-33  Score=198.58  Aligned_cols=165  Identities=29%  Similarity=0.623  Sum_probs=144.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      .+..+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   84 (203)
T 1zbd_A            5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF   84 (203)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence            34679999999999999999999999988777777775444 45566788889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++..+++ +++++||
T Consensus        85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  152 (203)
T 1zbd_A           85 ILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASA  152 (203)
T ss_dssp             EEEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCC----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCcccc----------cCHHHHHHHHHHCCC-eEEEEEC
Confidence            999999999999988 77888887765 5899999999999976543          677888899999998 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029144          161 KTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++|.|++++|++|.+.+..
T Consensus       153 ~~~~gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          153 KDNINVKQTFERLVDVICE  171 (203)
T ss_dssp             TTTBSSHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999988754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=7e-33  Score=196.47  Aligned_cols=162  Identities=35%  Similarity=0.575  Sum_probs=134.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.++|+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v   99 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   99 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence            57899999999999999999999998888888888777777788888889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ||++++.++..+ ..|+..+....  .+.|+++|+||+|+.+..           +..+++++++...+. +++++||++
T Consensus       100 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~  166 (190)
T 3con_A          100 FAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTRT-----------VDTKQAHELAKSYGI-PFIETSAKT  166 (190)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             EECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCccc-----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence            999999999988 78877777654  489999999999997632           567888899999988 799999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      +.|++++|++|.+.+..
T Consensus       167 ~~gi~~l~~~l~~~~~~  183 (190)
T 3con_A          167 RQGVEDAFYTLVREIRQ  183 (190)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=2.8e-33  Score=194.78  Aligned_cols=163  Identities=31%  Similarity=0.637  Sum_probs=136.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            578999999999999999999999988777777776444 4556667778899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |+|++++.++..+ ..|+..+.... ++.|+++|+||+|+.+..           +..+++..++...+. +++++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (170)
T 1g16_A           82 VYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAKN  148 (170)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------SCHHHHHHHHHHHTC-CEEECBTTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCcCc-----------cCHHHHHHHHHHcCC-eEEEEECCC
Confidence            9999999999888 78887777765 589999999999994322           567788889998988 799999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029144          163 QQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (198)
                      |.|++++|.++.+.+.+.
T Consensus       149 ~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          149 DDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             TBSHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999988643

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=3.5e-33  Score=195.84  Aligned_cols=163  Identities=34%  Similarity=0.571  Sum_probs=141.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      +.++|+++|.+|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            569999999999999999999999888777777775 4445667788888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |+|++++.++... ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++...+. +++++||++
T Consensus        93 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~  160 (179)
T 2y8e_A           93 VYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETSAKA  160 (179)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCc----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence            9999999999888 67777666544 5899999999999976543          677888888888887 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      +.|++++|++|.+.+..
T Consensus       161 ~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          161 GYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             TBSHHHHHHHHHHTCC-
T ss_pred             CCCHHHHHHHHHHHHhh
Confidence            99999999999987654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.9e-33  Score=199.98  Aligned_cols=171  Identities=32%  Similarity=0.520  Sum_probs=135.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      ..+.+||+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            45679999999999999999999999988777777775444 46677888889999999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+...    ....+.+..+++..++...+. +++++||
T Consensus       105 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~v~~~~~~~~~~~~~~-~~~~~SA  178 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAA----TEGQKCVPGHFGEKLAMTYGA-LFCETSA  178 (199)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHH----HTTCCCCCHHHHHHHHHHHTC-EEEECCT
T ss_pred             EEEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccc----cccccccCHHHHHHHHHHcCC-eEEEeeC
Confidence            999999999999988 67888887765 5899999999999974211    011223677888899999988 8999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029144          161 KTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++|.|++++|.+|++.+.+
T Consensus       179 ~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          179 KDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             TTCTTHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            9999999999999998754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=2.4e-33  Score=199.92  Aligned_cols=166  Identities=25%  Similarity=0.412  Sum_probs=137.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCc-cccceeEEEEECCeEEEEEEEeCCCccCccc-ccccccCCCcEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVF   81 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~~~~   81 (198)
                      ...+||+++|.+|+|||||+++|.+......+.++ ..+.+...+.+++..+.+.+||++|++.+.. ++..+++++|++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            46799999999999999999999754332222233 3445566677889899999999999988765 677788899999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS  159 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (198)
                      ++|||++++.++..+ ..|+..+....  .+.|+++|+||+|+.+...          +..++++.++...+. +|+++|
T Consensus       101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~S  168 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSRE----------VSLEEGRHLAGTLSC-KHIETS  168 (195)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-EEEEEB
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCC----------cCHHHHHHHHHHhCC-EEEEEc
Confidence            999999999999998 67877777654  4899999999999976543          778888999998887 899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCC
Q 029144          160 SKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      |+++.|++++|.++++.+....
T Consensus       169 a~~~~~v~~lf~~l~~~i~~~~  190 (195)
T 3cbq_A          169 AALHHNTRELFEGAVRQIRLRR  190 (195)
T ss_dssp             TTTTBSHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999886543

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=3.4e-33  Score=196.39  Aligned_cols=167  Identities=30%  Similarity=0.570  Sum_probs=125.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEEC-CeEEEEEEEeCCCccCcccccccccCCCcE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVD-GSTVNLGLWDTAGQEDYNRLRPLSYRGADV   80 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~   80 (198)
                      ..+.++|+++|.+|+|||||++++.++.+...+.++.+.. ....+.++ +..+.+.+||+||++.+...+..+++++|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            3468999999999999999999999998877777777543 34555555 556788999999999999999999999999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY  155 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (198)
                      +++|||++++.++..+ ..|+..+....     ++.|+++|+||+|+.+...         .+..+++..++......++
T Consensus        85 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~  154 (182)
T 1ky3_A           85 CVLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPL  154 (182)
T ss_dssp             EEEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCE
T ss_pred             EEEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCccccccc---------cCCHHHHHHHHHhcCCCeE
Confidence            9999999999999888 77777666543     5899999999999964321         2567788888875444479


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcC
Q 029144          156 IECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +++||++|.|++++|+++.+.+.+
T Consensus       155 ~~~Sa~~~~gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          155 FLTSAKNAINVDTAFEEIARSALQ  178 (182)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=3.2e-33  Score=198.50  Aligned_cols=164  Identities=32%  Similarity=0.571  Sum_probs=141.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee--EEEEECCe---------EEEEEEEeCCCccCcccccc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS--ANVVVDGS---------TVNLGLWDTAGQEDYNRLRP   72 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~l~i~D~~G~~~~~~~~~   72 (198)
                      ++.+||+++|.+|+|||||++++.++.+...+.+|.+..+.  ....+++.         .+.+.+||+||++.+...+.
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~   88 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT   88 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence            35799999999999999999999999887777777765543  34445544         78899999999999999999


Q ss_pred             cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144           73 LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI  150 (198)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (198)
                      .+++++|++++|+|++++.++..+ ..|+..+....  ++.|+++|+||+|+.+...          +..+++..++...
T Consensus        89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~  157 (195)
T 3bc1_A           89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRA----------VKEEEARELAEKY  157 (195)
T ss_dssp             HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHc
Confidence            999999999999999999999988 68888777665  5899999999999976543          6778888999988


Q ss_pred             CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          151 GAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +. +++++||+++.|++++|.+|.+.+.+
T Consensus       158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          158 GI-PYFETSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             TC-CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CC-CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            88 79999999999999999999998854

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=4.1e-34  Score=205.32  Aligned_cols=168  Identities=25%  Similarity=0.360  Sum_probs=109.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCccc-cceeEEEEECCe--EEEEEEEeCCCccCcccccccccC
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVF-DNFSANVVVDGS--TVNLGLWDTAGQEDYNRLRPLSYR   76 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~l~i~D~~G~~~~~~~~~~~~~   76 (198)
                      ...+.++|+++|.+|+|||||++++.++  .+...+.+|.+ +.....+.+++.  .+.+.+||+||++.+...+..+++
T Consensus        16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   95 (208)
T 2yc2_C           16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN   95 (208)
T ss_dssp             SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence            3456789999999999999999999998  77777778876 455666777776  789999999999999999999999


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC----CCCEEEEeecCCccc-ccccccCCCCCccccHHHHHHHHHHcC
Q 029144           77 GADVFLLAFSLISKASYENVAKKWIPELRHYAP----GVPIILVGTKLDLRD-DKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      ++|++++|||++++.++..+ ..|+..+....+    +.|+++|+||+|+.+ ...          +..+++..++...+
T Consensus        96 ~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~  164 (208)
T 2yc2_C           96 GVYYAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNT  164 (208)
T ss_dssp             CCCEEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTT
T ss_pred             hCcEEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcC
Confidence            99999999999999999998 688888887654    899999999999976 443          77888999999999


Q ss_pred             CCEEEEeccCC-CCCHHHHHHHHHHHHcCCC
Q 029144          152 APVYIECSSKT-QQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       152 ~~~~~~~Sa~~-~~~i~~~~~~i~~~~~~~~  181 (198)
                      . +++++||++ +.|++++|++|.+.+....
T Consensus       165 ~-~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          165 L-DFFDVSANPPGKDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             C-EEEECCC-------CHHHHHHHHHHHHHH
T ss_pred             C-EEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence            7 899999999 9999999999999886543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=1.2e-32  Score=190.51  Aligned_cols=162  Identities=34%  Similarity=0.574  Sum_probs=143.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.++|+++|.+|+|||||++++..+.+...+.++....+......++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            35899999999999999999999998888888888777777778888889999999999999999998899999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      +|++++.++..+ ..|+..+....  .+.|+++|+||+|+.+..           ...+++..++...+. +++++||++
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~  148 (166)
T 2ce2_X           82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART-----------VESRQAQDLARSYGI-PYIETSAKT  148 (166)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEEECTTT
T ss_pred             EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----------cCHHHHHHHHHHcCC-eEEEecCCC
Confidence            999999999988 77877777654  389999999999997632           567788889988888 799999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      +.|++++|+++.+.+.+
T Consensus       149 ~~gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          149 RQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.7e-32  Score=195.01  Aligned_cols=165  Identities=29%  Similarity=0.627  Sum_probs=143.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      +.++|+++|.+|+|||||++++..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            578999999999999999999999988877777775444 5566778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |+|++++.++..+ ..|+..+....  .+.|+++|+||+|+.+..           +..+++..++...+. +++++||+
T Consensus        94 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~  160 (195)
T 1x3s_A           94 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASAK  160 (195)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCcccc-----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence            9999999999988 68888887754  589999999999995432           667788889998887 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCc
Q 029144          162 TQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      ++.|++++|++|.+.+.....
T Consensus       161 ~~~gi~~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          161 TCDGVQCAFEELVEKIIQTPG  181 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHTSGG
T ss_pred             CCCCHHHHHHHHHHHHHhhhh
Confidence            999999999999999876543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-33  Score=199.18  Aligned_cols=164  Identities=30%  Similarity=0.538  Sum_probs=135.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-ceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +..+||+++|.+|+|||||++++.++.+...+.++.+. .....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            45789999999999999999999998887777777753 34556677888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...          +..++++.++......+++++||+
T Consensus       104 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~~~~~~~SA~  172 (192)
T 2il1_A          104 LVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAK  172 (192)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHTSTTCEEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCCeEEEEeCC
Confidence            99999999999988 78888887765 5899999999999976543          677788888887533489999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 029144          162 TQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~  178 (198)
                      +|.|++++|++|.+.+.
T Consensus       173 ~g~gi~~l~~~l~~~i~  189 (192)
T 2il1_A          173 DNFNVDEIFLKLVDDIL  189 (192)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999998875

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=6.3e-33  Score=199.13  Aligned_cols=164  Identities=29%  Similarity=0.552  Sum_probs=138.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      .+.++|+++|.+|+|||||++++.+..+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV   85 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence            468999999999999999999999998877777777533 4555667777889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-HcCCCEEE
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-LIGAPVYI  156 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  156 (198)
                      +|||++++.++..+ ..|+..+....     ++.|+++|+||+|+.+..           +..+++..++. ..+. +++
T Consensus        86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~  152 (207)
T 1vg8_A           86 LVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNI-PYF  152 (207)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTSC-CEE
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-----------cCHHHHHHHHHhcCCc-eEE
Confidence            99999999999888 77777665543     478999999999997422           56677888877 4455 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ++||++|.|++++|++|.+.+...
T Consensus       153 ~~Sa~~g~gi~~l~~~l~~~~~~~  176 (207)
T 1vg8_A          153 ETSAKEAINVEQAFQTIARNALKQ  176 (207)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999988653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=1e-32  Score=195.52  Aligned_cols=163  Identities=29%  Similarity=0.529  Sum_probs=138.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcc-cccccccCCCcEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVF   81 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~~~~   81 (198)
                      .+.+||+++|.+|+|||||++++..+.+...+.++.+.. ....+.+++..+.+.+||+||++.+. ..+..+++++|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            467999999999999999999999998887777777544 35566778888999999999999988 8888899999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS  159 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (198)
                      ++|||++++.++..+ ..|+..+....  .+.|+++|+||+|+.+...          +..++++.++...+. +++++|
T Consensus        98 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~S  165 (189)
T 1z06_A           98 VFVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETS  165 (189)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECC
T ss_pred             EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccce----------eCHHHHHHHHHHcCC-EEEEEe
Confidence            999999999999988 67877777664  6899999999999976543          677888899999988 799999


Q ss_pred             cCCC---CCHHHHHHHHHHHHc
Q 029144          160 SKTQ---QNVKAVFDAAIKVVL  178 (198)
Q Consensus       160 a~~~---~~i~~~~~~i~~~~~  178 (198)
                      |+++   .|++++|.+|++.+.
T Consensus       166 a~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          166 AKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             SSSGGGGSCHHHHHHHHC----
T ss_pred             CCcCCcccCHHHHHHHHHHHHh
Confidence            9999   999999999988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=4.1e-34  Score=203.14  Aligned_cols=165  Identities=30%  Similarity=0.611  Sum_probs=144.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +..+||+++|.+|+|||||++++.++.+...+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            4678999999999999999999999888777777775444 455566777788999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+...          +..+++..++...++ +++++||+
T Consensus       101 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~  168 (191)
T 3dz8_A          101 LMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERV----------VPTEKGQLLAEQLGF-DFFEASAK  168 (191)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999988 77888888766 6899999999999976654          778888999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029144          162 TQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (198)
                      +|.|++++|+++++.+...
T Consensus       169 ~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          169 ENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             TTBSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999999987543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=3.1e-32  Score=193.69  Aligned_cols=165  Identities=24%  Similarity=0.439  Sum_probs=131.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh--CCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccC-cccccccccCCCcE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED-YNRLRPLSYRGADV   80 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~~~   80 (198)
                      ...+||+++|.+|+|||||+++|.+  ..+...+.++..+.+...+.+++..+.+.+||++|++. +..++..+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            4578999999999999999999985  33445444444455566778899889999999999876 55667778888999


Q ss_pred             EEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144           81 FLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIEC  158 (198)
Q Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (198)
                      +++|||++++.++... ..|...+....  ++.|+++|+||+|+.+.+.          +..+++..++...++ +|+++
T Consensus        84 ~i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~  151 (192)
T 2cjw_A           84 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXRE----------VSVSEGRAXAVVFDX-KFIET  151 (192)
T ss_dssp             EEEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEEC
T ss_pred             EEEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhcccc----------ccHHHHHHHHHHhCC-ceEEe
Confidence            9999999999999988 67776666542  5899999999999976443          667777888888887 79999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcCC
Q 029144          159 SSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ||++|.|++++|.++++.+...
T Consensus       152 SA~~g~~v~~lf~~l~~~~~~~  173 (192)
T 2cjw_A          152 SAAVQHNVKELFEGIVRQVRLR  173 (192)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHhh
Confidence            9999999999999999988543

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=1.8e-33  Score=203.55  Aligned_cols=166  Identities=37%  Similarity=0.617  Sum_probs=140.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCe----------EEEEEEEeCCCccCccccc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGS----------TVNLGLWDTAGQEDYNRLR   71 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~l~i~D~~G~~~~~~~~   71 (198)
                      .++.+||+++|.+|+|||||+++|..+.+...+.+|.+..+ ...+.+++.          .+.+.+||+||++.|...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            35679999999999999999999999888766666665433 344555554          6889999999999999999


Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL  149 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (198)
                      ..+++++|++++|||++++.++..+ ..|+..+....  .+.|+++|+||+|+.+...          +..+++..++..
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v~~~~~~~~~~~  170 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADK  170 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHH
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCccccccc----------cCHHHHHHHHHH
Confidence            9999999999999999999999988 67887776654  5899999999999976543          677888999999


Q ss_pred             cCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          150 IGAPVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      .+. +++++||+++.|++++|++|.+.+...
T Consensus       171 ~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          171 YGI-PYFETSAATGQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             TTC-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCC-cEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            988 799999999999999999999988653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=1.2e-31  Score=193.28  Aligned_cols=163  Identities=32%  Similarity=0.639  Sum_probs=139.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            3578999999999999999999999988777777775444 456677888889999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+..           +..+++..++..+++ +++++||+
T Consensus        98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~  164 (213)
T 3cph_A           98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAK  164 (213)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCSSCC-----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccc-----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence            99999999999888 68887777765 479999999999994322           567788888888888 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      ++.|++++|.+|.+.+..
T Consensus       165 ~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          165 NDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             TTBSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=4.7e-33  Score=198.19  Aligned_cols=165  Identities=24%  Similarity=0.274  Sum_probs=131.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCC-----------Cccccce-eEEE-EECCeEEEEEEEeCCCccCccc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-----------PTVFDNF-SANV-VVDGSTVNLGLWDTAGQEDYNR   69 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~-----------~t~~~~~-~~~~-~~~~~~~~l~i~D~~G~~~~~~   69 (198)
                      .++.+||+++|.+|+|||||++.+. +.+...+.           +|.+..+ ...+ .+++..+.+.+||+||++.|..
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            3468999999999999999996554 44444432           2332222 1222 4566778999999999999999


Q ss_pred             ccccccCCCcEEEEEEECC------ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHH
Q 029144           70 LRPLSYRGADVFLLAFSLI------SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG  143 (198)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  143 (198)
                      .+..+++++|++++|||++      +.+++..+ ..|+..+....++.|+++|+||+|+.+.            +..+++
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~  156 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEMV  156 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHHH
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHHH
Confidence            9999999999999999999      55667666 6677777555579999999999999663            677888


Q ss_pred             HHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          144 EELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       144 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      .+++...++.+++++||++|.|++++|.+|++.+....
T Consensus       157 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~  194 (198)
T 3t1o_A          157 RAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARV  194 (198)
T ss_dssp             HHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence            99999888756999999999999999999999886543

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=100.00  E-value=2e-31  Score=204.22  Aligned_cols=176  Identities=64%  Similarity=1.076  Sum_probs=151.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      ..++|+++|.+|+|||||++++..+.+...+.+|++..+...+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v  233 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC  233 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence            46899999999999999999999999988888998888887888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ||++++.++..+...|+..+....++.|+++|+||+|+.+.....  ......+.+..+++..++...+..+++++||++
T Consensus       234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  313 (332)
T 2wkq_A          234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  313 (332)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            999999999998557888888877899999999999997542100  001112347788899999999876899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029144          163 QQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (198)
                      |.|++++|+.+.+.+..+
T Consensus       314 ~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          314 QRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             CTTHHHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHhcC
Confidence            999999999999988654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=6e-32  Score=192.82  Aligned_cols=166  Identities=16%  Similarity=0.158  Sum_probs=124.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ....||+++|.+|+|||||+++|.++.+.. .+.+|.+.... .+...  .+.+.+||+||++.+...+..+++++|++|
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   91 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE-TFEKG--RVAFTVFDMGGAKKFRGLWETYYDNIDAVI   91 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE-EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE-EEEeC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence            468899999999999999999999998877 77787763332 23333  477889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC---------CCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-HHHHcCC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA---------PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-LRKLIGA  152 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  152 (198)
                      +|||++++.++... ..|+..+....         ++.|+++|+||+|+.+...       ...+....... ++...++
T Consensus        92 ~v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~~~~~~~~~~~~~~~~~  163 (199)
T 4bas_A           92 FVVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT-------AAELVEILDLTTLMGDHPF  163 (199)
T ss_dssp             EEEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC-------HHHHHHHHTHHHHHTTSCE
T ss_pred             EEEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC-------HHHHHHHhcchhhccCCee
Confidence            99999999999998 45555443321         2899999999999976521       00011111111 1134555


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          153 PVYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                       +++++||++|.|++++|++|++.+....
T Consensus       164 -~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          164 -VIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             -EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             -EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence             7999999999999999999999886543

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.98  E-value=3.8e-32  Score=196.74  Aligned_cols=168  Identities=27%  Similarity=0.419  Sum_probs=138.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEE-E-CCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-V-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~-~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      ...+||+++|.+|+|||||++++.++.+...+.++.+........ . ++..+.+.+||+||++.+...+..+++++|++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA   88 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence            367999999999999999999999888777666666544433322 2 34448899999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ++|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+...          +..+++..++...+. +++++||
T Consensus        89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa  156 (218)
T 4djt_A           89 ILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQK----------ISKKLVMEVLKGKNY-EYFEISA  156 (218)
T ss_dssp             EEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC--------------CCHHHHHHHTTTCCC-EEEEEBT
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCccccc----------cCHHHHHHHHHHcCC-cEEEEec
Confidence            999999999999988 68888777665 4699999999999976543          777888888888887 7999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCcc
Q 029144          161 KTQQNVKAVFDAAIKVVLQPPKN  183 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~~~  183 (198)
                      ++|.|++++|.+|.+.+......
T Consensus       157 ~~g~gv~~l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          157 KTAHNFGLPFLHLARIFTGRPDL  179 (218)
T ss_dssp             TTTBTTTHHHHHHHHHHHCCTTC
T ss_pred             CCCCCHHHHHHHHHHHHhccccc
Confidence            99999999999999998765443

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.96  E-value=1.2e-34  Score=207.95  Aligned_cols=174  Identities=66%  Similarity=1.087  Sum_probs=145.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.+|+|||||++++..+.+...+.++....+...+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLI  107 (204)
Confidence            57899999999999999999999999888888888877777777777888889999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc--CCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA--DHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++......|+..+....++.|+++|+||+|+.+......  .....+.+..+++..++...+..+++++||+
T Consensus       108 v~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~  187 (204)
T 3th5_A          108 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  187 (204)
Confidence            99999999999885588888887767899999999999976431100  0011123566777788888886579999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q 029144          162 TQQNVKAVFDAAIKVV  177 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~  177 (198)
                      +|.|++++|++|++.+
T Consensus       188 ~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          188 TQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999998765

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.98  E-value=1.4e-33  Score=201.73  Aligned_cols=165  Identities=30%  Similarity=0.611  Sum_probs=132.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ++.+||+++|.+|+|||||++++..+.+...+.++.+.. ....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            457999999999999999999999888776666666433 3566678888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+...          +..+++..++...+. +++++||+
T Consensus       111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~vSA~  178 (199)
T 3l0i_B          111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKV----------VDYTTAKEFADSLGI-PFLETSAK  178 (199)
T ss_dssp             ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CC----------CCSCC-CHHHHTTTC-CBCCCCC-
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCcccc----------CCHHHHHHHHHHcCC-eEEEEECC
Confidence            99999999999998 77888887765 5899999999999976543          555567788888887 69999999


Q ss_pred             CCCCHHHHHHHHHHHHcCC
Q 029144          162 TQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~  180 (198)
                      ++.|++++|.+|.+.+...
T Consensus       179 ~g~gv~~l~~~l~~~l~~~  197 (199)
T 3l0i_B          179 NATNVEQSFMTMAAEIKKR  197 (199)
T ss_dssp             --HHHHHHHHHHTTTTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHh
Confidence            9999999999998877543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.98  E-value=3e-32  Score=197.78  Aligned_cols=165  Identities=28%  Similarity=0.463  Sum_probs=140.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-ceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      .+.+||+++|.+|+|||||+++++.+.+...+.++.+. .......+++..+.+.+||+||++.+...+..+++++|+++
T Consensus        13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   92 (221)
T 3gj0_A           13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI   92 (221)
T ss_dssp             CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence            46799999999999999999998877766666677653 34555667888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      +|||++++.++..+ ..|+..+....++.|+++|+||+|+.+...           . .+...++...+. +|+++||++
T Consensus        93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----------~-~~~~~~~~~~~~-~~~~~Sa~~  158 (221)
T 3gj0_A           93 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV-----------K-AKSIVFHRKKNL-QYYDISAKS  158 (221)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS-----------C-GGGCCHHHHHTC-EEEECBGGG
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc-----------c-HHHHHHHHHcCC-EEEEEeCCC
Confidence            99999999999998 789888888888999999999999976431           1 244556777787 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCCCc
Q 029144          163 QQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~~~  182 (198)
                      |.|++++|.+|.+.+.....
T Consensus       159 ~~gi~~l~~~l~~~l~~~~~  178 (221)
T 3gj0_A          159 NYNFEKPFLWLARKLIGDPN  178 (221)
T ss_dssp             TBTTTHHHHHHHHHHHTCTT
T ss_pred             CCCHHHHHHHHHHHHHhCcc
Confidence            99999999999999876543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=1.4e-30  Score=181.38  Aligned_cols=160  Identities=13%  Similarity=0.178  Sum_probs=123.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.++|+++|.+|+|||||++++..+.+.. +.+|.+. ....+.+++  +.+.+||+||++.+...+..+++++|++++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF-NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE-EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc-ceEEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            457999999999999999999999988754 4555542 234455554  677899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-----HHHHcCCCEEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-----LRKLIGAPVYIE  157 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~  157 (198)
                      |+|++++.++......+...+.... ++.|+++|+||+|+.+..            ..++...     .+...++ ++++
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~  147 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM------------TSSEMANSLGLPALKDRKW-QIFK  147 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTGGGCTTSCE-EEEE
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC------------CHHHHHHHhCchhccCCce-EEEE
Confidence            9999999999888444444444322 589999999999997642            1122221     1223454 7999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      +||++|.|++++|+++.+.+.+.
T Consensus       148 ~Sa~~~~gi~~l~~~l~~~i~~~  170 (171)
T 1upt_A          148 TSATKGTGLDEAMEWLVETLKSR  170 (171)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             CcCCCCcCHHHHHHHHHHHHhhc
Confidence            99999999999999999988653

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=9.6e-31  Score=186.86  Aligned_cols=157  Identities=19%  Similarity=0.250  Sum_probs=119.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.++|+++|++|+|||||++++.++.+. .+.+|.+.. ...+.+++  +.+.+||+||++.+...+..+++++|++++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   98 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   98 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999988764 455665543 34566676  778899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-----------
Q 029144           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-----------  150 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (198)
                      |+|+++++++... ..|+..+...  ..+.|+++|+||+|+.+.            ++.+++.++....           
T Consensus        99 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  165 (198)
T 1f6b_A           99 LVDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSL  165 (198)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCT
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCccccccccccccc
Confidence            9999999999988 5565555432  258999999999999652            5666666665432           


Q ss_pred             -----CCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          151 -----GAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       151 -----~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                           ...+++++||++|.|++++|+++.+.+
T Consensus       166 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          166 KELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             TTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence                 223799999999999999999998653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=2.8e-30  Score=182.46  Aligned_cols=159  Identities=16%  Similarity=0.232  Sum_probs=124.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.++|+++|.+|+|||||++++.++. ...+.+|.+.. ...+.+++  +.+.+||+||++.+...+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            568999999999999999999999888 66667776533 33445555  677899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-----HcCCCEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-----LIGAPVYI  156 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  156 (198)
                      |+|++++.++... ..|+..+...  .++.|+++|+||+|+.+..            ..++..+...     ..+. +++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~  157 (186)
T 1ksh_A           92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHHW-RIQ  157 (186)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCce-EEE
Confidence            9999999999988 4555444432  2589999999999997642            2233332221     2344 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ++||++|.|++++|+++.+.+.+.
T Consensus       158 ~~Sa~~~~gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          158 GCSAVTGEDLLPGIDWLLDDISSR  181 (186)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EeeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999987553

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=3.1e-30  Score=183.08  Aligned_cols=156  Identities=15%  Similarity=0.249  Sum_probs=123.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.++|+++|.+|+|||||++++.++.+. .+.+|.+.. ...+.+++  +.+.+||+||++.+...+..+++++|++++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            35689999999999999999999998864 455665543 45566676  778899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-----------
Q 029144           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-----------  150 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  150 (198)
                      |+|++++.++... ..|+..+...  .++.|+++|+||+|+.+.            ++.+++.+.....           
T Consensus        97 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  163 (190)
T 1m2o_B           97 LVDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQ  163 (190)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSS
T ss_pred             EEECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCcccccccccccc
Confidence            9999999999998 5665555432  258999999999999752            4555555544321           


Q ss_pred             CCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          151 GAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      ...+++++||++|.|++++|+++.+.
T Consensus       164 ~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          164 RPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            22379999999999999999999764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.9e-30  Score=183.51  Aligned_cols=163  Identities=15%  Similarity=0.210  Sum_probs=122.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.++|+++|.+|+|||||++++.++.+. .+.+|.+. ....+.+++  +.+.+||+||++++...+..+++++|++++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGS-NVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCS-SCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCcc-ceEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            46799999999999999999999988776 55566552 234455665  778899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH-----HcCCCEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK-----LIGAPVYI  156 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  156 (198)
                      |+|+++++++... ..|+..+...  ..+.|+++|+||+|+.+.            ...++..+...     ..+. +++
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~  155 (187)
T 1zj6_A           90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQW-HIQ  155 (187)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-EEE
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCC------------CCHHHHHHHhChhhhcCCCc-EEE
Confidence            9999999999998 5666655543  258999999999999753            23344433322     2344 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCCcch
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQPPKNK  184 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  184 (198)
                      ++||++|.|++++|++|++.+.......
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~~  183 (187)
T 1zj6_A          156 ACCALTGEGLCQGLEWMMSRLKIRLEHH  183 (187)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHCC-----
T ss_pred             EccCCCCcCHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999987665443

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=1.8e-30  Score=184.07  Aligned_cols=159  Identities=16%  Similarity=0.221  Sum_probs=124.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCC-CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      .+.++|+++|.+|+|||||++++.++. +...+.+|.+ .....+.+++  +.+.+||+||++.+...+..+++++|+++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII   95 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            467999999999999999999999887 4556666665 3344455555  67789999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH--H---cCCC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK--L---IGAP  153 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~  153 (198)
                      +|+|++++.++... ..|+..+....    .+.|+++|+||+|+.+.            ...++..+...  .   .+. 
T Consensus        96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~-  161 (190)
T 2h57_A           96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDA------------VTSVKVSQLLCLENIKDKPW-  161 (190)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC------------CCHHHHHHHHTGGGCCSSCE-
T ss_pred             EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccC------------CCHHHHHHHhChhhccCCce-
Confidence            99999999999988 45555544332    48999999999999753            34455555443  1   244 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +++++||++|.|++++|++|.+.+..
T Consensus       162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          162 HICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            79999999999999999999987743

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.97  E-value=3e-31  Score=183.60  Aligned_cols=155  Identities=14%  Similarity=0.191  Sum_probs=118.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|.+|+|||||++++..+.+.. +.||.+. ....+..++  +.+.+||+||++.+...+..+++++|++++|+|
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   76 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF-NVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC-CEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce-eEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence            589999999999999999999887754 4566552 223333444  678899999999999999899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-H----HHHcCCCEEEEec
Q 029144           87 LISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-L----RKLIGAPVYIECS  159 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~S  159 (198)
                      ++++.++... ..|+..+...  .++.|+++|+||+|+.+..            ..++... +    +...+. +++++|
T Consensus        77 ~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~S  142 (164)
T 1r8s_A           77 SNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNW-YIQATC  142 (164)
T ss_dssp             TTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EEEECB
T ss_pred             CCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCccE-EEEEcc
Confidence            9999999988 5555554432  2689999999999996532            1222221 1    112333 699999


Q ss_pred             cCCCCCHHHHHHHHHHHHcC
Q 029144          160 SKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~  179 (198)
                      |++|.|++++|+++.+.+..
T Consensus       143 a~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          143 ATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             TTTTBTHHHHHHHHHHHC--
T ss_pred             cCCCcCHHHHHHHHHHHHhh
Confidence            99999999999999988753

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=2.8e-30  Score=182.88  Aligned_cols=160  Identities=21%  Similarity=0.278  Sum_probs=124.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.+|+|||||++++.++.+...+.+|.+..+.. +...+  +.+.+||+||++.+...+..+++++|++++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   96 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVY   96 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence            457999999999999999999999998877777777655432 33444  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH-H----HHcCCCEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL-R----KLIGAPVYI  156 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~  156 (198)
                      |+|++++.++... ..|+..+...  ..+.|+++|+||+|+.+..            ..++.... .    ...+. +++
T Consensus        97 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~  162 (188)
T 1zd9_A           97 MVDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGAL------------DEKELIEKMNLSAIQDREI-CCY  162 (188)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCC------------CHHHHHHHhChhhhccCCe-eEE
Confidence            9999999999988 4555444332  2589999999999997532            22222211 1    12233 689


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ++||++|.|++++|++|.+.+...
T Consensus       163 ~~SA~~g~gv~~l~~~l~~~~~~~  186 (188)
T 1zd9_A          163 SISCKEKDNIDITLQWLIQHSKSR  186 (188)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTCC--
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999977543

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=4.8e-31  Score=187.56  Aligned_cols=159  Identities=13%  Similarity=0.173  Sum_probs=117.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ..+.+||+++|.+|+|||||++++..+.+.. +.||.+ .....+..++  +.+.+||+||++.+...+..+++++|+++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4568999999999999999999999887653 345544 2233344454  77889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-HH----HHcCCCEE
Q 029144           83 LAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-LR----KLIGAPVY  155 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~  155 (198)
                      +|+|++++.++... ..|+..+...  .++.|+++|+||+|+.+..            ..++... +.    ...+. ++
T Consensus       102 lv~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~  167 (192)
T 2b6h_A          102 FVVDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAM------------PVSELTDKLGLQHLRSRTW-YV  167 (192)
T ss_dssp             EEEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EE
T ss_pred             EEEECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCce-EE
Confidence            99999999999988 5565555432  2589999999999996532            2222221 11    12233 68


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcC
Q 029144          156 IECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +++||++|.|++++|++|++.+.+
T Consensus       168 ~~~SA~~g~gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          168 QATCATQGTGLYDGLDWLSHELSK  191 (192)
T ss_dssp             EECBTTTTBTHHHHHHHHHHHTTT
T ss_pred             EECcCCCcCCHHHHHHHHHHHHhc
Confidence            999999999999999999988753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=2.6e-30  Score=182.02  Aligned_cols=155  Identities=17%  Similarity=0.252  Sum_probs=120.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.+|+|||||++++.++.+ ..+.+|.+... ..+.+++  +.+.+||+||++.+...+..+++++|++++
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   94 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   94 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            4679999999999999999999999877 44455555333 4455566  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-----HHcCCCEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-----KLIGAPVYI  156 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  156 (198)
                      |+|++++.++... ..|+..+...  ..+.|+++|+||+|+.+.            ...++..+..     ...++ +++
T Consensus        95 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~  160 (181)
T 2h17_A           95 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKEC------------MTVAEISQFLKLTSIKDHQW-HIQ  160 (181)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTC------------CCHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccC------------CCHHHHHHHhCcccccCCce-EEE
Confidence            9999999999988 4555444433  258999999999999653            2333333322     12333 799


Q ss_pred             EeccCCCCCHHHHHHHHHHH
Q 029144          157 ECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      ++||++|.|++++|++|.+.
T Consensus       161 ~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          161 ACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             ECBTTTTBTHHHHHHHHHTC
T ss_pred             EccCCCCcCHHHHHHHHHhh
Confidence            99999999999999999764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.97  E-value=1.4e-30  Score=184.56  Aligned_cols=158  Identities=20%  Similarity=0.206  Sum_probs=122.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.+|+|||||++++..+.+.. +.+|.+. ....+.+++  +.+.+||+||++.+...+..+++++|++++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   95 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV-NLETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY   95 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC-CEEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce-EEEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence            568999999999999999999998877653 4555542 233455555  677899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-H----HHHcCCCEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-L----RKLIGAPVYI  156 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~  156 (198)
                      |+|+++++++... ..|+..+...  .++.|+++|+||+|+.+..            ..++... +    +...+. +++
T Consensus        96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~  161 (189)
T 2x77_A           96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAA------------SEAEIAEQLGVSSIMNRTW-TIV  161 (189)
T ss_dssp             EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhccCCce-EEE
Confidence            9999999999988 4554444332  2589999999999997642            1122221 1    122344 799


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++||+++.|++++|+++.+.+..
T Consensus       162 ~~Sa~~~~gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          162 KSSSKTGDGLVEGMDWLVERLRE  184 (189)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EccCCCccCHHHHHHHHHHHHHh
Confidence            99999999999999999998754

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.97  E-value=1.5e-30  Score=185.49  Aligned_cols=166  Identities=14%  Similarity=0.202  Sum_probs=120.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce---eEEEEE-CCeEEEEEEEeCCCccCccccc---ccccC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF---SANVVV-DGSTVNLGLWDTAGQEDYNRLR---PLSYR   76 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~D~~G~~~~~~~~---~~~~~   76 (198)
                      ++.+||+++|.+|+|||||++++.+... ..  ++.+..+   .....+ ++..+.+.+||+||++.|....   ..+++
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   94 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR   94 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence            4689999999999999999997776432 22  2222111   122223 2556788999999999987766   78999


Q ss_pred             CCcEEEEEEECCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH----Hc
Q 029144           77 GADVFLLAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK----LI  150 (198)
Q Consensus        77 ~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  150 (198)
                      ++|++|+|||++++  +++... ..|+..+....++.|+++|+||+|+.+.....   ...+.+..++...++.    ..
T Consensus        95 ~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~  170 (196)
T 3llu_A           95 GTGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKI---ETQRDIHQRANDDLADAGLEKL  170 (196)
T ss_dssp             TCSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH---HHHHHHHHHHHHHHHHTTCTTS
T ss_pred             cCCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhh---HHHhHHHHHHHHHHHHhhhhcC
Confidence            99999999999997  666666 56666665556799999999999986532100   0011255566777777    56


Q ss_pred             CCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          151 GAPVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      +. +|+++||++ .|++++|..+++.++
T Consensus       171 ~~-~~~e~Sa~~-~~v~~~f~~l~~~li  196 (196)
T 3llu_A          171 HL-SFYLTSIYD-HSIFEAFSKVVQKLI  196 (196)
T ss_dssp             CE-EEEEECTTS-THHHHHHHHHHHHTC
T ss_pred             Cc-ceEEEEech-hhHHHHHHHHHHHhC
Confidence            66 799999999 999999999998763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=2.2e-30  Score=182.50  Aligned_cols=158  Identities=20%  Similarity=0.252  Sum_probs=120.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.++|+++|.+|+|||||++++.++.+ ..+.+|.+. ....+.+++  +.+.+||+||++.+...+..+++++|++++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~-~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF-NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE-EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe-EEEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            5689999999999999999999998754 334455542 233445554  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-----HHcCCCEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-----KLIGAPVYI  156 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  156 (198)
                      |+|++++.++... ..|+..+...  ..+.|+++|+||+|+.+..            ..++..+..     ...+. +++
T Consensus        90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~  155 (181)
T 1fzq_A           90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRDRVW-QIQ  155 (181)
T ss_dssp             EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred             EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC------------CHHHHHHHhCchhccCCce-EEE
Confidence            9999999999988 5555544332  2589999999999997642            222222211     12234 699


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++||++|.|++++|+++++.+..
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          156 SCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             ECCTTTCTTHHHHHHHHHHTC--
T ss_pred             EccCCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=1.2e-29  Score=178.63  Aligned_cols=157  Identities=15%  Similarity=0.207  Sum_probs=119.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.++|+++|++|+|||||++++..+.+ ..+.+|.+.. ...+.+++  ..+.+||+||++.+...+..+++++|++++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF   91 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            5789999999999999999999998776 4445555532 34455555  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH-----cCCCEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL-----IGAPVYI  156 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  156 (198)
                      |+|++++.++... ..|+..+...  ..+.|+++|+||+|+.+.            ...++..+....     .+. +++
T Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~~  157 (183)
T 1moz_A           92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRSW-SIV  157 (183)
T ss_dssp             EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSCE-EEE
T ss_pred             EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCC------------CCHHHHHHHhCcccccCCce-EEE
Confidence            9999999999988 5565555543  368999999999999653            233333332221     223 699


Q ss_pred             EeccCCCCCHHHHHHHHHHHHc
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      ++||++|.|++++|+++.+.+.
T Consensus       158 ~~Sa~~~~gi~~l~~~l~~~~~  179 (183)
T 1moz_A          158 ASSAIKGEGITEGLDWLIDVIK  179 (183)
T ss_dssp             EEBGGGTBTHHHHHHHHHHHHH
T ss_pred             EccCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999999874

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.97  E-value=1e-30  Score=184.63  Aligned_cols=165  Identities=24%  Similarity=0.350  Sum_probs=120.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC--CCCCCCCCcccccee-EEEEE---CCeEEEEEEEeCCCccCcccccccccCCCc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFS-ANVVV---DGSTVNLGLWDTAGQEDYNRLRPLSYRGAD   79 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~--~~~~~~~~t~~~~~~-~~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~   79 (198)
                      .+||+++|++|+|||||++++.+.  .+...+.+|.+..+. ..+.+   ++..+.+.+||++|++.|..++..++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999999985  455556666654432 22222   235678899999999999999999999999


Q ss_pred             EEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCcccc---HHHHHHHHHHcCCC--
Q 029144           80 VFLLAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPIT---TAQGEELRKLIGAP--  153 (198)
Q Consensus        80 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--  153 (198)
                      ++++|||++++ .++..+ ..|+..+....++.|+++|+||+|+.+...          +.   .+....++...+++  
T Consensus        82 ~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~  150 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQ----------RKACMSKITKELLNKRGFPAI  150 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHH----------HHHHHHHHHHHTTTCTTSCEE
T ss_pred             EEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchh----------hHHHHHHHHHHHHHhcCCcch
Confidence            99999999997 478777 788888877667899999999999976432          22   33445666666764  


Q ss_pred             -EEEEeccCCCC-CHHHHHHHHHHHHcCCC
Q 029144          154 -VYIECSSKTQQ-NVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       154 -~~~~~Sa~~~~-~i~~~~~~i~~~~~~~~  181 (198)
                       .++++||+++. ++++++..+.+.+....
T Consensus       151 ~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          151 RDYHFVNATEESDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             EEEEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred             hheEEEecccCchhHHHHHHHHHHHHhccc
Confidence             38999999997 99999999999886643

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.97  E-value=1.5e-28  Score=175.48  Aligned_cols=164  Identities=34%  Similarity=0.573  Sum_probs=138.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +..++|+++|++|+|||||++++.+..+...+.++.+.. ....+.+++..+.+.+||++|++.+...+..+++++++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            457999999999999999999999998877777776533 3556778898899999999999999988888899999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|+|+++..++... ..|+..+.... .+.|+++|+||+|+.+...          +..++++.++...+. .++++||+
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~~d~Sal  150 (199)
T 2f9l_A           83 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSAL  150 (199)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccC----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence            99999999998887 66777666543 5789999999999976543          566788889988887 79999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      ++.|++++|+.+.+.+..
T Consensus       151 ~~~~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          151 DSTNVEEAFKNILTEIYR  168 (199)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999988753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.96  E-value=6e-28  Score=171.40  Aligned_cols=161  Identities=35%  Similarity=0.600  Sum_probs=138.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..++|+++|++|+|||||++++.+..+...+.+|.+..+ ...+.+++..+.+.+||++|++++...+..++++++++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~  107 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL  107 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence            468999999999999999999999988777777776444 5667788888888999999999999998888999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |+|+.+..+++.+ ..|+..+.... .+.|+++++||+|+.+...          ...++++.++...+. .++++||++
T Consensus       108 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~----------~~~~~a~~l~~~~~~-~~ld~Sald  175 (191)
T 1oix_A          108 VYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNGL-SFIETSALD  175 (191)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999998877 66776666543 5789999999999976443          567788899998887 799999999


Q ss_pred             CCCHHHHHHHHHHHH
Q 029144          163 QQNVKAVFDAAIKVV  177 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~  177 (198)
                      +.+++++|+.+.+.+
T Consensus       176 ~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          176 STNVEAAFQTILTEI  190 (191)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998865

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.96  E-value=2.1e-29  Score=181.79  Aligned_cols=173  Identities=16%  Similarity=0.123  Sum_probs=115.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCe-EEEEEEEeCCCccCccc-ccccccCCCcE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGS-TVNLGLWDTAGQEDYNR-LRPLSYRGADV   80 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~-~~~~~~~~~~~   80 (198)
                      ..+.+||+++|.+|+|||||++++..+.+...+.++......  +.+++. .+.+.+||+||++.|.. ++..+++++|+
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            456899999999999999999999999888777655433322  555543 57888999999999987 78888999999


Q ss_pred             EEEEEECCChh-hHHHHHHHHHHHHhhh---CCCCCEEEEeecCCccccccccc------------CCCCC---------
Q 029144           81 FLLAFSLISKA-SYENVAKKWIPELRHY---APGVPIILVGTKLDLRDDKQFLA------------DHPGA---------  135 (198)
Q Consensus        81 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~~~~------------~~~~~---------  135 (198)
                      +++|||+++.. ++......|...+...   .++.|+++|+||+|+.+......            .....         
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999854 4555545566555442   24799999999999976431000            00000         


Q ss_pred             ---ccccHHHHHHHHHHcC--CCEEEEeccCCC------CCHHHHHHHHHHHH
Q 029144          136 ---VPITTAQGEELRKLIG--APVYIECSSKTQ------QNVKAVFDAAIKVV  177 (198)
Q Consensus       136 ---~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~------~~i~~~~~~i~~~~  177 (198)
                         +.+..++++.++....  ..+|++|||++|      .|++++|++|.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence               0000000111111110  337999999999      99999999998753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.96  E-value=1.7e-28  Score=171.86  Aligned_cols=159  Identities=18%  Similarity=0.215  Sum_probs=118.1

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      .++.++|+++|.+|+|||||++++.++.+...+.++.. +.....+.+++.  .+.+||+||++.|...+...+..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            34689999999999999999999999887766555543 333455666774  456999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-------C-CC
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-------G-AP  153 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~  153 (198)
                      ++|+|++++......  .++..+...  +.|+++|+||+|+.+..             .++........       + ..
T Consensus        83 i~v~d~~~~~~~~~~--~~l~~~~~~--~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~  145 (178)
T 2lkc_A           83 ILVVAADDGVMPQTV--EAINHAKAA--NVPIIVAINKMDKPEAN-------------PDRVMQELMEYNLVPEEWGGDT  145 (178)
T ss_dssp             EEEEETTCCCCHHHH--HHHHHHGGG--SCCEEEEEETTTSSCSC-------------HHHHHHHHTTTTCCBTTTTSSE
T ss_pred             EEEEECCCCCcHHHH--HHHHHHHhC--CCCEEEEEECccCCcCC-------------HHHHHHHHHhcCcChhHcCCcc
Confidence            999999885433332  222333333  79999999999997531             12222222222       1 13


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      +++++||++|.|++++|++|++.+...
T Consensus       146 ~~~~~Sa~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          146 IFCKLSAKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             EEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred             cEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence            799999999999999999999877543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.96  E-value=1.4e-29  Score=190.89  Aligned_cols=170  Identities=14%  Similarity=0.163  Sum_probs=122.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCC---CCCCccccceeEEEEECCeEEEEEEEeCCCccCccc---ccccccCCCcEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR---LRPLSYRGADVF   81 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~~~~~~~~~~~~   81 (198)
                      ||+++|..|+|||||++++.++..+.   .+.+|.+..+..   ++ ..+.+++|||+||++|.+   .+..++++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~   76 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL   76 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence            69999999999999999887664432   245666555543   22 347899999999999974   357889999999


Q ss_pred             EEEEECCCh--hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH----cCCCEE
Q 029144           82 LLAFSLISK--ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL----IGAPVY  155 (198)
Q Consensus        82 i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  155 (198)
                      |+|||++++  +..... ..|+..+....++.|+++++||+|+.++..+.   ...+.+..++++++++.    .++ +|
T Consensus        77 IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~---~~~R~V~~~~~~~la~~~~~~~~i-~f  151 (331)
T 3r7w_B           77 VYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFKV---DAQRDIMQRTGEELLELGLDGVQV-SF  151 (331)
T ss_dssp             EEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHHH---HHHHHHHHHHHHTTSSSSCSCCCE-EE
T ss_pred             EEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhhh---hHHHHhhHHHHHHHHhhcccccCc-eE
Confidence            999999998  222222 23344455556799999999999997642100   00012566667777775    566 79


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCCCcchHHh
Q 029144          156 IECSSKTQQNVKAVFDAAIKVVLQPPKNKKKK  187 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~~~~  187 (198)
                      |+|||++ .+|.++|..+++.+......-+..
T Consensus       152 ~eTSAkd-~nV~eAFs~iv~~li~~~~~le~~  182 (331)
T 3r7w_B          152 YLTSIFD-HSIYEAFSRIVQKLIPELSFLENM  182 (331)
T ss_dssp             ECCCSSS-SHHHHHHHHHHTTSSTTHHHHHHH
T ss_pred             EEeccCC-CcHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999998 699999999999888655444433

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.96  E-value=7.4e-29  Score=183.57  Aligned_cols=161  Identities=18%  Similarity=0.268  Sum_probs=122.2

Q ss_pred             CceeEEEEECCC---------CCCHHHHHHHHhh---CCCCCCCCCcc-ccc-eeEE--------------EEECCeEEE
Q 029144            4 SRFIKCVTVGDG---------AVGKTCMLISYTS---NTFPTDYVPTV-FDN-FSAN--------------VVVDGSTVN   55 (198)
Q Consensus         4 ~~~~~i~vvG~~---------~~GKttli~~~~~---~~~~~~~~~t~-~~~-~~~~--------------~~~~~~~~~   55 (198)
                      .+.+||+++|.+         |||||||+++|..   +.+...+.+++ +.. ....              ..+++..+.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK   96 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence            467999999999         9999999999998   56666666665 222 1111              114567788


Q ss_pred             EEEEe-----------------------CCCccCcccccccccC---------------------CCcEEEEEEECCCh-
Q 029144           56 LGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFLLAFSLISK-   90 (198)
Q Consensus        56 l~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~~-   90 (198)
                      +.+||                       ++|+++|.+++..+++                     ++|++|+|||++++ 
T Consensus        97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~  176 (255)
T 3c5h_A           97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM  176 (255)
T ss_dssp             EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred             EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence            99999                       7788888888888887                     79999999999998 


Q ss_pred             -hhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-CCCEEEEeccCCCCCH
Q 029144           91 -ASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-GAPVYIECSSKTQQNV  166 (198)
Q Consensus        91 -~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i  166 (198)
                       .+++.+ ..|+..+...  .++.|+++|+||+|+.+...          +  +++..++... +. +++++||+++.|+
T Consensus       177 ~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~----------v--~~~~~~~~~~~~~-~~~e~SAk~g~gv  242 (255)
T 3c5h_A          177 NRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY----------I--RDAHTFALSKKNL-QVVETSARSNVNV  242 (255)
T ss_dssp             --CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH----------H--HHHHHHHHTSSSC-CEEECBTTTTBSH
T ss_pred             hhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH----------H--HHHHHHHHhcCCC-eEEEEECCCCCCH
Confidence             999988 6787777654  26899999999999965432          3  5677777764 65 7999999999999


Q ss_pred             HHHHHHHHHHHc
Q 029144          167 KAVFDAAIKVVL  178 (198)
Q Consensus       167 ~~~~~~i~~~~~  178 (198)
                      +++|++|++.+.
T Consensus       243 ~elf~~l~~~l~  254 (255)
T 3c5h_A          243 DLAFSTLVQLID  254 (255)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999998763

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.96  E-value=2.5e-28  Score=177.90  Aligned_cols=168  Identities=11%  Similarity=0.064  Sum_probs=117.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccceeEEEEECCeEEEEEEEeCCCccCcc---------ccccc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPL   73 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~~~   73 (198)
                      .+.++|+++|.+|+|||||+++++++.+.. .+..++..........++  ..+.+|||||+....         ..+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            467999999999999999999999886642 222223333333344454  567899999983311         11123


Q ss_pred             ccCCCcEEEEEEECCChhhHHHH-HHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHH---HHHHHHHH
Q 029144           74 SYRGADVFLLAFSLISKASYENV-AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTA---QGEELRKL  149 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~~~  149 (198)
                      ++..+|++++|+|++++.++... ...|+..+....++.|+++|+||+|+.+...          +..+   .+..++..
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~  174 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS----------LSIDNKLLIKQILDN  174 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C----------CCHHHHHHHHHHHHH
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh----------hHHHHHHHHHHHHHh
Confidence            46788999999999998776421 1356666666556899999999999976543          3333   45566666


Q ss_pred             cC--CCEEEEeccCCCCCHHHHHHHHHHHHcCCCcch
Q 029144          150 IG--APVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK  184 (198)
Q Consensus       150 ~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~~~  184 (198)
                      .+  . +++++||++|.|++++|++|++.+.......
T Consensus       175 ~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~  210 (228)
T 2qu8_A          175 VKNPI-KFSSFSTLTGVGVEQAKITACELLKNDQAES  210 (228)
T ss_dssp             CCSCE-EEEECCTTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCc-eEEEEecccCCCHHHHHHHHHHHHHHHHHHH
Confidence            65  5 7999999999999999999999886554433

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.96  E-value=1.6e-28  Score=186.33  Aligned_cols=170  Identities=19%  Similarity=0.242  Sum_probs=128.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC--CC-CCCCccccceeEEEEECCeEEEEEEEeCCCccCc-----ccccccccC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-----NRLRPLSYR   76 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~~~~~~~~~   76 (198)
                      ..+||+++|.+|+|||||+++++++..  .. .+.+|....+. .+.+++ .+.+.+||+||++.+     ...+..+++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   79 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ   79 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence            468999999999999999999998732  22 23344433333 344433 478889999999988     778888899


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHH---HHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC-
Q 029144           77 GADVFLLAFSLISKASYENVAKKWI---PELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA-  152 (198)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (198)
                      ++|++++|||++++.+++.+ ..|.   ..+....++.|+++|+||+|+.+....    .....+..+++.+++..++. 
T Consensus        80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r----~~~~~v~~~~~~~~~~~~g~~  154 (307)
T 3r7w_A           80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKR----EELFQIMMKNLSETSSEFGFP  154 (307)
T ss_dssp             TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHH----HHHHHHHHHHHHHHHHTTTCC
T ss_pred             cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhh----hHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999888 5554   444445678999999999999763210    00001455778888988873 


Q ss_pred             -CEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          153 -PVYIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       153 -~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                       .+++++||++ .++.++|..+++.+.....
T Consensus       155 ~~~~~~tSa~~-~~i~e~~~~iv~~li~~~~  184 (307)
T 3r7w_A          155 NLIGFPTSIWD-ESLYKAWSQIVCSLIPNMS  184 (307)
T ss_dssp             SCEEEECCTTS-SHHHHHHHHHHHTTCSCHH
T ss_pred             CeEEEEeeecC-ChHHHHHHHHHHHHcCCHH
Confidence             4899999999 8999999999998765443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.96  E-value=6.6e-28  Score=167.29  Aligned_cols=153  Identities=15%  Similarity=0.188  Sum_probs=112.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCc-cccceeEEEEECCeEEEEEEEeCCCccCccc------ccccccC-
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSYR-   76 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~~-   76 (198)
                      +.++|+++|++|+|||||++++.+..+.....++ +.+.....+.+++  ..+.+|||||++.+..      ....+++ 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            3589999999999999999999987654333333 2333444555666  5678999999988753      2244454 


Q ss_pred             -CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144           77 -GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY  155 (198)
Q Consensus        77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (198)
                       ++|++++|+|+++.+..    ..|+..+...  +.|+++|+||+|+.....          +.. ++..++..++. ++
T Consensus        80 ~~~~~~i~v~D~~~~~~~----~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~----------~~~-~~~~~~~~~~~-~~  141 (165)
T 2wji_A           80 EKPDLVVNIVDATALERN----LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IEI-DVDKLEKILGV-KV  141 (165)
T ss_dssp             HCCSEEEEEEETTCHHHH----HHHHHHHHHT--TCCEEEEEECHHHHHHTT----------CCC-CHHHHHHHHTS-CE
T ss_pred             CCCCEEEEEecCCchhHh----HHHHHHHHhc--CCCEEEEEEchHhccccC----------hhh-HHHHHHHHhCC-CE
Confidence             89999999999886533    3455555554  799999999999975432          222 35667777787 79


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 029144          156 IECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      +++||++|.|++++|+++.+.+
T Consensus       142 ~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          142 VPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             EECBGGGTBSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            9999999999999999998875

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=3e-28  Score=186.34  Aligned_cols=160  Identities=14%  Similarity=0.184  Sum_probs=117.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+|+|.+|+|||||+++|..+.+...+ +|....+ ..+...+  +.+.||||||++.|...+..+++++|++|+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~-~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV-ETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE-EEEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE-EEEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            35689999999999999999999988765443 4443222 2333444  678899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-H----HcCCCEEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-K----LIGAPVYIE  157 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~  157 (198)
                      |||++++.++......|...+.... ++.|+++|+||+|+.+..            ..++..... .    ..+. ++++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~  305 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNW-YIQA  305 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTCTTCCSSCE-EEEE
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc------------CHHHHHHHhchhhhhcCCC-EEEE
Confidence            9999999999998555555555443 689999999999997642            222222211 1    1233 6999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      +||++|.|++++|++|++.+...
T Consensus       306 vSAk~g~gi~el~~~l~~~l~~~  328 (329)
T 3o47_A          306 TCATSGDGLYEGLDWLSNQLRNQ  328 (329)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHTC-
T ss_pred             EECCCCcCHHHHHHHHHHHHHhc
Confidence            99999999999999999988653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.95  E-value=2.1e-27  Score=163.67  Aligned_cols=150  Identities=23%  Similarity=0.189  Sum_probs=107.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCc-------ccccccccCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------NRLRPLSYRG   77 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~~~   77 (198)
                      .||+++|.+|+|||||++++.+..+.  ..+.+++.+........++.  .+.+||+||+..+       ...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            68999999999999999999988642  33344444555556666664  5679999999873       3344567889


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144           78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE  157 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (198)
                      +|++++|+|++++.+...  ..+...+...  +.|+++|+||+|+.+...              ++.+++ ..+..++++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~--------------~~~~~~-~~~~~~~~~  140 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRRK--GKPVILVATKVDDPKHEL--------------YLGPLY-GLGFGDPIP  140 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHHH--TCCEEEEEECCCSGGGGG--------------GCGGGG-GGSSCSCEE
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHhc--CCCEEEEEECcccccchH--------------hHHHHH-hCCCCCeEE
Confidence            999999999998654433  2344444444  799999999999976421              223333 556656999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 029144          158 CSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      +||++|.|++++|+++++.+
T Consensus       141 ~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          141 TSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             CBTTTTBSHHHHHHHHHHHC
T ss_pred             EecccCCChHHHHHHHHHhC
Confidence            99999999999999998865

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.95  E-value=8.1e-28  Score=194.96  Aligned_cols=166  Identities=22%  Similarity=0.289  Sum_probs=124.5

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEE-------EE--CCeEEEEEEEeCCCccCcccccc
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANV-------VV--DGSTVNLGLWDTAGQEDYNRLRP   72 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~-------~~--~~~~~~l~i~D~~G~~~~~~~~~   72 (198)
                      ...+.+||+++|.+|+|||||++++.+..+...+.+|.+..+....       .+  ++..+.+.+||+||++.+...+.
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            4557899999999999999999999999888777788766654322       11  23357788999999999999999


Q ss_pred             cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC
Q 029144           73 LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA  152 (198)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (198)
                      .+++++|++++|+|+++.+.   . ..|+..+....++.|+++|+||+|+.+...          +..++++.++...+.
T Consensus       117 ~~l~~~d~ii~V~D~s~~~~---~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~----------v~~~~~~~~~~~~~~  182 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTDSN---K-HYWLRHIEKYGGKSPVIVVMNKIDENPSYN----------IEQKKINERFPAIEN  182 (535)
T ss_dssp             HHHHSSEEEEEEECGGGGGG---H-HHHHHHHHHHSSSCCEEEEECCTTTCTTCC----------CCHHHHHHHCGGGTT
T ss_pred             HHccCCcEEEEEEeCCCchh---H-HHHHHHHHHhCCCCCEEEEEECCCcccccc----------cCHHHHHHHHHhcCC
Confidence            99999999999999987643   3 678888888777899999999999976543          677788888888887


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          153 PVYIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                       +++++||++|.|+++++..+.+.+.....
T Consensus       183 -~~~~vSA~~g~gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          183 -RFHRISCKNGDGVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             -CEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred             -ceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence             69999999999999999999999876544

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.95  E-value=1.8e-27  Score=169.08  Aligned_cols=159  Identities=18%  Similarity=0.203  Sum_probs=107.9

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-EEEEECCeEEEEEEEeCCC----------ccCcccc
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAG----------QEDYNRL   70 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G----------~~~~~~~   70 (198)
                      .....++|+++|.+|+|||||++++.++.+...+.++.+.... .....++   .+.+||+||          ++.+...
T Consensus        19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~   95 (195)
T 1svi_A           19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM   95 (195)
T ss_dssp             CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence            3456899999999999999999999988755554554433322 2223333   477999999          6666666


Q ss_pred             cccccCCC---cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccH--HHHHH
Q 029144           71 RPLSYRGA---DVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITT--AQGEE  145 (198)
Q Consensus        71 ~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~  145 (198)
                      +..+++.+   |++++|+|++++.++...  .+...+...  +.|+++|+||+|+.+...          +..  +++.+
T Consensus        96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~----------~~~~~~~~~~  161 (195)
T 1svi_A           96 IETYITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKYY--GIPVIVIATKADKIPKGK----------WDKHAKVVRQ  161 (195)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG----------HHHHHHHHHH
T ss_pred             HHHHHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEECcccCChHH----------HHHHHHHHHH
Confidence            66666665   999999999998777654  333444443  799999999999976542          221  23333


Q ss_pred             -HHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          146 -LRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       146 -~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                       +....+. +++++||+++.|++++|++|.+.+.
T Consensus       162 ~~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          162 TLNIDPED-ELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HHTCCTTS-EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHcccCCC-ceEEEEccCCCCHHHHHHHHHHHhc
Confidence             2222344 8999999999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.95  E-value=4.7e-26  Score=172.71  Aligned_cols=165  Identities=15%  Similarity=0.124  Sum_probs=128.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEEC-CeEEEEEEEeCCCccCcc----------
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQEDYN----------   68 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~----------   68 (198)
                      +++..-.|+++|.+|+|||||++++++..+.  .....++..........+ +  ..+.+|||||+..+.          
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~--~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE--AQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT--EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC--CeEEEEECcCCCccccchhHHHHHH
Confidence            3456779999999999999999999988764  333444555555555555 5  667799999986654          


Q ss_pred             cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH
Q 029144           69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK  148 (198)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (198)
                      ..+..+++.+|++++|+|++++.+..+. ..|+..+...  +.|+++|+||+|+.....          ...+....+..
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~----------~~~~~~~~l~~  150 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAK----------NVLPLIDEIHK  150 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGG----------GGHHHHHHHHH
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHH----------HHHHHHHHHHH
Confidence            4445677889999999999998888876 6667777775  899999999999973332          45566677777


Q ss_pred             HcC-CCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          149 LIG-APVYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       149 ~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ..+ ..+++++||++|.|++++|+.+.+.+....
T Consensus       151 ~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~  184 (308)
T 3iev_A          151 KHPELTEIVPISALKGANLDELVKTILKYLPEGE  184 (308)
T ss_dssp             HCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred             hccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCC
Confidence            774 447999999999999999999999886543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.94  E-value=1.1e-26  Score=164.93  Aligned_cols=162  Identities=15%  Similarity=0.132  Sum_probs=113.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCC----------ccCcccccc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLRP   72 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~~   72 (198)
                      ....++|+++|.+|+|||||++++++..+ ..+.++.+..........+  ..+.+||+||          ++.+...+.
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVN--SKYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEET--TTEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEEC--CcEEEEECCCCccccCChhhHHHHHHHHH
Confidence            44678999999999999999999998873 3333444333322222112  2366999999          555666666


Q ss_pred             cccCCC---cEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144           73 LSYRGA---DVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL  149 (198)
Q Consensus        73 ~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (198)
                      .+++.+   +++++|+|++++.+....  .+...+...  +.|+++|+||+|+.+...        .....+++..++..
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~~~~~  164 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSE--------RAKKLEEHRKVFSK  164 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGG--------HHHHHHHHHHHHHS
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHH--------HHHHHHHHHHHHhh
Confidence            666554   999999999876544433  333344444  799999999999975421        12344566666766


Q ss_pred             cCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          150 IGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      .+..+++++||++|.|++++|+++.+.+.+
T Consensus       165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          165 YGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             SCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             cCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            555579999999999999999999998753

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.94  E-value=9.2e-27  Score=164.55  Aligned_cols=159  Identities=15%  Similarity=0.174  Sum_probs=117.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCc-cccceeEEEEECCeEEEEEEEeCCCccCcc------ccccccc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPT-VFDNFSANVVVDGSTVNLGLWDTAGQEDYN------RLRPLSY   75 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~   75 (198)
                      ..+.++|+++|++|+|||||++++.+..+.....++ +.+.....+.+++  ..+.+||+||++.+.      ..+..++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHH
Confidence            446799999999999999999999986543222232 2333444555666  667899999998875      2344455


Q ss_pred             C--CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144           76 R--GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus        76 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                      .  .++++++|+|+++.   +.. ..|...+...  +.|+++|+||+|+.....          +. .+...++...+. 
T Consensus        82 ~~~~~~~~i~v~d~~~~---~~~-~~~~~~~~~~--~~piilv~nK~Dl~~~~~----------~~-~~~~~~~~~~~~-  143 (188)
T 2wjg_A           82 INEKPDLVVNIVDATAL---ERN-LYLTLQLMEM--GANLLLALNKMDLAKSLG----------IE-IDVDKLEKILGV-  143 (188)
T ss_dssp             HHHCCSEEEEEEEGGGH---HHH-HHHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-
T ss_pred             hccCCCEEEEEecchhH---HHH-HHHHHHHHhc--CCCEEEEEEhhhcccccc----------ch-HHHHHHHHHhCC-
Confidence            3  58999999998763   334 4566666554  899999999999976432          22 345677777887 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      +++++||+++.|++++|+++++.+....
T Consensus       144 ~~~~~Sa~~~~~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          144 KVVPLSAAKKMGIEELKKAISIAVKDKK  171 (188)
T ss_dssp             CEEECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHhcc
Confidence            7999999999999999999999887654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.94  E-value=3.2e-26  Score=169.48  Aligned_cols=155  Identities=17%  Similarity=0.178  Sum_probs=117.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc------cccc-
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR------PLSY-   75 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~------~~~~-   75 (198)
                      .+.++|+++|.+|+|||||++++.+..+. .++.+++.......+...+  ..+.+||+||+..+...+      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            46799999999999999999999986542 3333334333344444555  677899999998876543      4444 


Q ss_pred             -CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           76 -RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        76 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                       .++|++++|+|+++.+...    .|...+...  +.|+++|+||+|+.+...          +. .+...++..+++ +
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~----~~~~~l~~~--~~pvilv~NK~Dl~~~~~----------i~-~~~~~l~~~lg~-~  142 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL----YLLLEILEM--EKKVILAMTAIDEAKKTG----------MK-IDRYELQKHLGI-P  142 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH----HHHHHHHTT--TCCEEEEEECHHHHHHTT----------CC-BCHHHHHHHHCS-C
T ss_pred             hcCCCEEEEEeCCCchhhHH----HHHHHHHhc--CCCEEEEEECcCCCCccc----------hH-HHHHHHHHHcCC-C
Confidence             5899999999999876543    344555554  899999999999976543          22 236677888887 7


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHc
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      ++++||++|.|++++|+++.+.+.
T Consensus       143 vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          143 VVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEEeeCCcCHHHHHHHHHHHhh
Confidence            999999999999999999999775

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.94  E-value=5e-27  Score=163.97  Aligned_cols=153  Identities=21%  Similarity=0.237  Sum_probs=112.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc--------ccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS   74 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~   74 (198)
                      ..++|+++|.+|+|||||++++.+...  ...+.+++.+.....+.+++.  .+.+|||||+..+....        ...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            458999999999999999999998753  344555556666677777774  46799999987643211        134


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                      ++++|++++|+|++++.++..  ..|+..+.... .+.|+++|+||+|+.+...         ..        +...+. 
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---------~~--------~~~~~~-  140 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETL---------GM--------SEVNGH-  140 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC---------EE--------EEETTE-
T ss_pred             HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchh---------hh--------hhccCC-
Confidence            789999999999999888764  35656665544 4799999999999964321         00        111344 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +++++||++|.|++++|++|.+.+..
T Consensus       141 ~~~~~SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          141 ALIRLSARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            79999999999999999999987644

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.94  E-value=3.1e-27  Score=167.10  Aligned_cols=157  Identities=18%  Similarity=0.234  Sum_probs=113.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCC-----------ccCccccccccc
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG-----------QEDYNRLRPLSY   75 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~~~~~   75 (198)
                      +||+++|.+|+|||||++++.+..+...+.++.... .....+.    .+.+||+||           ++.+...+..++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   76 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   76 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence            699999999999999999999988766655544222 2223333    477999999           556666666666


Q ss_pred             CC-CcEEEEEEECCChhhHHHHHHHHHHH---------Hhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHH
Q 029144           76 RG-ADVFLLAFSLISKASYENVAKKWIPE---------LRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE  144 (198)
Q Consensus        76 ~~-~~~~i~v~d~~~~~s~~~~~~~~~~~---------~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  144 (198)
                      ++ ++++++|+++.+..++......|...         +... ..+.|+++|+||+|+.+..             .+++.
T Consensus        77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~~~  143 (190)
T 2cxx_A           77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEVIN  143 (190)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHHHH
T ss_pred             HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHHHH
Confidence            66 67666666666666776654455431         1111 1489999999999997531             45677


Q ss_pred             HHHHHcCCC------EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          145 ELRKLIGAP------VYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       145 ~~~~~~~~~------~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      .++...+.+      +++++||++|.|++++|+++.+.+...+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          144 FLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             HHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            778887763      3799999999999999999999886543

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.94  E-value=1.6e-25  Score=169.02  Aligned_cols=162  Identities=17%  Similarity=0.138  Sum_probs=115.1

Q ss_pred             CCCC-ceeEEEEECCCCCCHHHHHHHHhhCCCCC--CCCCccccceeEEEEECCeEEEEEEEeCCCccC--------ccc
Q 029144            1 MSAS-RFIKCVTVGDGAVGKTCMLISYTSNTFPT--DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED--------YNR   69 (198)
Q Consensus         1 m~~~-~~~~i~vvG~~~~GKttli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~   69 (198)
                      |.+. +..+|+++|.+|+|||||++++++..+..  ....|+..........++  ..+.+|||||+..        +..
T Consensus         1 m~~~~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~--~~l~l~DTpG~~~~~~~l~~~~~~   78 (301)
T 1wf3_A            1 MAEKTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQ   78 (301)
T ss_dssp             --CCCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHH
T ss_pred             CCCCccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC--cEEEEecCccccchhhHHHHHHHH
Confidence            4443 46689999999999999999999887642  233344444444444444  6778999999876        334


Q ss_pred             ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144           70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL  149 (198)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (198)
                      ....+++.+|++++|+|++++.+..+  ..+...+....++.|+++|+||+|+.+...          ...+.+..+   
T Consensus        79 ~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~----------~~~~~~~~~---  143 (301)
T 1wf3_A           79 EVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE----------EAMKAYHEL---  143 (301)
T ss_dssp             HHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH----------HHHHHHHHT---
T ss_pred             HHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH----------HHHHHHHHh---
Confidence            45567889999999999998765543  344556666556899999999999965321          011222222   


Q ss_pred             cCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          150 IGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      .+..+++++||++|.|++++++.+.+.+..
T Consensus       144 ~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          144 LPEAEPRMLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence            344579999999999999999999987643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.93  E-value=2.5e-26  Score=171.04  Aligned_cols=153  Identities=16%  Similarity=0.178  Sum_probs=112.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC-CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc------cccccccC-
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN------RLRPLSYR-   76 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~~-   76 (198)
                      +.++|+++|.+|+|||||++++.+.. ...++.+++.+...  ..+.. ...+.+||+||+..+.      ..+..++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~--~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKS--GLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEE--EECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEE--EEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            46899999999999999999999864 34444433333222  22333 4567899999998876      33444554 


Q ss_pred             -CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144           77 -GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY  155 (198)
Q Consensus        77 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (198)
                       ++|++++|+|+++.+..    ..|...+...  +.|+++|+||+|+.....          +. .+...++..+++ ++
T Consensus        79 ~~~d~vi~V~D~t~~e~~----~~~~~~l~~~--~~p~ilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-~v  140 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN----LYLTTQLIET--GIPVTIALNMIDVLDGQG----------KK-INVDKLSYHLGV-PV  140 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH----HHHHHHHHHT--CSCEEEEEECHHHHHHTT----------CC-CCHHHHHHHHTS-CE
T ss_pred             CCCCEEEEEecCCchHhH----HHHHHHHHhc--CCCEEEEEEChhhCCcCC----------cH-HHHHHHHHHcCC-CE
Confidence             69999999999886543    2444455544  899999999999976432          22 345677778887 79


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHc
Q 029144          156 IECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      +++||++|.|++++|+++++.+.
T Consensus       141 i~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          141 VATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             EECBTTTTBSHHHHHHHHHHSCT
T ss_pred             EEEEccCCCCHHHHHHHHHHHHh
Confidence            99999999999999999998764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.93  E-value=1.2e-25  Score=162.99  Aligned_cols=165  Identities=11%  Similarity=0.014  Sum_probs=108.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCC---CCCCCCccccceeEEEEEC-CeEEEEEEEeCCCcc----------Ccc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF---PTDYVPTVFDNFSANVVVD-GSTVNLGLWDTAGQE----------DYN   68 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~---~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~----------~~~   68 (198)
                      ....++|+++|.+|+|||||++++++...   ...+.+++...  ....+. .....+.+|||||..          .+.
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  103 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE  103 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence            34678999999999999999999998862   22222232221  122222 223567799999953          233


Q ss_pred             cccccccCC---CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH
Q 029144           69 RLRPLSYRG---ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE  145 (198)
Q Consensus        69 ~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (198)
                      .....+++.   +|++++|+|++++.+...  ..++..+...  +.|+++|+||+|+.+...        .....+...+
T Consensus       104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~~--~~p~i~v~nK~Dl~~~~~--------~~~~~~~~~~  171 (223)
T 4dhe_A          104 QLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAPT--GKPIHSLLTKCDKLTRQE--------SINALRATQK  171 (223)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGGG--CCCEEEEEECGGGSCHHH--------HHHHHHHHHH
T ss_pred             HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHhc--CCCEEEEEeccccCChhh--------HHHHHHHHHH
Confidence            333344443   788999999988654333  4566666664  899999999999976432        0001222233


Q ss_pred             HHHHc------CCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          146 LRKLI------GAPVYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       146 ~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      .....      ...+++++||++|.|++++|++|.+.+....
T Consensus       172 ~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          172 SLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             HHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             HHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence            33332      3347999999999999999999999886554

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.92  E-value=7e-25  Score=174.46  Aligned_cols=156  Identities=16%  Similarity=0.136  Sum_probs=98.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc--------ccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS   74 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~   74 (198)
                      ..++|+++|.+|+|||||++++.+..  +..++.+++.+.....+.+++  +.+.+|||||+..+...+        ..+
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~  309 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK  309 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence            35899999999999999999999874  455566677777777777887  567799999987765433        346


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      ++++|++++|+|++++.++... ..+...+... .+.|+++|+||+|+.+...          ..   ...+... +..+
T Consensus       310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~----------~~---~~~l~~~-~~~~  373 (476)
T 3gee_A          310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANAD----------AL---IRAIADG-TGTE  373 (476)
T ss_dssp             CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTH----------HH---HHHHHHH-HTSC
T ss_pred             cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccc----------hh---HHHHHhc-CCCc
Confidence            7899999999999998877432 2222222222 2799999999999976542          21   1333333 2247


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHc
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      ++++||++|.|+++++++|.+.+.
T Consensus       374 ~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          374 VIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999886

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.92  E-value=3.3e-25  Score=163.83  Aligned_cols=150  Identities=13%  Similarity=0.217  Sum_probs=113.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccc----------cccccc
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----------LRPLSY   75 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----------~~~~~~   75 (198)
                      .+|+++|.+|+|||||++++.+... ..++.+++.+.....+.+++.  .+.+||+||+..+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999998753 233444444555666667774  677999999987764          344455


Q ss_pred             --CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144           76 --RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus        76 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                        +++|++++|+|+++.+....    +...+...  +.|+++|+||+|+.+...          .. .....+....+. 
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~----l~~~l~~~--~~pvilv~NK~Dl~~~~~----------~~-~~~~~l~~~lg~-  141 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLY----LTSQLFEL--GKPVVVALNMMDIAEHRG----------IS-IDTEKLESLLGC-  141 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHH----HHHHHTTS--CSCEEEEEECHHHHHHTT----------CE-ECHHHHHHHHCS-
T ss_pred             hhCCCCEEEEEeeCCCchhHHH----HHHHHHHc--CCCEEEEEEChhcCCcCC----------cH-HHHHHHHHHcCC-
Confidence              88999999999998655443    33444444  899999999999976542          21 124456777787 


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHH
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      +++++||++|.|++++|.++.+.
T Consensus       142 ~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          142 SVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             CEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            79999999999999999999887

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.92  E-value=2.9e-25  Score=175.82  Aligned_cols=160  Identities=18%  Similarity=0.212  Sum_probs=114.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCcc----------Cccccc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----------DYNRLR   71 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~   71 (198)
                      +..++|+++|.+|+|||||++++++...  ...+.+++.+.....+.+++..  +.+|||||+.          .|...+
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence            3568999999999999999999998765  4555666777677777778754  6799999983          333333


Q ss_pred             c-cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-HHHHH
Q 029144           72 P-LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-ELRKL  149 (198)
Q Consensus        72 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~  149 (198)
                      . .+++.+|++++|+|++++.++++.  .|...+...  +.|+++|+||+|+.+...          ...++.. .+...
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~~--~~~iiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~  316 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH  316 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSCCCT----------THHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHHc--CCcEEEEEECccCCCcch----------HHHHHHHHHHHHh
Confidence            2 367789999999999999888776  566666554  899999999999976432          3333322 22222


Q ss_pred             ---cCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          150 ---IGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       150 ---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                         .+..+++++||++|.|++++|..+.+.+..
T Consensus       317 l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          317 FQFLDYAPILFMSALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence               223379999999999999999999987753

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.92  E-value=1.9e-25  Score=166.77  Aligned_cols=156  Identities=15%  Similarity=0.162  Sum_probs=114.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc----------cc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR----------PL   73 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------~~   73 (198)
                      +.++|+++|.+|+|||||++++.+.... .++.+++.+.....+...+.  .+.+|||||+..+....          ..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence            4689999999999999999999987542 23333444444555555554  46699999998876321          12


Q ss_pred             c--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144           74 S--YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        74 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      +  .+++|++++|+|+++.+...    .|...+...  +.|+++|+||+|+.+...          +. .....+....+
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~----~~~~~l~~~--~~p~ivv~NK~Dl~~~~~----------~~-~~~~~l~~~lg  142 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNL----YLTLQLLEL--GIPCIVALNMLDIAEKQN----------IR-IEIDALSARLG  142 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHH----HHHHHHHHH--TCCEEEEEECHHHHHHTT----------EE-ECHHHHHHHHT
T ss_pred             HHhhcCCCEEEEEecCCChHHHH----HHHHHHHhc--CCCEEEEEECccchhhhh----------HH-HHHHHHHHhcC
Confidence            2  26899999999999865443    344444445  799999999999976432          21 22456677788


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      + +++++||++|.|+++++.++.+.+...
T Consensus       143 ~-~~i~~SA~~g~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          143 C-PVIPLVSTRGRGIEALKLAIDRYKANE  170 (274)
T ss_dssp             S-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred             C-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence            7 799999999999999999999877544

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=8.9e-25  Score=173.96  Aligned_cols=160  Identities=19%  Similarity=0.223  Sum_probs=119.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCC----------ccCccccc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG----------QEDYNRLR   71 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~   71 (198)
                      ...++|+++|.+|+|||||++++.+..  ....+.+++.+.....+..++.  .+.+|||||          ++.|...+
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            357899999999999999999999664  3455666777777777778875  567999999          56666555


Q ss_pred             cc-ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144           72 PL-SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI  150 (198)
Q Consensus        72 ~~-~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (198)
                      .. +++.+|++++|+|++++.+..+  ..|...+...  +.|+++|+||+|+.+...          ...++..+.+...
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~  336 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHEA--GKAVVIVVNKWDAVDKDE----------STMKEFEENIRDH  336 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSCCCS----------SHHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHHc--CCCEEEEEEChhcCCCch----------HHHHHHHHHHHHh
Confidence            43 6788999999999998655443  4666666654  899999999999986543          5556655555543


Q ss_pred             ----CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          151 ----GAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       151 ----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                          +..+++++||++|.|++++|..+.+.+..
T Consensus       337 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          337 FQFLDYAPILFMSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             CGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence                33479999999999999999999987743

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.92  E-value=1.7e-24  Score=161.54  Aligned_cols=157  Identities=18%  Similarity=0.112  Sum_probs=114.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccceeEEEEECCeEEEEEEEeCCCccCccc------cccccc--
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR------LRPLSY--   75 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~--   75 (198)
                      +.++|+++|++|+|||||++++.+..+.. .+..++.+.....+.+++.  .+.+||+||+..+..      .+..++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            35899999999999999999999875422 2223333444455566664  477999999988765      344444  


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144           76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY  155 (198)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (198)
                      .++|++++|+|+++.+.   . ..|...+... ...|+++|+||+|+.+...          ... ....+.+.++. ++
T Consensus        80 ~~~d~vi~v~D~~~~~~---~-~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~----------~~~-~~~~l~~~lg~-~~  142 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---N-LFLTLELFEM-EVKNIILVLNKFDLLKKKG----------AKI-DIKKMRKELGV-PV  142 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---H-HHHHHHHHHT-TCCSEEEEEECHHHHHHHT----------CCC-CHHHHHHHHSS-CE
T ss_pred             cCCcEEEEEecCCcchh---h-HHHHHHHHhc-CCCCEEEEEEChhcCcccc----------cHH-HHHHHHHHcCC-cE
Confidence            68999999999988642   2 2333333333 1399999999999976542          222 25667778887 79


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          156 IECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      +++||++|.|+++++..+.+.+...
T Consensus       143 ~~~Sa~~g~gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          143 IPTNAKKGEGVEELKRMIALMAEGK  167 (271)
T ss_dssp             EECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999987543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.91  E-value=1.4e-25  Score=162.22  Aligned_cols=143  Identities=12%  Similarity=0.150  Sum_probs=100.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCC---CCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCC--
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG--   77 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~--   77 (198)
                      ..+.++|+++|++|+|||||++++....+..   .+.++....+        ....+.+||+||++.+...+..+++.  
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            3467899999999999999999999987644   2334433222        23567799999999998888888776  


Q ss_pred             --CcEEEEEEECC-ChhhHHHHHHHHHHHHhh-----hCCCCCEEEEeecCCcccccccccCCCCCcccc------HHHH
Q 029144           78 --ADVFLLAFSLI-SKASYENVAKKWIPELRH-----YAPGVPIILVGTKLDLRDDKQFLADHPGAVPIT------TAQG  143 (198)
Q Consensus        78 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~  143 (198)
                        +|++++|+|++ ++.++... ..|+..+..     ..++.|+++|+||+|+.+...          +.      .+++
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~l~~~~  149 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP----------PSKIKDALESEI  149 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC----------HHHHHHHHHHHH
T ss_pred             ccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCC----------HHHHHHHHHHHH
Confidence              89999999999 88888887 444444332     225899999999999976532          22      3456


Q ss_pred             HHHHHHcCCCEEEEeccCCCCC
Q 029144          144 EELRKLIGAPVYIECSSKTQQN  165 (198)
Q Consensus       144 ~~~~~~~~~~~~~~~Sa~~~~~  165 (198)
                      ..++...+. +|+++||+++.+
T Consensus       150 ~~~~~~~~~-~~~~~Sa~~~~~  170 (218)
T 1nrj_B          150 QKVIERRKK-SLNEVERKINEE  170 (218)
T ss_dssp             HHHHHHHHH-HHHC--------
T ss_pred             HHHHHHHhc-cccccccccccc
Confidence            666666666 688999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=7.1e-24  Score=168.01  Aligned_cols=153  Identities=23%  Similarity=0.216  Sum_probs=107.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCc---------cccccccc
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSY   75 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~~~~   75 (198)
                      -+|+++|.+|||||||+|++.+..  +..++.+++.+.....+.+++..  +.+|||||++..         ...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence            379999999999999999999875  34556666677777778888854  569999997652         23445678


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHH-HHHHHHcCCCE
Q 029144           76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQG-EELRKLIGAPV  154 (198)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  154 (198)
                      +++|++++|+|++++.+..+.  .+...++..  +.|+++|+||+|+.+.            . ..+. .++. ..+..+
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~~--~~p~ilv~NK~D~~~~------------~-~~~~~~~~~-~lg~~~  141 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDE--SLADFLRKS--TVDTILVANKAENLRE------------F-EREVKPELY-SLGFGE  141 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHH--HHHHHHHHH--TCCEEEEEESCCSHHH------------H-HHHTHHHHG-GGSSCS
T ss_pred             HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCEEEEEeCCCCccc------------c-HHHHHHHHH-hcCCCC
Confidence            999999999999886655432  333444444  7999999999998532            1 1122 3333 456546


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++++||++|.|+.++++++.+.+..
T Consensus       142 ~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          142 PIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             CEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCCHHHHHHHHHHhccc
Confidence            8999999999999999999998853

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.91  E-value=5.8e-24  Score=169.31  Aligned_cols=151  Identities=21%  Similarity=0.252  Sum_probs=116.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCcc-Ccccc--------cccc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE-DYNRL--------RPLS   74 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-~~~~~--------~~~~   74 (198)
                      .++|+++|.+|+|||||++++.+..  +..++.+|+.+.....+.+++  ..+.+|||||+. .+...        ...+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            4899999999999999999999864  466777778777778888887  456799999987 65432        2245


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      ++.+|++++|+|++++.++++.  .++..+    .+.|+++|+||+|+.+.            +..+++..+.. .+. +
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~------------~~~~~~~~~~~-~~~-~  380 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEK------------INEEEIKNKLG-TDR-H  380 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCC------------CCHHHHHHHHT-CST-T
T ss_pred             hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECcccccc------------cCHHHHHHHhc-CCC-c
Confidence            6789999999999998877654  333333    37899999999999642            23344444432 333 6


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHc
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      ++++||++|.|+++++++|.+.+.
T Consensus       381 ~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          381 MVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            899999999999999999999764

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.91  E-value=8.6e-25  Score=171.38  Aligned_cols=157  Identities=16%  Similarity=0.163  Sum_probs=115.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccc-------cc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP-------LS   74 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~   74 (198)
                      ...++|+++|..|+|||||++++.+..+  ...+.+++.+.....+.+.+. ..+.+|||||++.+.....       .+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            3578999999999999999999998765  234445555555566666553 2677999999988876533       36


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      ++++|++++|+|+.....    ...|+..+...  +.|+++|+||+|+.+...          .  +...++...++. +
T Consensus       111 l~~aD~vllVvD~~~~~~----~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~----------~--~~~~~l~~~~g~-~  171 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTPY----EDDVVNLFKEM--EIPFVVVVNKIDVLGEKA----------E--ELKGLYESRYEA-K  171 (423)
T ss_dssp             HTSCSEEEEECSSSCCHH----HHHHHHHHHHT--TCCEEEECCCCTTTTCCC----------T--HHHHHSSCCTTC-C
T ss_pred             HhcCCEEEEEEeCCChHH----HHHHHHHHHhc--CCCEEEEEeCcCCCCccH----------H--HHHHHHHHHcCC-C
Confidence            788999999999933222    25677777776  899999999999987542          2  556666667777 7


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      ++++||++|.|++++|+.|.+.+...
T Consensus       172 v~~vSAktg~gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          172 VLLVSALQKKGFDDIGKTISEILPGD  197 (423)
T ss_dssp             CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence            99999999999999999999998543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.91  E-value=7e-23  Score=154.78  Aligned_cols=158  Identities=16%  Similarity=0.090  Sum_probs=114.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCcc---------Cccccccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE---------DYNRLRPL   73 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~   73 (198)
                      +..+|+++|++|+|||||++++++..+.  .....++.......+..++  ..+.+|||||+.         .+......
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            4568999999999999999999987642  2223344433334444455  567799999987         34455667


Q ss_pred             ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144           74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                      .++.+|++++|+|+++ -+  .....+...+...  +.|+++++||+|+.....          ...+....+...+++.
T Consensus        85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~----------~~~~~l~~l~~~~~~~  149 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLREG--KAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNFL  149 (301)
T ss_dssp             CCCCEEEEEEEEETTC-CC--HHHHHHHHHHHSS--SSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCCS
T ss_pred             HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHHhc--CCCEEEEEECcccCccHH----------HHHHHHHHHHHhcCcC
Confidence            8899999999999977 22  2213334444433  799999999999975221          2334556666667766


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      .++++||+++.|++++++.+.+.+..
T Consensus       150 ~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          150 DIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             EEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhCCc
Confidence            79999999999999999999987654

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.90  E-value=1.9e-23  Score=160.45  Aligned_cols=124  Identities=18%  Similarity=0.186  Sum_probs=94.8

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCC
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKLD  121 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D  121 (198)
                      +.+.+||++|++.+++.|..++++++++|+|||+++          ..++.+. ..|+..+...  .++.|+++++||+|
T Consensus       193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcEEEEEECcC
Confidence            778899999999999999999999999999999999          4568877 4555555442  36899999999999


Q ss_pred             cccccccc-----cCCCCCccccHHHHHHHHHH-----------cCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          122 LRDDKQFL-----ADHPGAVPITTAQGEELRKL-----------IGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       122 l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +.+.....     .-......++.+++..++..           .++ .+++|||+++.||+++|.++.+.+..
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHHHHHHHHH
Confidence            96533100     00011112567788887762           344 68899999999999999999998854

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.90  E-value=1.1e-22  Score=157.34  Aligned_cols=161  Identities=18%  Similarity=0.136  Sum_probs=115.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc---------ccc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL---------RPL   73 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~---------~~~   73 (198)
                      ...++|+++|.+|+|||||++++.+..... .+..++.......+...+  ..+.+|||||...+...         ...
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            356899999999999999999999875421 222222222223333344  56789999998553211         112


Q ss_pred             ccCCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144           74 SYRGADVFLLAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      ....+|++++|+|++++.  ++... ..|+..+....++.|+++|+||+|+.....            .++...++...+
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~~------------~~~~~~~~~~~~  309 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEEN------------IKRLEKFVKEKG  309 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHHH------------HHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChHH------------HHHHHHHHHhcC
Confidence            345689999999998876  56666 677777776555899999999999976432            244556666667


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      . +++++||++|+|++++++++.+.+...
T Consensus       310 ~-~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          310 L-NPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             C-CCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             C-CeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            6 799999999999999999999988543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.90  E-value=1.2e-22  Score=159.44  Aligned_cols=171  Identities=13%  Similarity=0.033  Sum_probs=115.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCC--CCcc-cc----ceeEEE---------EE---CCeEEEEEEEeCC
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--VPTV-FD----NFSANV---------VV---DGSTVNLGLWDTA   62 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~--~~t~-~~----~~~~~~---------~~---~~~~~~l~i~D~~   62 (198)
                      .....++|+++|++++|||||+++|.+.......  ..+. ..    .....+         ..   ......+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            3456799999999999999999999875332210  0000 00    000000         00   1123678899999


Q ss_pred             CccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH
Q 029144           63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ  142 (198)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  142 (198)
                      |++.|...+...+..+|++++|+|++++.++... .+++..+... ...|+++|+||+|+.+...        .....++
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~-~~~~iivviNK~Dl~~~~~--------~~~~~~~  153 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGII-GVKNLIIVQNKVDVVSKEE--------ALSQYRQ  153 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHH-TCCCEEEEEECGGGSCHHH--------HHHHHHH
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHc-CCCCEEEEEECccccchHH--------HHHHHHH
Confidence            9999999988899999999999999987755555 4555555544 1358999999999976431        0011223


Q ss_pred             HHHHHHHcC--CCEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          143 GEELRKLIG--APVYIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       143 ~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      ..++....+  ..+++++||++|.|++++++.|.+.+.....
T Consensus       154 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~  195 (403)
T 3sjy_A          154 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYR  195 (403)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCC
Confidence            333333221  2369999999999999999999997765443

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.89  E-value=2.2e-23  Score=158.02  Aligned_cols=128  Identities=16%  Similarity=0.113  Sum_probs=94.5

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCc
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENVAKKWIPELRHYA-PGVPIILVGTKLDL  122 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl  122 (198)
                      +.+++||++||+++++.|.+++++++++|+|||++          +..++.+....|...+.... .+.|+++++||+|+
T Consensus       167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL  246 (327)
T 3ohm_A          167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL  246 (327)
T ss_dssp             EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHH
T ss_pred             eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchh
Confidence            77889999999999999999999999999999665          66677777444443333322 68999999999999


Q ss_pred             cccccccc------CCCCCccccHHHHHHHHH----------HcCCCEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          123 RDDKQFLA------DHPGAVPITTAQGEELRK----------LIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       123 ~~~~~~~~------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      .+.+....      ..-.....+.+++..+..          ..++ .+++|||+++.||+.+|..+.+.+.....
T Consensus       247 ~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~nV~~vF~~v~~~Il~~~l  321 (327)
T 3ohm_A          247 LEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTENIRFVFAAVKDTILQLNL  321 (327)
T ss_dssp             HHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence            76442100      011112356777777743          3344 57889999999999999999998876543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.89  E-value=1.1e-24  Score=174.95  Aligned_cols=162  Identities=18%  Similarity=0.183  Sum_probs=113.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEE-CCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVV-DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      ++..+|+++|++++|||||+++|.+..+...+.++....+ ...+.. ++  ..+.||||||++.|..++...++.+|++
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g--~~i~~iDTPGhe~f~~~~~~~~~~aD~v   79 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG--EKITFLDTPGHAAFSAMRARGTQVTDIV   79 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS--SCCBCEECSSSCCTTTSBBSSSBSBSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC--CEEEEEECCChHHHHHHHHHHHccCCEE
Confidence            4678999999999999999999987654333333332222 222222 23  3567999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH---HHHcC-CCEEEE
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL---RKLIG-APVYIE  157 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~  157 (198)
                      ++|+|++++...+..  +++..+...  +.|+++|+||+|+.+...     .    ....+...+   ...++ ..++++
T Consensus        80 ILVVDa~dg~~~qt~--e~l~~~~~~--~vPiIVViNKiDl~~~~~-----~----~v~~~l~~~~~~~e~~~~~~~iv~  146 (537)
T 3izy_P           80 ILVVAADDGVMKQTV--ESIQHAKDA--HVPIVLAINKCDKAEADP-----E----KVKKELLAYDVVCEDYGGDVQAVH  146 (537)
T ss_dssp             EEECBSSSCCCHHHH--HHHHHHHTT--TCCEEECCBSGGGTTTSC-----C----SSSSHHHHTTSCCCCSSSSEEECC
T ss_pred             EEEEECCCCccHHHH--HHHHHHHHc--CCcEEEEEecccccccch-----H----HHHHHHHhhhhhHHhcCCCceEEE
Confidence            999999987666554  333444444  789999999999975321     0    111111111   11221 237899


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCC
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      +||++|.|++++|+.+...+...
T Consensus       147 vSAktG~GI~eLle~I~~l~~~~  169 (537)
T 3izy_P          147 VSALTGENMMALAEATIALAEML  169 (537)
T ss_dssp             CCSSSSCSSHHHHHHHHHHHTTC
T ss_pred             EECCCCCCchhHHHHHHHhhhcc
Confidence            99999999999999999887543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.89  E-value=4.2e-22  Score=156.52  Aligned_cols=166  Identities=19%  Similarity=0.148  Sum_probs=104.9

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCC---CCCCCCC--ccccceeE-EEEE-------------C--C----eEEE
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVP--TVFDNFSA-NVVV-------------D--G----STVN   55 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~   55 (198)
                      |+....++|+++|+.++|||||++++.+..   +..+..+  |....+.. ....             +  +    ....
T Consensus         3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   82 (408)
T 1s0u_A            3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR   82 (408)
T ss_dssp             --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred             cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence            345678999999999999999999998432   2222222  22211111 1110             1  1    1367


Q ss_pred             EEEEeCCCccCcccccccccCCCcEEEEEEECCCh----hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC
Q 029144           56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISK----ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD  131 (198)
Q Consensus        56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  131 (198)
                      +.+||+||++.|...+...+..+|++++|+|++++    .+.+.+     ..+... ...|+++|+||+|+.+...    
T Consensus        83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~l-~~~~iivv~NK~Dl~~~~~----  152 (408)
T 1s0u_A           83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-----MALEIL-GIDKIIIVQNKIDLVDEKQ----  152 (408)
T ss_dssp             EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-----HHHHHT-TCCCEEEEEECTTSSCTTT----
T ss_pred             EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-----HHHHHc-CCCeEEEEEEccCCCCHHH----
Confidence            89999999999988877888899999999999864    333332     222222 2358999999999976431    


Q ss_pred             CCCCccccHHHHHHHHHHc---CCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          132 HPGAVPITTAQGEELRKLI---GAPVYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                          .....+++.+++...   +. +++++||++|.|+++++++|.+.+..+.
T Consensus       153 ----~~~~~~~i~~~l~~~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~i~~~~  200 (408)
T 1s0u_A          153 ----AEENYEQIKEFVKGTIAENA-PIIPISAHHEANIDVLLKAIQDFIPTPK  200 (408)
T ss_dssp             ----TTTHHHHHHHHHTTSTTTTC-CEEEC------CHHHHHHHHHHHSCCCC
T ss_pred             ----HHHHHHHHHHHHhhcCCCCC-eEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence                112345566666543   33 7999999999999999999998776543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.89  E-value=7.7e-23  Score=162.21  Aligned_cols=154  Identities=23%  Similarity=0.290  Sum_probs=107.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc--------ccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLS   74 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~   74 (198)
                      ..++|+++|.+|+|||||++++.+..  +.....+++.+.....+.+++  ..+.+|||||+..+...+        ...
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~  300 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA  300 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence            35799999999999999999998753  355566676666667777888  456799999986654332        235


Q ss_pred             cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCE
Q 029144           75 YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPV  154 (198)
Q Consensus        75 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (198)
                      ++++|++++|+|++++.+...  ..|+..+.    +.|+++|+||+|+.+...          ..  ....+.  .+ .+
T Consensus       301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~----------~~--~~~~~~--~~-~~  359 (462)
T 3geh_A          301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQL----------IT--SLEYPE--NI-TQ  359 (462)
T ss_dssp             CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGG----------ST--TCCCCT--TC-CC
T ss_pred             hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchh----------hH--HHHHhc--cC-Cc
Confidence            788999999999999877655  35555553    479999999999976543          11  000111  22 36


Q ss_pred             EEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          155 YIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ++++||++|.|+++++++|.+.+....
T Consensus       360 ~i~iSAktg~Gi~eL~~~i~~~~~~~~  386 (462)
T 3geh_A          360 IVHTAAAQKQGIDSLETAILEIVQTGK  386 (462)
T ss_dssp             EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999886543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=4.4e-22  Score=157.75  Aligned_cols=159  Identities=21%  Similarity=0.192  Sum_probs=108.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc-----------
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----------   71 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-----------   71 (198)
                      ..++|+++|++|+|||||++++.+...  ..++.+++.+.....+.+++..  +.+|||||..++....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHHH
Confidence            468999999999999999999998754  4555666666667777888864  5699999985433221           


Q ss_pred             -ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH-HHHHH
Q 029144           72 -PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-ELRKL  149 (198)
Q Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~  149 (198)
                       ...++.+|++++|+|++++.+..+.  .+...+...  +.|+++|+||+|+.+...          ...++.. .+...
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~~--~~~~ilv~NK~Dl~~~~~----------~~~~~~~~~~~~~  322 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK  322 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCCCchh----------hHHHHHHHHHHHH
Confidence             1245678999999999987666543  344444444  899999999999976432          2333322 22222


Q ss_pred             ---cCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          150 ---IGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       150 ---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                         .+..+++++||++|.|++++|+.+.+.+..
T Consensus       323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             hccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence               233379999999999999999999887643

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.89  E-value=7.9e-23  Score=156.95  Aligned_cols=126  Identities=16%  Similarity=0.122  Sum_probs=91.4

Q ss_pred             eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhh--CCCCCEEEEeec
Q 029144           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENVAKKWIPELRHY--APGVPIILVGTK  119 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK  119 (198)
                      ..+.+++||++|++.|++.|..++++++++|+|||++          +..++... ..|...+...  .++.|+++|+||
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK  259 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMET-KELFDWVLKQPCFEKTSFMLFLNK  259 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEEC
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHH-HHHHHHHHhccccCCCeEEEEEEC
Confidence            5688999999999999999999999999999999998          78889888 5555555432  368999999999


Q ss_pred             CCcccccccc---------cCCC--CCccccHHHHHHHHHHc--------------C-CCEEEEeccCCCCCHHHHHHHH
Q 029144          120 LDLRDDKQFL---------ADHP--GAVPITTAQGEELRKLI--------------G-APVYIECSSKTQQNVKAVFDAA  173 (198)
Q Consensus       120 ~Dl~~~~~~~---------~~~~--~~~~~~~~~~~~~~~~~--------------~-~~~~~~~Sa~~~~~i~~~~~~i  173 (198)
                      +|+.++....         ++..  .....+.+++..++...              + ...+++|||+++.||+++|.++
T Consensus       260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v  339 (354)
T 2xtz_A          260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV  339 (354)
T ss_dssp             HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence            9996543200         0000  00112356666664431              1 2246899999999999999999


Q ss_pred             HHHHc
Q 029144          174 IKVVL  178 (198)
Q Consensus       174 ~~~~~  178 (198)
                      .+.+.
T Consensus       340 ~~~I~  344 (354)
T 2xtz_A          340 DETLR  344 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.89  E-value=2.6e-22  Score=148.79  Aligned_cols=159  Identities=17%  Similarity=0.158  Sum_probs=106.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC-CCCCCCC--ccccceeEEEEECCeEEEEEEEeCCCccCcccccc---------
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYVP--TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP---------   72 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~-~~~~~~~--t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~---------   72 (198)
                      +.++|+++|.+|+|||||++++++.. +...+.+  ++.........+++  ..+.+|||||+..+.....         
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            57899999999999999999999876 4433334  33444445556666  4577999999876543322         


Q ss_pred             --cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEee-cCCcccccccccCCCCCccccH------
Q 029144           73 --LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGT-KLDLRDDKQFLADHPGAVPITT------  140 (198)
Q Consensus        73 --~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~n-K~Dl~~~~~~~~~~~~~~~~~~------  140 (198)
                        ..++.+|++++|+|+++.....   ..+...+....   ...|.++++| |+|+....           +..      
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-----------~~~~i~~~~  164 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQD---QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-----------LMDYMHDSD  164 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-----------HHHHHHHCC
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHH---HHHHHHHHHHhCchhhccEEEEEEcccccCCcc-----------HHHHHHhcc
Confidence              2568899999999998622222   22223333322   1456666666 99997432           211      


Q ss_pred             -HHHHHHHHHcCCCE--E--EEeccCCCCCHHHHHHHHHHHHcC
Q 029144          141 -AQGEELRKLIGAPV--Y--IECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       141 -~~~~~~~~~~~~~~--~--~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                       ++++.+....+...  +  +++||+++.|++++|..|.+.+..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          165 NKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             CHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence             33455666554321  2  789999999999999999998754

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.89  E-value=3e-22  Score=162.66  Aligned_cols=165  Identities=17%  Similarity=0.219  Sum_probs=116.9

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhC--CCCCC-----CCCcc------ccce---eEEEEE---CCeEEEEEEEeC
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----YVPTV------FDNF---SANVVV---DGSTVNLGLWDT   61 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~-----~~~t~------~~~~---~~~~~~---~~~~~~l~i~D~   61 (198)
                      |..++..+|+++|+.++|||||+++++..  .+...     ...+.      +..+   ...+.+   ++..+.+++|||
T Consensus         1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT   80 (600)
T 2ywe_A            1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT   80 (600)
T ss_dssp             CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred             CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence            55567889999999999999999999853  22111     00000      0001   112222   455688999999


Q ss_pred             CCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHH
Q 029144           62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTA  141 (198)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~  141 (198)
                      ||+.+|...+...++.+|++++|+|++++.+.+.. ..|..... .  +.|+++|+||+|+....            ..+
T Consensus        81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~-~--~ipiIvviNKiDl~~a~------------~~~  144 (600)
T 2ywe_A           81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE-Q--DLVIIPVINKIDLPSAD------------VDR  144 (600)
T ss_dssp             CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH-T--TCEEEEEEECTTSTTCC------------HHH
T ss_pred             CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH-C--CCCEEEEEeccCccccC------------HHH
Confidence            99999998888889999999999999998877766 55554443 2  79999999999997532            122


Q ss_pred             HHHHHHHHcCCC--EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          142 QGEELRKLIGAP--VYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       142 ~~~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ...++....+..  .++++||++|.|++++|+++++.+..+.
T Consensus       145 v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~  186 (600)
T 2ywe_A          145 VKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK  186 (600)
T ss_dssp             HHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence            344555555542  3899999999999999999999887654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.89  E-value=5.5e-23  Score=157.32  Aligned_cols=159  Identities=19%  Similarity=0.210  Sum_probs=116.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCcc----CcccccccccC---CCc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE----DYNRLRPLSYR---GAD   79 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~~~---~~~   79 (198)
                      +|+++|.+|+|||||++++...... ..+..++.......+.+++. ..+.+||+||+.    .+..+...+++   .++
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            6899999999999999999876431 23333443333334444431 356799999953    34444444544   499


Q ss_pred             EEEEEEECCC---hhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC-
Q 029144           80 VFLLAFSLIS---KASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA-  152 (198)
Q Consensus        80 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (198)
                      ++++|+|+++   +.+++.. ..|...+..+.   .+.|+++|+||+|+.+..              +....+...+.. 
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--------------e~~~~l~~~l~~~  303 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTDD  303 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCSC
T ss_pred             EEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--------------HHHHHHHHHhhcC
Confidence            9999999998   7788887 77888887764   489999999999996532              234556666552 


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          153 PVYIECSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      .+++++||+++.|+++++.+|.+.+.....
T Consensus       304 ~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          304 YPVFPISAVTREGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             CCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence            268999999999999999999999876543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.88  E-value=2.9e-22  Score=160.12  Aligned_cols=160  Identities=19%  Similarity=0.153  Sum_probs=110.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCC----C---CCCCCC-ccccceeEEEEECCeEEEEEEEeCCCccCccccccccc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNT----F---PTDYVP-TVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSY   75 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~----~---~~~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~   75 (198)
                      .+.++|+++|+.++|||||++++.+..    .   ..+..+ .+.+.....+.+++  ..+.+||+||++.|...+...+
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence            357899999999999999999998765    1   111111 11111122344455  5678999999999988888889


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc----C
Q 029144           76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI----G  151 (198)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  151 (198)
                      ..+|++++|+|++++...+..  +.+..+...  ++|+++|+||+|+.+...        .....++..++....    +
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~ip~IvviNK~Dl~~~~~--------~~~~~~~l~~~l~~~~~~~~  162 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEE--------IKRTEMIMKSILQSTHNLKN  162 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHH--------HHHHHHHHHHHHHHSSSGGG
T ss_pred             hhCCEEEEEEecCCCccHHHH--HHHHHHHHc--CCCEEEEEECCCcccchh--------HHHHHHHHHHHHhhhccccc
Confidence            999999999999884322221  222334444  789999999999975321        012334455555544    3


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      . +++++||++|.|++++++.|.+.+.
T Consensus       163 ~-~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          163 S-SIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             C-CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             c-eEEEEECcCCCCHHHHHHHHHHhhc
Confidence            4 7999999999999999999999774

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.88  E-value=6.2e-22  Score=152.50  Aligned_cols=125  Identities=15%  Similarity=0.100  Sum_probs=85.6

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCc
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENVAKKWIPELRHY-APGVPIILVGTKLDL  122 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl  122 (198)
                      +.+.+||++|++.++..|..++++++++|+|+|+++          ..++.+....|...+... ..+.|+++++||+|+
T Consensus       201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL  280 (362)
T 1zcb_A          201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL  280 (362)
T ss_dssp             EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred             eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhh
Confidence            678899999999999999999999999999999999          678888844444444332 368999999999999


Q ss_pred             ccccccc----c-CCCCCc-cccHHHHHHHHH-----------HcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          123 RDDKQFL----A-DHPGAV-PITTAQGEELRK-----------LIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       123 ~~~~~~~----~-~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      .......    . -.+... .++.+++..++.           ..++ .+++|||+++.|++++|+++.+.+..
T Consensus       281 ~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          281 LEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCCchhHHHHHHHHHHHHHH
Confidence            7543100    0 000011 155677776652           2334 68899999999999999999998753

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=1.4e-23  Score=166.13  Aligned_cols=152  Identities=16%  Similarity=0.143  Sum_probs=101.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCcc--------CcccccccccC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE--------DYNRLRPLSYR   76 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~~~~   76 (198)
                      .+|+++|.+|+|||||++++.+...  ..++.+++.+.......+.+  ..+.+|||||++        .+...+..+++
T Consensus         4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            6899999999999999999998654  23444444444444444455  457799999985        45566667788


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      ++|++++|+|+.++.+..+.  ++...++..  +.|+++|+||+|+.+...              +..++. ..+...++
T Consensus        82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~~--~~pvilv~NK~D~~~~~~--------------~~~~~~-~lg~~~~~  142 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAADE--EVAKILYRT--KKPVVLAVNKLDNTEMRA--------------NIYDFY-SLGFGEPY  142 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHHH--HHHHHHTTC--CSCEEEEEECCCC-------------------CCCSSG-GGSSCCCE
T ss_pred             hCCEEEEEEeCCCCCCHHHH--HHHHHHHHc--CCCEEEEEECccCccchh--------------hHHHHH-HcCCCCeE
Confidence            99999999999987776543  455555544  899999999999975321              001111 34544689


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++||++|.|+.++++++.+.+..
T Consensus       143 ~iSA~~g~gv~~L~~~i~~~l~~  165 (436)
T 2hjg_A          143 PISGTHGLGLGDLLDAVAEHFKN  165 (436)
T ss_dssp             ECBTTTTBTHHHHHHHHHHTGGG
T ss_pred             EEeCcCCCChHHHHHHHHHhcCc
Confidence            99999999999999999998864

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.88  E-value=4.1e-22  Score=162.16  Aligned_cols=162  Identities=17%  Similarity=0.227  Sum_probs=112.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC--CCCC-----CCCCc------cccce---eEEEEE---CCeEEEEEEEeCCCc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPT-----DYVPT------VFDNF---SANVVV---DGSTVNLGLWDTAGQ   64 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~~-----~~~~t------~~~~~---~~~~~~---~~~~~~l~i~D~~G~   64 (198)
                      ++..+|+++|+.++|||||+++++..  .+..     .+..+      .+..+   ...+.+   ++..+.+++|||||+
T Consensus         2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh   81 (599)
T 3cb4_D            2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH   81 (599)
T ss_dssp             TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence            45679999999999999999999863  2211     01010      01111   112222   455688999999999


Q ss_pred             cCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH
Q 029144           65 EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE  144 (198)
Q Consensus        65 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  144 (198)
                      .+|...+...++.+|++++|+|++++.+.+.. ..|..... .  ++|+++|+||+|+....            ..+...
T Consensus        82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~-~--~ipiIvViNKiDl~~a~------------~~~v~~  145 (599)
T 3cb4_D           82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAME-M--DLEVVPVLNKIDLPAAD------------PERVAE  145 (599)
T ss_dssp             GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHH-T--TCEEEEEEECTTSTTCC------------HHHHHH
T ss_pred             hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH-C--CCCEEEeeeccCccccc------------HHHHHH
Confidence            99999888899999999999999998777666 55554443 2  78999999999997632            222334


Q ss_pred             HHHHHcCCC--EEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          145 ELRKLIGAP--VYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       145 ~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ++....+..  .++++||++|.|++++++++.+.+..+.
T Consensus       146 ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~  184 (599)
T 3cb4_D          146 EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE  184 (599)
T ss_dssp             HHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred             HHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence            455555542  4899999999999999999999887654

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.87  E-value=2.3e-21  Score=142.00  Aligned_cols=169  Identities=17%  Similarity=0.135  Sum_probs=105.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCC---ccccceeEEEEECCeEEEEEEEeCCCcc-----------Ccc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVP---TVFDNFSANVVVDGSTVNLGLWDTAGQE-----------DYN   68 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~i~D~~G~~-----------~~~   68 (198)
                      ....++|+++|.+|+|||||++++++..+.....+   ++.........+++.  .+.+|||||..           .+.
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHH
Confidence            34679999999999999999999998876544333   223334445566664  56799999943           333


Q ss_pred             cccccccCCCcEEEEEEECCChhhHHH-HHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144           69 RLRPLSYRGADVFLLAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR  147 (198)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (198)
                      ......++++|++++|+|+++...... ....+...+... ...|+++|+||+|+.+....    ........+.++.+.
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~----~~~i~~~~~~l~~l~  178 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER-ARSFMILIFTRKDDLGDTNL----HDYLREAPEDIQDLM  178 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH-HGGGEEEEEECGGGC----------------CHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh-ccceEEEEEeCCccCCcccH----HHHHHhchHHHHHHH
Confidence            444455678999999999876443211 112222222221 24699999999999764320    000001124577788


Q ss_pred             HHcCCCEEEEeccCCC-----CCHHHHHHHHHHHHcC
Q 029144          148 KLIGAPVYIECSSKTQ-----QNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       148 ~~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~~~~  179 (198)
                      ...+. .|+.++...+     .++.++|..+.+.+..
T Consensus       179 ~~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          179 DIFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            88877 5777766643     6899999998887743

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.87  E-value=2.1e-21  Score=152.67  Aligned_cols=164  Identities=18%  Similarity=0.131  Sum_probs=109.5

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCC---CCCCCCC--ccccceeE-EEEE-------------C--C----eEEEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNT---FPTDYVP--TVFDNFSA-NVVV-------------D--G----STVNLG   57 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~l~   57 (198)
                      ....++|+++|+.++|||||+++|.+..   +.++..+  |....+.. ....             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            3457899999999999999999998542   2222222  22111111 1100             1  1    136788


Q ss_pred             EEeCCCccCcccccccccCCCcEEEEEEECCChh----hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144           58 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA----SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP  133 (198)
Q Consensus        58 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~----s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  133 (198)
                      +||+||++.|.......+..+|++++|+|++++.    +.+.+     ..+... ...|+++|+||+|+.+...      
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-----~~~~~~-~~~~iivviNK~Dl~~~~~------  154 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-----MALQII-GQKNIIIAQNKIELVDKEK------  154 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-----HHHHHH-TCCCEEEEEECGGGSCHHH------
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-----HHHHHc-CCCcEEEEEECccCCCHHH------
Confidence            9999999999877777788899999999998643    33322     222222 2358999999999976431      


Q ss_pred             CCccccHHHHHHHHHH---cCCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          134 GAVPITTAQGEELRKL---IGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       134 ~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                        .....+++.++...   .+. +++++||++|.|+++++++|.+.+..+.
T Consensus       155 --~~~~~~~i~~~l~~~~~~~~-~~i~vSA~~g~gi~~L~~~l~~~~~~p~  202 (410)
T 1kk1_A          155 --ALENYRQIKEFIEGTVAENA-PIIPISALHGANIDVLVKAIEDFIPTPK  202 (410)
T ss_dssp             --HHHHHHHHHHHHTTSTTTTC-CEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred             --HHHHHHHHHHHHHhcCcCCC-eEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence              00123444555543   233 7999999999999999999998776543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.87  E-value=4.9e-22  Score=151.11  Aligned_cols=127  Identities=15%  Similarity=0.138  Sum_probs=93.7

Q ss_pred             EEEEEEEeCCCccCcccccccccCCCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCC
Q 029144           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLI----------SKASYENVAKKWIPELRHYA-PGVPIILVGTKLD  121 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D  121 (198)
                      .+.+++||++||+++++.|..++++++++|+|||++          +..++.+....|...+.... ++.|+++++||+|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~D  239 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMD  239 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHH
T ss_pred             eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECch
Confidence            377889999999999999999999999999999998          67788888444444444433 6899999999999


Q ss_pred             ccccccccc-----CCCCCccccHHHHHHHHHHcC--------------------------CCEEEEeccCCCCCHHHHH
Q 029144          122 LRDDKQFLA-----DHPGAVPITTAQGEELRKLIG--------------------------APVYIECSSKTQQNVKAVF  170 (198)
Q Consensus       122 l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~Sa~~~~~i~~~~  170 (198)
                      +........     -.......+.+++..++....                          ...++++||++..|++.+|
T Consensus       240 L~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF  319 (340)
T 4fid_A          240 LFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVF  319 (340)
T ss_dssp             HHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHH
T ss_pred             hhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHH
Confidence            976432110     011111124566655443211                          1257889999999999999


Q ss_pred             HHHHHHHcC
Q 029144          171 DAAIKVVLQ  179 (198)
Q Consensus       171 ~~i~~~~~~  179 (198)
                      ..+.+.++.
T Consensus       320 ~~v~~~Il~  328 (340)
T 4fid_A          320 MLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998876

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.87  E-value=2.3e-21  Score=150.49  Aligned_cols=124  Identities=14%  Similarity=0.189  Sum_probs=91.8

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCC
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS----------KASYENVAKKWIPELRHY--APGVPIILVGTKLD  121 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D  121 (198)
                      +.+++||++|++.|++.|..++++++++|+|||+++          ..++... ..|+..+...  .++.|+++|+||+|
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEEEEEEChh
Confidence            778899999999999999999999999999999999          8889988 5666665543  36899999999999


Q ss_pred             cccccc---ccc------CCC----------C-CccccHHHHHHHH-----HH--------cCCCEEEEeccCCCCCHHH
Q 029144          122 LRDDKQ---FLA------DHP----------G-AVPITTAQGEELR-----KL--------IGAPVYIECSSKTQQNVKA  168 (198)
Q Consensus       122 l~~~~~---~~~------~~~----------~-~~~~~~~~~~~~~-----~~--------~~~~~~~~~Sa~~~~~i~~  168 (198)
                      +.....   ...      +..          . ...-..+++..++     ..        .++ .+++|||+++.||++
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~-~~~~TSA~d~~nV~~  374 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC-YPHFTCAVDTENIRR  374 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE-EEEECCTTCHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc-EEEEEEeecCcCHHH
Confidence            965432   100      000          0 0001234555553     22        123 577999999999999


Q ss_pred             HHHHHHHHHcC
Q 029144          169 VFDAAIKVVLQ  179 (198)
Q Consensus       169 ~~~~i~~~~~~  179 (198)
                      +|..+.+.+..
T Consensus       375 vF~~v~~~I~~  385 (402)
T 1azs_C          375 VFNDCRDIIQR  385 (402)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887753

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.86  E-value=4.1e-21  Score=154.64  Aligned_cols=115  Identities=14%  Similarity=0.080  Sum_probs=83.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCC-------------CC----C------CCccccceeEEEEECCeEEEEEEEeC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-------------TD----Y------VPTVFDNFSANVVVDGSTVNLGLWDT   61 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~-------------~~----~------~~t~~~~~~~~~~~~~~~~~l~i~D~   61 (198)
                      +..+|+++|++|+|||||+++|+...-.             ..    +      ...+.......+.+.+  +.+++|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEEC
Confidence            5679999999999999999999621100             00    0      0001111122344455  67789999


Q ss_pred             CCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      ||+.+|...+...++.+|++|+|+|++++.+.... ..| ..+...  ++|+++|+||+|+...
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~~--~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRLR--HTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSCCS
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHHc--CCCEEEEEeCCCCccc
Confidence            99999999999999999999999999998777665 333 444444  7999999999999653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.86  E-value=5.8e-22  Score=156.81  Aligned_cols=162  Identities=14%  Similarity=0.124  Sum_probs=103.9

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhC--CCCCCC------------------------------CCccccceeEEEE
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTDY------------------------------VPTVFDNFSANVV   48 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~~------------------------------~~t~~~~~~~~~~   48 (198)
                      |.+...++|+++|+.++|||||+++|+..  .+....                              ...+.+.....+.
T Consensus         1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~   80 (435)
T 1jny_A            1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE   80 (435)
T ss_dssp             ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred             CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence            66778899999999999999999999864  332110                              0011111111122


Q ss_pred             ECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHH------HHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           49 VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVA------KKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~------~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      ..  ...+.+|||||+++|...+...++.+|++|+|+|+++ .+++...      .+....+... .-.|+++++||+|+
T Consensus        81 ~~--~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl  156 (435)
T 1jny_A           81 TK--KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDL  156 (435)
T ss_dssp             CS--SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGG
T ss_pred             cC--CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccC
Confidence            23  3568899999999999888889999999999999998 5555321      2222222222 12468999999999


Q ss_pred             ccccccccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHHHH
Q 029144          123 RDDKQFLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKAVF  170 (198)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~~  170 (198)
                      .+...    .........+++..++...++    .+++++||++|.|+.+++
T Consensus       157 ~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          157 TEPPY----DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             SSSTT----CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             CCccc----cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence            76210    000001234566777777663    479999999999997544

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.86  E-value=1.4e-21  Score=153.35  Aligned_cols=167  Identities=19%  Similarity=0.169  Sum_probs=114.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhC--------CCCCC--CCC-----ccccce-eEEEEECCeEEEEEEEeCCCccC
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--------TFPTD--YVP-----TVFDNF-SANVVVDGSTVNLGLWDTAGQED   66 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~--------~~~~~--~~~-----t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~   66 (198)
                      ....++|+++|++++|||||+++|...        .+...  ...     +.+..+ .....+......+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            446789999999999999999999873        11100  000     011111 12222333335677999999999


Q ss_pred             cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHH
Q 029144           67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEE  145 (198)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (198)
                      |...+...++.+|++|+|+|++++...+.  .+++..+...  ++| +++++||+|+.++..       ......++...
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~-------~~~~~~~~~~~  156 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPE-------LLDLVEMEVRD  156 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHH-------HHHHHHHHHHH
Confidence            98888888999999999999998765443  3555555554  788 889999999974221       00012345566


Q ss_pred             HHHHcCC----CEEEEeccCCCCC------------------HHHHHHHHHHHHcCC
Q 029144          146 LRKLIGA----PVYIECSSKTQQN------------------VKAVFDAAIKVVLQP  180 (198)
Q Consensus       146 ~~~~~~~----~~~~~~Sa~~~~~------------------i~~~~~~i~~~~~~~  180 (198)
                      +...+++    .+++++||++|.|                  +.++++.+.+.+..+
T Consensus       157 ~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p  213 (405)
T 2c78_A          157 LLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTP  213 (405)
T ss_dssp             HHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCC
Confidence            6666653    4799999999987                  888888888877544

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.86  E-value=3.6e-21  Score=152.28  Aligned_cols=159  Identities=16%  Similarity=0.101  Sum_probs=102.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCC--CCCCC------------------------------CCccccceeEEEEECC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDY------------------------------VPTVFDNFSANVVVDG   51 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~   51 (198)
                      ...++|+++|++++|||||+++|+...  +....                              ...+.+.....+..++
T Consensus        15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~   94 (439)
T 3j2k_7           15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK   94 (439)
T ss_pred             CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence            357899999999999999999996431  11110                              0011111112222333


Q ss_pred             eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhH------HHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 029144           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASY------ENVAKKWIPELRHYAPGVP-IILVGTKLDLRD  124 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~  124 (198)
                        ..+.||||||+++|...+...++.+|++++|+|++++...      ... .+.+..+...  +.| +++|+||+|+..
T Consensus        95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt-~e~l~~~~~~--~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT-REHAMLAKTA--GVKHLIVLINKMDDPT  169 (439)
T ss_pred             --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH-HHHHHHHHHc--CCCeEEEEeecCCCcc
Confidence              5788999999999999888899999999999999886431      111 2223333333  677 999999999964


Q ss_pred             ccccccCCCCCccccHHHHHHHHHHcCC-----CEEEEeccCCCCCHHHHHH
Q 029144          125 DKQFLADHPGAVPITTAQGEELRKLIGA-----PVYIECSSKTQQNVKAVFD  171 (198)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  171 (198)
                      ...    .........++...+....++     .+++++||++|.|+.++++
T Consensus       170 ~~~----~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNW----SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cch----HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            210    000001223444555555553     2699999999999999654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.86  E-value=7.6e-21  Score=154.80  Aligned_cols=168  Identities=16%  Similarity=0.143  Sum_probs=106.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCC----CCccccceeEEE-------------EECCeEEEEEEEeCCCccC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VPTVFDNFSANV-------------VVDGSTVNLGLWDTAGQED   66 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~----~~t~~~~~~~~~-------------~~~~~~~~l~i~D~~G~~~   66 (198)
                      .+..+|+++|++++|||||++++++..+....    ..+.+..+....             ..+.....++||||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            46789999999999999999999876443221    112211111000             0000112478999999999


Q ss_pred             cccccccccCCCcEEEEEEECCC---hhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC-------CCCCc
Q 029144           67 YNRLRPLSYRGADVFLLAFSLIS---KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD-------HPGAV  136 (198)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-------~~~~~  136 (198)
                      |..++...++.+|++|+|+|+++   +.+++..     ..+...  ++|+++++||+|+.+.......       .....
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-----~~l~~~--~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEAL-----NILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-----HHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-----HHHHHc--CCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99999999999999999999999   5555433     233333  7999999999999753110000       00000


Q ss_pred             ccc---HH---HHHHHHHHcC--------------CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          137 PIT---TA---QGEELRKLIG--------------APVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       137 ~~~---~~---~~~~~~~~~~--------------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      .+.   .+   +......+.+              ..+++++||++|.|++++++++...+.
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            000   00   1111111111              227899999999999999999998764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.86  E-value=9.2e-22  Score=139.38  Aligned_cols=114  Identities=13%  Similarity=0.183  Sum_probs=84.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCC---CCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCC---
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPT---DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRG---   77 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~---   77 (198)
                      .+.++|+++|.+|+|||||++++.+..+..   .+.++....+        ..+.+.+||+||++.+...+..++.+   
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC--------CCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            457899999999999999999999887543   1222221111        23567799999999998888777765   


Q ss_pred             -CcEEEEEEECC-ChhhHHHHHHHHHHHHh-h----hCCCCCEEEEeecCCccccc
Q 029144           78 -ADVFLLAFSLI-SKASYENVAKKWIPELR-H----YAPGVPIILVGTKLDLRDDK  126 (198)
Q Consensus        78 -~~~~i~v~d~~-~~~s~~~~~~~~~~~~~-~----~~~~~p~iiv~nK~Dl~~~~  126 (198)
                       +|++++|+|++ +..++... ..|+..+. .    ..++.|+++|+||+|+.+..
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             cCCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence             89999999999 89898887 44444333 2    12589999999999997653

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.85  E-value=1.8e-20  Score=144.70  Aligned_cols=161  Identities=20%  Similarity=0.150  Sum_probs=107.7

Q ss_pred             eE-EEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccC---------ccccccccc
Q 029144            7 IK-CVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED---------YNRLRPLSY   75 (198)
Q Consensus         7 ~~-i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~~   75 (198)
                      ++ |+++|.+|+|||||++++.+.... .++..++.+.....+.+++  ..+.+|||+|.-.         |.+.+. .+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~  255 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA  255 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence            44 999999999999999999987642 2333444555666777877  4567999999622         222222 46


Q ss_pred             CCCcEEEEEEECCChh--hHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc-C
Q 029144           76 RGADVFLLAFSLISKA--SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI-G  151 (198)
Q Consensus        76 ~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  151 (198)
                      ..+|++++|+|++++.  ..... ..|...+.... .+.|+++|+||+|+.+...         ....+.+..++... .
T Consensus       256 ~~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~---------~~~~~~~~~l~~~l~~  325 (364)
T 2qtf_A          256 KYSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDL---------YKKLDLVEKLSKELYS  325 (364)
T ss_dssp             GGSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCH---------HHHHHHHHHHHHHHCS
T ss_pred             HhCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchH---------HHHHHHHHHHHHHhcC
Confidence            7899999999999876  44443 55555555543 5789999999999965321         01112333344444 2


Q ss_pred             -CCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          152 -APVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       152 -~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                       .++++++||+++.|++++++.|.+.+...
T Consensus       326 ~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          326 PIFDVIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             CEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence             22688999999999999999999877543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.85  E-value=4.1e-21  Score=153.82  Aligned_cols=156  Identities=14%  Similarity=0.076  Sum_probs=97.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCC--CCCC------------------------------CCCccccceeEEEEECC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD------------------------------YVPTVFDNFSANVVVDG   51 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~   51 (198)
                      ...+||+++|.+++|||||+++|+...  +...                              ....+.+...  ..+..
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~  108 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICT--SHFST  108 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCE--EEEEC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeee--EEEec
Confidence            356899999999999999999997541  1100                              0011111111  12222


Q ss_pred             eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHH-----HHHHHHHHHhhhCCCCCEEEEeecCCccccc
Q 029144           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN-----VAKKWIPELRHYAPGVPIILVGTKLDLRDDK  126 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  126 (198)
                      ....+.||||||+++|...+...++++|++|+|+|++++.++..     ...+.+..+... ...|+++|+||+|+.+..
T Consensus       109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTC
T ss_pred             CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccch
Confidence            33678899999999999998899999999999999998754321     112222333322 235799999999997632


Q ss_pred             ccccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHH
Q 029144          127 QFLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKA  168 (198)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  168 (198)
                      .      .......++...+....+.    .+++++||++|.|+++
T Consensus       188 ~------~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 Q------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             H------HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             H------HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            1      0000112233444444433    3789999999999875

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.85  E-value=5.2e-21  Score=149.78  Aligned_cols=166  Identities=19%  Similarity=0.146  Sum_probs=112.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC-------CCCC--CCC-----ccccce-eEEEEECCeEEEEEEEeCCCccCccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT-------FPTD--YVP-----TVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR   69 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~-------~~~~--~~~-----t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~   69 (198)
                      ..++|+++|+.++|||||+++|....       +...  ...     ..+..+ .....+......+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998631       1000  000     000001 01122322335677999999999988


Q ss_pred             ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHHH
Q 029144           70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK  148 (198)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (198)
                      .+...++.+|++|+|+|++++...+..  +++..+...  ++| +++++||+|+.++..       ......++..+++.
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~~--~vp~iivviNK~Dl~~~~~-------~~~~~~~~~~~~l~  150 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQI--GVEHVVVYVNKADAVQDSE-------MVELVELEIRELLT  150 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCSCHH-------HHHHHHHHHHHHHH
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCCeEEEEEECcccCCCHH-------HHHHHHHHHHHHHH
Confidence            888889999999999999986554433  333444444  788 689999999975221       00022345667777


Q ss_pred             HcCC----CEEEEeccCCCCC----------HHHHHHHHHHHHcCCC
Q 029144          149 LIGA----PVYIECSSKTQQN----------VKAVFDAAIKVVLQPP  181 (198)
Q Consensus       149 ~~~~----~~~~~~Sa~~~~~----------i~~~~~~i~~~~~~~~  181 (198)
                      .+++    .+++++||++|.|          +.++++.+.+.+..+.
T Consensus       151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~  197 (397)
T 1d2e_A          151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT  197 (397)
T ss_dssp             HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred             HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence            7663    3799999999764          8999999988776543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.85  E-value=1.2e-22  Score=161.96  Aligned_cols=161  Identities=16%  Similarity=0.196  Sum_probs=106.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ++..+|+++|+.++|||||++++....+.....+... +.....+.+++  ..+.||||||++.|..++...+..+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            5778999999999999999999987544332222111 11111222344  35679999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC-CCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG-APVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~  161 (198)
                      +|+|++++...+..  +.+..+...  +.|+++++||+|+........... ....     ..++..++ ..+++++||+
T Consensus        80 LVVda~~g~~~qT~--e~l~~~~~~--~vPiIVviNKiDl~~~~~~~v~~~-l~~~-----~~~~~~~~~~~~~v~vSAk  149 (501)
T 1zo1_I           80 LVVAADDGVMPQTI--EAIQHAKAA--QVPVVVAVNKIDKPEADPDRVKNE-LSQY-----GILPEEWGGESQFVHVSAK  149 (501)
T ss_dssp             EEEETTTBSCTTTH--HHHHHHHHT--TCCEEEEEECSSSSTTCCCCTTCC-CCCC-----CCCTTCCSSSCEEEECCTT
T ss_pred             EEeecccCccHHHH--HHHHHHHhc--CceEEEEEEeccccccCHHHHHHH-HHHh-----hhhHHHhCCCccEEEEeee
Confidence            99999884332222  222233333  789999999999975321000000 0000     00111222 2379999999


Q ss_pred             CCCCHHHHHHHHHHH
Q 029144          162 TQQNVKAVFDAAIKV  176 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~  176 (198)
                      +|.|++++|+++...
T Consensus       150 tG~gI~eLle~I~~~  164 (501)
T 1zo1_I          150 AGTGIDELLDAILLQ  164 (501)
T ss_dssp             TCTTCTTHHHHTTTT
T ss_pred             eccCcchhhhhhhhh
Confidence            999999999998764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=6.3e-21  Score=150.90  Aligned_cols=156  Identities=16%  Similarity=0.169  Sum_probs=102.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCC--CCCC----------CCCccccce-------------------e-EEEEECC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTD----------YVPTVFDNF-------------------S-ANVVVDG   51 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~----------~~~t~~~~~-------------------~-~~~~~~~   51 (198)
                      ...++|+++|+.++|||||+++|+...  +...          ..++++..+                   . ....+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            346899999999999999999998653  1111          112211111                   0 0111222


Q ss_pred             eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC-CEEEEeecCCccccccccc
Q 029144           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGV-PIILVGTKLDLRDDKQFLA  130 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~~~~~  130 (198)
                      ....+.+|||||++.|...+...+..+|++|+|+|++++...+.  .+++..+...  +. |+++|+||+|+.+...   
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt--~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~---  174 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT--RRHSYIASLL--GIKHIVVAINKMDLNGFDE---  174 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH--HHHHHHHHHT--TCCEEEEEEECTTTTTSCH---
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEEcCcCCcccH---
Confidence            23567899999999998888888999999999999998754433  2344444433  44 6999999999975211   


Q ss_pred             CCCCCccccHHHHHHHHHHcC--C--CEEEEeccCCCCCHHHH
Q 029144          131 DHPGAVPITTAQGEELRKLIG--A--PVYIECSSKTQQNVKAV  169 (198)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~Sa~~~~~i~~~  169 (198)
                         .......++...++..++  .  .+++++||++|.|++++
T Consensus       175 ---~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          175 ---RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             ---HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             ---HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence               000012345666677776  1  36999999999999874

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.85  E-value=2.2e-21  Score=144.90  Aligned_cols=162  Identities=14%  Similarity=0.091  Sum_probs=89.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCC-CCCC-------CCccccc-eeEEEEECCeEEEEEEEeCCCccCc------
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTF-PTDY-------VPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDY------   67 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~-~~~~-------~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~------   67 (198)
                      ....++|+++|.+|+|||||+++++.... ...+       .+|.... ....+..++..+.+.+|||||....      
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~   84 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC   84 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence            34579999999999999999999876543 3332       3333222 2233334555578999999997432      


Q ss_pred             -cccc-------cc-----------c--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccc
Q 029144           68 -NRLR-------PL-----------S--YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK  126 (198)
Q Consensus        68 -~~~~-------~~-----------~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  126 (198)
                       ....       ..           .  -..+|+++++++.++.... .....++..+..   +.|+++|+||+|+....
T Consensus        85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~-~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLK-PLDIEFMKRLHE---KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCC-HHHHHHHHHHTT---TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCC-HHHHHHHHHHhc---cCCEEEEEeccCCCCHH
Confidence             1111       11           1  1237799999977652211 221345555554   79999999999996533


Q ss_pred             ccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      .        .....+.+.+.....+. +++++||.+++|+++++.+|.+.+
T Consensus       161 e--------~~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          161 E--------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             H--------HHHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTC
T ss_pred             H--------HHHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCC
Confidence            2        00112334455556677 688999999999999999998865

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=7.6e-22  Score=157.10  Aligned_cols=153  Identities=16%  Similarity=0.140  Sum_probs=101.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCC--------ccCccccccccc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAG--------QEDYNRLRPLSY   75 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G--------~~~~~~~~~~~~   75 (198)
                      ..+|+++|.+|+|||||++++.+..+.  ..+.+++.+.........+  ..+.+|||||        ++.+...+..++
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  100 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM  100 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS--SCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC--ceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence            568999999999999999999986542  2333333333333333344  4677999999        556666777788


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144           76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY  155 (198)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (198)
                      +++|++++|+|..++.+..+  .++...+...  +.|+++|+||+|+.+...              ...++ ...+...+
T Consensus       101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~~~--~~pvilV~NK~D~~~~~~--------------~~~e~-~~lg~~~~  161 (456)
T 4dcu_A          101 DEADVIIFMVNGREGVTAAD--EEVAKILYRT--KKPVVLAVNKLDNTEMRA--------------NIYDF-YSLGFGEP  161 (456)
T ss_dssp             HHCSEEEEEEESSSCSCHHH--HHHHHHHTTC--CSCEEEEEECC-----------------------CCS-GGGSSSSE
T ss_pred             hhCCEEEEEEeCCCCCChHH--HHHHHHHHHc--CCCEEEEEECccchhhhh--------------hHHHH-HHcCCCce
Confidence            89999999999887554443  3455556554  899999999999864321              11111 12334356


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcC
Q 029144          156 IECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +++||++|.|+.++++.+.+.+..
T Consensus       162 ~~iSA~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          162 YPISGTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             EECCTTTCTTHHHHHHHHHTTGGG
T ss_pred             EEeecccccchHHHHHHHHhhccc
Confidence            899999999999999999987753

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.84  E-value=5.8e-21  Score=147.83  Aligned_cols=148  Identities=14%  Similarity=0.040  Sum_probs=105.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   87 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (198)
                      +|+++|++++|||||+++|...       ..+.+.....+..++  ..+.+|||||+++|.......++.+|++++|+| 
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~-------giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK-------GTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE-------EEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhC-------CEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence            8999999999999999999811       111111112222333  457899999999998777778899999999999 


Q ss_pred             CChhhHHHHHHHHHHHHhhhCCCCCE-EEEee-cCCcccccccccCCCCCcccc--HHHHHHHHHHcC--CCEEEE--ec
Q 029144           88 ISKASYENVAKKWIPELRHYAPGVPI-ILVGT-KLDLRDDKQFLADHPGAVPIT--TAQGEELRKLIG--APVYIE--CS  159 (198)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~--~S  159 (198)
                      +... .... .+++..+...  +.|. ++++| |+|+ +...          +.  .++++++....+  ..++++  +|
T Consensus        93 ~~g~-~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~----------~~~~~~~i~~~l~~~~~~~~~ii~~~~S  157 (370)
T 2elf_A           93 PQGL-DAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHA----------IDELKAKLKVITSGTVLQDWECISLNTN  157 (370)
T ss_dssp             TTCC-CHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHH----------HHHHHHHHHHHTTTSTTTTCEEEECCCC
T ss_pred             CCCC-cHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHH----------HHHHHHHHHHHHHhcCCCceEEEecccc
Confidence            5443 3333 4555555555  6787 88999 9999 5321          22  245555555543  237999  99


Q ss_pred             cCC---CCCHHHHHHHHHHHHcCC
Q 029144          160 SKT---QQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       160 a~~---~~~i~~~~~~i~~~~~~~  180 (198)
                      |++   +.|++++++.|.+.+...
T Consensus       158 A~~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          158 KSAKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             TTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred             cccCcCCCCHHHHHHHHHhhcccc
Confidence            999   999999999999887543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.84  E-value=7e-22  Score=152.71  Aligned_cols=160  Identities=13%  Similarity=0.141  Sum_probs=85.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC-CCCCCC--------Cccccc-eeEEEEECCeEEEEEEEeCCCc-------cCc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT-FPTDYV--------PTVFDN-FSANVVVDGSTVNLGLWDTAGQ-------EDY   67 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~-~~~~~~--------~t~~~~-~~~~~~~~~~~~~l~i~D~~G~-------~~~   67 (198)
                      ..++|+++|++|+|||||+++++... +...+.        +|.... .......++..+.+.+|||||+       +.|
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            46899999999999999999977543 322221        222211 1222233556678999999998       666


Q ss_pred             ccccc-------cccCC-----------CcEEEEEEECCC-hhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccc
Q 029144           68 NRLRP-------LSYRG-----------ADVFLLAFSLIS-KASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  128 (198)
Q Consensus        68 ~~~~~-------~~~~~-----------~~~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~  128 (198)
                      ..++.       .++++           .++.+++|++++ ..++......|+..+.   .+.|+++|+||+|+..... 
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~---~~~piIlV~NK~Dl~~~~e-  191 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH---NKVNIVPVIAKADTLTLKE-  191 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC---S-SCEEEEEECCSSSCHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc---cCCCEEEEEECCCCCCHHH-
Confidence            65554       33322           222234444443 4445554334555443   4799999999999976543 


Q ss_pred             ccCCCCCccccH--HHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          129 LADHPGAVPITT--AQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       129 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                               +..  +++..++...++ +++++||+++.+ ++.|..+.+.+..
T Consensus       192 ---------v~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          192 ---------RERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             ---------HHHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHh
Confidence                     333  466677777787 799999999998 7777777776643

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.7e-20  Score=152.33  Aligned_cols=156  Identities=14%  Similarity=0.088  Sum_probs=100.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCC--------------------------------CCccccceeEEEEECC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------------------------------VPTVFDNFSANVVVDG   51 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~--------------------------------~~t~~~~~~~~~~~~~   51 (198)
                      ...++|+++|++++|||||+++|+.....-..                                ...+.+.....+...+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            45789999999999999999999865221100                                0111111122233333


Q ss_pred             eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhH------HHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASY------ENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                        ..+.||||||++.|...+...++.+|++|+|+|++++...      ... .+.+..+... ...|+++|+||+|+.+.
T Consensus       245 --~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~l-gi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          245 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASSL-GIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             --CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHTT-TCCEEEEEEECTTTTTT
T ss_pred             --ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHHc-CCCeEEEEEecccccch
Confidence              5678999999999999988999999999999999875310      111 2222233322 23459999999999763


Q ss_pred             cccccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHHH
Q 029144          126 KQFLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKAV  169 (198)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~  169 (198)
                      ..      .......++...+....++    .+++++||++|.|+.++
T Consensus       321 ~~------~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQ------QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CH------HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hH------HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            21      0000123344445555443    37999999999999876

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.83  E-value=1.5e-20  Score=149.54  Aligned_cols=158  Identities=14%  Similarity=0.087  Sum_probs=102.6

Q ss_pred             CC-CCceeEEEEECCCCCCHHHHHHHHhhC--CCCCC------------------------------CCCccccceeEEE
Q 029144            1 MS-ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANV   47 (198)
Q Consensus         1 m~-~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~------------------------------~~~t~~~~~~~~~   47 (198)
                      |. +...++|+++|++++|||||+++|+..  .+...                              ....+.+.....+
T Consensus         1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~   80 (458)
T 1f60_A            1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF   80 (458)
T ss_dssp             -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred             CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence            55 345799999999999999999999864  22110                              0001111111222


Q ss_pred             EECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhh---HH---HHHHHHHHHHhhhCCCCC-EEEEeecC
Q 029144           48 VVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKAS---YE---NVAKKWIPELRHYAPGVP-IILVGTKL  120 (198)
Q Consensus        48 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-~iiv~nK~  120 (198)
                      ..++  ..+.+|||||+++|...+...++.+|++|+|+|++++..   |+   .. .+.+..+...  +.| +++|+||+
T Consensus        81 ~~~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt-~~~~~~~~~~--~v~~iivviNK~  155 (458)
T 1f60_A           81 ETPK--YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT-REHALLAFTL--GVRQLIVAVNKM  155 (458)
T ss_dssp             ECSS--EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH-HHHHHHHHHT--TCCEEEEEEECG
T ss_pred             ecCC--ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhH-HHHHHHHHHc--CCCeEEEEEEcc
Confidence            2333  678899999999999888889999999999999987642   21   22 2222333333  565 89999999


Q ss_pred             CcccccccccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHHH
Q 029144          121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKAV  169 (198)
Q Consensus       121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~~  169 (198)
                      |+.+...      .......++...++...++    .+++++||++|.|+.++
T Consensus       156 Dl~~~~~------~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          156 DSVKWDE------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGGTTCH------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccccCCH------HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            9973110      0001233455666666663    37999999999998743

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.83  E-value=3.4e-21  Score=153.52  Aligned_cols=159  Identities=18%  Similarity=0.149  Sum_probs=90.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhh--CCCCC------------------------C------CCCccccceeEEEEEC
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPT------------------------D------YVPTVFDNFSANVVVD   50 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~--~~~~~------------------------~------~~~t~~~~~~~~~~~~   50 (198)
                      ....++|+++|+.++|||||+++|+.  +.+..                        +      ....+...-...+..+
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            44578999999999999999999974  22210                        0      0000100001122334


Q ss_pred             CeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChh---hHH---HHHHHHHHHHhhhCCCCC-EEEEeecCCcc
Q 029144           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA---SYE---NVAKKWIPELRHYAPGVP-IILVGTKLDLR  123 (198)
Q Consensus        51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~  123 (198)
                      +  ..+.||||||+++|...+...++.+|++|+|+|++++.   +|+   .. .+.+..+...  ++| +++++||+|+.
T Consensus       120 ~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt-~e~l~~~~~~--~vp~iivviNK~Dl~  194 (467)
T 1r5b_A          120 H--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQT-REHAVLARTQ--GINHLVVVINKMDEP  194 (467)
T ss_dssp             S--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCH-HHHHHHHHHT--TCSSEEEEEECTTST
T ss_pred             C--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcH-HHHHHHHHHc--CCCEEEEEEECccCC
Confidence            4  56789999999999998888999999999999999863   221   11 1222222333  677 99999999996


Q ss_pred             cccccccCCCCCccccHHHHHHHHHHc-CC-----CEEEEeccCCCCCHHHHH
Q 029144          124 DDKQFLADHPGAVPITTAQGEELRKLI-GA-----PVYIECSSKTQQNVKAVF  170 (198)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i~~~~  170 (198)
                      ....    .........++...++... ++     .+++++||++|.|+.+++
T Consensus       195 ~~~~----~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          195 SVQW----SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             TCSS----CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             Cccc----cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            4210    0000012334556666655 43     269999999999998755

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.83  E-value=5.3e-21  Score=144.41  Aligned_cols=158  Identities=20%  Similarity=0.160  Sum_probs=100.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCC------CCCc-----------------------cccc-------------
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD------YVPT-----------------------VFDN-------------   42 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~------~~~t-----------------------~~~~-------------   42 (198)
                      ...+|+++|.+|+|||||++++.+..+...      ..|+                       +.+.             
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            467999999999999999999998876321      1121                       1100             


Q ss_pred             ----------eeEEEEECCeEEEEEEEeCCCccC-------------cccccccccCCCcEEE-EEEECCChhhHHHHHH
Q 029144           43 ----------FSANVVVDGSTVNLGLWDTAGQED-------------YNRLRPLSYRGADVFL-LAFSLISKASYENVAK   98 (198)
Q Consensus        43 ----------~~~~~~~~~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~~   98 (198)
                                ....+... ....+.+|||||...             +......+++.++.++ +|+|+++..+..+. .
T Consensus       105 g~~~gi~~~~~~~~~~~~-~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~  182 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSP-HVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L  182 (299)
T ss_dssp             SSTTCCCSCCEEEEEEET-TCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-H
T ss_pred             ccCCCccccceEEEEeCC-CCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-H
Confidence                      00000011 025678999999642             3344556777887666 79999876554443 3


Q ss_pred             HHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHH--HHHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144           99 KWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEEL--RKLIGAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus        99 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      .+...+...  +.|+++|+||+|+.+...          ...+.....  ....++.+++++||++|.|++++++.+.+.
T Consensus       183 ~~~~~~~~~--~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          183 KIAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHHCTT--CSSEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHhCCC--CCeEEEEEEccccCCCCc----------hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            455555543  799999999999976432          112222110  011133367889999999999999998873

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.82  E-value=6.5e-20  Score=156.31  Aligned_cols=166  Identities=18%  Similarity=0.159  Sum_probs=112.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCC-------CCC--CC-----CCccccce-eEEEEECCeEEEEEEEeCCCccCcc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNT-------FPT--DY-----VPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN   68 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~-------~~~--~~-----~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~   68 (198)
                      ...++|+++|+.++|||||+++|....       +..  ..     ..+.+..+ ...+.++.....+.+|||||+++|.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            356899999999999999999998631       000  00     00111111 0112233333667899999999998


Q ss_pred             cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHHHH
Q 029144           69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR  147 (198)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  147 (198)
                      ..+...++.+|++|+|+|++++...+.  .+++..+...  ++| +++++||+|+.++..       ......+++..+.
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~QT--rEhL~ll~~l--gIP~IIVVINKiDLv~d~e-------~le~i~eEi~elL  442 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMPQT--REHILLGRQV--GVPYIIVFLNKCDMVDDEE-------LLELVEMEVRELL  442 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCTTH--HHHHHHHHHH--TCSCEEEEEECCTTCCCHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcHHH--HHHHHHHHHc--CCCeEEEEEeecccccchh-------hHHHHHHHHHHHH
Confidence            888888999999999999998754433  2444455554  788 789999999975321       0001334566677


Q ss_pred             HHcCC----CEEEEeccCCC--------CCHHHHHHHHHHHHcCC
Q 029144          148 KLIGA----PVYIECSSKTQ--------QNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       148 ~~~~~----~~~~~~Sa~~~--------~~i~~~~~~i~~~~~~~  180 (198)
                      ...++    .+++++||++|        .|+.++++.|.+.+..+
T Consensus       443 k~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P  487 (1289)
T 3avx_A          443 SQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP  487 (1289)
T ss_dssp             HHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence            76653    37999999999        46899999998877543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.82  E-value=1.4e-19  Score=129.76  Aligned_cols=162  Identities=13%  Similarity=-0.016  Sum_probs=100.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCc----------cccc
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDY----------NRLR   71 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~----------~~~~   71 (198)
                      .....+|+++|++|+|||||++++.+..+...+.++.+... ...+.+++   .+.+||+||....          ....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            44668999999999999999999987764333344443322 22233333   3569999997431          2111


Q ss_pred             cccc---CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH
Q 029144           72 PLSY---RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK  148 (198)
Q Consensus        72 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (198)
                      ..++   ..++++++++|++++.+....  .+...+...  +.|+++++||+|+.+...        +....+.+..++.
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~--~~~~~~v~nK~D~~s~~~--------~~~~~~~~~~~~~  167 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVDS--NIAVLVLLTKADKLASGA--------RKAQLNMVREAVL  167 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHG
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHHc--CCCeEEEEecccCCCchh--------HHHHHHHHHHHHH
Confidence            2223   468899999999887655332  222333333  789999999999865321        0112345556665


Q ss_pred             HcC-CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          149 LIG-APVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       149 ~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ..+ ...++++||+++.|++++++.|.+.+..
T Consensus       168 ~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          168 AFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             GGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             hcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence            554 2367899999999999999999988754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.81  E-value=1.8e-19  Score=133.74  Aligned_cols=118  Identities=16%  Similarity=0.203  Sum_probs=85.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccC------
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR------   76 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~------   76 (198)
                      +.++|+++|..|+|||||++++++...  ...+.+++.......+..++  ..+.+|||||+..+......+++      
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            679999999999999999999998764  34444555444555556666  46779999999887655544433      


Q ss_pred             ---CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC---CCCEEEEeecCCcccc
Q 029144           77 ---GADVFLLAFSLISKASYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDD  125 (198)
Q Consensus        77 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~  125 (198)
                         ++|++++|++++... +......|+..+.....   ..|+++|+||+|+.+.
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence               789999999987654 33332466666665432   2499999999999643

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.81  E-value=3.7e-21  Score=156.97  Aligned_cols=165  Identities=17%  Similarity=0.178  Sum_probs=91.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC--CCCCC------------------------------CCCccccceeEEEEECC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------------------------------YVPTVFDNFSANVVVDG   51 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~   51 (198)
                      ...++|+++|++++|||||+++|+..  .+...                              ...++.+.....+..  
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~--  252 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES--  252 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe--
Confidence            35789999999999999999999642  11100                              000111111111222  


Q ss_pred             eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChh---hH--HHHHHHHHHHHhhhCCCCC-EEEEeecCCcccc
Q 029144           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA---SY--ENVAKKWIPELRHYAPGVP-IILVGTKLDLRDD  125 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~  125 (198)
                      ....+.||||||++.|...+...++.+|++|+|+|++++.   .+  .....+.+..+...  ++| +++|+||+|+.+.
T Consensus       253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~  330 (592)
T 3mca_A          253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSW  330 (592)
T ss_dssp             ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTT
T ss_pred             CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEeccccccc
Confidence            2367789999999999999989999999999999998642   11  11112222333333  565 9999999999752


Q ss_pred             cccccCCCCCccccHHHHHHHH-HHcCCC----EEEEeccCCCCCHH--------------HHHHHHHHHHc
Q 029144          126 KQFLADHPGAVPITTAQGEELR-KLIGAP----VYIECSSKTQQNVK--------------AVFDAAIKVVL  178 (198)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~Sa~~~~~i~--------------~~~~~i~~~~~  178 (198)
                      ..      ........+...+. ...++.    +++++||++|.|+.              ++++.|.+.+.
T Consensus       331 ~~------~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          331 SE------DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             CH------HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             cH------HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence            11      00001223344444 444542    69999999999998              67777766443

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.80  E-value=2.8e-18  Score=138.34  Aligned_cols=115  Identities=17%  Similarity=0.123  Sum_probs=80.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC--CCCCC--------CCCcc----------c---cceeEEEEECCeEEEEEEEeC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPTD--------YVPTV----------F---DNFSANVVVDGSTVNLGLWDT   61 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~~--------~~~t~----------~---~~~~~~~~~~~~~~~l~i~D~   61 (198)
                      +..+|+++|++|+|||||+++++..  .+...        ...+.          +   ......+.+.+  +.+.+|||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~--~~i~liDT   89 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD--CLVNLLDT   89 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT--EEEEEECC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC--eEEEEEEC
Confidence            5789999999999999999999863  11000        00000          0   00112233344  67889999


Q ss_pred             CCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      ||+..|...+..+++.+|++|+|+|++++.....  ..+...+...  ++|+++++||+|+...
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~~--~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRLR--DTPILTFMNKLDRDIR  149 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTTT--TCCEEEEEECTTSCCS
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHHc--CCCEEEEEcCcCCccc
Confidence            9999999888889999999999999988654332  3444444443  8999999999999754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.80  E-value=5.1e-19  Score=146.35  Aligned_cols=116  Identities=20%  Similarity=0.102  Sum_probs=81.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc----------------c-cceeEEEEECCeEEEEEEEeCCCccC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV----------------F-DNFSANVVVDGSTVNLGLWDTAGQED   66 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~----------------~-~~~~~~~~~~~~~~~l~i~D~~G~~~   66 (198)
                      ++..+|+++|+.|+|||||++++...........+.                + ........+....+.+++|||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            456799999999999999999998433211111100                0 11111222222236788999999999


Q ss_pred             cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144           67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (198)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  123 (198)
                      |...+...++.+|++++|+|+++.......  .++..+...  ++|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~~--~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHHc--cCCEEEEecCCchh
Confidence            988888899999999999999877554443  444555544  79999999999997

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.80  E-value=4.9e-20  Score=139.20  Aligned_cols=134  Identities=15%  Similarity=0.125  Sum_probs=108.6

Q ss_pred             HHHHHHhhCCCC-CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChh-hHHHHHH
Q 029144           21 CMLISYTSNTFP-TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKA-SYENVAK   98 (198)
Q Consensus        21 tli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~   98 (198)
                      +|+.++..+.+. +.+.||.++.+...+..++   .+++||+  +++|.++++.+++++|++|+|||++++. ++..+ .
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l-~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII-D  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-H
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-H
Confidence            678888888888 7889999877664432232   5779999  8999999999999999999999999997 67666 7


Q ss_pred             HHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC--CCEEEEeccCCCCCHHHHHHHHHH
Q 029144           99 KWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG--APVYIECSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus        99 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~  175 (198)
                      .|+..+...  ++|+++|+||+|+.+...          +  +++.+++..++  . +++++||++|.|++++|..+..
T Consensus       106 ~~l~~~~~~--~~piilv~NK~DL~~~~~----------v--~~~~~~~~~~~~~~-~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          106 KFLVLAEKN--ELETVMVINKMDLYDEDD----------L--RKVRELEEIYSGLY-PIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHHHT--TCEEEEEECCGGGCCHHH----------H--HHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHHHC--CCCEEEEEeHHHcCCchh----------H--HHHHHHHHHHhhhC-cEEEEECCCCcCHHHHHHHhcC
Confidence            888777664  899999999999976432          2  45666676666  5 7999999999999999987754

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.79  E-value=7.8e-19  Score=145.81  Aligned_cols=170  Identities=12%  Similarity=0.141  Sum_probs=107.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccc--------cceeEEEEE--------------------------
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVF--------DNFSANVVV--------------------------   49 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~--------~~~~~~~~~--------------------------   49 (198)
                      ..++|+|+|.+|+|||||+|++++..+.. ...|++.        ........+                          
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            57899999999999999999999876422 2223331        000001111                          


Q ss_pred             --------------------CCeE--EEEEEEeCCCccC---cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHH
Q 029144           50 --------------------DGST--VNLGLWDTAGQED---YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPEL  104 (198)
Q Consensus        50 --------------------~~~~--~~l~i~D~~G~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  104 (198)
                                          +...  ..+.+|||||...   ....+..+++++|++++|+|++++.+..+. ..|...+
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l  226 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI  226 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence                                0000  2478999999654   334455677899999999999988877766 5555555


Q ss_pred             hhhCCCCCEEEEeecCCcccccccccCCCCCccc--cHHHHHH-----HHHHcC-------CCEEEEeccC---------
Q 029144          105 RHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPI--TTAQGEE-----LRKLIG-------APVYIECSSK---------  161 (198)
Q Consensus       105 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~-------~~~~~~~Sa~---------  161 (198)
                      ...  +.|+++|+||+|+......  +.......  ..+....     +....+       ..+++++||+         
T Consensus       227 ~~~--~~~iiiVlNK~Dl~~~~~~--~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~  302 (695)
T 2j69_A          227 KGR--GLTVFFLVNAWDQVRESLI--DPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKN  302 (695)
T ss_dssp             TTS--CCCEEEEEECGGGGGGGCS--STTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHC
T ss_pred             Hhh--CCCEEEEEECccccccccc--ChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccC
Confidence            544  7899999999999754310  00000000  0001111     111111       1258999999         


Q ss_pred             -----CCCCHHHHHHHHHHHHcC
Q 029144          162 -----TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 -----~~~~i~~~~~~i~~~~~~  179 (198)
                           ++.|+++++..+.+.+..
T Consensus       303 ~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          303 PQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             TTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             chhhhhccCHHHHHHHHHHHHHH
Confidence                 999999999999987754

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.78  E-value=5.2e-18  Score=126.35  Aligned_cols=119  Identities=17%  Similarity=0.170  Sum_probs=82.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccccc---------
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPL---------   73 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~---------   73 (198)
                      ..++|+++|.+|+|||||++++++..+.  ..+.+++..........++  ..+.+|||||+..+......         
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            5799999999999999999999987652  3333444333333344444  56789999999776543321         


Q ss_pred             ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCC-C--CCEEEEeecCCccccc
Q 029144           74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-G--VPIILVGTKLDLRDDK  126 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~~~  126 (198)
                      ..+.+|++++|+|++.. ++......|+..+..... +  .|+++|+||+|+.+..
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            13468999999998653 343333466666665432 2  6999999999997543

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=5.3e-18  Score=140.73  Aligned_cols=115  Identities=17%  Similarity=0.158  Sum_probs=83.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC--CCC------C------------CCCCccccceeEEEEECCeEEEEEEEeCCC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFP------T------------DYVPTVFDNFSANVVVDGSTVNLGLWDTAG   63 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~------~------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G   63 (198)
                      .+..+|+++|+.|+|||||+++++..  .+.      .            ....|.. .....+.+.+  +.+++|||||
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~-~~~~~~~~~~--~~i~liDTPG   86 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITIT-AAVTTCFWKD--HRINIIDTPG   86 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC-----------------------------CCEEEEEETT--EEEEEECCCS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccc-cceEEEEECC--eEEEEEECcC
Confidence            46789999999999999999999842  111      0            0011111 1122233444  6788999999


Q ss_pred             ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      +..|...+...++.+|++|+|+|++++.+.... ..|. .+...  +.|+++|+||+|+...
T Consensus        87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~-~~~~~--~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWR-QAEKY--KVPRIAFANKMDKTGA  144 (691)
T ss_dssp             STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred             ccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHH-HHHHc--CCCEEEEEECCCcccC
Confidence            999998888999999999999999998877665 4444 34444  8999999999999764

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.77  E-value=1.2e-17  Score=138.74  Aligned_cols=117  Identities=18%  Similarity=0.189  Sum_probs=84.7

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhh--CCCCC-----------CC------CCccccceeEEEEECCeEEEEEEEeCCC
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTS--NTFPT-----------DY------VPTVFDNFSANVVVDGSTVNLGLWDTAG   63 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~--~~~~~-----------~~------~~t~~~~~~~~~~~~~~~~~l~i~D~~G   63 (198)
                      ..+..+|+++|++|+|||||+++++.  +.+..           ++      ..++.......+.+++  +.+++|||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcC
Confidence            34678999999999999999999985  33211           00      0011111122344454  6778999999


Q ss_pred             ccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      +..|...+...++.+|++++|+|++++.+.... ..|. .+...  +.|+++|+||+|+...
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~~--~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATTY--GVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHHT--TCCEEEEEECTTSTTC
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHHc--CCCEEEEEECCCcccc
Confidence            999998888899999999999999998777665 4443 34444  8999999999999764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.76  E-value=2.9e-19  Score=134.90  Aligned_cols=163  Identities=13%  Similarity=0.119  Sum_probs=86.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC-CCCCCC--------CCccc-cceeEEEEECCeEEEEEEEeCCCc-------cCc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN-TFPTDY--------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQ-------EDY   67 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~-~~~~~~--------~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~-------~~~   67 (198)
                      -.++|+++|++|+|||||++++.+. .++...        .++.. .........++....+++||++|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            3589999999999999999998764 333322        11211 111112222344578899999998       444


Q ss_pred             ccccc-------cccC-------------CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144           68 NRLRP-------LSYR-------------GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (198)
Q Consensus        68 ~~~~~-------~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  127 (198)
                      .....       .+++             .+++++++.+.+. .+++.....+   +....++.|+++|+||.|+.....
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~---l~~l~~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAF---MKAIHNKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHH---HHHHTTTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHH---HHHHHhcCCEEEEEEeCCCCCHHH
Confidence            44332       2222             1233444444322 2233332233   333334689999999999975432


Q ss_pred             cccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          128 FLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                              .....+++.+++..+++ ++|++||+++ +++++|..+.+.+....
T Consensus       173 --------~~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          173 --------RERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             --------HHHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTTC
T ss_pred             --------HHHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcCC
Confidence                    01234677888888887 7999999999 99999999999886543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.76  E-value=2.9e-17  Score=136.57  Aligned_cols=118  Identities=15%  Similarity=0.133  Sum_probs=82.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC--CCCCC-----------CCCc---cccce---eEEEEEC-----CeEEEEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD-----------YVPT---VFDNF---SANVVVD-----GSTVNLGLW   59 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~-----------~~~t---~~~~~---~~~~~~~-----~~~~~l~i~   59 (198)
                      .+..+|+++|+.|+|||||+++++..  .+...           +.+.   .+..+   ...+.++     +..+.++||
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            46789999999999999999999753  22110           0000   00001   1122222     234788999


Q ss_pred             eCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           60 DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        60 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      ||||+.+|...+...++.+|++|+|+|+++....... ..| ..+...  ++|+++|+||+|+...
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~-~~~~~~--~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVW-RQANKY--KVPRIAFVNKMDRMGA  149 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHH-HHHHHc--CCCEEEEEeCCCcccc
Confidence            9999999998888999999999999999987665544 333 333333  7999999999999754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.75  E-value=2.1e-17  Score=129.31  Aligned_cols=159  Identities=18%  Similarity=0.144  Sum_probs=106.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCc----ccccccc---cCCCc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY----NRLRPLS---YRGAD   79 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----~~~~~~~---~~~~~   79 (198)
                      .|+++|++|+|||||++.+..... ...+..++.......+.+++ ...+.+||+||....    ..+...+   +..++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            589999999999999999987632 12233333222223344443 235679999997432    2222222   34689


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC---CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           80 VFLLAFSLISKASYENVAKKWIPELRHYA---PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      .+++++|++ ...+..+ ..+...+....   ...|.++|+||+|+...            ...+.+.......+. +++
T Consensus       238 ~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~------------~~~~~l~~~l~~~g~-~vi  302 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE------------EAVKALADALAREGL-AVL  302 (416)
T ss_dssp             EEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH------------HHHHHHHHHHHTTTS-CEE
T ss_pred             hhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH------------HHHHHHHHHHHhcCC-eEE
Confidence            999999997 4455555 45555554443   26899999999999653            122344444455565 689


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCCc
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      .+||+++.|+++++++|.+.+.....
T Consensus       303 ~iSA~~g~gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          303 PVSALTGAGLPALKEALHALVRSTPP  328 (416)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred             EEECCCccCHHHHHHHHHHHHHhccc
Confidence            99999999999999999998865443

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.75  E-value=5.3e-19  Score=134.42  Aligned_cols=113  Identities=18%  Similarity=0.157  Sum_probs=69.7

Q ss_pred             EEEEEEeCCCccC-------------cccccccccCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeec
Q 029144           54 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTK  119 (198)
Q Consensus        54 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK  119 (198)
                      ..+.+|||||...             +......+++.+|++++|+|..+.. ..... ..+...+...  +.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~~--~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDPE--GKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCSS--CSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCCC--CCcEEEEEcC
Confidence            4578999999753             3344556778999999999974332 11111 2344444443  7999999999


Q ss_pred             CCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC---C---CCCHHHHHHHHHHHHcCC
Q 029144          120 LDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK---T---QQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       120 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~---~~~i~~~~~~i~~~~~~~  180 (198)
                      +|+.+...          ...+.+.......+. .++++|+.   +   +.|+.+++..+.+.+...
T Consensus       208 ~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~  263 (315)
T 1jwy_B          208 LDLMDKGT----------DAMEVLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKNH  263 (315)
T ss_dssp             TTSSCSSC----------CCHHHHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred             cccCCcch----------HHHHHHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence            99976431          112222210011112 45665554   4   789999999998887654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.75  E-value=7e-19  Score=136.12  Aligned_cols=153  Identities=20%  Similarity=0.161  Sum_probs=96.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cce------------------------------------------
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNF------------------------------------------   43 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~------------------------------------------   43 (198)
                      .+|+|+|.+|+|||||++++.+..+......+.. ...                                          
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            3899999999999999999999765332221110 000                                          


Q ss_pred             ----------eEEEEE-CCeEEEEEEEeCCCccCc-------------ccccccccCCCcEEEEEEECCChhhHHHHHHH
Q 029144           44 ----------SANVVV-DGSTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFLLAFSLISKASYENVAKK   99 (198)
Q Consensus        44 ----------~~~~~~-~~~~~~l~i~D~~G~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~   99 (198)
                                ...+.+ ......+.+|||||...+             ......+++++|++|+|+|..+.+........
T Consensus       115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~  194 (360)
T 3t34_A          115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIK  194 (360)
T ss_dssp             SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHH
T ss_pred             cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHH
Confidence                      000000 011235789999998776             34455678899999999987654332211123


Q ss_pred             HHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHH
Q 029144          100 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA  172 (198)
Q Consensus       100 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  172 (198)
                      +...+...  +.|+++|+||+|+.+...          ...+....+....+. +|+++|+.++.++++.+..
T Consensus       195 l~~~~~~~--~~~~i~V~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          195 ISREVDPS--GDRTFGVLTKIDLMDKGT----------DAVEILEGRSFKLKY-PWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHSCTT--CTTEEEEEECGGGCCTTC----------CSHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCH
T ss_pred             HHHHhccc--CCCEEEEEeCCccCCCcc----------cHHHHHcCccccccC-CeEEEEECChHHhccCCCH
Confidence            33333333  789999999999976542          333334444444555 6888999988877765543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.74  E-value=8.6e-18  Score=131.53  Aligned_cols=158  Identities=14%  Similarity=0.098  Sum_probs=82.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCC--------CCccc-cceeEEEEECCeEEEEEEEeCCCccCccc-------
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDY--------VPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNR-------   69 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~--------~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------   69 (198)
                      .++|+++|++|+|||||++.+.+..+....        .++.. ..+.......+....+++||++|...+..       
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~  110 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP  110 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence            578999999999999999999987653211        11111 01111111233345789999999765411       


Q ss_pred             ------------------ccccccCCCcEEEEEEECCCh-hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccccccc
Q 029144           70 ------------------LRPLSYRGADVFLLAFSLISK-ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLA  130 (198)
Q Consensus        70 ------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~  130 (198)
                                        ....++.++++.+++|..... .++......|+..+.   .+.|+|+|+||+|+.....   
T Consensus       111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e---  184 (418)
T 2qag_C          111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE---  184 (418)
T ss_dssp             HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH---
Confidence                              123455666655555554432 344444235666654   3799999999999976443   


Q ss_pred             CCCCCccccH--HHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          131 DHPGAVPITT--AQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       131 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                             +..  +.+...+...++ +++++|+.++.++.++|..+.+.+
T Consensus       185 -------v~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          185 -------CQQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             -------HHHHHHHHHHHHHHHTC-CCCCCC-----------------C
T ss_pred             -------HHHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhC
Confidence                   333  566777778887 689999999999999888887754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=1.3e-17  Score=130.19  Aligned_cols=84  Identities=19%  Similarity=0.181  Sum_probs=47.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEE---------------------EECC-eEEEEEEEeCCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANV---------------------VVDG-STVNLGLWDTAG   63 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~---------------------~~~~-~~~~l~i~D~~G   63 (198)
                      ++|+++|.+|+|||||++++.+... ..++..++........                     .+++ ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999998752 2234334432222211                     1222 247799999999


Q ss_pred             ccCc----ccccc---cccCCCcEEEEEEECCCh
Q 029144           64 QEDY----NRLRP---LSYRGADVFLLAFSLISK   90 (198)
Q Consensus        64 ~~~~----~~~~~---~~~~~~~~~i~v~d~~~~   90 (198)
                      ....    ..+..   ..++++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            8542    22222   456899999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.72  E-value=3.3e-17  Score=118.33  Aligned_cols=156  Identities=15%  Similarity=0.075  Sum_probs=94.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-------------eEEEEECC------------------eE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-------------SANVVVDG------------------ST   53 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-------------~~~~~~~~------------------~~   53 (198)
                      +..+|+++|.+|+|||||++++.................             .....++.                  ..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            467999999999999999999986521110000000000             00011111                  12


Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP  133 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  133 (198)
                      +.+.+|||+|+.....   .+-...+.+++|+|+.+.....   ..+...   .  +.|.++|+||+|+.+...      
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~---~~~~~~---~--~~~~iiv~NK~Dl~~~~~------  171 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVV---EKHPEI---F--RVADLIVINKVALAEAVG------  171 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHH---HHCHHH---H--HTCSEEEEECGGGHHHHT------
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhh---hhhhhh---h--hcCCEEEEecccCCcchh------
Confidence            4577999999511111   1112467899999987754221   111111   2  578999999999965321      


Q ss_pred             CCccccHHHHHHHHHHcC-CCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          134 GAVPITTAQGEELRKLIG-APVYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                          ...++........+ ..+++++||++|.|++++++++.+.+....
T Consensus       172 ----~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          172 ----ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             ----CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             ----hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence                34455555555543 237999999999999999999999886543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.67  E-value=4.3e-15  Score=114.01  Aligned_cols=83  Identities=19%  Similarity=0.213  Sum_probs=56.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCcc--
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN--   68 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~--   68 (198)
                      ++|+++|.+|+|||||++++.+... ..++..++.......+.+++.               ...+.+||+||+..+.  
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            6899999999999999999998753 233333332222233444442               1468899999987763  


Q ss_pred             --ccccc---ccCCCcEEEEEEECCC
Q 029144           69 --RLRPL---SYRGADVFLLAFSLIS   89 (198)
Q Consensus        69 --~~~~~---~~~~~~~~i~v~d~~~   89 (198)
                        .+...   .++++|++++|+|+++
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence              23322   3688999999999986

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.66  E-value=1.5e-17  Score=128.38  Aligned_cols=158  Identities=22%  Similarity=0.177  Sum_probs=93.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCC------CCc-----------------------ccc-----------c--
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY------VPT-----------------------VFD-----------N--   42 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~------~~t-----------------------~~~-----------~--   42 (198)
                      ...+|+|+|.+|+|||||++++.+..+.+..      .|+                       +..           .  
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~  109 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  109 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence            3569999999999999999999987763211      122                       000           0  


Q ss_pred             -----e---eEEEEEC-CeEEEEEEEeCCCccC-------------cccccccccCCCc-EEEEEEECCChhhHHHHHHH
Q 029144           43 -----F---SANVVVD-GSTVNLGLWDTAGQED-------------YNRLRPLSYRGAD-VFLLAFSLISKASYENVAKK   99 (198)
Q Consensus        43 -----~---~~~~~~~-~~~~~l~i~D~~G~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~   99 (198)
                           +   ...+.+. .....+.+|||||...             +..+...++.+++ ++++|+|++....-.+. ..
T Consensus       110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~  188 (353)
T 2x2e_A          110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  188 (353)
T ss_dssp             TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred             ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence                 0   0001110 0124688999999642             2334445555555 55566676553332222 23


Q ss_pred             HHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH--HHHHcCCCEEEEeccCCCCCHHHHHHHHHH
Q 029144          100 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE--LRKLIGAPVYIECSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       100 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  175 (198)
                      +...+...  +.|+++|+||+|+.+...          ...+....  +....++.+++++||+++.|++++++.+.+
T Consensus       189 i~~~~~~~--~~~~i~V~NK~Dl~~~~~----------~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHCTT--CTTEEEEEECGGGSCTTC----------CCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHhCcC--CCceEEEeccccccCcch----------hHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            44444443  799999999999975431          11111110  111123335778999999999999998876

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.66  E-value=1.7e-17  Score=120.28  Aligned_cols=153  Identities=17%  Similarity=0.092  Sum_probs=91.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccccee-------------EEEEEC-Ce------------------
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-------------ANVVVD-GS------------------   52 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~------------------   52 (198)
                      +..+|+++|.+|+|||||++++....+...+.++....+.             ..+.++ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            5689999999999999999999977554433333322111             112221 11                  


Q ss_pred             -EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccC
Q 029144           53 -TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLAD  131 (198)
Q Consensus        53 -~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~  131 (198)
                       ...+.++|++|.-.-..   .+-...+..+.++|+........   .+...   .  +.|.++|+||+|+.+...    
T Consensus       117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~---~~~~~---~--~~~~iiv~NK~Dl~~~~~----  181 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE---KHPGI---M--KTADLIVINKIDLADAVG----  181 (226)
T ss_dssp             GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT---TCHHH---H--TTCSEEEEECGGGHHHHT----
T ss_pred             CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh---hhhhH---h--hcCCEEEEeccccCchhH----
Confidence             11345666666311000   01112345667777533221111   00111   1  578999999999976432    


Q ss_pred             CCCCccccHHHHHHHHHHcC-CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          132 HPGAVPITTAQGEELRKLIG-APVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                            ...++...++...+ ..+++++||++|.|++++|+++.+.+.
T Consensus       182 ------~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          182 ------ADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             ------CCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence                  35566666666542 237999999999999999999988764

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.66  E-value=3.3e-15  Score=120.96  Aligned_cols=115  Identities=15%  Similarity=0.127  Sum_probs=83.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC--C---------------CCCCCCcc------ccceeEEEEECCeEEEEEEEeC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT--F---------------PTDYVPTV------FDNFSANVVVDGSTVNLGLWDT   61 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~--~---------------~~~~~~t~------~~~~~~~~~~~~~~~~l~i~D~   61 (198)
                      +.=+|+|+|+.++|||||..+++...  +               ..++.+..      ...-...+.+++  +.++|+||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence            45689999999999999999986311  0               00111111      011123344555  67789999


Q ss_pred             CCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      ||+.+|.......++-+|++|+|+|+..+-..+.. ..| .....+  ++|.++++||+|....
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~-~~a~~~--~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLM-DVCRMR--ATPVMTFVNKMDREAL  167 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHH-HHHHHT--TCCEEEEEECTTSCCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHH-HHHHHh--CCceEEEEecccchhc
Confidence            99999999999999999999999999988766655 444 455555  8999999999998754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.65  E-value=1.5e-16  Score=122.70  Aligned_cols=107  Identities=16%  Similarity=0.131  Sum_probs=69.1

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP  133 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  133 (198)
                      +.+.||||||...   .....+..+|++++|+|....+....+ .       ....+.|+++|+||+|+.+...      
T Consensus       172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~-------~~~~~~p~ivVlNK~Dl~~~~~------  234 (355)
T 3p32_A          172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K-------KGVLELADIVVVNKADGEHHKE------  234 (355)
T ss_dssp             CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C-------TTSGGGCSEEEEECCCGGGHHH------
T ss_pred             CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H-------HhHhhcCCEEEEECCCCcChhH------
Confidence            5677999999532   222345789999999998766544322 1       1112469999999999965321      


Q ss_pred             CCccccHHHHHHHHHHc-----C-CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          134 GAVPITTAQGEELRKLI-----G-APVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       134 ~~~~~~~~~~~~~~~~~-----~-~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                        ......+........     + ..+++++||++|.|+++++++|.+.+..
T Consensus       235 --~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          235 --ARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             --HHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence              000111222221112     1 1379999999999999999999987743

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.65  E-value=3.5e-16  Score=132.32  Aligned_cols=117  Identities=15%  Similarity=0.168  Sum_probs=85.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhC--CCCCC------C--------C--CccccceeEEEEE--------------C
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD------Y--------V--PTVFDNFSANVVV--------------D   50 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~------~--------~--~t~~~~~~~~~~~--------------~   50 (198)
                      ..+..+|+++|+.++|||||+++++..  .+...      +        .  .|.... ...+.+              +
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~-~~~~~~~~~~~~~~~i~~~~~   94 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKST-AISLYSEMSDEDVKEIKQKTD   94 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCC-EEEEEEECCHHHHHHCSSCCC
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeec-eeEEEeccccccccccccccc
Confidence            346789999999999999999999864  11110      0        0  011111 111112              3


Q ss_pred             CeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccc
Q 029144           51 GSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRD  124 (198)
Q Consensus        51 ~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~  124 (198)
                      +..+.+++|||||+.+|...+..+++.+|++|+|+|++++.+++.. ..|.... ..  +.|+++|+||+|+..
T Consensus        95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~-~~--~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQAL-GE--RIKPVVVINKVDRAL  164 (842)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHH-HT--TCEEEEEEECHHHHH
T ss_pred             CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH-Hc--CCCeEEEEECCCcch
Confidence            3468899999999999999999999999999999999998888776 4454333 23  799999999999974

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.64  E-value=3.3e-16  Score=126.87  Aligned_cols=117  Identities=19%  Similarity=0.180  Sum_probs=79.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCC---CCCCCccccceeEEE----------------------------------
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP---TDYVPTVFDNFSANV----------------------------------   47 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~---~~~~~t~~~~~~~~~----------------------------------   47 (198)
                      ...+|+|+|.+|+|||||+|++++..+.   ....+++. .+....                                  
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~-~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD-CFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC-SEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc-eEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            5689999999999999999999988753   22222221 110000                                  


Q ss_pred             ----EECCe-EEEEEEEeCCCccC-----------cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC
Q 029144           48 ----VVDGS-TVNLGLWDTAGQED-----------YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGV  111 (198)
Q Consensus        48 ----~~~~~-~~~l~i~D~~G~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  111 (198)
                          .+++. ...+.||||||...           |...+..++..+|++++|+|+++....... ..++..+...  +.
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~  219 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--ED  219 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CC
Confidence                00000 02478999999864           334445567889999999999875444444 4666666554  68


Q ss_pred             CEEEEeecCCcccc
Q 029144          112 PIILVGTKLDLRDD  125 (198)
Q Consensus       112 p~iiv~nK~Dl~~~  125 (198)
                      |+++|+||+|+...
T Consensus       220 pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          220 KIRVVLNKADMVET  233 (550)
T ss_dssp             GEEEEEECGGGSCH
T ss_pred             CEEEEEECCCccCH
Confidence            99999999999754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.61  E-value=2.4e-14  Score=110.44  Aligned_cols=83  Identities=17%  Similarity=0.177  Sum_probs=55.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECC-------------------eEEEEEEEeCCCccC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDG-------------------STVNLGLWDTAGQED   66 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~-------------------~~~~l~i~D~~G~~~   66 (198)
                      ++|+++|.+|+|||||++++.+... ..++..++.........+++                   ....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999987642 23343333222222222221                   235688999999876


Q ss_pred             ccc----ccc---cccCCCcEEEEEEECCC
Q 029144           67 YNR----LRP---LSYRGADVFLLAFSLIS   89 (198)
Q Consensus        67 ~~~----~~~---~~~~~~~~~i~v~d~~~   89 (198)
                      +.+    +..   ..++++|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            542    211   23688999999999975

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.60  E-value=4.5e-16  Score=119.70  Aligned_cols=102  Identities=16%  Similarity=0.145  Sum_probs=61.1

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP  133 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  133 (198)
                      +.+.++||||....   .......+|++++|+|++.+...+.. ..   .+    -..|.++|+||+|+.+...      
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~~~------  229 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLIVP------  229 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCchh------
Confidence            45679999995321   22345789999999999876433222 11   11    1468899999999964211      


Q ss_pred             CCccccHHHHHHHHH---H------cCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          134 GAVPITTAQGEELRK---L------IGAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       134 ~~~~~~~~~~~~~~~---~------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                          . ......+..   .      ...++++.+||+++.|+++++++|.+.+
T Consensus       230 ----~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~  277 (349)
T 2www_A          230 ----A-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ  277 (349)
T ss_dssp             ----H-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ----H-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence                1 011112211   1      1124788999999999999999998875

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.57  E-value=1.4e-14  Score=107.11  Aligned_cols=118  Identities=12%  Similarity=-0.050  Sum_probs=68.7

Q ss_pred             EEEEEEeCCCccCcccccc------cccCCCcEEEEEEECCChhhHHHHHHHH---HHHHhhhCCCCCEEEEeecCCccc
Q 029144           54 VNLGLWDTAGQEDYNRLRP------LSYRGADVFLLAFSLISKASYENVAKKW---IPELRHYAPGVPIILVGTKLDLRD  124 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~p~iiv~nK~Dl~~  124 (198)
                      +.+.+|||||+..+.....      ..+.. +++++++|+....+.......+   ......  .+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccc
Confidence            4678999999876543321      13356 8899999876433332221111   111222  2789999999999975


Q ss_pred             ccccccCCCCCccc--cHHHHH-H-----------------HHHHcCC-CEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          125 DKQFLADHPGAVPI--TTAQGE-E-----------------LRKLIGA-PVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       125 ~~~~~~~~~~~~~~--~~~~~~-~-----------------~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      .....    .....  ..+... .                 ++..++. .+++++||+++.|++++++++.+.+.
T Consensus       186 ~~~~~----~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          186 EEEKE----RHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHHHH----HHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cccHH----HHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            42100    00000  000000 0                 1234332 26899999999999999999988763

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.56  E-value=1.5e-15  Score=116.55  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=65.2

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP  133 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  133 (198)
                      +.+.||||||......   .....+|++++|+|++..+..... ..   ..  .  +.|.++|+||+|+.+...      
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l-~~---~~--~--~~p~ivv~NK~Dl~~~~~------  211 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGI-KK---GL--M--EVADLIVINKDDGDNHTN------  211 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCC-CH---HH--H--HHCSEEEECCCCTTCHHH------
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHH-HH---hh--h--cccCEEEEECCCCCChHH------
Confidence            5678999999754332   245789999999999765432211 10   00  1  468899999999965321      


Q ss_pred             CCcccc--HHHHHHHHHHcC------CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          134 GAVPIT--TAQGEELRKLIG------APVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       134 ~~~~~~--~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                          ..  .++.+......+      .++++++||++|.|++++++.|.+.+.
T Consensus       212 ----~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          212 ----VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             ----HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                11  112222222222      347899999999999999999998764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.54  E-value=7e-15  Score=122.02  Aligned_cols=157  Identities=21%  Similarity=0.144  Sum_probs=96.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccc------------------------------------------
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDN------------------------------------------   42 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~------------------------------------------   42 (198)
                      ..+|+|+|.+++|||||++++++..+ +.....++...                                          
T Consensus        51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g  130 (772)
T 3zvr_A           51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG  130 (772)
T ss_dssp             CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence            45999999999999999999998765 21111111000                                          


Q ss_pred             ---------eeEEEEECCeEEEEEEEeCCCccCc-------------cccccccc-CCCcEEEEEEECCChhhHHHHHHH
Q 029144           43 ---------FSANVVVDGSTVNLGLWDTAGQEDY-------------NRLRPLSY-RGADVFLLAFSLISKASYENVAKK   99 (198)
Q Consensus        43 ---------~~~~~~~~~~~~~l~i~D~~G~~~~-------------~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~~   99 (198)
                               ....+...+ ...+.|+||||...-             ......++ ..+|++++|+|++.+....+. ..
T Consensus       131 ~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l~  208 (772)
T 3zvr_A          131 TNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK  208 (772)
T ss_dssp             STTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-HH
T ss_pred             CCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-HH
Confidence                     000111111 124679999996431             11222223 578999999999876444333 24


Q ss_pred             HHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHH--HHHHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          100 WIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE--LRKLIGAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       100 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      ++..+...  +.|+++|+||+|+.+...          ........  +....++.+++.+||++|.|++++++.+.+.
T Consensus       209 ll~~L~~~--g~pvIlVlNKiDlv~~~~----------~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          209 IAKEVDPQ--GQRTIGVITKLDLMDEGT----------DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHCTT--CSSEEEEEECTTSSCTTC----------CSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHhc--CCCEEEEEeCcccCCcch----------hhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            55555554  799999999999976432          11111110  0001233456779999999999999999873

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.53  E-value=5.7e-15  Score=121.72  Aligned_cols=114  Identities=18%  Similarity=0.109  Sum_probs=80.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh--CCCCCC-----------CCCcc---ccce---eEEEEECCeEEEEEEEeCCCccC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS--NTFPTD-----------YVPTV---FDNF---SANVVVDGSTVNLGLWDTAGQED   66 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~--~~~~~~-----------~~~t~---~~~~---~~~~~~~~~~~~l~i~D~~G~~~   66 (198)
                      .-+|+|+|+.++|||||..+++.  +.+...           +.+..   +-.+   ...+.+++  +.++++|||||.+
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTPGH~D   79 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN--TKVNIIDTPGHMD   79 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS--CBCCCEECCCSSS
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC--EEEEEEECCCcHH
Confidence            34799999999999999999873  222110           00000   0001   11123344  6678999999999


Q ss_pred             cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      |.......++-+|++|+|+|+..+-..+..  .........  ++|.++++||+|....
T Consensus        80 F~~Ev~raL~~~DgavlVVDa~~GV~~qT~--~v~~~a~~~--~lp~i~~INKmDr~~a  134 (638)
T 3j25_A           80 FLAEVYRSLSVLDGAILLISAKDGVQAQTR--ILFHALRKM--GIPTIFFINKIDQNGI  134 (638)
T ss_dssp             THHHHHHHHTTCSEEECCEESSCTTCSHHH--HHHHHHHHH--TCSCEECCEECCSSSC
T ss_pred             HHHHHHHHHHHhCEEEEEEeCCCCCcHHHH--HHHHHHHHc--CCCeEEEEeccccccC
Confidence            999999999999999999999887655543  334455555  7999999999998654

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.52  E-value=2.2e-13  Score=105.06  Aligned_cols=142  Identities=12%  Similarity=0.081  Sum_probs=91.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc-------ccccCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-------PLSYRG   77 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~~~   77 (198)
                      ..+|.++|.||+|||||+|++.+... ..++..|+.+.....+.+++  ..++++|+||...-.+..       ...++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            45899999999999999999997542 45677788888888888888  456799999964322111       123567


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144           78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      +|++++|+|++++..-......-+..........|.+++.||.|...-..  .........+.++.+.+...+.
T Consensus       150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i--~~~~~~~~l~~eeik~il~~~~  221 (376)
T 4a9a_A          150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISI--TNTVPLTHLGNDEIRAVMSEYR  221 (376)
T ss_dssp             CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEE--EESSCCSSCCHHHHHHHHHHTT
T ss_pred             cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhh--hcchhhhhccHHHHHHHHHHhc
Confidence            99999999999875433221222222222224678899999999754221  1111112245556555555543

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.52  E-value=2.2e-13  Score=113.67  Aligned_cols=117  Identities=19%  Similarity=0.205  Sum_probs=80.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC--------CCCCC--CCCccccce---------eEEEEECC-----eEEEEEEEe
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN--------TFPTD--YVPTVFDNF---------SANVVVDG-----STVNLGLWD   60 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~--------~~~~~--~~~t~~~~~---------~~~~~~~~-----~~~~l~i~D   60 (198)
                      +.=+|+|+|+.++|||||..+|+..        .....  +..+.....         ...+.+.+     ..+.++++|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            4458999999999999999888731        11110  111111111         11222321     358899999


Q ss_pred             CCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      ||||-+|.......++-+|++|+|+|+..+-..+.. .-| ......  ++|.++++||+|....
T Consensus        92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~-~~a~~~--~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVW-RQANKY--GVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHH-HHHHHH--TCCEEEEEECSSSTTC
T ss_pred             CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHH-HHHHHc--CCCeEEEEccccccCc
Confidence            999999999999999999999999999887666554 344 444444  7999999999998643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.50  E-value=1.6e-13  Score=103.52  Aligned_cols=98  Identities=15%  Similarity=0.132  Sum_probs=79.6

Q ss_pred             ccCcccccccccCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCcccc-HH
Q 029144           64 QEDYNRLRPLSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPIT-TA  141 (198)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~  141 (198)
                      ++++..+.+.+++++|++++|+|++++. ++..+ ..|+..+...  ++|+++|+||+|+.++..          +. .+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~~~~~~--~~~~ilV~NK~DL~~~~~----------v~~~~  132 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLVVYEYF--KVEPVIVFNKIDLLNEEE----------KKELE  132 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHHHHHHT--TCEEEEEECCGGGCCHHH----------HHHHH
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHHHHHhC--CCCEEEEEEcccCCCccc----------cHHHH
Confidence            6788888888999999999999999986 77766 7888777664  899999999999975431          22 34


Q ss_pred             HHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHH
Q 029144          142 QGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  175 (198)
                      +...+....+. +++++||++|.|+++++..+..
T Consensus       133 ~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          133 RWISIYRDAGY-DVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             HHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTTT
T ss_pred             HHHHHHHHCCC-eEEEEECCCCCCHHHHHhhccC
Confidence            55666667777 7999999999999999987643

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.39  E-value=3.1e-13  Score=95.12  Aligned_cols=105  Identities=7%  Similarity=-0.046  Sum_probs=69.7

Q ss_pred             CCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHH---HHHHhhh--CCCCCEEEEeecC-CcccccccccCCCCC
Q 029144           62 AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKW---IPELRHY--APGVPIILVGTKL-DLRDDKQFLADHPGA  135 (198)
Q Consensus        62 ~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~---~~~~~~~--~~~~p~iiv~nK~-Dl~~~~~~~~~~~~~  135 (198)
                      +||+.++.+|.+++.+.|++|||+|.+|.+-.+ ...++   ...+...  ..+.|++|.+||. |++..          
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A----------  178 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR----------  178 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB----------
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC----------
Confidence            388999999999999999999999999875433 32333   3344332  2588999999995 67543          


Q ss_pred             ccccHHHHHHHHH----HcCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          136 VPITTAQGEELRK----LIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       136 ~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                        .+..++.+...    ...+ .+..|||.+|+|+.+.++|+.+.+..+
T Consensus       179 --ms~~EI~e~L~L~~l~R~W-~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          179 --MPCFYLAHELHLNLLNHPW-LVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             --CCHHHHHHHTTGGGGCSCE-EEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             --CCHHHHHHHcCCcCCCCCE-EEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence              44444433221    1233 467899999999999999999877544

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.38  E-value=4.9e-13  Score=102.32  Aligned_cols=104  Identities=15%  Similarity=0.161  Sum_probs=62.9

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP  133 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  133 (198)
                      +.+.|+||||...-.   ......+|.+++++|+..++..+.+ ..   .+.    ..|.++++||+|+.+...      
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~---~i~----~~~~ivvlNK~Dl~~~~~------  210 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KK---GIF----ELADMIAVNKADDGDGER------  210 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CT---THH----HHCSEEEEECCSTTCCHH------
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HH---HHh----ccccEEEEEchhccCchh------
Confidence            567799999974321   1234689999999998754332111 11   111    245677889999754221      


Q ss_pred             CCccccHHHHHHHHHHc---C------CCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          134 GAVPITTAQGEELRKLI---G------APVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       134 ~~~~~~~~~~~~~~~~~---~------~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                          ......+.+....   .      .++++.+||+++.|++++++.|.+.+.
T Consensus       211 ----~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          211 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                2222233332211   1      246888999999999999999988653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.27  E-value=6.9e-12  Score=92.42  Aligned_cols=106  Identities=7%  Similarity=-0.052  Sum_probs=74.0

Q ss_pred             CCCccCcccccccccCCCcEEEEEEECCChhhHH---HHHHHHHHHHhhh--CCCCCEEEEeec-CCcccccccccCCCC
Q 029144           61 TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE---NVAKKWIPELRHY--APGVPIILVGTK-LDLRDDKQFLADHPG  134 (198)
Q Consensus        61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~---~~~~~~~~~~~~~--~~~~p~iiv~nK-~Dl~~~~~~~~~~~~  134 (198)
                      .+||+.++..|.+++.+.|++|||+|.+|.+-++   ++ .++...+...  ..+.|++|.+|| .|++..         
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL-~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---------  263 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---------  263 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHH-HHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---------
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHH-HHHHHHhcchhhcCCCeEEEEeCCcccccCC---------
Confidence            4688999999999999999999999999876433   22 2233444332  358999999996 588643         


Q ss_pred             CccccHHHHHHHHH----HcCCCEEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          135 AVPITTAQGEELRK----LIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       135 ~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                         .+..++.+...    ...+ .+..|||.+|+|+.+.++|+.+.+..+
T Consensus       264 ---ms~~EI~e~L~L~~l~r~W-~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          264 ---MPCFYLAHELHLNLLNHPW-LVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             ---CCHHHHHHHTTGGGGCSCE-EEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             ---CCHHHHHHHcCCccCCCcE-EEEecccCCCcCHHHHHHHHHHHHHhh
Confidence               44444433221    1233 467899999999999999999987544

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.25  E-value=4.1e-12  Score=98.46  Aligned_cols=87  Identities=17%  Similarity=0.097  Sum_probs=49.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCcc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDYN   68 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~   68 (198)
                      ..++|+++|.+|+|||||++++.+..+. .++..++.......+.+++.               ...+.+||+||...+.
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4579999999999999999999987542 22333333333333444331               2358899999987655


Q ss_pred             c-------ccccccCCCcEEEEEEECCChh
Q 029144           69 R-------LRPLSYRGADVFLLAFSLISKA   91 (198)
Q Consensus        69 ~-------~~~~~~~~~~~~i~v~d~~~~~   91 (198)
                      +       .+...++++|++++|+|+.+.+
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            4       2344578999999999987643

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.25  E-value=3e-10  Score=88.20  Aligned_cols=85  Identities=22%  Similarity=0.246  Sum_probs=59.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccCc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQEDY   67 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~   67 (198)
                      +..+|.++|.+|+|||||++.+.+...  ..++..++.......+.+.+.               ...+.+||+||....
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            457899999999999999999998653  344444554445555555541               135789999996443


Q ss_pred             cc-------ccccccCCCcEEEEEEECCC
Q 029144           68 NR-------LRPLSYRGADVFLLAFSLIS   89 (198)
Q Consensus        68 ~~-------~~~~~~~~~~~~i~v~d~~~   89 (198)
                      .+       .....++.+|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            22       22234578999999999863

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.09  E-value=1.4e-10  Score=89.71  Aligned_cols=98  Identities=17%  Similarity=0.239  Sum_probs=74.3

Q ss_pred             CccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH
Q 029144           63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ  142 (198)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  142 (198)
                      ..++|.+....+.+.++++++|+|++++.      ..|...+.....+.|+++|+||+|+.+..           ...+.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~-----------~~~~~  117 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKS-----------VKHDK  117 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTT-----------SCHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCcc-----------cCHHH
Confidence            35678888888889999999999999853      34555566656689999999999997543           22233


Q ss_pred             H----HHHHHHcCCC--EEEEeccCCCCCHHHHHHHHHHHH
Q 029144          143 G----EELRKLIGAP--VYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       143 ~----~~~~~~~~~~--~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      .    ..++...+..  .++.+||++|.|++++++.+.+..
T Consensus       118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~  158 (368)
T 3h2y_A          118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR  158 (368)
T ss_dssp             HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence            3    3345556653  689999999999999999998754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.96  E-value=5.6e-10  Score=86.39  Aligned_cols=98  Identities=17%  Similarity=0.239  Sum_probs=72.4

Q ss_pred             CccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH
Q 029144           63 GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ  142 (198)
Q Consensus        63 G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  142 (198)
                      .++.|.+....+++.++++++|+|++++.+      .|...+.....+.|+++|+||+|+.+..           ...+.
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~-----------~~~~~  119 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRS-----------VKYPK  119 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTT-----------CCHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCc-----------cCHHH
Confidence            477888888888889999999999998774      2333444444589999999999997643           22233


Q ss_pred             H----HHHHHHcCC--CEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          143 G----EELRKLIGA--PVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       143 ~----~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      .    ...+...+.  ..++.+||++|.|++++++.+.+..
T Consensus       120 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          120 LLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            3    333555565  3689999999999999999998765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.90  E-value=2.7e-08  Score=77.88  Aligned_cols=115  Identities=17%  Similarity=0.226  Sum_probs=61.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCC----Ccc-ccceeEEEEECCeEEEEEEEeCCCccCccc-----------
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYV----PTV-FDNFSANVVVDGSTVNLGLWDTAGQEDYNR-----------   69 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~----~t~-~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-----------   69 (198)
                      .++++|+|++|+|||||++.+.+..+.....    +.. ...+.......+....+.++|++|......           
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~  121 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF  121 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence            4679999999999999999998765432111    111 111111111122234678999998532100           


Q ss_pred             ---c-----------cc--cccCCC--cE-EEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           70 ---L-----------RP--LSYRGA--DV-FLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        70 ---~-----------~~--~~~~~~--~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                         .           ..  .....+  |+ ++++.|...+-+..+.  .++..+.   .+.|+|+|.||+|....
T Consensus       122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccch
Confidence               0           00  011222  33 5556666544433333  4444444   47999999999998654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.90  E-value=1.4e-08  Score=75.31  Aligned_cols=114  Identities=19%  Similarity=0.168  Sum_probs=63.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCC---------CCCccccceeEEEEEC--CeEEEEEEEeCCCccCccc-----
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTD---------YVPTVFDNFSANVVVD--GSTVNLGLWDTAGQEDYNR-----   69 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~---------~~~t~~~~~~~~~~~~--~~~~~l~i~D~~G~~~~~~-----   69 (198)
                      .++++++|+.|+|||||++.+.+...+..         ...+.. .-...+...  +....+.++|++|-.....     
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~-~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~   80 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVE-IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW   80 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCS-CCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCccee-eeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence            47999999999999999999886432211         001110 001111111  1223678999998321100     


Q ss_pred             -----------------------ccccccCCCcEEEEEEECC-ChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           70 -----------------------LRPLSYRGADVFLLAFSLI-SKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        70 -----------------------~~~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                                             .....+..+++.++++|.. .+-...+  ..++..+..   ..++++|.+|+|....
T Consensus        81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD--~~~l~~L~~---~~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD--LEFMKHLSK---VVNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH--HHHHHHHHT---TSEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH--HHHHHHHHh---cCcEEEEEeccccCCH
Confidence                                   0011233467888899854 3322222  244445544   3899999999998654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.87  E-value=1.3e-09  Score=87.16  Aligned_cols=151  Identities=13%  Similarity=0.061  Sum_probs=84.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh------CCC----CCCCCCccc---------cceeEEEE----------------E
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS------NTF----PTDYVPTVF---------DNFSANVV----------------V   49 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~------~~~----~~~~~~t~~---------~~~~~~~~----------------~   49 (198)
                      +...|+++|.+|+||||+++++..      ...    .+.+.+...         ..+.....                .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            456899999999999999988872      211    011122110         00110000                0


Q ss_pred             CCeEEEEEEEeCCCccCccc-cccc---c--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeecCCc
Q 029144           50 DGSTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLDL  122 (198)
Q Consensus        50 ~~~~~~l~i~D~~G~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl  122 (198)
                      ....+.+.|+||||...... ++..   .  +..+|.+++|+|+........    ....+..   ..|+ .+|+||+|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCcc
Confidence            00225677999999754221 1100   1  126899999999987643222    2223332   2575 888999999


Q ss_pred             ccccccccCCCCCccccHHHHHHHHHHcCCC-----------------EEEEeccCCCCC-HHHHHHHHHHH
Q 029144          123 RDDKQFLADHPGAVPITTAQGEELRKLIGAP-----------------VYIECSSKTQQN-VKAVFDAAIKV  176 (198)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~Sa~~~~~-i~~~~~~i~~~  176 (198)
                      .....          .    +.......+.+                 +.+.+|+..|.| +.++++++.+.
T Consensus       253 ~~~~g----------~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGG----------G----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCT----------H----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchH----------H----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            64321          1    11222233331                 123379999999 99999998876

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.84  E-value=3e-09  Score=79.38  Aligned_cols=101  Identities=17%  Similarity=0.097  Sum_probs=67.9

Q ss_pred             EEeCCCccC-cccccccccCCCcEEEEEEECCChhhHHH-HHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCC
Q 029144           58 LWDTAGQED-YNRLRPLSYRGADVFLLAFSLISKASYEN-VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGA  135 (198)
Q Consensus        58 i~D~~G~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  135 (198)
                      +-..|||.. ........+.++|+++.|+|+.++.+... ....|+       .+.|.++|+||+|+.+..         
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~---------   66 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAA---------   66 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHH---------
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHH---------
Confidence            456788853 33444556789999999999999877652 113332       489999999999996532         


Q ss_pred             ccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          136 VPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                         ..+....+....+. +++.+||.++.|+++++..+.+.+.
T Consensus        67 ---~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           67 ---VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             ---HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence               12233344444566 6889999999999999998887764

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.83  E-value=3.5e-10  Score=87.53  Aligned_cols=111  Identities=11%  Similarity=0.122  Sum_probs=64.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC------CC-CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc--------
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN------TF-PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------   71 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------   71 (198)
                      .+|+++|.+|+|||||+|++++.      .. ...+..++..  .....++..   +.++||||........        
T Consensus       163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  237 (369)
T 3ec1_A          163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL  237 (369)
T ss_dssp             SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred             CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence            57999999999999999999875      11 1122222221  112223322   5699999964322111        


Q ss_pred             cccc--CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccc
Q 029144           72 PLSY--RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK  126 (198)
Q Consensus        72 ~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  126 (198)
                      ...+  +..+.++++++....-....+ .. +..+..  .+.|+++++||.|.....
T Consensus       238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l-~~-l~~l~~--~~~~~~~v~~k~d~~~~~  290 (369)
T 3ec1_A          238 KIITPKREIHPRVYQLNEGQTLFFGGL-AR-LDYIKG--GRRSFVCYMANELTVHRT  290 (369)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTT-EE-EEEEES--SSEEEEEEECTTSCEEEE
T ss_pred             HHHhcccccCceEEEEcCCceEEECCE-EE-EEEccC--CCceEEEEecCCcccccc
Confidence            1111  567899999987433111111 11 122222  378999999999997643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.82  E-value=4.7e-08  Score=76.43  Aligned_cols=169  Identities=12%  Similarity=0.094  Sum_probs=87.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcc-ccce--eEEEEECCeEEEEEEEeCCCccCccc-----ccccccCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNF--SANVVVDGSTVNLGLWDTAGQEDYNR-----LRPLSYRG   77 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~-~~~~--~~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~~~~~   77 (198)
                      ...++++|++|+|||||++.+.+...+..-.-+. +...  ...+.-......+.+||++|......     +....+..
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            4579999999999999999998743221110000 0000  01111111111467999998532111     11112333


Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHH----HHcC
Q 029144           78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELR----KLIG  151 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~  151 (198)
                      .+..++ ++...+. -..  ..+...+...  +.|+++|.||.|+.--+++.  .+.. .+....+..+++.    .+.+
T Consensus       149 ~~~~~~-lS~G~~~-kqr--v~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~-~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          149 YDFFII-ISATRFK-KND--IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTF-DKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             CSEEEE-EESSCCC-HHH--HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTC-CHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCeEE-eCCCCcc-HHH--HHHHHHHHhc--CCCeEEEEecCcccccCcccccCCHH-HHHHHHHHHHHHHHHHHHhcC
Confidence            455554 7765211 111  2344444444  78999999999975211111  1111 1111222333433    1222


Q ss_pred             --CCEEEEecc--CCCCCHHHHHHHHHHHHcCCC
Q 029144          152 --APVYIECSS--KTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       152 --~~~~~~~Sa--~~~~~i~~~~~~i~~~~~~~~  181 (198)
                        ....+.+|+  .++.|++++.+.+.+.+....
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence              335788999  566679999999998875544

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.72  E-value=3.1e-10  Score=87.81  Aligned_cols=111  Identities=12%  Similarity=0.111  Sum_probs=63.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC--------CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccc------
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFP--------TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRP------   72 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~------   72 (198)
                      .+|+++|.+|+|||||+|++++....        ..+..|+..  .....+.+.   +.++||||.........      
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  235 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLD--LIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS  235 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----C--EEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecc--eEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence            57999999999999999999875311        112222211  111222322   66999999643221110      


Q ss_pred             --c--ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCccccc
Q 029144           73 --L--SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK  126 (198)
Q Consensus        73 --~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  126 (198)
                        .  .....+.++++++....-....+  ..+..+..  .+.|+++++||+|.....
T Consensus       236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~~  289 (368)
T 3h2y_A          236 LKLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHRT  289 (368)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEE
T ss_pred             HHHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCccccccc
Confidence              1  13567888899887432111111  11112222  278999999999997643

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.51  E-value=1.2e-07  Score=70.60  Aligned_cols=57  Identities=25%  Similarity=0.275  Sum_probs=35.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCcc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQE   65 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (198)
                      .+.++|+++|.+|+|||||+|++.+....  .....++....  .+..+.   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence            35689999999999999999999976532  22222222111  122222   36699999963

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.46  E-value=9.7e-08  Score=70.41  Aligned_cols=56  Identities=13%  Similarity=0.068  Sum_probs=33.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED   66 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~   66 (198)
                      ++++++|.+|+|||||+|++.+...... .++.+... ...+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            5899999999999999999997654221 11111111 11122222   467999999754

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.45  E-value=3.7e-07  Score=71.79  Aligned_cols=135  Identities=16%  Similarity=0.120  Sum_probs=73.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh-----C-CC----CCCCCCcc-------ccceeEEEEE-C----------------
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS-----N-TF----PTDYVPTV-------FDNFSANVVV-D----------------   50 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~-----~-~~----~~~~~~t~-------~~~~~~~~~~-~----------------   50 (198)
                      ++..|+++|++|+||||++..+..     + ..    .+.+.+..       .......+.. .                
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            467899999999999999977752     1 10    11121210       0000000110 0                


Q ss_pred             -CeEEEEEEEeCCCccCccc-----ccc-cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144           51 -GSTVNLGLWDTAGQEDYNR-----LRP-LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (198)
Q Consensus        51 -~~~~~l~i~D~~G~~~~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  123 (198)
                       ...+.+.|+||||......     +.. .....+|.+++|+|+.........    ...+...  -.+..+|+||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCc
Confidence             0125677999999543221     100 112357899999999875443322    2333332  34556889999996


Q ss_pred             cccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144          124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ...              ..+.......+. |+..++.
T Consensus       253 ~~g--------------G~~ls~~~~~g~-PI~fig~  274 (443)
T 3dm5_A          253 AKG--------------GGALSAVAATGA-PIKFIGT  274 (443)
T ss_dssp             SSH--------------HHHHHHHHTTCC-CEEEEEC
T ss_pred             ccc--------------cHHHHHHHHHCC-CEEEEEc
Confidence            532              234455556676 4544554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.45  E-value=1.6e-07  Score=70.63  Aligned_cols=93  Identities=22%  Similarity=0.203  Sum_probs=64.8

Q ss_pred             CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccc--cHHHH
Q 029144           66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPI--TTAQG  143 (198)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~  143 (198)
                      +-..+.+..+.++|.+++|+|+.+|..-.....+++......  ++|.++|+||+|+.++..          .  ..+..
T Consensus        75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~----------~~~~~~~~  142 (307)
T 1t9h_A           75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD----------TEDTIQAY  142 (307)
T ss_dssp             CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH----------HHHHHHHH
T ss_pred             hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhh----------hHHHHHHH
Confidence            334455567889999999999998765544446666655555  899999999999976421          0  02233


Q ss_pred             HHHHHHcCCCEEEEeccCCCCCHHHHHH
Q 029144          144 EELRKLIGAPVYIECSSKTQQNVKAVFD  171 (198)
Q Consensus       144 ~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  171 (198)
                      .......+. +++.+||.++.|+++++.
T Consensus       143 ~~~y~~~g~-~v~~~sa~~~~g~~~L~~  169 (307)
T 1t9h_A          143 AEDYRNIGY-DVYLTSSKDQDSLADIIP  169 (307)
T ss_dssp             HHHHHHHTC-CEEECCHHHHTTCTTTGG
T ss_pred             HHHHHhCCC-eEEEEecCCCCCHHHHHh
Confidence            444445576 688899999888776654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.40  E-value=1.7e-07  Score=73.80  Aligned_cols=64  Identities=19%  Similarity=0.147  Sum_probs=39.0

Q ss_pred             EEEEEEeCCCccCccc-cc-----ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCC-C-EEEEeecCCccc
Q 029144           54 VNLGLWDTAGQEDYNR-LR-----PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGV-P-IILVGTKLDLRD  124 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~iiv~nK~Dl~~  124 (198)
                      +.+.|+||||...... +.     ...+..+|.+++|+|+..+..   . ......+.   +.. | ..+|+||+|...
T Consensus       181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~-~~~~~~~~---~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---A-GIQAKAFK---EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---H-HHHHHHHH---TTSCSCEEEEEECSSSCS
T ss_pred             CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---H-HHHHHHHh---hcccCCeEEEEeCCCCcc
Confidence            5677999999654211 00     112236899999999876542   2 12222222   235 6 789999999854

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.40  E-value=1.2e-07  Score=69.85  Aligned_cols=94  Identities=15%  Similarity=0.078  Sum_probs=61.2

Q ss_pred             CCCccCc-ccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCcccc
Q 029144           61 TAGQEDY-NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPIT  139 (198)
Q Consensus        61 ~~G~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  139 (198)
                      .|||... .......+.++|+++.|+|+.++.+....  .    +. .. ++|.++|+||+|+.+..            .
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~----l~-ll-~k~~iivlNK~DL~~~~------------~   63 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G----VD-FS-RKETIILLNKVDIADEK------------T   63 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T----SC-CT-TSEEEEEEECGGGSCHH------------H
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H----HH-hc-CCCcEEEEECccCCCHH------------H
Confidence            4776432 22344567899999999999988766432  1    11 12 78999999999997532            1


Q ss_pred             HHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          140 TAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      .+....+....+. ++ .+||.++.|+++++..+.+.
T Consensus        64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCCT
T ss_pred             HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHHh
Confidence            1233344445566 46 89999999999998776543

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.38  E-value=4.2e-07  Score=74.05  Aligned_cols=63  Identities=19%  Similarity=0.110  Sum_probs=39.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEE-----CCeEEEEEEEeCCCccC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-----DGSTVNLGLWDTAGQED   66 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~-----~~~~~~l~i~D~~G~~~   66 (198)
                      .+..+|+|+|.+|+|||||+|++.+....-...+++.........+     ......+.++||||...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            3568999999999999999999998753212333332222111111     11124567999999754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.07  E-value=6.3e-06  Score=64.80  Aligned_cols=90  Identities=12%  Similarity=0.080  Sum_probs=52.1

Q ss_pred             EEEEEEeCCCccC--ccc-----ccc-cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           54 VNLGLWDTAGQED--YNR-----LRP-LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        54 ~~l~i~D~~G~~~--~~~-----~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      +.+.++||||...  ...     +.. ......+.+++|+|+.........    ...+...  -.+..+|+||.|....
T Consensus       180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTAK  253 (433)
T ss_dssp             CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCSC
T ss_pred             CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEeccccccc
Confidence            5667999999644  111     000 011246899999999875443322    2333333  2467889999999643


Q ss_pred             cccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCH
Q 029144          126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNV  166 (198)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  166 (198)
                      .              ..+.......+. |+..++.  |+++
T Consensus       254 ~--------------G~als~~~~~g~-Pi~fig~--Ge~v  277 (433)
T 3kl4_A          254 G--------------GGALSAVVATGA-TIKFIGT--GEKI  277 (433)
T ss_dssp             H--------------HHHHHHHHHHTC-EEEEEEC--CSSS
T ss_pred             c--------------hHHHHHHHHHCC-CEEEEEC--CCCh
Confidence            2              234455556676 6655654  5443

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.07  E-value=1.8e-05  Score=60.73  Aligned_cols=87  Identities=20%  Similarity=0.202  Sum_probs=57.4

Q ss_pred             ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCC
Q 029144           74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAP  153 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (198)
                      ...++|.+++|.+. +|..-.....+++......  ++|.++|+||+|+.++..         ....+.........|. 
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~---------~~~~~~~~~~y~~~G~-  193 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG---------MDFVNEQMDIYRNIGY-  193 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH---------HHHHHHHHHHHHTTTC-
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh---------HHHHHHHHHHHHhCCC-
Confidence            36789999988665 5654433446666555555  789999999999976421         0001122333345677 


Q ss_pred             EEEEeccCCCCCHHHHHHHH
Q 029144          154 VYIECSSKTQQNVKAVFDAA  173 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i  173 (198)
                      +++.+||.++.|++++...+
T Consensus       194 ~v~~~Sa~~~~gl~~L~~~~  213 (358)
T 2rcn_A          194 RVLMVSSHTQDGLKPLEEAL  213 (358)
T ss_dssp             CEEECBTTTTBTHHHHHHHH
T ss_pred             cEEEEecCCCcCHHHHHHhc
Confidence            58889999999999887643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.00  E-value=5.1e-06  Score=68.32  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .|+|+|+.|+|||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            48999999999999999988754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.92  E-value=2.2e-07  Score=74.16  Aligned_cols=110  Identities=15%  Similarity=0.018  Sum_probs=62.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc---eeEEEEECCeEEEEEEEeCCCccC--ccccc--------
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN---FSANVVVDGSTVNLGLWDTAGQED--YNRLR--------   71 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~l~i~D~~G~~~--~~~~~--------   71 (198)
                      ..+.|+++|.+|+||||+.+++....... ..++....   +...  ..+......+||..|++.  +...+        
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~--~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~  114 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRD--MVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV  114 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHH--HHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhh--hccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999887542100 11111100   0000  001112235889888733  23332        


Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCC
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD  121 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  121 (198)
                      ..++...++.++|+|.++. +.+.. ..|...+...  +.+++++-..++
T Consensus       115 ~~~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~~~~~  160 (469)
T 1bif_A          115 RKFLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVESICV  160 (469)
T ss_dssp             HHHHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEEECCC
T ss_pred             HHHHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEEEECC
Confidence            4455567788999999987 34443 6776666665  445555443333

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.89  E-value=9.8e-06  Score=60.76  Aligned_cols=91  Identities=14%  Similarity=0.066  Sum_probs=52.7

Q ss_pred             EEEEEEeCCCccC--ccc-ccc-----cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 029144           54 VNLGLWDTAGQED--YNR-LRP-----LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD  124 (198)
Q Consensus        54 ~~l~i~D~~G~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~  124 (198)
                      +.+.++||||...  ... +..     .....+|.+++|+|+.......    .....+..   ..| ..+|.||.|...
T Consensus       181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~~---~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY----DLASKFNQ---ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH----HHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred             CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH----HHHHHHHh---hCCCCEEEEeCCCCCc
Confidence            5677999999765  211 110     1234689999999987542221    11223332   356 678899999853


Q ss_pred             ccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHH
Q 029144          125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKA  168 (198)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (198)
                      .              ...+.......+. |+..++  .|+++++
T Consensus       254 ~--------------~g~~~~~~~~~~~-pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 K--------------GGGALSAVAATGA-TIKFIG--TGEKIDE  280 (297)
T ss_dssp             T--------------HHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred             c--------------hHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence            2              1234556667777 455454  4555543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.70  E-value=8.3e-05  Score=58.70  Aligned_cols=24  Identities=13%  Similarity=0.126  Sum_probs=21.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +..-|.|+|.+++|||||+|++++
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhh
Confidence            456789999999999999999985

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.47  E-value=7.8e-05  Score=51.55  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999877653

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.42  E-value=9.4e-05  Score=52.33  Aligned_cols=28  Identities=29%  Similarity=0.271  Sum_probs=21.3

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      |...+...|.++|+.|+|||||++.+.+
T Consensus         1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            1 MSAPKPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             ----CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            6556677899999999999999987765

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.40  E-value=0.00011  Score=51.59  Aligned_cols=30  Identities=20%  Similarity=0.202  Sum_probs=23.2

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCC
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      |+-.....|+++|++||||||+++.+....
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            555566789999999999999999887654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.38  E-value=0.00014  Score=50.42  Aligned_cols=28  Identities=18%  Similarity=0.146  Sum_probs=24.5

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      |+......|++.|.+||||||+.+.+..
T Consensus         1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence            7777777899999999999999988764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.38  E-value=0.00011  Score=50.81  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++|++|+|||||++.+...
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999988763

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.37  E-value=0.00013  Score=50.55  Aligned_cols=29  Identities=24%  Similarity=0.299  Sum_probs=23.7

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      |+..+...|+++|.+|+||||+.+.+...
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            55666778999999999999999877653

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.37  E-value=0.00013  Score=51.30  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=20.7

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +....-.|+++|++|+||||+++.+..
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            334456799999999999999988764

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.35  E-value=0.00049  Score=54.23  Aligned_cols=64  Identities=19%  Similarity=0.159  Sum_probs=37.4

Q ss_pred             EEEEEEeCCCccCccc-ccc-----cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 029144           54 VNLGLWDTAGQEDYNR-LRP-----LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRD  124 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~  124 (198)
                      +.+.|+||||...... ...     ..+..++.+++|+|+.........    ...+..   ..+ .-+|+||.|...
T Consensus       184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~----~~~f~~---~l~i~gvVlnK~D~~~  254 (433)
T 2xxa_A          184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT----AKAFNE---ALPLTGVVLTKVDGDA  254 (433)
T ss_dssp             CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH----HHHHHH---HSCCCCEEEECTTSSS
T ss_pred             CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH----HHHHhc---cCCCeEEEEecCCCCc
Confidence            5677999999644321 111     113468899999998755332222    223332   244 246889999854

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.32  E-value=0.00018  Score=50.55  Aligned_cols=25  Identities=20%  Similarity=0.240  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +.--|+++|++|+|||||++.+...
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhh
Confidence            4446899999999999999998854

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.31  E-value=0.00014  Score=51.08  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .++++|++|+|||||++.+.+
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999988875

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.28  E-value=0.00016  Score=51.10  Aligned_cols=28  Identities=25%  Similarity=0.147  Sum_probs=22.1

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      |+..+...|++.|.+||||||+.+.+..
T Consensus         4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            4 MAARRGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            5555677899999999999999988764

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.23  E-value=0.0003  Score=48.14  Aligned_cols=24  Identities=17%  Similarity=0.169  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ....|+++|++|+||||+++.+..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            356799999999999999987754

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.23  E-value=0.00023  Score=49.44  Aligned_cols=24  Identities=13%  Similarity=0.027  Sum_probs=21.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.|+++|++|+||||+++.+...
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            356899999999999999988765

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.21  E-value=0.00013  Score=54.75  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|++|+|||||+|.+...
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHhccc
Confidence            6899999999999999999764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.20  E-value=0.00017  Score=49.39  Aligned_cols=20  Identities=20%  Similarity=0.250  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 029144            8 KCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~   27 (198)
                      -++++|++|+|||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            57899999999999999644

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.19  E-value=0.00023  Score=49.48  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |+|+|++|+|||||+++++..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.19  E-value=0.00023  Score=49.99  Aligned_cols=22  Identities=14%  Similarity=0.228  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++|++|+|||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5899999999999999988764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.15  E-value=0.00078  Score=50.54  Aligned_cols=20  Identities=35%  Similarity=0.665  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 029144            8 KCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~   27 (198)
                      -++++|++|+|||||++.+.
T Consensus       167 i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999998

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.15  E-value=0.00026  Score=50.62  Aligned_cols=22  Identities=9%  Similarity=0.241  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++|+|++|+|||||++.+.+.
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999988764

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.12  E-value=0.00029  Score=49.77  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++|++|+|||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999988764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.12  E-value=0.00029  Score=50.26  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|++|+|||||++.+.+.
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999988764

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.11  E-value=0.0003  Score=49.76  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      --|+++|++|+||||+++.+...
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            35889999999999999998865

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.08  E-value=0.0004  Score=49.05  Aligned_cols=24  Identities=13%  Similarity=0.066  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ....|+|+|++|+|||||++.+.+
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999987764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.06  E-value=0.00036  Score=49.15  Aligned_cols=24  Identities=25%  Similarity=0.313  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ..-|+++|++||||||+++.+...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999988753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.06  E-value=0.00042  Score=48.59  Aligned_cols=24  Identities=17%  Similarity=0.281  Sum_probs=20.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +.-.|+++|++|+||||+.+.+..
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            344799999999999999988764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.06  E-value=0.00046  Score=47.28  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..|++.|.+|+||||+.+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999876

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.05  E-value=0.00056  Score=47.95  Aligned_cols=26  Identities=12%  Similarity=0.112  Sum_probs=21.9

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..+...|++.|.+||||||+.+.+..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999988864

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.02  E-value=0.00039  Score=47.25  Aligned_cols=20  Identities=15%  Similarity=0.041  Sum_probs=18.5

Q ss_pred             eEEEEECCCCCCHHHHHHHH
Q 029144            7 IKCVTVGDGAVGKTCMLISY   26 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~   26 (198)
                      .-|++.|++||||||+.+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999988

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.02  E-value=0.00043  Score=47.21  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ..|+++|++|+||||+.+.+...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999887653

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.01  E-value=0.00046  Score=46.71  Aligned_cols=23  Identities=22%  Similarity=0.166  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+..
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            58899999999999998887654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.00  E-value=0.00044  Score=47.00  Aligned_cols=22  Identities=9%  Similarity=0.069  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .|++.|++||||||+.+.+...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999888643

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.99  E-value=0.00057  Score=47.90  Aligned_cols=25  Identities=12%  Similarity=0.302  Sum_probs=21.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ...+.|++.|.+|+||||+.+.+..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999988764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.99  E-value=0.00045  Score=47.88  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -++++|++|+||||+++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999998875

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.99  E-value=0.00045  Score=48.93  Aligned_cols=22  Identities=18%  Similarity=0.152  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988853

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.97  E-value=0.00048  Score=48.83  Aligned_cols=22  Identities=18%  Similarity=0.101  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988854

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.97  E-value=0.00061  Score=46.98  Aligned_cols=24  Identities=13%  Similarity=0.043  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +...|+++|.+||||||+.+.+..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999988863

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.96  E-value=0.00054  Score=49.67  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~   27 (198)
                      ...|+++|++|+||||+++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999998887

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.95  E-value=0.0007  Score=49.11  Aligned_cols=25  Identities=12%  Similarity=0.113  Sum_probs=22.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .++++|++.|++||||||+.+.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999988864

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.95  E-value=0.00058  Score=48.31  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +.|+++|+|||||+|...++..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999987764

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.94  E-value=0.00048  Score=49.74  Aligned_cols=22  Identities=23%  Similarity=0.188  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999877654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.94  E-value=0.00071  Score=47.35  Aligned_cols=25  Identities=24%  Similarity=0.117  Sum_probs=21.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +...|++.|.+||||||+.+.+...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            4568999999999999999888764

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.93  E-value=0.00065  Score=48.45  Aligned_cols=23  Identities=13%  Similarity=0.072  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ...|.++|++|+||||+.+.+..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999987754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.90  E-value=0.00052  Score=48.13  Aligned_cols=24  Identities=13%  Similarity=0.094  Sum_probs=20.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +..-|+++|++|+||||+.+.+..
T Consensus        24 ~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           24 KGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999987754

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.90  E-value=0.00059  Score=46.72  Aligned_cols=23  Identities=17%  Similarity=0.209  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-|++.|.+|+||||+.+.+...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999988763

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.90  E-value=0.00058  Score=47.63  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .++++|+.|+|||||++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            589999999999999987764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.90  E-value=0.001  Score=44.17  Aligned_cols=26  Identities=12%  Similarity=-0.074  Sum_probs=21.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      ....|++.|++|+|||++.+.+....
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            34579999999999999999887653

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.90  E-value=0.00081  Score=47.29  Aligned_cols=23  Identities=13%  Similarity=0.005  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ...|++.|.+||||||+.+.+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999988865

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.89  E-value=0.00069  Score=46.57  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ...|++.|.+|+||||+.+.+..
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHH
Confidence            45699999999999999988764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.89  E-value=0.0007  Score=47.32  Aligned_cols=21  Identities=19%  Similarity=0.273  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .|++.|.+||||||+.+.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999988765

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.88  E-value=0.0007  Score=49.30  Aligned_cols=27  Identities=15%  Similarity=0.116  Sum_probs=21.5

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ...+++.|+|.|.+||||||+.+.|..
T Consensus        18 ~~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           18 NGGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            345678899999999999999987754

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.88  E-value=0.00064  Score=47.68  Aligned_cols=22  Identities=18%  Similarity=0.157  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..|+++|.+|+||||+.+.+..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.88  E-value=0.00076  Score=46.72  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +...|++.|.+|+||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999988864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.86  E-value=0.00077  Score=47.93  Aligned_cols=24  Identities=21%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +.+.|+++|.+||||||+.+.+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999987754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.86  E-value=0.00086  Score=49.93  Aligned_cols=25  Identities=16%  Similarity=0.090  Sum_probs=21.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .+..-|++.|++|+||||+.+.+..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999998864

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.86  E-value=0.00045  Score=47.52  Aligned_cols=24  Identities=25%  Similarity=0.054  Sum_probs=16.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +...|++.|.+||||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999988864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.85  E-value=0.00063  Score=52.19  Aligned_cols=23  Identities=22%  Similarity=0.340  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|++|+|||||++.+.+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCS
T ss_pred             EEEEECCCCccHHHHHHHHhccc
Confidence            58999999999999999998754

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.85  E-value=0.00074  Score=46.43  Aligned_cols=24  Identities=25%  Similarity=0.198  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999877654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.85  E-value=0.0007  Score=49.05  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999998877653

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.84  E-value=0.00058  Score=48.95  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999877654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.84  E-value=0.00089  Score=46.37  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +..|++.|.+||||||+.+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999987754

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.83  E-value=0.00067  Score=46.43  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      +|+++|++|+||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999988754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.83  E-value=0.00083  Score=46.41  Aligned_cols=22  Identities=23%  Similarity=0.071  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..|++.|.+||||||+.+.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999987754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.83  E-value=0.00078  Score=46.31  Aligned_cols=23  Identities=17%  Similarity=0.062  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-++++|++|+|||||++++...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHh
Confidence            45889999999999999988864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.82  E-value=0.00081  Score=46.50  Aligned_cols=22  Identities=23%  Similarity=0.258  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..|++.|.+|+||||+.+.+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999987764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.82  E-value=0.00069  Score=48.46  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=20.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +...|+++|.+||||||+.+.+..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999988763

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.81  E-value=0.00074  Score=47.84  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999988764

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.81  E-value=0.00074  Score=48.05  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999887764

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.80  E-value=0.00079  Score=47.21  Aligned_cols=22  Identities=14%  Similarity=0.194  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .+|+++|++|+||||+.+.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4799999999999999988876

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.80  E-value=0.00076  Score=49.51  Aligned_cols=21  Identities=19%  Similarity=0.272  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .++++|+.|+||||+++.+.+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            589999999999999988765

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.80  E-value=0.00074  Score=49.60  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++|+.|+|||||++.+.+-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999887764

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.80  E-value=0.00083  Score=50.41  Aligned_cols=22  Identities=18%  Similarity=0.126  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      =.++|+|++|+|||||++.+.+
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhh
Confidence            3689999999999999987764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.79  E-value=0.00074  Score=49.95  Aligned_cols=23  Identities=17%  Similarity=0.387  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999998777643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.79  E-value=0.00084  Score=48.55  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999887764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.78  E-value=0.00088  Score=46.18  Aligned_cols=22  Identities=18%  Similarity=0.126  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..|+++|++|+||||+.+.+..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999988864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.78  E-value=0.00094  Score=47.03  Aligned_cols=24  Identities=17%  Similarity=-0.065  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +...|++.|.+||||||+.+.+..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999988764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.78  E-value=0.001  Score=47.15  Aligned_cols=24  Identities=13%  Similarity=0.113  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +.+.|+|.|.+||||||+.+.+..
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            357899999999999999988865

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.77  E-value=0.00073  Score=48.13  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +...|+++|++||||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999987753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.75  E-value=0.00082  Score=49.21  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999998877643

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.75  E-value=0.00086  Score=48.22  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999887764

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.75  E-value=0.00095  Score=48.44  Aligned_cols=22  Identities=14%  Similarity=0.098  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999887764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.75  E-value=0.00081  Score=49.50  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999998887643

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.74  E-value=0.00094  Score=48.60  Aligned_cols=22  Identities=18%  Similarity=0.108  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999887765

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.74  E-value=0.00087  Score=49.25  Aligned_cols=22  Identities=23%  Similarity=0.306  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            4789999999999999887764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.74  E-value=0.00074  Score=47.82  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999888764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.73  E-value=0.0012  Score=47.83  Aligned_cols=24  Identities=21%  Similarity=0.122  Sum_probs=20.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +..-|.++|+.|+|||||++.+.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999987765

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.72  E-value=0.0011  Score=44.92  Aligned_cols=22  Identities=14%  Similarity=0.128  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999988865

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.72  E-value=0.0009  Score=48.48  Aligned_cols=22  Identities=23%  Similarity=0.286  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999887764

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.72  E-value=0.00096  Score=48.62  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988774

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.71  E-value=0.0014  Score=49.39  Aligned_cols=25  Identities=20%  Similarity=0.076  Sum_probs=21.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ....-|+|+|++|+|||||++.+.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            3456799999999999999987765

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.71  E-value=0.001  Score=47.23  Aligned_cols=24  Identities=13%  Similarity=0.076  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +.+.|+++|.+||||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999987754

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.71  E-value=0.00096  Score=48.62  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            4789999999999999887764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.71  E-value=0.0012  Score=46.33  Aligned_cols=22  Identities=23%  Similarity=0.163  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +.|.++|++||||||+.+.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999988865

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.71  E-value=0.00096  Score=48.83  Aligned_cols=22  Identities=23%  Similarity=0.196  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999887764

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.69  E-value=0.00064  Score=48.77  Aligned_cols=23  Identities=17%  Similarity=0.150  Sum_probs=15.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHh-hC
Q 029144            7 IKCVTVGDGAVGKTCMLISYT-SN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~-~~   29 (198)
                      --++++|+.|+||||+++.+. ..
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            358999999999999999888 53

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.69  E-value=0.0014  Score=46.10  Aligned_cols=25  Identities=16%  Similarity=0.112  Sum_probs=21.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ....|+++|++|+||||+++.+...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            4567999999999999999888764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.69  E-value=0.0011  Score=48.90  Aligned_cols=22  Identities=14%  Similarity=0.265  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999988774

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.69  E-value=0.0012  Score=45.20  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999877654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.69  E-value=0.0013  Score=45.94  Aligned_cols=26  Identities=19%  Similarity=0.058  Sum_probs=22.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++..|+|.|.+||||||+.+.+...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            35678999999999999999888764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.68  E-value=0.0011  Score=48.64  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999887764

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.68  E-value=0.0012  Score=45.85  Aligned_cols=24  Identities=17%  Similarity=0.074  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +...|++.|.+||||||+.+.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999988764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.68  E-value=0.0012  Score=49.44  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|++|+|||||++.+.+..
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTC
T ss_pred             eEEEECCCCCcHHHHHHHhcccc
Confidence            57899999999999999998654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.68  E-value=0.0016  Score=48.62  Aligned_cols=24  Identities=17%  Similarity=0.047  Sum_probs=20.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHh
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~   27 (198)
                      .+...|.|+|++|+|||||++.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999997664

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.67  E-value=0.00098  Score=47.47  Aligned_cols=22  Identities=18%  Similarity=0.114  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++|++|+|||||++.+...
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.67  E-value=0.001  Score=48.55  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=21.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ....|+++|++|+||||+.+.+..
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999988764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.66  E-value=0.001  Score=49.07  Aligned_cols=23  Identities=17%  Similarity=0.148  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999998877653

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.65  E-value=0.0016  Score=45.66  Aligned_cols=25  Identities=16%  Similarity=0.050  Sum_probs=21.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .+..-|.++|++|+||||+++.+..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999987764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.65  E-value=0.0013  Score=46.96  Aligned_cols=22  Identities=14%  Similarity=0.104  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +.|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.65  E-value=0.0012  Score=48.92  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            57899999999999998877643

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.64  E-value=0.0011  Score=48.39  Aligned_cols=23  Identities=17%  Similarity=0.211  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999998877643

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.62  E-value=0.0018  Score=49.01  Aligned_cols=25  Identities=20%  Similarity=0.030  Sum_probs=21.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .+++-|.++|++||||||+++.+..
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999977653

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.62  E-value=0.0012  Score=48.73  Aligned_cols=22  Identities=18%  Similarity=0.259  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|++|+|||||++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            3999999999999999988763

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.62  E-value=0.0016  Score=46.83  Aligned_cols=24  Identities=17%  Similarity=0.235  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +...|+++|.+|+||||+.+.+..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999987764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.61  E-value=0.0012  Score=48.61  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            5789999999999999887754

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.59  E-value=0.0016  Score=47.71  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ...|++.|.+||||||+.+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45799999999999999988764

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.58  E-value=0.00061  Score=46.72  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++|+|++|+|||||++.+..-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999887754

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.58  E-value=0.0021  Score=44.38  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +...|+++|.+|+||||+.+.+..
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            456799999999999999987754

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.58  E-value=0.0017  Score=47.27  Aligned_cols=21  Identities=14%  Similarity=0.124  Sum_probs=19.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q 029144            7 IKCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~   27 (198)
                      ..|.|+|++|+||||+++.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999998876

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.58  E-value=0.001  Score=44.46  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|++|+|||||++.+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999888764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.57  E-value=0.0014  Score=47.58  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.57  E-value=0.0012  Score=50.90  Aligned_cols=24  Identities=13%  Similarity=0.220  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-+++|+|++|+|||||++.+.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999888764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.57  E-value=0.0016  Score=44.47  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=19.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ...+.++|.+|+|||||+.++..
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34688999999999999988875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.55  E-value=0.002  Score=47.35  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999998877653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.54  E-value=0.0017  Score=44.85  Aligned_cols=21  Identities=19%  Similarity=0.020  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .|++.|.+||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988765

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.51  E-value=0.0015  Score=45.46  Aligned_cols=23  Identities=13%  Similarity=0.066  Sum_probs=20.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ...|++.|.+|+||||+.+.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999988764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.50  E-value=0.0016  Score=50.05  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .++|+|+.|+||||+++.+.+
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999988865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.50  E-value=0.0017  Score=47.35  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -|+|+|++|+|||||.+.+..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988864

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.50  E-value=0.0016  Score=48.83  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=19.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~   27 (198)
                      .-.|+++|+.|+||||+++.+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            4578999999999999998776

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.46  E-value=0.0019  Score=46.00  Aligned_cols=20  Identities=15%  Similarity=0.147  Sum_probs=17.2

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q 029144            9 CVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~   28 (198)
                      |+++|+|||||+|....+..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999987764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.46  E-value=0.0015  Score=44.63  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            447899999999999999877653

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.45  E-value=0.0019  Score=43.86  Aligned_cols=22  Identities=18%  Similarity=0.107  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..|++.|.+||||||+.+.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999987764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.43  E-value=0.0019  Score=44.44  Aligned_cols=21  Identities=29%  Similarity=0.267  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .|+++|.+|+||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999988764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.43  E-value=0.0023  Score=47.45  Aligned_cols=25  Identities=16%  Similarity=0.110  Sum_probs=21.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .+++.|+|.|.+||||||+.+.|..
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999988763

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.42  E-value=0.0012  Score=49.58  Aligned_cols=22  Identities=23%  Similarity=0.229  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        82 ~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             EEEEESSSCHHHHHHHHHHTTS
T ss_pred             EEEEECCCCchHHHHHHHHHcC
Confidence            6899999999999999877654

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.42  E-value=0.0031  Score=47.29  Aligned_cols=23  Identities=26%  Similarity=0.128  Sum_probs=19.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .--++++|+.|+||||+++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            44789999999999999977753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.41  E-value=0.0017  Score=49.78  Aligned_cols=23  Identities=22%  Similarity=0.296  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999998877653

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.40  E-value=0.0022  Score=46.16  Aligned_cols=24  Identities=13%  Similarity=0.151  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +++.|++.|++|+||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999987763

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.39  E-value=0.0021  Score=47.43  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            4899999999999999988764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.39  E-value=0.00072  Score=47.71  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -|+|.|.+|+||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999988764

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.39  E-value=0.002  Score=49.35  Aligned_cols=23  Identities=22%  Similarity=0.185  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -++++|+.|+|||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999998877643

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.39  E-value=0.0019  Score=48.13  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5789999999999999887654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.38  E-value=0.002  Score=49.79  Aligned_cols=21  Identities=19%  Similarity=0.272  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .++++|+.|+||||+++.+.+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999988875

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.38  E-value=0.0025  Score=43.16  Aligned_cols=22  Identities=18%  Similarity=0.132  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      -.|++.|.+||||||+.+.|..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999987754

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.37  E-value=0.0031  Score=47.82  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=20.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +.--++++|+.|+||||+++.+.+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999987763

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.37  E-value=0.0026  Score=47.75  Aligned_cols=24  Identities=21%  Similarity=0.068  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +..-|.|+|+.|+|||||++.+.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999987765

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.36  E-value=0.0023  Score=45.54  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999988874

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.36  E-value=0.0022  Score=49.28  Aligned_cols=22  Identities=23%  Similarity=0.288  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++|+.|+|||||++.+.+-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            4789999999999999887764

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.35  E-value=0.0025  Score=45.47  Aligned_cols=24  Identities=13%  Similarity=0.094  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.+++.|++|+|||++++.+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999887653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.35  E-value=0.0022  Score=49.25  Aligned_cols=23  Identities=13%  Similarity=0.187  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            47899999999999998777643

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.35  E-value=0.0022  Score=48.72  Aligned_cols=23  Identities=22%  Similarity=0.240  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -.++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999888754

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.35  E-value=0.0023  Score=49.24  Aligned_cols=23  Identities=17%  Similarity=0.236  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999998877643

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.35  E-value=0.0023  Score=49.52  Aligned_cols=23  Identities=26%  Similarity=0.278  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            47899999999999998887643

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.33  E-value=0.0019  Score=49.63  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+-.
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999999887653

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.32  E-value=0.0027  Score=46.20  Aligned_cols=24  Identities=21%  Similarity=0.210  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +-.+++.|++|+||||+++.+...
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999888753

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.32  E-value=0.002  Score=48.95  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999888653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.32  E-value=0.0023  Score=43.92  Aligned_cols=21  Identities=19%  Similarity=0.088  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -.+|+|+.|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999988764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.30  E-value=0.0024  Score=49.28  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -++++|+.|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            47899999999999998877643

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.30  E-value=0.0025  Score=49.18  Aligned_cols=22  Identities=27%  Similarity=0.223  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++|+.|+|||||++.+.+-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            4789999999999999887764

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.29  E-value=0.0035  Score=42.90  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ...|+++|.+|+||||+.+.+..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999987765

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.27  E-value=0.0031  Score=44.04  Aligned_cols=23  Identities=26%  Similarity=0.252  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -.+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999887754

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.27  E-value=0.0025  Score=49.96  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++|+|+.|+||||+++.+.+.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999988764

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.26  E-value=0.0041  Score=44.63  Aligned_cols=25  Identities=16%  Similarity=0.023  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +..-|++.|.+|+||||+++.+...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567999999999999999887653

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.22  E-value=0.0017  Score=48.39  Aligned_cols=27  Identities=15%  Similarity=0.239  Sum_probs=18.1

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      |+.. .+-|.|.|++||||||+.+.|..
T Consensus         1 Ms~~-~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            1 MSKK-HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             -CTT-SCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCC-ceEEEEECCCCCCHHHHHHHHHH
Confidence            6654 45699999999999999977653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.21  E-value=0.0044  Score=47.56  Aligned_cols=23  Identities=26%  Similarity=0.128  Sum_probs=19.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .--|+++|+.|+||||++..+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            45789999999999999977753

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.21  E-value=0.0032  Score=45.15  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +..-|++.|+.|+||||+++.+.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3467999999999999999877654

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.18  E-value=0.0044  Score=43.70  Aligned_cols=24  Identities=21%  Similarity=0.241  Sum_probs=20.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +...|+++|.+|+||||+.+.+..
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999987754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.16  E-value=0.0034  Score=44.28  Aligned_cols=21  Identities=24%  Similarity=0.151  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999998876

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.14  E-value=0.0021  Score=49.19  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++|+.|+|||||++.+.+-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            4789999999999999887764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.13  E-value=0.0029  Score=50.93  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.||||||+++.+.+-.
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999887654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.13  E-value=0.0036  Score=44.86  Aligned_cols=22  Identities=18%  Similarity=0.135  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999988874

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.12  E-value=0.0048  Score=49.28  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=19.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .--|+|+|+.|+|||||++.+.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            44689999999999999977753

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.11  E-value=0.0031  Score=46.92  Aligned_cols=22  Identities=9%  Similarity=0.173  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++|+|++|+|||||+..+...
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999877654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.10  E-value=0.0037  Score=44.43  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -+++.|++|+||||+++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.10  E-value=0.0032  Score=45.88  Aligned_cols=22  Identities=23%  Similarity=0.043  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      -.|+++|++|+||||+.+.+..
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999987754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.10  E-value=0.0044  Score=46.14  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..|++.|.+|+||||+.+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999988875

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.09  E-value=0.0043  Score=41.39  Aligned_cols=19  Identities=21%  Similarity=0.412  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029144            9 CVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~   27 (198)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4799999999999998765

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.08  E-value=0.0039  Score=43.71  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+++.|++|+|||++++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999887653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.08  E-value=0.0032  Score=48.87  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        49 ~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5789999999999999877753

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.07  E-value=0.0033  Score=44.29  Aligned_cols=22  Identities=23%  Similarity=0.262  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      -.+++.|+||+||||++..+..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999877765

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.06  E-value=0.0043  Score=45.77  Aligned_cols=24  Identities=17%  Similarity=0.133  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.+++.|++|+|||++++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456999999999999999988754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.05  E-value=0.0041  Score=46.33  Aligned_cols=25  Identities=12%  Similarity=-0.104  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+.-+++.|++|+|||+|++.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456788899999999999888754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.0032  Score=50.01  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++|+|+.|+|||||++.+.+-
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            6899999999999999887754

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.02  E-value=0.0044  Score=45.01  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.+++.|++|+|||++++.+...
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999888753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.02  E-value=0.0045  Score=45.97  Aligned_cols=24  Identities=17%  Similarity=0.130  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.+++.|++|+|||++++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999988763

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.01  E-value=0.0057  Score=46.18  Aligned_cols=27  Identities=26%  Similarity=0.293  Sum_probs=20.5

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      |+... ..|+|+|++|+|||||...+..
T Consensus         1 ~~~m~-~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            1 MSSLP-PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             --CCC-EEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCC-cEEEEECCCCCCHHHHHHHHHH
Confidence            44432 4699999999999999988764

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.00  E-value=0.0052  Score=46.75  Aligned_cols=22  Identities=36%  Similarity=0.365  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .-|+|+|++|||||||...+..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4689999999999999987764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.99  E-value=0.0043  Score=47.46  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      ++.++|+.|+|||||++.+.+..
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            78999999999999998888764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.98  E-value=0.0031  Score=47.62  Aligned_cols=24  Identities=21%  Similarity=0.163  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      --++|+|..|+|||||++.+.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            357899999999999999998653

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.95  E-value=0.0021  Score=49.30  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999998877643

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.95  E-value=0.0056  Score=45.66  Aligned_cols=23  Identities=17%  Similarity=0.301  Sum_probs=19.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ...+++.|++|+|||++++.+..
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            44799999999999999975543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.93  E-value=0.0059  Score=42.59  Aligned_cols=24  Identities=13%  Similarity=0.108  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+.|.+.|..||||||+.+.|...
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            568999999999999999887653

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.92  E-value=0.0048  Score=46.13  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -.|++.|++|+|||+|++.+...
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHHH
Confidence            46999999999999999988764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.88  E-value=0.0051  Score=47.57  Aligned_cols=23  Identities=17%  Similarity=0.028  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .-.++++|++|+|||||++.+.+
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34789999999999999988875

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.87  E-value=0.0051  Score=46.37  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -.+++.|++|+|||+|++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999887753

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.86  E-value=0.007  Score=47.43  Aligned_cols=25  Identities=20%  Similarity=0.142  Sum_probs=21.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ...-|+++|.+|+||||+.+++...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456899999999999999998753

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.84  E-value=0.0078  Score=42.03  Aligned_cols=21  Identities=19%  Similarity=0.191  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .|.+.|++|+||||+.+.+..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999987754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.83  E-value=0.0079  Score=44.12  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=21.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ..-.+++.|++|+|||++++.+...
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4568999999999999999888764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.81  E-value=0.0073  Score=43.37  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=20.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +...|.++|.+|+||||+.+.+..
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999987764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.80  E-value=0.0083  Score=42.86  Aligned_cols=28  Identities=14%  Similarity=-0.018  Sum_probs=21.1

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      |...+..-|++.|..|+||||+++.+..
T Consensus        16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           16 TQGPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3345667899999999999999977653

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.77  E-value=0.0055  Score=45.19  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999987764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.73  E-value=0.0057  Score=46.85  Aligned_cols=24  Identities=21%  Similarity=0.077  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.+++.|++|+|||||++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999888753

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.72  E-value=0.0063  Score=48.02  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      +++++|++|+|||||++.+.+..
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            68999999999999998887754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.71  E-value=0.007  Score=42.40  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      ..|+++|++|+|||||...+....
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468999999999999999887653

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.70  E-value=0.0069  Score=45.04  Aligned_cols=24  Identities=21%  Similarity=0.176  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.+++.|++|+|||++++.+...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999887653

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.68  E-value=0.0064  Score=43.65  Aligned_cols=21  Identities=19%  Similarity=0.207  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999877654

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.68  E-value=0.011  Score=45.24  Aligned_cols=23  Identities=17%  Similarity=0.213  Sum_probs=19.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~   27 (198)
                      ...+|+++|++|+||||+.+.+.
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la   45 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELC   45 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHH
Confidence            34689999999999999996554

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.67  E-value=0.01  Score=48.16  Aligned_cols=23  Identities=17%  Similarity=0.190  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999887643

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.67  E-value=0.0069  Score=46.64  Aligned_cols=19  Identities=21%  Similarity=0.410  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029144            9 CVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~   27 (198)
                      .+|+|+.|+|||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5699999999999998876

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.67  E-value=0.0069  Score=48.30  Aligned_cols=21  Identities=14%  Similarity=0.357  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -++++|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            578999999999999987764

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.65  E-value=0.0078  Score=46.24  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+++.|++|+||||+++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999888764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.62  E-value=0.0081  Score=45.38  Aligned_cols=23  Identities=13%  Similarity=0.206  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -.|++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            47999999999999999988764

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=95.61  E-value=0.0069  Score=45.23  Aligned_cols=22  Identities=27%  Similarity=0.241  Sum_probs=18.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~   27 (198)
                      .-.|+++|+.|+||||++..+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3478999999999999997664

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.61  E-value=0.0081  Score=45.29  Aligned_cols=24  Identities=13%  Similarity=0.159  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.|++.|++|+|||++++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            347999999999999999988754

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.58  E-value=0.0088  Score=44.59  Aligned_cols=23  Identities=22%  Similarity=0.254  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            36999999999999999877653

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.58  E-value=0.0037  Score=41.26  Aligned_cols=24  Identities=8%  Similarity=0.041  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ...|++.|++|+|||++.+.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            346999999999999999766543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.58  E-value=0.0063  Score=46.31  Aligned_cols=21  Identities=14%  Similarity=0.224  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++++.|++|+||||+++.+.+
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999987766

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=95.58  E-value=0.029  Score=44.33  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=19.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~   27 (198)
                      +..-|.|+|..++|||+|+|.++
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            34567799999999999999654

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.57  E-value=0.0097  Score=42.68  Aligned_cols=23  Identities=13%  Similarity=0.183  Sum_probs=19.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .+++.++|++||||||+...+..
T Consensus         8 ~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            8 HMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             -CEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccceeeECCCCCCHHHHHHHHHH
Confidence            57899999999999999987754

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=95.57  E-value=0.013  Score=43.97  Aligned_cols=22  Identities=23%  Similarity=0.140  Sum_probs=18.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~   27 (198)
                      .--|+++|++|+||||++..+.
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA  125 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLA  125 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHH
Confidence            4468999999999999997665

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.56  E-value=0.006  Score=44.58  Aligned_cols=25  Identities=24%  Similarity=0.214  Sum_probs=21.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +...|++.|..|+||||+++.+...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4578999999999999999877643

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.54  E-value=0.0072  Score=49.49  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhc
Confidence            6899999999999999887664

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.52  E-value=0.0084  Score=47.10  Aligned_cols=23  Identities=17%  Similarity=0.248  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -.|++.|+||+|||+|++++.+.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999988763

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.52  E-value=0.0083  Score=45.56  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ++++.|++|+||||+++.+...
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999887754

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.52  E-value=0.0086  Score=41.26  Aligned_cols=21  Identities=14%  Similarity=0.213  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      ++|+|.++||||++..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999998854

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.51  E-value=0.01  Score=42.71  Aligned_cols=24  Identities=25%  Similarity=0.206  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ..-|++-|..|+||||+++.+...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999887653

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.48  E-value=0.0091  Score=45.10  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++|.|++|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            5889999999999999988764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.45  E-value=0.012  Score=47.79  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -++++|+.|+|||||++.+.+..
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999998887643

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.45  E-value=0.011  Score=40.37  Aligned_cols=24  Identities=13%  Similarity=0.379  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .-|++.|++|+||||+...+....
T Consensus        17 ~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            358999999999999999888753

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.45  E-value=0.0094  Score=46.90  Aligned_cols=24  Identities=17%  Similarity=0.160  Sum_probs=21.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +-.|++.|+||+|||+|++++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999988764

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.44  E-value=0.025  Score=42.50  Aligned_cols=43  Identities=12%  Similarity=0.232  Sum_probs=25.4

Q ss_pred             cEEEEEEECCChhh-HHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           79 DVFLLAFSLISKAS-YENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        79 ~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      ..-++++|--+.-+ -... ..++..+.....+.++|+..|..+.
T Consensus       105 ~~~vliiDEi~~l~~~~~~-~~L~~~le~~~~~~~iI~~~n~~~~  148 (324)
T 3u61_B          105 RQKVIVIDEFDRSGLAESQ-RHLRSFMEAYSSNCSIIITANNIDG  148 (324)
T ss_dssp             CEEEEEEESCCCGGGHHHH-HHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred             CCeEEEEECCcccCcHHHH-HHHHHHHHhCCCCcEEEEEeCCccc
Confidence            56677777555433 2222 4555555554456788887777654

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.44  E-value=0.012  Score=48.24  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999887764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.013  Score=48.28  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            5799999999999999988764

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.42  E-value=0.011  Score=41.59  Aligned_cols=19  Identities=21%  Similarity=0.412  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029144            9 CVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~   27 (198)
                      .+|+|+.|+|||||+.++.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5789999999999997764

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.41  E-value=0.0092  Score=47.52  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=19.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .-+++++|++|+|||++++.+..
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHH
Confidence            44789999999999999987754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.41  E-value=0.0087  Score=45.77  Aligned_cols=23  Identities=17%  Similarity=0.110  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -+.|+|++|+|||||+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999888653

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.40  E-value=0.01  Score=46.78  Aligned_cols=24  Identities=17%  Similarity=0.137  Sum_probs=21.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +-.|++.|+||+|||+|++++.+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999988764

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.39  E-value=0.0094  Score=42.11  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=20.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++.|.+.|.+|+||||+.+.+..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999987754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.39  E-value=0.01  Score=45.08  Aligned_cols=22  Identities=23%  Similarity=0.380  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ++++.|++|+||||+++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999877653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.37  E-value=0.0044  Score=45.30  Aligned_cols=22  Identities=23%  Similarity=0.302  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+++.|++|+|||++++.+...
T Consensus        46 ~vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4899999999999999888753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.35  E-value=0.01  Score=45.47  Aligned_cols=25  Identities=16%  Similarity=0.085  Sum_probs=20.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ..-.+++.|++|+|||++++.+...
T Consensus        43 ~~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           43 KPSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999887753

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.33  E-value=0.01  Score=45.37  Aligned_cols=23  Identities=17%  Similarity=0.323  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -.+++.|++|+|||++++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999888754

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.31  E-value=0.0097  Score=45.03  Aligned_cols=22  Identities=14%  Similarity=0.184  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++|.|++|+|||||++.+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            5889999999999999888753

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.30  E-value=0.011  Score=45.29  Aligned_cols=23  Identities=13%  Similarity=0.198  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -.|++.|++|+|||+|++.+...
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~  107 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATE  107 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHHH
Confidence            36999999999999999888764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.30  E-value=0.016  Score=43.43  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=19.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..-|+|+|++|+|||||...+..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            34578999999999999988864

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.29  E-value=0.0085  Score=49.23  Aligned_cols=22  Identities=27%  Similarity=0.259  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus       383 ~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             EEEEECCTTSSTTHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999877654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.28  E-value=0.015  Score=47.77  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58999999999999999887643

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.28  E-value=0.011  Score=44.61  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.|++.|++|+|||++++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            347999999999999999988654

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.27  E-value=0.012  Score=42.88  Aligned_cols=25  Identities=12%  Similarity=0.131  Sum_probs=21.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      ...|++.|++|+|||++++.+....
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhc
Confidence            3579999999999999999887654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.27  E-value=0.013  Score=43.97  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.+++.|++|+|||+|+..+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999777653

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.23  E-value=0.012  Score=45.74  Aligned_cols=24  Identities=17%  Similarity=0.142  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +-.|++.|+||+|||.|++++.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            447999999999999999988764

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.22  E-value=0.013  Score=44.81  Aligned_cols=24  Identities=21%  Similarity=0.099  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.|++.|++|+|||+|++.+...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.21  E-value=0.011  Score=47.89  Aligned_cols=23  Identities=17%  Similarity=0.195  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+-.
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999887653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.21  E-value=0.013  Score=47.50  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999888753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.17  E-value=0.014  Score=43.80  Aligned_cols=22  Identities=32%  Similarity=0.318  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -|+|+|++|+|||||...+...
T Consensus         5 ~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCcCCHHHHHHHHHHh
Confidence            5889999999999999888753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.15  E-value=0.014  Score=48.07  Aligned_cols=23  Identities=22%  Similarity=0.248  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++.+.+..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999887653

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.15  E-value=0.013  Score=44.99  Aligned_cols=24  Identities=17%  Similarity=0.076  Sum_probs=20.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.+++.|++|+|||++++.+...
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999888753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.15  E-value=0.0074  Score=49.36  Aligned_cols=22  Identities=18%  Similarity=0.157  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999765543

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.14  E-value=0.014  Score=44.24  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-|+|+|+.|+|||||...+...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999888753

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.13  E-value=0.013  Score=46.33  Aligned_cols=22  Identities=27%  Similarity=0.250  Sum_probs=19.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      -.+++.|++|+|||||++.+.+
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999987765

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.13  E-value=0.014  Score=45.01  Aligned_cols=24  Identities=21%  Similarity=0.250  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ...+++.|++|+|||++++.+...
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999888753

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.11  E-value=0.014  Score=46.62  Aligned_cols=23  Identities=22%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -.|+++|++|+|||+|++.+.+.
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            35999999999999999988763

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.09  E-value=0.013  Score=46.97  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|++|+|||+|++.+.+.
T Consensus        66 GvLL~GppGtGKTtLaraIa~~   87 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGE   87 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999988764

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.09  E-value=0.014  Score=47.32  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .++++|++|+|||||++.+..
T Consensus       110 ~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-50
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-44
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-43
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-42
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-41
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-39
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-39
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	5e-39
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-38
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-36
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-36
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	8e-36
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	7e-35
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	2e-34
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	4e-34
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	5e-34
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	1e-33
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-33
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-33
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-31
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	5e-30
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-29
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	3e-29
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	3e-29
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-28
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	5e-28
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	7e-28
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	8e-28
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-26
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-26
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-26
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	4e-26
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	9e-26
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-23
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	6e-23
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	3e-22
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	4e-22
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-21
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-21
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-20
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-18
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-18
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-18
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	1e-17
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	1e-17
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-17
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-17
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	3e-16
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	4e-16
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-15
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-15
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-15
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-15
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	9e-13
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-08
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	5e-07

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (401), Expect = 3e-50
 Identities = 99/194 (51%), Positives = 134/194 (69%), Gaps = 8/194 (4%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQED
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 63

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD 
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 123

Query: 127 QFLADHPGAVPIT--TAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184
             +                E+L + + A  Y+ECS+ TQ+ +K VFD AI   L+PP+ K
Sbjct: 124 STIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPK 183

Query: 185 KKKKRKAQKACSIL 198
           K ++      C +L
Sbjct: 184 KSRR------CVLL 191

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (362), Expect = 2e-44
 Identities = 116/181 (64%), Positives = 137/181 (75%), Gaps = 2/181 (1%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
           + + IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  VNLGLWDTA
Sbjct: 2   SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61

Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDL 122
           GQEDY+RLRPLSY   DV L+ FSL+S AS+ENV  KW PE+RH+ P  PIILVGTKLDL
Sbjct: 62  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121

Query: 123 RDDKQFLAD--HPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           RDDK  +         PIT  QG  + K IGA  Y+ECS+ TQ+ +K VFD AI+ VL P
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181

Query: 181 P 181
           P
Sbjct: 182 P 182

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  141 bits (355), Expect = 2e-43
 Identities = 97/181 (53%), Positives = 133/181 (73%), Gaps = 2/181 (1%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
             +  +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DT
Sbjct: 5   PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDT 64

Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AGQEDY+RLRPLSY   DVFL+ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++D
Sbjct: 65  AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQID 124

Query: 122 LRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           LRDD + L   +     PI   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI  +L 
Sbjct: 125 LRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 184

Query: 180 P 180
           P
Sbjct: 185 P 185

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  137 bits (346), Expect = 4e-42
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGK+C+L+ +  + F   ++ T+  +F    V ++G  V L +WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YRGA   +L + +  + ++ N+ + +     H      ++LVG K D+   
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
                        T  QGE L K +G P +IE S+K   NV  +F    K++ +
Sbjct: 123 VV-----------TADQGEALAKELGIP-FIESSAKNDDNVNEIFFTLAKLIQE 164

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  135 bits (341), Expect = 3e-41
 Identities = 88/175 (50%), Positives = 116/175 (66%), Gaps = 2/175 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGDGA GKTC+LI  + + FP  YVPTVF+N+ A++ VDG  V L LWDTAG ED
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLED 62

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE++H+ P VPIILVG K DLR+D+
Sbjct: 63  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 122

Query: 127 QFLADH--PGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
               +       P+   +G ++   IGA  Y+ECS+KT+  V+ VF+ A +  LQ
Sbjct: 123 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  131 bits (330), Expect = 1e-39
 Identities = 66/176 (37%), Positives = 99/176 (56%), Gaps = 3/176 (1%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V VGD   GKT +L  +  + FP +YVPTVF+N++A+  +D   + L LWDT+G   
Sbjct: 3   CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+ +RPLSY  +D  L+ F +    + ++V KKW  E++ + P   ++LVG K DLR D 
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 127 QFLADHP--GAVPITTAQGEELRKLIGAPVYIECSSKTQQN-VKAVFDAAIKVVLQ 179
             L +       P++  QG  + K IGA  YIECS+   +N V+ +F  A    + 
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 178

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  131 bits (330), Expect = 2e-39
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 14/194 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +G+  VGK+C+L+ ++ +T+  DY+ T+  +F    V +DG TV L +WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YRG+   ++ + +  + S+  V        R+    V  +LVG K DL+D 
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ--PPKN 183
           +    D            +E       P ++E S+    NV+  F    + + +    +N
Sbjct: 127 RVVEYD----------VAKEFADANKMP-FLETSALDSTNVEDAFLTMARQIKESMSQQN 175

Query: 184 KKKKKRKAQKACSI 197
             +  +K +   ++
Sbjct: 176 LNETTQKKEDKGNV 189

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 5e-39
 Identities = 47/175 (26%), Positives = 86/175 (49%), Gaps = 13/175 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
            K V +G+  VGKTC++  +T   FP     T+  +F    V ++G  V L +WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YR A+  +L + +  + S+  + +      ++ +  V  +LVG K+DL + 
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVF-DAAIKVVLQ 179
           ++           +  + EE  +      Y+E S+K   NV+ +F D A +++ +
Sbjct: 126 REV----------SQQRAEEFSEAQDMY-YLETSAKESDNVEKLFLDLACRLISE 169

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (320), Expect = 4e-38
 Identities = 46/174 (26%), Positives = 86/174 (49%), Gaps = 12/174 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQE 65
            K + +GD  VGKTC+L  ++ + F + ++ T+  +F    + +DG  + L +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YRGA   +L + + ++ S++N+         H +  V  +++G K D+ D 
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +Q           +  +GE+L    G   ++E S+K   NV+  F    + +  
Sbjct: 127 RQV----------SKERGEKLALDYGIK-FMETSAKANINVENAFFTLARDIKA 169

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 2e-36
 Identities = 48/170 (28%), Positives = 80/170 (47%), Gaps = 12/170 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
            K + +GD  VGK+C+L  +T   F  D   T+   F   ++ V G  + L +WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YRGA   L+ + +  +++Y +++           P   IIL+G K DL   
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
           +            T  + ++  +  G   ++E S+KT +NV+  F  A K
Sbjct: 125 RDV----------TYEEAKQFAEENGLL-FLEASAKTGENVEDAFLEAAK 163

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (306), Expect = 4e-36
 Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 12/179 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K V +GD  VGK+ +L  +T N F  +   T+   F+   + VDG T+   +WDTAGQE 
Sbjct: 6   KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y R+    YRGA   LL + +    +YENV +       H    + I+LVG K DLR  +
Sbjct: 66  YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR 125

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNKK 185
                        T +     +      +IE S+    NV+  F   +  + +    K+
Sbjct: 126 AV----------PTDEARAFAEKNNLS-FIETSALDSTNVEEAFKNILTEIYRIVSQKQ 173

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 8e-36
 Identities = 60/195 (30%), Positives = 85/195 (43%), Gaps = 28/195 (14%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-----------DGSTVN 55
           IK + +GD  VGKT  L  YT N F   ++ TV  +F    VV               V+
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 56  LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPII 114
           L LWDTAGQE +  L    +R A  FLL F L S+ S+ NV         +       I+
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 115 LVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 174
           L+G K DL D ++              Q  EL    G P Y E S+ T QNV+   +  +
Sbjct: 126 LIGNKADLPDQREV----------NERQARELADKYGIP-YFETSAATGQNVEKAVETLL 174

Query: 175 KVVLQPPKNKKKKKR 189
            +++     K+ ++ 
Sbjct: 175 DLIM-----KRMEQC 184

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  119 bits (298), Expect = 7e-35
 Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K + +G+ +VGKT  L  Y  ++F   +V TV  +F    +  +   + L +WDTAGQE 
Sbjct: 7   KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y  +    YRGA  F+L + + ++ S+  V         +      ++LVG K D+ D++
Sbjct: 67  YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER 126

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
              ++             +L   +G   + E S+K   NVK  F+  + V+ +
Sbjct: 127 VVSSERG----------RQLADHLGFE-FFEASAKDNINVKQTFERLVDVICE 168

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 2e-34
 Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 12/179 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K + +G+   GK+C+L  +    F  D   T+   F S  + V G  V L +WDTAGQE 
Sbjct: 7   KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +  +    YRGA   LL + + S+ +Y  +           +  + IIL G K DL  D+
Sbjct: 67  FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADR 126

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNKK 185
           +                    +      ++E S+ T +NV+  F    + +L   ++ +
Sbjct: 127 EVTFLEA----------SRFAQENELM-FLETSALTGENVEEAFVQCARKILNKIESGE 174

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 4e-34
 Identities = 48/173 (27%), Positives = 83/173 (47%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
           K + +GD  VGK+C+L+ +T   F   +  T+   F A +V +DG  + L +WDTAGQE 
Sbjct: 5   KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +  +    YRGA   LL + +  + ++ ++        +H +  + I+L+G K DL   +
Sbjct: 65  FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR 124

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
               +           GE   +  G   ++E S+KT  NV+  F    K + +
Sbjct: 125 DVKREE----------GEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYR 166

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 5e-34
 Identities = 48/170 (28%), Positives = 89/170 (52%), Gaps = 12/170 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V +G G VGK+ + + + + TF   Y PT+ D +   + VD S   L + DTAG E 
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQ 63

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
           +  +R L  +    F+L +SL+++ S++++       +R      VP+ILVG K+DL  +
Sbjct: 64  FASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
           ++           ++++G  L +  G P ++E S+K++  V  +F   ++
Sbjct: 124 REV----------SSSEGRALAEEWGCP-FMETSAKSKTMVDELFAEIVR 162

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 1e-33
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 13/174 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQE 65
           K + VGD  VGKTC+L+ +    F    ++ TV  +F +  + VDG  V L +WDTAGQE
Sbjct: 8   KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  +    YR A   LL + + +KAS++N+         +    V ++L+G K+D   +
Sbjct: 68  RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           +           +    GE+L K  G P ++E S+KT  NV   F A  K + +
Sbjct: 128 R----------VVKREDGEKLAKEYGLP-FMETSAKTGLNVDLAFTAIAKELKR 170

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 2e-33
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 12/169 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQED 66
           K V +G+ +VGKT ++  +  ++F   Y  T+  +F +  +  +  T+ L LWDTAGQE 
Sbjct: 2   KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +  L P   R +   ++ + + +  S++   K            V I+LVG K DL D +
Sbjct: 62  FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR 121

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
           Q   +            E   K +    +IE S+K   NVK +F     
Sbjct: 122 QVSIEEG----------ERKAKELNVM-FIETSAKAGYNVKQLFRRVAA 159

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 3e-33
 Identities = 39/176 (22%), Positives = 82/176 (46%), Gaps = 12/176 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQE 65
           +K + +G+  VGK+ +L+ +T +TF  +   T+  D     + VDG+   L +WDTAGQE
Sbjct: 8   LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  L P  YRGA   +L + +  + ++  +         +      + ++      +++
Sbjct: 68  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 127

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 181
           ++          +   +G +  +      +IE S+KT   V+  F+  ++ ++Q P
Sbjct: 128 RE----------VDRNEGLKFARKHSML-FIEASAKTCDGVQCAFEELVEKIIQTP 172

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 1e-31
 Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 18/182 (9%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTA 62
           S   K + +GDG VGK+ ++  Y +N F T    T+   F    + VDG  V + +WDTA
Sbjct: 4   SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63

Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVG 117
           GQE +  LR   YRG+D  LL FS+    S++N+   W  E  +YA        P +++G
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILG 122

Query: 118 TKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 177
            K+D+ + +            +T + +   +  G   Y E S+K   NV A F+ A++ V
Sbjct: 123 NKIDISERQV-----------STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

Query: 178 LQ 179
           L 
Sbjct: 172 LA 173

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (266), Expect = 5e-30
 Identities = 54/187 (28%), Positives = 86/187 (45%), Gaps = 18/187 (9%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S   K V VG G VGK+ + I +  + F +DY PT+ D+++    VDG    L + DTAG
Sbjct: 4   SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAG 63

Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122
           QE++  +R    R    FLL F++  + S+  V K +   LR       P++LVG K DL
Sbjct: 64  QEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL 123

Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182
              +Q             ++            Y E S+K + NV   F+  ++ V     
Sbjct: 124 ESQRQV----------PRSEASAFGASHHVA-YFEASAKLRLNVDEAFEQLVRAV----- 167

Query: 183 NKKKKKR 189
            +K +++
Sbjct: 168 -RKYQEQ 173

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 3e-29
 Identities = 57/174 (32%), Positives = 92/174 (52%), Gaps = 15/174 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VG G VGK+ + I    N F  +Y PT+ D++   VV+DG T  L + DTAGQE+Y
Sbjct: 5   KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDD 125
           + +R    R  + FL  F++ +  S+E++  ++  +++       VP++LVG K DL   
Sbjct: 65  SAMRDQYMRTGEGFLCVFAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAAR 123

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
                         + Q ++L +  G P YIE S+KT+Q V+  F   ++ + Q
Sbjct: 124 TV-----------ESRQAQDLARSYGIP-YIETSAKTRQGVEDAFYTLVREIRQ 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  104 bits (260), Expect = 3e-29
 Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 14/173 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + VG G VGK+ + + +  + F  DY PT  D++   VV+DG  V + + DTAGQEDY
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDD 125
             +R   +R  + FL  FS I++         +  ++        VP +LVG K DL D 
Sbjct: 66  AAIRDNYFRSGEGFLCVFS-ITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVL 178
           +Q           +  + +          Y+E S+KT+ NV  VF   ++ + 
Sbjct: 125 RQV----------SVEEAKNRADQWNVN-YVETSAKTRANVDKVFFDLMREIR 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 3e-29
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQED 66
           K V +G+ AVGK+ +++ +    F      T+     +  V +D +TV   +WDTAGQE 
Sbjct: 8   KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           Y+ L P+ YRGA   ++ + + ++ S+           R  +P + I L G K DL + +
Sbjct: 68  YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKR 127

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
                          + +          ++E S+KT  NV  +F A  K + +
Sbjct: 128 AV----------DFQEAQSYADDNSLL-FMETSAKTSMNVNEIFMAIAKKLPK 169

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 1e-28
 Identities = 43/173 (24%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSA-NVVVDGSTVNLGLWDTAGQED 66
           K V +G+G VGKT +++ Y  N F   ++ T+  +F    + + G  VNL +WDTAGQE 
Sbjct: 5   KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           ++ L P+ YR ++  +L + +  + S++ V        +     + + +VG K+DL  ++
Sbjct: 65  FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKER 124

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
                       +  + E   + +GA  +   S+K  + ++ +F    K +++
Sbjct: 125 HV----------SIQEAESYAESVGAK-HYHTSAKQNKGIEELFLDLCKRMIE 166

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 5e-28
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 11/172 (6%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R  K V +G G VGK+ + + +    F   Y PT+ D++   V VD     L + DTAG 
Sbjct: 2   REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGT 61

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLR 123
           E +  +R L  +    F L +S+ +++++ ++       LR      VP+ILVG K    
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKC--- 118

Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
                  D      +   QG+ L +      ++E S+K++ NV  +F   ++
Sbjct: 119 -------DLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (251), Expect = 7e-28
 Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 17/184 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV--VDGSTVNLGLWDTAGQ 64
           +K + +GD  VGKT ++  Y ++ +   Y  T+  +F    V         + +WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKL 120
           E +  L    YRGAD  +L + + + +S+EN+       L H         P +++G K+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQP 180
           D  + K+ +++            +EL K +G       S+K   NV   F+   +  LQ 
Sbjct: 123 DAEESKKIVSEK---------SAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ- 172

Query: 181 PKNK 184
            +N+
Sbjct: 173 -QNQ 175

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 8e-28
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 12/179 (6%)

Query: 2   SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDT 61
           S     + V VG G VGK+ + I +  + F TDY PT+ D+++   V+D     L + DT
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDT 60

Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKL 120
           AGQE++  +R    R  + FLL FS+  + S+E + K     LR       P+IL+G K 
Sbjct: 61  AGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKA 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
           DL   +Q           T  +G++L + +    Y+E S+K + NV   F   ++V+ +
Sbjct: 121 DLDHQRQV----------TQEEGQQLARQLKVT-YMEASAKIRMNVDQAFHELVRVIRK 168

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.8 bits (242), Expect = 1e-26
 Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 12/174 (6%)

Query: 3   ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLG-LWDT 61
           A R +K   +GD  VGK+ ++  +  ++F  +  PT+  +F    V   + ++   +WDT
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 62  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
           AG E +  L P+ YRG+   ++ + +  + ++  +        +H  P + + + G K D
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
           L D ++ +              ++    I A  ++E S+K   N+  +F    +
Sbjct: 121 LTDVREVMER----------DAKDYADSIHAI-FVETSAKNAININELFIEISR 163

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 3e-26
 Identities = 44/175 (25%), Positives = 79/175 (45%), Gaps = 13/175 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            +    G G VGK+ +++ +   TF   Y+PTV D +   +  D S   L + DT G   
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQ 62

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKK--WIPELRHYAPGVPIILVGTKLDLRD 124
           +  ++ LS      F+L +S+ S+ S E +      I E++     +PI+LVG K D   
Sbjct: 63  FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 122

Query: 125 DKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
            ++            +++ E L +      ++E S+K   NVK +F   + +  +
Sbjct: 123 SREV----------QSSEAEALARTWKCA-FMETSAKLNHNVKELFQELLNLEKR 166

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 96.7 bits (239), Expect = 4e-26
 Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 9/170 (5%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG-STVNLGLWDTAGQE 65
           IK V +G+ AVGK+ +++ + SN F  +  PT+   F    V     TV   +WDTAGQE
Sbjct: 4   IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
            +  L P+ YR A   L+ + +    S+              +  + I LVG K+D+  +
Sbjct: 64  RFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQE 123

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
                   G   +   +GE+L +  G   + E S+KT +NV  VF    +
Sbjct: 124 G-------GERKVAREEGEKLAEEKGLL-FFETSAKTGENVNDVFLGIGE 165

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 97.1 bits (240), Expect = 4e-26
 Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 16/191 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQE 65
           +K + +GD  VGKT ++  Y +  F   Y  T+     +  V+VD   V + +WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP----GVPIILVGTKLD 121
            +  L    YRGAD  +L F + +  +++ +       L   +P      P +++G K+D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPP 181
           L + +             T + +          Y E S+K   NV+  F    +  L+  
Sbjct: 123 LENRQV-----------ATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 171

Query: 182 KNKKKKKRKAQ 192
              +      +
Sbjct: 172 TEVELYNEFPE 182

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.5 bits (236), Expect = 9e-26
 Identities = 59/174 (33%), Positives = 89/174 (51%), Gaps = 13/174 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K V VGDG VGK+ + I +    F  DY PT+ D++  +  +D     L + DTAGQE++
Sbjct: 6   KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDK 126
           + +R    R  D FL+ +S+  KAS+E+V +     LR       P+ILV  K+DL   +
Sbjct: 66  SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR 125

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ-NVKAVFDAAIKVVLQ 179
           +          +T  QG+E+      P YIE S+K    NV   F   ++V+ Q
Sbjct: 126 K----------VTRDQGKEMATKYNIP-YIETSAKDPPLNVDKTFHDLVRVIRQ 168

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 2e-23
 Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 15/176 (8%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQED 66
           K V VGDG  GKT  +  + +  F   YV T+           +   +   +WDTAGQE 
Sbjct: 5   KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
           +  LR   Y  A   ++ F  ++          W  +L      +PI+L G K+D++D K
Sbjct: 65  FGGLRDGYYIQAQCAIIMFD-VTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182
                          + + L+       Y + S+K+  N +  F    + ++  P 
Sbjct: 124 VKAKSI------VFHRKKNLQ-------YYDISAKSNYNFEKPFLWLARKLIGDPN 166

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.1 bits (217), Expect = 6e-23
 Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 14/175 (8%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K    G   VGK+ +++ + +  F  +Y PT+   +     +D   V++ + DTAGQED
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
             + R    R  + F+L + +  + S+E V               V +ILVG K DL   
Sbjct: 63  TIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 121

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ-NVKAVFDAAIKVVLQ 179
           +Q           +T +GE+L   +    + ECS+ T + N+  +F    + V +
Sbjct: 122 RQV----------STEEGEKLATELACA-FYECSACTGEGNITEIFYELCREVRR 165

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.2 bits (212), Expect = 3e-22
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 17/172 (9%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAG 63
           R  K + +GD  VGKTC+   + +  FP     T+  +     V +DG  + + LWDTAG
Sbjct: 1   RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAG 60

Query: 64  QEDYNRL-RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLD 121
           QE + +      YR     +  + + + AS+ ++        +H  A  +P ILVG K D
Sbjct: 61  QERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCD 120

Query: 122 LRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ---NVKAVF 170
           LR   Q            T   ++       P   E S+K      +V+A+F
Sbjct: 121 LRSAIQV----------PTDLAQKFADTHSMP-LFETSAKNPNDNDHVEAIF 161

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.3 bits (212), Expect = 4e-22
 Identities = 55/174 (31%), Positives = 76/174 (43%), Gaps = 13/174 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
           IK V VG+GAVGK+ M+  Y    F  DY  T+  D     + V+   V L LWDTAGQE
Sbjct: 3   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62

Query: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
           +++ +    YRGA   +L FS   + S+E +   W  ++      +P  LV         
Sbjct: 63  EFDAITKAYYRGAQACVLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALV--------- 112

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
            Q   D      I   + E L K +    +   S K   NV  VF    +  LQ
Sbjct: 113 -QNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 84.3 bits (207), Expect = 2e-21
 Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 11/165 (6%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ + VG  A GKT +L         T      F+  +    V+   ++  +WD  GQ+ 
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 56

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDK 126
              L    ++     +       +       ++ +  L        ++       +  +K
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL------LVFANK 110

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 171
           Q L +   A  IT   G    +           + +   +    D
Sbjct: 111 QDLPNAMNAAEITDKLGLHSLRHRNWY-IQATCATSGDGLYEGLD 154

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (205), Expect = 4e-21
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 12/173 (6%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           S+  K   +G  +VGK+ + I +    F   Y PT+ + F+  + V+G   +L L DTAG
Sbjct: 2   SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAG 61

Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDL 122
           Q++Y+          + ++L +S+ S  S+E +       L       +PI+LVG K DL
Sbjct: 62  QDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 121

Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
             ++            +  +G+ L +   A  ++E S+K  Q    VF   I 
Sbjct: 122 HMERVI----------SYEEGKALAESWNAA-FLESSAKENQTAVDVFRRIIL 163

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (201), Expect = 2e-20
 Identities = 36/182 (19%), Positives = 72/182 (39%), Gaps = 17/182 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++   +GD   GK+ ++  + + ++      T  + +   ++VDG T  + + + AG  D
Sbjct: 6   LRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD 64

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAK--KWIPELRHYAP-GVPIILVGTKLDLR 123
                      AD  +  FSL  + S++ V++    +  LR     G+ + LVGT+  + 
Sbjct: 65  AKF-----SGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 119

Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKN 183
                         +  A+   L   +    Y E  +    NV  VF    + V+   K 
Sbjct: 120 ASSP--------RVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQ 171

Query: 184 KK 185
           ++
Sbjct: 172 QQ 173

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 2e-18
 Identities = 23/174 (13%), Positives = 50/174 (28%), Gaps = 16/174 (9%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K + VG    GKT +L  ++ N           +       +  +     +WD  GQE 
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE----IVINNTRFLMWDIGGQES 71

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDD 125
                   Y   +  ++      +       ++    L H       +++   K D+++ 
Sbjct: 72  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 131

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDA---AIKV 176
                       I+        K         C + T + +    +     +K+
Sbjct: 132 MT-------VAEISQFLKLTSIKDHQWH-IQACCALTGEGLCQGLEWMMSRLKI 177

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 3e-18
 Identities = 25/168 (14%), Positives = 48/168 (28%), Gaps = 11/168 (6%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           ++ ++ + +G  A GKT +L         T      F+  +         V   +WD  G
Sbjct: 10  NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGG 65

Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR 123
           Q+    L    Y G    +       +   +   ++    +        IIL+       
Sbjct: 66  QDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFA----- 120

Query: 124 DDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 171
            +KQ L D      I    G    +           + +   +     
Sbjct: 121 -NKQDLPDAMKPHEIQEKLGLTRIRDRNWY-VQPSCATSGDGLYEGLT 166

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.5 bits (187), Expect = 4e-18
 Identities = 30/205 (14%), Positives = 56/205 (27%), Gaps = 33/205 (16%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K + +G G  GK+  +            VPT           D  +V   + D  GQ  
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE---YPFDLQSVIFRMVDVGGQRS 57

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVA----------KKWIPELRHYA-PGVPIIL 115
             R     +      +   +L         +            +   + +       +IL
Sbjct: 58  ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 117

Query: 116 VGT-------KLDLRDDKQFLADHPGAVPITTA-------QGEELRKLIGAPVYI-ECSS 160
                     K+       +  ++ G      A          +L       +Y     +
Sbjct: 118 FLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCA 177

Query: 161 KTQQNVKAVFDAAIKVVLQPPKNKK 185
              +N++ VF A    +LQ   N K
Sbjct: 178 TDTENIRFVFAAVKDTILQ--LNLK 200

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (181), Expect = 1e-17
 Identities = 34/179 (18%), Positives = 66/179 (36%), Gaps = 15/179 (8%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSN--TFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTA 62
            + + V +G+  VGK+ +   +     +  +D      D +   ++VDG +  + L D  
Sbjct: 2   TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61

Query: 63  GQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPE--LRHYAPGVPIILVGTKL 120
             +  N              L    I+  +    A +   +         +PIILVG K 
Sbjct: 62  ENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNK- 120

Query: 121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQ 179
                    +D      ++ ++G     +     +IE S+  Q NVK +F+  ++ V  
Sbjct: 121 ---------SDLVRCREVSVSEGRACAVVFDCK-FIETSAAVQHNVKELFEGIVRQVRL 169

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.0 bits (183), Expect = 1e-17
 Identities = 25/199 (12%), Positives = 54/199 (27%), Gaps = 34/199 (17%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           +K + +G G  GK+ ++            +                 ++  ++D  GQ  
Sbjct: 3   VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETH--------FTFKDLHFKMFDVGGQRS 54

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENV----------AKKWIPELRHYA-PGVPIIL 115
             +     + G    +   +L                    K +     +       IIL
Sbjct: 55  ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIIL 114

Query: 116 VGT-------KLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA-------PVYI-ECSS 160
                     K+          ++ G+     A      +            +Y     +
Sbjct: 115 FLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCA 174

Query: 161 KTQQNVKAVFDAAIKVVLQ 179
              +NV+ VFDA   V+++
Sbjct: 175 TDTKNVQFVFDAVTDVIIK 193

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 74.2 bits (181), Expect = 1e-17
 Identities = 28/170 (16%), Positives = 50/170 (29%), Gaps = 13/170 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ + +G    GKT +L    S           F+  S           L +WD  GQ  
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQS----QGFKLNVWDIGGQRK 72

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDD 125
                   +   D+ +       +  +E   ++    L       VP+++   K DL   
Sbjct: 73  IRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
                    A  I         +         CS+ T + V+   +   K
Sbjct: 133 AP-------ASEIAEGLNLHTIRDRVWQ-IQSCSALTGEGVQDGMNWVCK 174

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 73.9 bits (180), Expect = 3e-17
 Identities = 25/182 (13%), Positives = 54/182 (29%), Gaps = 19/182 (10%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ + +G    GKT +L         T   PT+  N      +    + L +WD  GQ  
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNV---ETLSYKNLKLNVWDLGGQTS 73

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDD 125
                   Y      +       K      +K+    L+        +++   K D    
Sbjct: 74  IRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 133

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNKK 185
               ++    + +   +             +  S+   + +    D  I V+      K+
Sbjct: 134 LS-ASEVSKELNLVELKDRSWS-------IVASSAIKGEGITEGLDWLIDVI------KE 179

Query: 186 KK 187
           ++
Sbjct: 180 EQ 181

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 70.5 bits (171), Expect = 3e-16
 Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 12/170 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++   VG    GKT  +    S  F  D +PTV  N      +    V + LWD  GQ  
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM---RKITKGNVTIKLWDIGGQPR 59

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAP-GVPIILVGTKLDLRDD 125
           +  +     RG    +       +   E    +    L      G+P++++G K DL   
Sbjct: 60  FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 119

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
                       +         +          S K + N+       I+
Sbjct: 120 LD-------EKELIEKMNLSAIQDREIC-CYSISCKEKDNIDITLQWLIQ 161

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.5 bits (171), Expect = 4e-16
 Identities = 19/164 (11%), Positives = 42/164 (25%), Gaps = 4/164 (2%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + +G    GKT +L    ++   T   PT          +    +    +D  G    
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS---EELAIGNIKFTTFDLGGHIQA 57

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ 127
            RL    +   +  +          ++    +               ++        +  
Sbjct: 58  RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 117

Query: 128 FLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFD 171
             A+   A+ +    G +  +         CS   +      F 
Sbjct: 118 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ 161

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 69.3 bits (168), Expect = 1e-15
 Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 9/170 (5%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
            K V +G    GKT +L     +            +      +  + +    +D  G   
Sbjct: 14  GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE----LTIAGMTFTTFDLGGHIQ 69

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWI-PELRHYAPGVPIILVGTKLDLRD- 124
             R+        +  +               ++            VPI+++G K+D  + 
Sbjct: 70  ARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA 129

Query: 125 -DKQFLADHPGAVPITTAQGEELRKLIGAPV--YIECSSKTQQNVKAVFD 171
             ++ L +  G    TT +G    K + A       CS   +Q     F 
Sbjct: 130 ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 179

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (166), Expect = 2e-15
 Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 13/178 (7%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           K + +G   VGK+ +   +                +  ++VVDG   +L ++D   Q+  
Sbjct: 3   KVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPG-VPIILVGTKLDLRDDK 126
             L        D +++ +S+  K S+E  ++  +   R      VPIILVG K DL   +
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121

Query: 127 QFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPKNK 184
           +           +  +G     +     +IE S+    NV+A+F+  ++ +     +K
Sbjct: 122 EV----------SVDEGRACAVVFDCK-FIETSAALHHNVQALFEGVVRQIRLRRDSK 168

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 3e-15
 Identities = 21/183 (11%), Positives = 49/183 (26%), Gaps = 17/183 (9%)

Query: 4   SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
           +R ++ + +G    GKT +L         T    T+         V    +   +WD  G
Sbjct: 3   TREMRILILGLDGAGKTTILYRLQVGEVVT----TIPTIGFNVETVTYKNLKFQVWDLGG 58

Query: 64  QEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDL 122
                      Y   D  +       +        + +  L         +++   K D+
Sbjct: 59  LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 118

Query: 123 RDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVVLQPPK 182
                             + G    K        + S+     +    +  ++ +    K
Sbjct: 119 EQAMTSSEMA-------NSLGLPALKDRKWQ-IFKTSATKGTGLDEAMEWLVETL----K 166

Query: 183 NKK 185
           +++
Sbjct: 167 SRQ 169

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 67.0 bits (162), Expect = 7e-15
 Identities = 25/170 (14%), Positives = 53/170 (31%), Gaps = 13/170 (7%)

Query: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQED 66
           ++ + +G    GKT +L  +      T   PT+  N               +WD  GQ+ 
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVDT-ISPTLGFNIKTLEHRGFKLN---IWDVGGQKS 58

Query: 67  YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDD 125
                   +   D  +       +   ++  ++    L      G  +++   K DL   
Sbjct: 59  LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 118

Query: 126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 175
                    A+ + + +    R          CS+ T +++    D  + 
Sbjct: 119 LS-CNAIQEALELDSIRSHHWR-------IQGCSAVTGEDLLPGIDWLLD 160

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.8 bits (149), Expect = 9e-13
 Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 33/202 (16%)

Query: 5   RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ 64
           R +K + +G G  GK+  L             PT   +       +   V   + D  GQ
Sbjct: 1   RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE---YDFEIKNVPFKMVDVGGQ 54

Query: 65  EDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA-----------PGVPI 113
               +     +      L   S           ++                      V I
Sbjct: 55  RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 114

Query: 114 ILVGT-------KLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA--------PVYI-E 157
           IL          K+ +   K +  +  G         + L +            P+Y   
Sbjct: 115 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHF 174

Query: 158 CSSKTQQNVKAVFDAAIKVVLQ 179
            ++   +N++ VF      +L 
Sbjct: 175 TTAINTENIRLVFRDVKDTILH 196

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 6/122 (4%)

Query: 10  VTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR 69
           + VG    GKT + +   +  +  D   ++ D+ +   V +    +L L D  G E    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 70  LRPLSY-RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGV----PIILVGTKLDLRD 124
                +   A   +      +         +++ ++   +  +     +++   K D+  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 125 DK 126
            K
Sbjct: 123 AK 124

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.3 bits (109), Expect = 5e-07
 Identities = 26/199 (13%), Positives = 47/199 (23%), Gaps = 28/199 (14%)

Query: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY 67
           + + +G G  GK+ ++            V T               VN  ++D  GQ D 
Sbjct: 8   RLLLLGAGESGKSTIVKQMRILHV----VLTSGIFE---TKFQVDKVNFHMFDVGGQRDE 60

Query: 68  NRLRPLSYRGADVFLLAFSLISKASYENVAKK----------WIPELRHYAP-GVPIILV 116
            R     +      +   +  S         +          +     +     + +IL 
Sbjct: 61  RRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILF 120

Query: 117 GTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV 176
             K DL  +K       G   I     E       A       +  +         A   
Sbjct: 121 LNKQDLLAEKV----LAGKSKIEDYFPEF------ARYTTPEDATPEPGEDPRVTRAKYF 170

Query: 177 VLQPPKNKKKKKRKAQKAC 195
           +              +  C
Sbjct: 171 IRDEFLRISTASGDGRHYC 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.98
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.95
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.93
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.93
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.93
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.92
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.89
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.87
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.87
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.86
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.86
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.85
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.84
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.83
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.83
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.79
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.78
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.73
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.72
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.71
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.71
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.7
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.69
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.65
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.61
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.57
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.53
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.43
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.25
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.21
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.19
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.11
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.05
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.93
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.92
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.6
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.51
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.43
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.34
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.29
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.06
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.05
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.02
d1okkd2	207	GTPase domain of the signal recognition particle r	98.02
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.02
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.99
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.97
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.92
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.86
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.82
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.72
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.7
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.65
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.64
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.62
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.62
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.6
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.55
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.52
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.52
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.51
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.46
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.44
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.38
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.37
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.35
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.31
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.29
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.29
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.28
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.25
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.22
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.21
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.19
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.17
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.17
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.12
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.12
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.11
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.11
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.1
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.09
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.07
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.05
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.03
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.01
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.99
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.97
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.93
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.89
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.89
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.88
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.88
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.88
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.88
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.87
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.86
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.85
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.85
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.85
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.83
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.81
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.8
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.79
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.79
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.77
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.74
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.67
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.63
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.63
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.62
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.62
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.61
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.61
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.6
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.6
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.59
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.58
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.57
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.57
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.53
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.52
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.49
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.45
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.38
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.36
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.36
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.34
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.34
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.33
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.19
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.16
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.15
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.14
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.11
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.07
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.99
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.92
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.86
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.86
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.84
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.83
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.68
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.59
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.58
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.55
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.54
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.43
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.39
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.38
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.36
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.34
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.27
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.23
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.22
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.19
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.19
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.18
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.14
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.12
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	94.98
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.9
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.88
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.74
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.72
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.62
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.59
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.5
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.5
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.43
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.41
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.35
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.25
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.18
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.14
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.07
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.06
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.95
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.94
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.94
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.77
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.65
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.1
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.07
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.02
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	92.6
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.43
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	92.17
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.13
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	91.42
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	91.22
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.19
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.11
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.03
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	90.88
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.83
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	90.63
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	90.01
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.93
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	89.88
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.19
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.44
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.35
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.33
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.27
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	87.8
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.34
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.31
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	87.06
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	86.96
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	86.93
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	86.52
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	86.44
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	86.19
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	85.97
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	85.77
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	85.71
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	85.65
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	85.51
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	85.31
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	85.12
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	84.83
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	84.56
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	84.43
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	83.54
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	82.61
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	81.3
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	80.8
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	80.08

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-40  Score=230.81  Aligned_cols=187  Identities=54%  Similarity=0.972  Sum_probs=161.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      .+||+++|.+|||||||+++|..+.+...+.||.+........+++..+.+.+||++|+++|...+..+++++|++++||
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   82 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   82 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeeccc
Confidence            68999999999999999999999999999999998888888888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |+++++||+.+...|...+....++.|+++|+||+|+.+.....  ........++.+++++++++++..+|+||||++|
T Consensus        83 d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  162 (191)
T d2ngra_          83 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ  162 (191)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTC
T ss_pred             ccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            99999999999667888888877899999999999997653211  1223344588899999999987668999999999


Q ss_pred             CCHHHHHHHHHHHHcCCCcchHHhhccccCCcccC
Q 029144          164 QNVKAVFDAAIKVVLQPPKNKKKKKRKAQKACSIL  198 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~c~~~  198 (198)
                      .||+++|+.+++.+.++.+.      +++++|.||
T Consensus       163 ~~V~e~f~~l~~~~~~~~~~------k~~~~C~i~  191 (191)
T d2ngra_         163 KGLKNVFDEAILAALEPPEP------KKSRRCVLL  191 (191)
T ss_dssp             TTHHHHHHHHHHHHTSCCST------TCCCSCCCC
T ss_pred             cCHHHHHHHHHHHHhcCcCC------CCCCCCeEC
Confidence            99999999999988776443      234447775

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-39  Score=226.64  Aligned_cols=176  Identities=55%  Similarity=0.996  Sum_probs=156.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ...+||+++|.+|||||||+++|+.+.+.+.+.+|.++.....+..++..+.+.+||++|++.|...+..+++++|++++
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~il   86 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   86 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeee
Confidence            45789999999999999999999999999999999988888888888889999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++++|+.....|...++...++.|+++|+||+|+.++....  ......+.++.+++++++++++...|+||||+
T Consensus        87 v~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk  166 (185)
T d2atxa1          87 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  166 (185)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCC
Confidence            9999999999988788888888888899999999999998654321  12233456889999999999986689999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      +|.||+++|+.++++++.
T Consensus       167 ~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         167 TQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHHHcC
Confidence            999999999999998764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=222.20  Aligned_cols=174  Identities=51%  Similarity=0.886  Sum_probs=153.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      ..||+|+|.+|+|||||++++..+.+++.+.||.+........+++..+.+.+||++|++.|...+..+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            47999999999999999999999999999999988888788888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |++++++|+.....|...+....++.|+++|+||+|+.+.....  ......+.++.++++.++++.+..+|+||||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~  161 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK  161 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTC
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCC
Confidence            99999999998778888888888899999999999997643211  1112334578889999999999778999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029144          164 QNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (198)
                      .||+++|+.+++++++
T Consensus       162 ~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         162 DGVREVFEMATRAALQ  177 (177)
T ss_dssp             TTHHHHHHHHHHHHHC
T ss_pred             cCHHHHHHHHHHHHhC
Confidence            9999999999998753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-38  Score=219.06  Aligned_cols=164  Identities=29%  Similarity=0.442  Sum_probs=149.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +++.+||+++|.+|||||||+++|.++.+.+.+.||.+..+...+.+++..+.+.+||++|.+.+..++..+++++|+++
T Consensus         1 ~~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           1 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CCcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            35779999999999999999999999999999999998888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      +|||+++++++..+ ..|...+....  ++.|+++|+||+|+..++.          ++.++++.+++++++ +|++|||
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~----------v~~~~~~~~a~~~~~-~~~e~Sa  148 (167)
T d1xtqa1          81 LVYSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERV----------ISYEEGKALAESWNA-AFLESSA  148 (167)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHCSSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECCT
T ss_pred             hhcccchhhhhhhh-hhhhhhhhhcccccccceeeeccccccccccc----------hhHHHHHHHHHHcCC-EEEEEec
Confidence            99999999999999 77776665543  5899999999999977654          888999999999998 7999999


Q ss_pred             CCCCCHHHHHHHHHHHHc
Q 029144          161 KTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~  178 (198)
                      ++|.|++++|..+++.+.
T Consensus       149 k~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         149 KENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             TCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhc
Confidence            999999999999998763

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=221.99  Aligned_cols=179  Identities=65%  Similarity=1.069  Sum_probs=157.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +++.+||+++|.+|||||||+++|+.+.+.+.+.+|.++.....+..++..+.+.+||++|++.|...+..+++++|+++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            46789999999999999999999999999999999998888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      +|||++++++|+.+...|...++...++.|+++|+||+|+.+++...  ............++..++++++..+|+||||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            99999999999998667888888887899999999999997653311  1123334467778899999998779999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCC
Q 029144          161 KTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ++|.||+++|..+++.++.++
T Consensus       162 k~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCcCHHHHHHHHHHHHcCCC
Confidence            999999999999999988764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-38  Score=221.38  Aligned_cols=165  Identities=31%  Similarity=0.540  Sum_probs=149.2

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +.+.+||+++|.+|||||||++++..+.+.+.+.++..+.....+.+++..+.+.+||++|++.+...+..+++++|+++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i   82 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   82 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeee
Confidence            45789999999999999999999999999999999988888888889999999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           83 LAFSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      +|||++++.++..+ ..|...+...  .++.|+++|+||+|+...+.          +..++++.++...+. +|++|||
T Consensus        83 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa  150 (173)
T d2fn4a1          83 LVFAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQ----------VPRSEASAFGASHHV-AYFEASA  150 (173)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECBT
T ss_pred             eecccccccccchh-hhhhHHHHHHhccCCCceEEEEEeechhhccc----------cchhhhhHHHHhcCC-EEEEEeC
Confidence            99999999999998 6776666543  36899999999999977654          778899999999998 7999999


Q ss_pred             CCCCCHHHHHHHHHHHHcC
Q 029144          161 KTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~  179 (198)
                      ++|.||+++|..+++.+.+
T Consensus       151 k~g~gv~e~f~~l~~~i~k  169 (173)
T d2fn4a1         151 KLRLNVDEAFEQLVRAVRK  169 (173)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHH
Confidence            9999999999999998744

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.1e-38  Score=215.92  Aligned_cols=161  Identities=35%  Similarity=0.542  Sum_probs=147.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-ceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .+||+++|.+|+|||||+++|.++.+...+.+|.+. ........++..+.+.+||++|++.+...+..++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            489999999999999999999999999998898864 4566677888999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      ||++++++++.+ ..|+..+....++.|+++|+||+|+.+++.          ++.++++.+++.+++ +|+++||++|.
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~g~  149 (164)
T d1z2aa1          82 FSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSC----------IKNEEAEGLAKRLKL-RFYRTSVKEDL  149 (164)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-EEEECBTTTTB
T ss_pred             Eeccchhhhhhc-ccccccccccCCCceEEEeeccCCccccee----------eeehhhHHHHHHcCC-EEEEeccCCCc
Confidence            999999999998 789998888878999999999999987654          888899999999998 89999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029144          165 NVKAVFDAAIKVVL  178 (198)
Q Consensus       165 ~i~~~~~~i~~~~~  178 (198)
                      |++++|..|++.++
T Consensus       150 ~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         150 NVSEVFKYLAEKHL  163 (164)
T ss_dssp             SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999999875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=5.5e-38  Score=217.26  Aligned_cols=163  Identities=32%  Similarity=0.564  Sum_probs=145.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      ..+||+++|.+|||||||++++..+.+.+.+.||.+..+...+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            35799999999999999999999999999999999888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ||++++.+++.+ ..|+..+....  ++.|+++|+||+|+.+.+.          ++.++++.+++..++ +|+++||++
T Consensus        83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  150 (168)
T d1u8za_          83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQ----------VSVEEAKNRADQWNV-NYVETSAKT  150 (168)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             eeccchhhhhhH-HHHHHHHHHhhCCCCCcEEEEecccccccccc----------ccHHHHHHHHHHcCC-eEEEEcCCC
Confidence            999999999999 77877776543  6899999999999976654          888999999999998 799999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      |.|++++|.+|++.+..
T Consensus       151 g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         151 RANVDKVFFDLMREIRA  167 (168)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHC
Confidence            99999999999988754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-38  Score=218.25  Aligned_cols=161  Identities=24%  Similarity=0.383  Sum_probs=130.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      .+||+++|.+|||||||++++.+..+. .+.++....+...+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccC-CcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            379999999999999999999987653 3456666777778888999999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |++++.+++.+ ..|...+....  ...|+++|+||+|+.+...          ++..+++.++..+++ +|++|||++|
T Consensus        80 d~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~~  147 (168)
T d2gjsa1          80 SVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSRE----------VSVDEGRACAVVFDC-KFIETSAALH  147 (168)
T ss_dssp             ETTCHHHHHHH-HHHHHHHHHHCC--CCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTS-EEEECBTTTT
T ss_pred             ccccccccccc-ccccchhhcccccccceEEEeecccchhhhcc----------hhHHHHHHHHHhcCC-EEEEEeCCCC
Confidence            99999999999 77888776654  5789999999999987654          788999999999998 8999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029144          164 QNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (198)
                      .|++++|..|++.+..
T Consensus       148 ~~v~~~f~~l~~~i~~  163 (168)
T d2gjsa1         148 HNVQALFEGVVRQIRL  163 (168)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHH
Confidence            9999999999987653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-38  Score=218.02  Aligned_cols=163  Identities=26%  Similarity=0.499  Sum_probs=145.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|.+|||||||+++|+.+.+.+.+.+|.+..+.....+++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            46899999999999999999999999999999999888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhh---hCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           85 FSLISKASYENVAKKWIPELRH---YAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      ||+++++++..+ ..|...+..   ..++.|+++|+||+|+.+.+.          ++.++++++++.+++ +|++|||+
T Consensus        81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~----------v~~~e~~~~~~~~~~-~~~e~Sak  148 (171)
T d2erxa1          81 YSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC-AFMETSAK  148 (171)
T ss_dssp             EETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTC-EEEECBTT
T ss_pred             eecccccchhcc-cchhhhhhhhhccCCCCcEEEEeeccccccccc----------ccHHHHHHHHHHcCC-eEEEEcCC
Confidence            999999999998 566555543   236899999999999977654          888999999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcC
Q 029144          162 TQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~  179 (198)
                      +|.||+++|..|++.+.+
T Consensus       149 ~~~~v~e~f~~l~~~~~~  166 (171)
T d2erxa1         149 LNHNVKELFQELLNLEKR  166 (171)
T ss_dssp             TTBSHHHHHHHHHHTCCS
T ss_pred             CCcCHHHHHHHHHHHHHH
Confidence            999999999999986644

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.1e-37  Score=214.51  Aligned_cols=163  Identities=34%  Similarity=0.552  Sum_probs=147.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      ..+||+++|.+|+|||||++++.++.+.+.+.+|..+.+......++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            46899999999999999999999999999999998888877788899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ||++++.++..+ ..|...+.+..  .+.|+++|+||+|+...+.          ++.+++++++..+++ +|+++||++
T Consensus        83 ~d~~d~~Sf~~~-~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~----------v~~e~~~~~~~~~~~-~~~e~Sak~  150 (169)
T d1x1ra1          83 YSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRK----------VTRDQGKEMATKYNI-PYIETSAKD  150 (169)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCC----------SCHHHHHHHHHHHTC-CEEEEBCSS
T ss_pred             cccccchhhhcc-chhhHHHHhhccccCccEEEEecccchhhhce----------eehhhHHHHHHHcCC-EEEEEcCCC
Confidence            999999999998 77777766543  5899999999999987654          888999999999998 799999998


Q ss_pred             CC-CHHHHHHHHHHHHcC
Q 029144          163 QQ-NVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~-~i~~~~~~i~~~~~~  179 (198)
                      +. ||+++|..|++.+.+
T Consensus       151 ~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         151 PPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             SCBSHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHh
Confidence            86 999999999998754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.6e-37  Score=215.85  Aligned_cols=174  Identities=37%  Similarity=0.719  Sum_probs=154.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      .+||+++|.+|||||||+++++.+.+++.+.||..........+++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            47999999999999999999999999999999988888888888899999999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccc--cCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFL--ADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |+++++||+.+...|...+....++.|+++|+||+|+.......  ......+.++.+++..++++.+..+|+||||++|
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~  161 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS  161 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTB
T ss_pred             ecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            99999999998677888888887899999999999997543211  1223445688999999999998878999999999


Q ss_pred             C-CHHHHHHHHHHHHcC
Q 029144          164 Q-NVKAVFDAAIKVVLQ  179 (198)
Q Consensus       164 ~-~i~~~~~~i~~~~~~  179 (198)
                      . +++++|+.+++.+++
T Consensus       162 ~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         162 ENSVRDIFHVATLACVN  178 (179)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHhc
Confidence            8 499999999998875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-37  Score=212.38  Aligned_cols=163  Identities=29%  Similarity=0.601  Sum_probs=138.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|.+|||||||++++..+.+.+.+.+|..... ......++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            468999999999999999999999999999999887555 4466678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||++++++|+.+ ..|+..+.... +..|+++|+||+|+.+.+.          ++.++++.+++.+++ +|++|||++
T Consensus        82 v~d~~~~~Sf~~~-~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~----------v~~~e~~~~a~~~~~-~~~e~Sak~  149 (167)
T d1z08a1          82 VYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERH----------VSIQEAESYAESVGA-KHYHTSAKQ  149 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEEEBTTT
T ss_pred             EEeCCchhHHHhh-hhhhhhcccccccccceeeeccccccccccc----------cchHHHHHHHHHcCC-eEEEEecCC
Confidence            9999999999999 66666555443 6889999999999987654          889999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      |.||+++|.+|++.+++
T Consensus       150 ~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         150 NKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999998864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-37  Score=213.90  Aligned_cols=163  Identities=28%  Similarity=0.530  Sum_probs=146.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|.+|||||||++++..+.+.+.+.++.+..+...+.+++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            57999999999999999999999999999999999888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhh--CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHY--APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ||++++.+++.+ ..|...+...  .++.|+++|+||+|+.....          ...+++..++.+....+|++|||++
T Consensus        82 ~d~~~~~sf~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~Sak~  150 (167)
T d1c1ya_          82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERV----------VGKEQGQNLARQWCNCAFLESSAKS  150 (167)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTSCEEEECBTTT
T ss_pred             eeccchhhhHhH-HHHHHHHHHhcCCCCCeEEEEEEecCcccccc----------cchhHHHHHHHHhCCCEEEEEcCCC
Confidence            999999999999 6666665543  36899999999999987654          7788888998886544899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029144          163 QQNVKAVFDAAIKVVL  178 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~  178 (198)
                      |.|++++|.+|++.+.
T Consensus       151 g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         151 KINVNEIFYDLVRQIN  166 (167)
T ss_dssp             TBSHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHhc
Confidence            9999999999998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=215.60  Aligned_cols=163  Identities=33%  Similarity=0.608  Sum_probs=143.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ++.+||+++|.+|||||||++++..+.+.+.+.+|.++.....+.+++..+.+.+||++|++.+...+..+++++|++++
T Consensus         3 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           3 QEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            44589999999999999999999999999999999998888888999999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhh-C-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHY-A-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||.+++.++..+ ..|...+... . +..|+++|+||+|+.....          ++.+++..+++.+++ +|++|||+
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak  150 (171)
T d2erya1          83 VFSVTDRGSFEEI-YKFQRQILRVKDRDEFPMILIGNKADLDHQRQ----------VTQEEGQQLARQLKV-TYMEASAK  150 (171)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHHTSSCCSEEEEEECTTCTTSCS----------SCHHHHHHHHHHTTC-EEEECBTT
T ss_pred             eeccccccchhhH-HHHhHHHHhhcccCCCCEEEEEeccchhhhcc----------chHHHHHHHHHHcCC-EEEEEcCC
Confidence            9999999999999 6666555443 2 5899999999999977654          888999999999998 79999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 029144          162 TQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~  178 (198)
                      +|.||+++|..|++.+.
T Consensus       151 ~~~~i~e~f~~l~~~i~  167 (171)
T d2erya1         151 IRMNVDQAFHELVRVIR  167 (171)
T ss_dssp             TTBSHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHH
Confidence            99999999999999874

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.5e-37  Score=211.74  Aligned_cols=163  Identities=30%  Similarity=0.629  Sum_probs=143.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|.+|+|||||++++..+.+...+.++.+ +.....+...+..+.+.+||+||++.+..++..+++++|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999998888888876 4445667778888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||+++++++... ..|...+.... +..|+++|+||+|+.+...          ++.++++.++..+++ +|++|||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  151 (169)
T d3raba_          84 MYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERV----------VSSERGRQLADHLGF-EFFEASAKD  151 (169)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHCCSCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEECBTTT
T ss_pred             EEECccchhhhhh-hhhhhhhhcccCCcceEEEEEeecccccccc----------cchhhhHHHHHHcCC-EEEEecCCC
Confidence            9999999999988 55555555544 6899999999999977654          788899999999998 799999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      |.|++++|+++++.+.+
T Consensus       152 g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         152 NINVKQTFERLVDVICE  168 (169)
T ss_dssp             TBSHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHhh
Confidence            99999999999998765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-37  Score=213.95  Aligned_cols=162  Identities=30%  Similarity=0.572  Sum_probs=147.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|.+|||||||+++++.+.+.+.+.++.++.......+++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            67999999999999999999999999999999999888888888999999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ||++++.++..+ ..|...+....  ++.|+++|+||+|+.+.+.          +..++++.++..+++ +|+++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sak~  149 (167)
T d1kaoa_          82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESERE----------VSSSEGRALAEEWGC-PFMETSAKS  149 (167)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-CEEEECTTC
T ss_pred             eeecchhhhhhh-hchhhhhhhhccCCCCCEEEEEEccchhhccc----------chHHHHHHHHHHcCC-eEEEECCCC
Confidence            999999999999 66766665433  6899999999999987654          778889999999998 699999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029144          163 QQNVKAVFDAAIKVVL  178 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~  178 (198)
                      |.|++++|..+++.+.
T Consensus       150 g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         150 KTMVDELFAEIVRQMN  165 (167)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHc
Confidence            9999999999998763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-37  Score=211.70  Aligned_cols=163  Identities=30%  Similarity=0.589  Sum_probs=143.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|.+|||||||++++..+.+...+.++.. +.....+.+++..+.+.+||+||++.|..++..++++++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            468999999999999999999999999888777775 4456677889999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |+|++++.++... ..|...+.... ...|+++|+||+|+.+...          +..++++.+++..++ +|++|||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~----------v~~~~~~~~~~~~~~-~~~~~SAkt  151 (171)
T d2ew1a1          84 TYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERRE----------VSQQRAEEFSEAQDM-YYLETSAKE  151 (171)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCS----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             eeecccchhhhhh-hhhhhhhcccccccccEEEEEeecccccccc----------hhhhHHHHHHHhCCC-EEEEEccCC
Confidence            9999999999999 55656655544 6799999999999977654          788899999999998 799999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      |.||+++|..+++.+..
T Consensus       152 g~gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         152 SDNVEKLFLDLACRLIS  168 (171)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999987753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=209.06  Aligned_cols=162  Identities=31%  Similarity=0.606  Sum_probs=143.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|.+|+|||||++++.++.+...+.++....+ .....+++..+.+.+||+||++.+..++..+++++|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            468999999999999999999999999888887775444 5667789999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||+++++++... ..|...+.... +..|+++++||+|+.....          +..++++.+++..++ +|++|||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sakt  150 (166)
T d1z0fa1          83 VYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRD----------VTYEEAKQFAEENGL-LFLEASAKT  150 (166)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EeccCchHHHHHH-HHHHHHHHhhccccceEEEEcccccchhhcc----------cHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            9999999999998 56666666544 6899999999999977654          778899999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029144          163 QQNVKAVFDAAIKVVL  178 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~  178 (198)
                      |.||+++|..|++.++
T Consensus       151 g~~v~e~f~~i~~~i~  166 (166)
T d1z0fa1         151 GENVEDAFLEAAKKIY  166 (166)
T ss_dssp             CTTHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHhC
Confidence            9999999999998864

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-36  Score=208.02  Aligned_cols=162  Identities=25%  Similarity=0.555  Sum_probs=144.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      +.+||+++|.+|||||||+++|..+.+.+.+.+|..... ......++....+.+||++|++.+..++..++++++++++
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            679999999999999999999999999999989886555 4556677888899999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||+++++++..+ ..|...+.... ++.|+++|+||+|+.+.+.          +..+++++++...++ +|++|||++
T Consensus        83 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SAk~  150 (167)
T d1z0ja1          83 VYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVRE----------VMERDAKDYADSIHA-IFVETSAKN  150 (167)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECBTTT
T ss_pred             EeeechhhhhhhH-HHhhhhhhhccCCcceEEEecccchhccccc----------hhHHHHHHHHHHcCC-EEEEEecCC
Confidence            9999999999999 66666665554 7899999999999977654          888999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029144          163 QQNVKAVFDAAIKVVL  178 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~  178 (198)
                      |.||+++|.+|++.+.
T Consensus       151 ~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         151 AININELFIEISRRIP  166 (167)
T ss_dssp             TBSHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHhCC
Confidence            9999999999999863

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-37  Score=212.59  Aligned_cols=160  Identities=29%  Similarity=0.485  Sum_probs=140.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      .+||+++|++|+|||||+++++.+.+.+.+.||.+..+......++..+.+.+||++|++.+. ....++++++++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            589999999999999999999999999999999988888888889999999999999998775 3455788999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh--hCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           86 SLISKASYENVAKKWIPELRH--YAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      |+++++++..+ ..|...+..  ..++.|+++|+||+|+.+.+.          ++.+++++++.++++ +|+++||++|
T Consensus        81 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~----------V~~~e~~~~a~~~~~-~~~e~Saktg  148 (168)
T d2atva1          81 DITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQ----------VSTEEGEKLATELAC-AFYECSACTG  148 (168)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCC----------SCHHHHHHHHHHHTS-EEEECCTTTC
T ss_pred             ccCCccchhhh-hhhcccccccccccCcceeeeccchhhhhhcc----------CcHHHHHHHHHHhCC-eEEEEccccC
Confidence            99999999998 555444333  236899999999999977654          889999999999998 8999999999


Q ss_pred             C-CHHHHHHHHHHHHc
Q 029144          164 Q-NVKAVFDAAIKVVL  178 (198)
Q Consensus       164 ~-~i~~~~~~i~~~~~  178 (198)
                      . ||+++|..+++.+.
T Consensus       149 ~gnV~e~F~~l~~~i~  164 (168)
T d2atva1         149 EGNITEIFYELCREVR  164 (168)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            8 59999999998774

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.5e-36  Score=211.34  Aligned_cols=169  Identities=28%  Similarity=0.569  Sum_probs=147.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +..+||+|+|.+|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.+||+||+++|..+|..++++++++|
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4568999999999999999999999999999889887665 456778899999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhh-hCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRH-YAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||+++++++..+ ..|...+.. ...+.|+++|+||+|+.+...          +..++...++...+. .|+++||+
T Consensus        84 ~v~d~t~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~SAk  151 (194)
T d2bcgy1          84 IVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRV----------VEYDVAKEFADANKM-PFLETSAL  151 (194)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCC----------SCHHHHHHHHHHTTC-CEEECCTT
T ss_pred             EEEeCcchhhhhhH-hhhhhhhhhcccCCceEEEEEeccccccccc----------hhHHHHhhhhhccCc-ceEEEecC
Confidence            99999999999999 555555544 447899999999999987654          788888999999988 69999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCCcch
Q 029144          162 TQQNVKAVFDAAIKVVLQPPKNK  184 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~~~~  184 (198)
                      +|.|++++|..+++.+.......
T Consensus       152 ~g~gi~e~f~~l~~~i~~~~~~~  174 (194)
T d2bcgy1         152 DSTNVEDAFLTMARQIKESMSQQ  174 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHHHCCHH
T ss_pred             cCccHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999887644443

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-36  Score=207.70  Aligned_cols=160  Identities=31%  Similarity=0.562  Sum_probs=141.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAF   85 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   85 (198)
                      +||+++|.+|||||||++++.++.+...+.++.+.. .......++..+.+.+||++|++.+...+..++++++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            699999999999999999999999998888887544 4455666788899999999999999999999999999999999


Q ss_pred             ECCChhhHHHHHHHHHHHHhh-hCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           86 SLISKASYENVAKKWIPELRH-YAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        86 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      |++++.++..+ ..|...+.. ..++.|+++|+||+|+.+...          +..++++++++.+++ +|++|||++|.
T Consensus        81 d~~~~~s~~~i-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~SAk~g~  148 (164)
T d1yzqa1          81 DITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGY  148 (164)
T ss_dssp             ETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTCT
T ss_pred             ccccccchhhh-HhhHHHHHHhcCCCceEEEEecccchhhhhh----------hhHHHHHHHHHHcCC-EEEEecCCCCc
Confidence            99999999999 556555554 447899999999999987654          778899999999998 79999999999


Q ss_pred             CHHHHHHHHHHHHc
Q 029144          165 NVKAVFDAAIKVVL  178 (198)
Q Consensus       165 ~i~~~~~~i~~~~~  178 (198)
                      ||+++|.+|++++.
T Consensus       149 ~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         149 NVKQLFRRVAAALP  162 (164)
T ss_dssp             THHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHhhC
Confidence            99999999999874

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=209.22  Aligned_cols=162  Identities=35%  Similarity=0.592  Sum_probs=147.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|.+|||||||+++|+++.++..+.++.+..+.......+..+.+.+||++|++.+...+..++++++++++|
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            35999999999999999999999999999999999888888888899999999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      +|++++.+++.+ ..|...+....  +++|+++|+||+|+....           +..+++++++..+++ +|+++||++
T Consensus        82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~e~Sak~  148 (166)
T d1ctqa_          82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VESRQAQDLARSYGI-PYIETSAKT  148 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHTCSSCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             ecccccccHHHH-HHHHHHHHHhcCCCCCeEEEEeccccccccc-----------ccHHHHHHHHHHhCC-eEEEEcCCC
Confidence            999999999998 88888877653  579999999999996543           677889999999998 799999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      |+||+++|.++++.+.+
T Consensus       149 g~gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         149 RQGVEDAFYTLVREIRQ  165 (166)
T ss_dssp             CTTHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHHHHh
Confidence            99999999999998753

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-37  Score=214.20  Aligned_cols=162  Identities=28%  Similarity=0.483  Sum_probs=136.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .+||+++|.+|+|||||+++|..+.+.+.+.||.+.. ....+..++..+.+.+||++|++.+..++..++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            5899999999999999999999999999888888644 455666788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQ  164 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  164 (198)
                      ||++++++++.+ ..|+..+....+++|+++|+||+|+.+..            ..++...++...++ +|+++||++|.
T Consensus        83 ~d~~~~~Sf~~~-~~~~~~~~~~~~~~piilvgnK~Dl~~~~------------~~~~~~~~~~~~~~-~~~e~Sak~~~  148 (170)
T d1i2ma_          83 FDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK------------VKAKSIVFHRKKNL-QYYDISAKSNY  148 (170)
T ss_dssp             EETTSGGGGTTH-HHHHHHHHHHHCSCCEEEEEECCCCSCSC------------CTTTSHHHHSSCSS-EEEEEBTTTTB
T ss_pred             cccccccccchh-HHHHHHHhhccCCCceeeecchhhhhhhh------------hhhHHHHHHHHcCC-EEEEEeCCCCC
Confidence            999999999999 77877777777899999999999997653            22345567778887 89999999999


Q ss_pred             CHHHHHHHHHHHHcCCC
Q 029144          165 NVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       165 ~i~~~~~~i~~~~~~~~  181 (198)
                      |++++|.+|++.+...+
T Consensus       149 ~v~e~f~~l~~~l~~~~  165 (170)
T d1i2ma_         149 NFEKPFLWLARKLIGDP  165 (170)
T ss_dssp             TTTHHHHHHHHHHHTCT
T ss_pred             CHHHHHHHHHHHHccCC
Confidence            99999999999887543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=205.08  Aligned_cols=162  Identities=30%  Similarity=0.568  Sum_probs=143.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      .+||+++|.+|||||||+++|..+.+.+.+.++.+..+ ..........+.+.+||++|++.|...+..++++++++++|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            58999999999999999999999999888888886655 45566788889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhh-hCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           85 FSLISKASYENVAKKWIPELRH-YAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      +|+++++++... ..|...+.. ..++.|+++|+||+|+.+.+.          ++.++++.++...++ +|+++||++|
T Consensus        86 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~----------v~~e~~~~~~~~~~~-~~~e~SAk~g  153 (170)
T d1r2qa_          86 YDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRA----------VDFQEAQSYADDNSL-LFMETSAKTS  153 (170)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTTC
T ss_pred             eccchhhHHHHH-HHHhhhhhhccCCCceEEeeccccccccccc----------ccHHHHHHHHHhcCC-EEEEeeCCCC
Confidence            999999999999 555555544 447999999999999987654          888999999999998 8999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029144          164 QNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (198)
                      .||+++|..|++.+.+
T Consensus       154 ~~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         154 MNVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999987754

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=206.50  Aligned_cols=163  Identities=29%  Similarity=0.594  Sum_probs=138.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .-+||+|+|.+|||||||++++.++.+...+.++..... .......+..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            358999999999999999999999998888777775444 4555667888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||+++++++..+ ..|...+.... ++.|+++|+||+|+...+.          ...++++.++...++ +|+++||++
T Consensus        82 v~d~~~~~sf~~~-~~~~~~~~~~~~~~~piilv~nK~D~~~~~~----------~~~~~~~~~a~~~~~-~~~e~Sa~t  149 (173)
T d2a5ja1          82 VYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRD----------VKREEGEAFAREHGL-IFMETSAKT  149 (173)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEEECTTT
T ss_pred             EEeecChHHHHhH-HHHHHHHHHhCCCCCeEEEEecCCchhhhhh----------hHHHHHHHHHHHcCC-EEEEecCCC
Confidence            9999999999999 55655555544 7899999999999977654          778899999999998 799999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      |.||+++|.++++.+.+
T Consensus       150 g~~V~e~f~~i~~~i~~  166 (173)
T d2a5ja1         150 ACNVEEAFINTAKEIYR  166 (173)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-36  Score=207.38  Aligned_cols=164  Identities=30%  Similarity=0.545  Sum_probs=143.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|.+|||||||++++..+.+.+.+.++..... ...+..++..+.+.+||+||++++..++..++++++++++
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            458999999999999999999999999888888876554 4556678888999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |+|.++++++..+ ..|...+.... ++.|+++|+||+|+.....          ...+++..++...++ +|+++||++
T Consensus        84 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sak~  151 (174)
T d2bmea1          84 VYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADRE----------VTFLEASRFAQENEL-MFLETSALT  151 (174)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EEecccchhHHHH-hhhhcccccccCCceEEEEEEecccccchhc----------hhhhHHHHHHHhCCC-EEEEeeCCC
Confidence            9999999999998 56666655544 6899999999999977654          777888899999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029144          163 QQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (198)
                      |.|++++|.++++.+.++
T Consensus       152 ~~gi~e~f~~l~~~i~~~  169 (174)
T d2bmea1         152 GENVEEAFVQCARKILNK  169 (174)
T ss_dssp             CTTHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHH
Confidence            999999999999988643

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=206.67  Aligned_cols=163  Identities=34%  Similarity=0.576  Sum_probs=140.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .-+||+++|.+|||||||++++.++.+...+.++.... ....+.+++..+.+.+||++|++.|...+..++++++++++
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            46899999999999999999999999888877766443 46666788999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||.++++++... ..|+..+.... +++|+++|+||+|+.+.+.          ...+....+....+. +|+++||++
T Consensus        83 v~d~~~~~S~~~~-~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~~  150 (175)
T d2f9la1          83 VYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRA----------VPTDEARAFAEKNNL-SFIETSALD  150 (175)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-EEEECCTTT
T ss_pred             EEECCCcccchhH-HHHHHHHHHhcCCCCcEEEEEeeeccccccc----------chHHHHHHhhcccCc-eEEEEecCC
Confidence            9999999999999 67777777665 6899999999999987653          566677778888877 899999999


Q ss_pred             CCCHHHHHHHHHHHHcC
Q 029144          163 QQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~  179 (198)
                      |.|++++|..+++.+.+
T Consensus       151 g~~i~e~f~~l~~~i~~  167 (175)
T d2f9la1         151 STNVEEAFKNILTEIYR  167 (175)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHH
Confidence            99999999999998753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-35  Score=201.64  Aligned_cols=163  Identities=33%  Similarity=0.510  Sum_probs=131.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCC-Cccc-cceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV-PTVF-DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~-~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ..+||+++|.++||||||++++..+.+...+. ++.+ +.....+..++..+.+.+|||||++.+..++..+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            45899999999999999999999998765543 4333 334556778899999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      +|||++++.++..+...|........+..|+++|+||+|+.+...          ++.+++..++..+++ +|+++||++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sak~  153 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV----------VKREDGEKLAKEYGL-PFMETSAKT  153 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred             EEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhccc----------ccHHHHHHHHHHcCC-EEEEEeCCC
Confidence            999999999999994444444444446889999999999987654          888999999999998 799999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029144          163 QQNVKAVFDAAIKVVL  178 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~  178 (198)
                      |.|++++|.+|++.+.
T Consensus       154 g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         154 GLNVDLAFTAIAKELK  169 (170)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHcC
Confidence            9999999999998764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.6e-36  Score=208.06  Aligned_cols=163  Identities=28%  Similarity=0.584  Sum_probs=114.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCcccc-ceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFD-NFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ++.+||+++|.+|||||||+++|..+.+...+.++.+. .....+.+++..+.+.+||+||++.|..++..+++++|++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            45689999999999999999999999888877777754 44667788899999999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhh-CCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           83 LAFSLISKASYENVAKKWIPELRHY-APGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      +|||++++.++..+ ..|...+... .++.|+++|+||.|+.....          ...+++..++...++ +|++|||+
T Consensus        84 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa~  151 (173)
T d2fu5c1          84 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI-KFMETSAK  151 (173)
T ss_dssp             EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCC----------SCHHHHHHHHHHHTC-EEEECCC-
T ss_pred             EEEECCChhhHHHH-HHHHHHhhhhccCCceEEEEEecccchhhcc----------cHHHHHHHHHHhcCC-EEEEEeCC
Confidence            99999999999998 6666666544 47899999999999987654          677788889999998 79999999


Q ss_pred             CCCCHHHHHHHHHHHHc
Q 029144          162 TQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~  178 (198)
                      +|+|++++|.+|++.+.
T Consensus       152 ~g~gv~e~f~~l~~~i~  168 (173)
T d2fu5c1         152 ANINVENAFFTLARDIK  168 (173)
T ss_dssp             --CCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999999773

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-34  Score=200.93  Aligned_cols=165  Identities=32%  Similarity=0.588  Sum_probs=144.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|.+|+|||||++++..+.+.+.+.+|.+..+ ...+..++..+.+.+||++|++.+..++..++.++|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            368999999999999999999999999999999887554 5677788999999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhh-hCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRH-YAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      |||++++.++..+ ..|...+.. .....|+++++||+|+.+..       ..+.+..++++++++..++ +|+++||++
T Consensus        82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~-------~~~~v~~~~~~~~~~~~~~-~~~e~Sak~  152 (170)
T d1ek0a_          82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDMLQEG-------GERKVAREEGEKLAEEKGL-LFFETSAKT  152 (170)
T ss_dssp             EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSS-------CCCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred             EEeCCcccchhhh-hhhhhhhccccccccceeeeeccccccccc-------chhhhhHHHHHHHHHHcCC-EEEEecCCC
Confidence            9999999999999 555554444 44689999999999997642       2445888999999999998 899999999


Q ss_pred             CCCHHHHHHHHHHHHc
Q 029144          163 QQNVKAVFDAAIKVVL  178 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~  178 (198)
                      |.||+++|..|++.+.
T Consensus       153 g~gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         153 GENVNDVFLGIGEKIP  168 (170)
T ss_dssp             CTTHHHHHHHHHTTSC
T ss_pred             CcCHHHHHHHHHHHhc
Confidence            9999999999987653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.8e-35  Score=204.15  Aligned_cols=165  Identities=30%  Similarity=0.556  Sum_probs=127.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEE--ECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV--VDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      +.+||+++|.+|||||||+++|.++.+...+.++.+........  .+...+.+.+||++|++.+...+..+++.+++++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            35899999999999999999999999988888877655443332  2344577889999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE  157 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (198)
                      +|||++++.++..+ ..|...+....     ++.|+++|+||+|+.+...         .++.+++++++..++..+|++
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~---------~v~~~~~~~~~~~~~~~~~~e  150 (175)
T d1ky3a_          81 LVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKK---------IVSEKSAQELAKSLGDIPLFL  150 (175)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGC---------CSCHHHHHHHHHHTTSCCEEE
T ss_pred             EEeecccccccchh-hhcchhhhhhhhhcccccCcEEEEecccchhhhhc---------chhHHHHHHHHHHcCCCeEEE
Confidence            99999999999888 77877765432     4789999999999976432         267788899999987668999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcC
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +||++|.|++++|.+|++.+++
T Consensus       151 ~SA~~g~gv~e~f~~l~~~~l~  172 (175)
T d1ky3a_         151 TSAKNAINVDTAFEEIARSALQ  172 (175)
T ss_dssp             EBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHh
Confidence            9999999999999999998754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.6e-34  Score=198.98  Aligned_cols=164  Identities=29%  Similarity=0.634  Sum_probs=145.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      ..+||+++|.+|+|||||++++.++.+...+.++....+ ...+.+++..+.+.+||+||++.+..++..++.++|++++
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999999888877775544 5566788899999999999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSK  161 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  161 (198)
                      |||++++.++..+ ..|...+....  ...|+++++||.|.....           +..++++.+++.+++ +|+++||+
T Consensus        86 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~-----------v~~~~~~~~~~~~~~-~~~e~Sa~  152 (177)
T d1x3sa1          86 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENRE-----------VDRNEGLKFARKHSM-LFIEASAK  152 (177)
T ss_dssp             EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSCC-----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred             EEECCCccccccc-hhhhhhhcccccccceeeEEEeecccccccc-----------ccHHHHHHHHHHCCC-EEEEEeCC
Confidence            9999999999998 77777776654  478999999999986543           788899999999998 89999999


Q ss_pred             CCCCHHHHHHHHHHHHcCCC
Q 029144          162 TQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       162 ~~~~i~~~~~~i~~~~~~~~  181 (198)
                      +|+|++++|+++++.+.+.+
T Consensus       153 tg~gv~e~f~~l~~~l~~~p  172 (177)
T d1x3sa1         153 TCDGVQCAFEELVEKIIQTP  172 (177)
T ss_dssp             TCTTHHHHHHHHHHHHHTSG
T ss_pred             CCCCHHHHHHHHHHHHccCc
Confidence            99999999999999888664

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-34  Score=199.00  Aligned_cols=161  Identities=32%  Similarity=0.646  Sum_probs=136.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      -+||+++|.+|+|||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.+||+||++.|..++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999998888886555 56777888899999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      ||.+++++++.+ ..|...+.... ...|++++++|.|+.+..           ...++++.++..++. +|++|||++|
T Consensus        82 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~~  148 (166)
T d1g16a_          82 YDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMETRV-----------VTADQGEALAKELGI-PFIESSAKND  148 (166)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTCC-----------SCHHHHHHHHHHHTC-CEEECBTTTT
T ss_pred             EECCCccCHHHH-HhhhhhhhccccCcceeeeecchhhhhhhh-----------hhHHHHHHHHHhcCC-eEEEECCCCC
Confidence            999999999998 55555555444 688999999999987654           678899999999998 7999999999


Q ss_pred             CCHHHHHHHHHHHHcC
Q 029144          164 QNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       164 ~~i~~~~~~i~~~~~~  179 (198)
                      .|++++|.+|++.+.+
T Consensus       149 ~~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         149 DNVNEIFFTLAKLIQE  164 (166)
T ss_dssp             BSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-34  Score=199.55  Aligned_cols=161  Identities=25%  Similarity=0.453  Sum_probs=133.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCC-CCCcc-ccceeEEEEECCeEEEEEEEeCCC---ccCcccccccccCCCc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTV-FDNFSANVVVDGSTVNLGLWDTAG---QEDYNRLRPLSYRGAD   79 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~-~~~t~-~~~~~~~~~~~~~~~~l~i~D~~G---~~~~~~~~~~~~~~~~   79 (198)
                      ..+||+++|.+|+|||||++++....+... ..+++ .+.+...+.+++..+.+.+||+++   +++|  ++..+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            478999999999999999999998765432 22333 455677788899999999999775   4444  4567889999


Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144           80 VFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE  157 (198)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (198)
                      ++|+|||++++.++..+ ..|...+....  ++.|+++|+||+|+.+.+.          ++.++++.++..+++ +|++
T Consensus        80 ~~ilvfd~t~~~s~~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e  147 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCRE----------VSVSEGRACAVVFDC-KFIE  147 (172)
T ss_dssp             EEEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC----------SCHHHHHHHHHHHTC-EEEE
T ss_pred             eeeeeecccccchhhhh-hhhhhhhhhccccCCceEEEEecccccccccc----------ccHHHHHHHHHHcCC-eEEE
Confidence            99999999999999999 67766666543  6899999999999987654          888999999999998 8999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcC
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +||++|.|++++|..|++.+..
T Consensus       148 ~Sak~g~~i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         148 TSAAVQHNVKELFEGIVRQVRL  169 (172)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EeCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999998743

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-34  Score=197.52  Aligned_cols=164  Identities=35%  Similarity=0.648  Sum_probs=139.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL   82 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i   82 (198)
                      ...+||+|+|.+|||||||++++..+.+.+.+.+|..... ......++..+.+.+||++|+..+...+...+..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            3568999999999999999999999999988888886554 555667888899999999999999999999999999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE  157 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (198)
                      +++|.+++.++..+ ..|...+....     ++.|+++|+||+|+.+..           +..+++++++++.+..+|++
T Consensus        84 ~~~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~-----------v~~~~~~~~~~~~~~~~~~e  151 (174)
T d1wmsa_          84 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-----------VSTEEAQAWCRDNGDYPYFE  151 (174)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHTTCCCEEE
T ss_pred             EEEeeecccccchh-hhHHHHHHHHhccccCCCceEEEeccccchhhcc-----------CcHHHHHHHHHHcCCCeEEE
Confidence            99999999999988 77877665432     478999999999996532           78889999999876558999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcC
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      |||++|.||+++|.++++.++.
T Consensus       152 ~Sak~~~gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         152 TSAKDATNVAAAFEEAVRRVLA  173 (174)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EcCCCCcCHHHHHHHHHHHHhc
Confidence            9999999999999999998753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=207.86  Aligned_cols=163  Identities=37%  Similarity=0.628  Sum_probs=139.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEEC----------CeEEEEEEEeCCCccCccccccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVD----------GSTVNLGLWDTAGQEDYNRLRPL   73 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~----------~~~~~l~i~D~~G~~~~~~~~~~   73 (198)
                      .-+||+++|.+|||||||+++|.++.+.+.+.++....+ ...+.++          ...+.+.+||++|++.|..++..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            458999999999999999999999998887777765443 3333322          24578999999999999999999


Q ss_pred             ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcC
Q 029144           74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIG  151 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (198)
                      +++++|++|+|||++++.+++.+ ..|...+....  +..|+++|+||+|+.+.+.          ++.+++.+++++++
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~----------v~~~e~~~~~~~~~  152 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQRE----------VNERQARELADKYG  152 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCC----------SCHHHHHHHHHHTT
T ss_pred             HHhcCCEEEEEEeccccccceee-eeccchhhhhccCCCceEEEEeeeccchhhhc----------chHHHHHHHHHHcC
Confidence            99999999999999999999998 67777666543  5789999999999987654          88899999999999


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      + +|+++||++|.|++++|.++++.+.+
T Consensus       153 ~-~~~e~Sak~~~~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         153 I-PYFETSAATGQNVEKAVETLLDLIMK  179 (186)
T ss_dssp             C-CEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             C-EEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            8 79999999999999999999998853

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-33  Score=194.53  Aligned_cols=158  Identities=30%  Similarity=0.574  Sum_probs=137.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCccc-ccccccCCCcEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYNR-LRPLSYRGADVFL   82 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~~~~i   82 (198)
                      |.+||+++|.+|||||||++++..+.+...+.++.+... .....+......+.+||++|...+.. .+..+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            568999999999999999999999999888888886555 56667888889999999999877654 5667889999999


Q ss_pred             EEEECCChhhHHHHHHHHHHHHhhhC--CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           83 LAFSLISKASYENVAKKWIPELRHYA--PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      +|||++++++++.+ ..|...+....  ++.|+++|+||+|+.+...          ++.++++++++.+++ +|+++||
T Consensus        81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~SA  148 (165)
T d1z06a1          81 FVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQ----------VPTDLAQKFADTHSM-PLFETSA  148 (165)
T ss_dssp             EEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCC----------SCHHHHHHHHHHTTC-CEEECCS
T ss_pred             EEEEeehhhhhhhh-hhhhHHHHhhccCCCCeEEEEeccccchhccc----------hhHHHHHHHHHHCCC-EEEEEec
Confidence            99999999999998 77777776654  5899999999999987654          889999999999998 7999999


Q ss_pred             CC---CCCHHHHHHHHH
Q 029144          161 KT---QQNVKAVFDAAI  174 (198)
Q Consensus       161 ~~---~~~i~~~~~~i~  174 (198)
                      ++   ++||+++|.+|+
T Consensus       149 kt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         149 KNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             SSGGGGSCHHHHHHHHC
T ss_pred             ccCCcCcCHHHHHHHhC
Confidence            87   569999998874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.5e-33  Score=197.56  Aligned_cols=167  Identities=28%  Similarity=0.541  Sum_probs=142.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccc-eeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDN-FSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      -+||+|+|.+|||||||++++.++.+...+.+|.+.. ........+..+.+.+||++|+..+...+..++..+++++++
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            3799999999999999999999999999888888544 455666778889999999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS  159 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (198)
                      +|.+++.++..+ ..|+..+....     .+.|+++|+||+|+.+..           +..++...++...+..+|++||
T Consensus        82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~e~S  149 (184)
T d1vg8a_          82 FDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-----------VATKRAQAWCYSKNNIPYFETS  149 (184)
T ss_dssp             EETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-----------SCHHHHHHHHHHTTSCCEEECB
T ss_pred             ecccchhhhhcc-hhhHHHHHHHhccccccCCCEEEEEEeecccccc-----------hhHHHHHHHHHHhcCCeEEEEc
Confidence            999999999998 78877665432     368999999999996643           6677777777665444899999


Q ss_pred             cCCCCCHHHHHHHHHHHHcCCCcch
Q 029144          160 SKTQQNVKAVFDAAIKVVLQPPKNK  184 (198)
Q Consensus       160 a~~~~~i~~~~~~i~~~~~~~~~~~  184 (198)
                      |++|.||+++|.++++.+.+.+.+.
T Consensus       150 ak~~~gI~e~f~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         150 AKEAINVEQAFQTIARNALKQETEV  174 (184)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhccccc
Confidence            9999999999999999887755444

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-33  Score=194.03  Aligned_cols=163  Identities=21%  Similarity=0.308  Sum_probs=135.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      ..+||+++|.+|||||||+++++++.+.. +.++....+...+.+++..+.+.+||++|+..+.     +++++|++|+|
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV   77 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV   77 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence            46999999999999999999999998754 4567777777788899999999999999987643     67889999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC----CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEecc
Q 029144           85 FSLISKASYENVAKKWIPELRHYA----PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSS  160 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  160 (198)
                      ||++++.||+.+ ..|...+....    ++.|+++|+||.|+....        .+.++.++++.++.+....+|+||||
T Consensus        78 fd~~~~~Sf~~~-~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SA  148 (175)
T d2bmja1          78 FSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASS--------PRVVGDARARALCADMKRCSYYETCA  148 (175)
T ss_dssp             EETTCHHHHHHH-HHHHHHHHHHCC--CCCCEEEEEEECTTCCSSS--------CCCSCHHHHHHHHHTSTTEEEEEEBT
T ss_pred             eecccchhhhhh-HHHHHHHHHHhhcccCCccEEEEeeecCcchhh--------hcchhHHHHHHHHHHhCCCeEEEeCC
Confidence            999999999998 77887776543    478999999999985432        23477788888876654448999999


Q ss_pred             CCCCCHHHHHHHHHHHHcCCCc
Q 029144          161 KTQQNVKAVFDAAIKVVLQPPK  182 (198)
Q Consensus       161 ~~~~~i~~~~~~i~~~~~~~~~  182 (198)
                      ++|.|++++|..+++.+....+
T Consensus       149 k~~~~v~~~F~~l~~~i~~~~~  170 (175)
T d2bmja1         149 TYGLNVDRVFQEVAQKVVTLRK  170 (175)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHhhh
Confidence            9999999999999998865543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=193.30  Aligned_cols=162  Identities=20%  Similarity=0.267  Sum_probs=125.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +++||+++|++|+|||||+++|..+.+.+.+.||.+..+. .+..++  +.+.+||+||++.+...+..++.+++++++|
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR-KITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE-EEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee-eeeeee--EEEEEeeccccccccccccccccccchhhcc
Confidence            3689999999999999999999999998888888765443 344555  6788999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCC
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQ  163 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  163 (198)
                      ||+++++++......|...+.... ++.|+++|+||+|+.+...       ...+........+...++ +++++||++|
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~-------~~~i~~~~~~~~~~~~~~-~~~e~Sa~~g  149 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD-------EKELIEKMNLSAIQDREI-CCYSISCKEK  149 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC-------HHHHHHHTTGGGCCSSCE-EEEECCTTTC
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhh-------HHHHHHHHHHHHHHhCCC-EEEEEeCcCC
Confidence            999999999998555554555433 7899999999999975421       000111111112223344 6899999999


Q ss_pred             CCHHHHHHHHHHHH
Q 029144          164 QNVKAVFDAAIKVV  177 (198)
Q Consensus       164 ~~i~~~~~~i~~~~  177 (198)
                      +|++++|++|++.+
T Consensus       150 ~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         150 DNIDITLQWLIQHS  163 (164)
T ss_dssp             TTHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHcc
Confidence            99999999999853

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.98  E-value=4.8e-31  Score=181.55  Aligned_cols=158  Identities=16%  Similarity=0.246  Sum_probs=123.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|.+|+|||||+++|.++.+ ..+.+|.+... ..+..++  +.+.+||+||++.++..+..+++.++++++|
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNI-KTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEE-EEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeee-eeccccc--cceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            568999999999999999999988765 34455554332 2344455  6778999999999999999999999999999


Q ss_pred             EECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-----HHcCCCEEEEe
Q 029144           85 FSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-----KLIGAPVYIEC  158 (198)
Q Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~  158 (198)
                      +|+++..++......|...+.... .+.|+++|+||+|+.+..            ..++.....     ...++ ++++|
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~  143 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHHW-RIQGC  143 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEEEC
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc------------CHHHHHHHHHhhhhhcCCC-EEEEE
Confidence            999999999988666666655433 689999999999997643            223322221     11233 68999


Q ss_pred             ccCCCCCHHHHHHHHHHHHcC
Q 029144          159 SSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       159 Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ||++|+|++++|++|++.+..
T Consensus       144 Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         144 SAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHHHc
Confidence            999999999999999998764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=6.1e-31  Score=183.84  Aligned_cols=160  Identities=16%  Similarity=0.211  Sum_probs=119.1

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      ...+.+||+++|.+|||||||++++..+.+.. ..+|.+... ......+  +.+.+||+||++.+...+..++.+++++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNV-ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCE-EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEE-EEEeeCC--EEEEEEecccccccchhHHhhhccceeE
Confidence            35678999999999999999999998776543 234443322 2333444  6778999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-----HHHHcCCCEE
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-----LRKLIGAPVY  155 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  155 (198)
                      ++|+|++++.++......|...+.... .+.|+++|+||+|+.+.            .+..+..+     .+...++ ++
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~------------~~~~~i~~~~~~~~~~~~~~-~~  155 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA------------LSASEVSKELNLVELKDRSW-SI  155 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC------------CCHHHHHHHTTTTTCCSSCE-EE
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc------------cCHHHHHHHHHHHHHhhCCC-EE
Confidence            999999999999988444545555443 58999999999999653            23333322     1223344 68


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHc
Q 029144          156 IECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      ++|||++|+|++++|++|++.+.
T Consensus       156 ~e~SA~~g~gv~e~~~~l~~~i~  178 (182)
T d1moza_         156 VASSAIKGEGITEGLDWLIDVIK  178 (182)
T ss_dssp             EEEBGGGTBTHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999998874

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=1.8e-31  Score=185.56  Aligned_cols=159  Identities=19%  Similarity=0.254  Sum_probs=119.6

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEE
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF   81 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~   81 (198)
                      ++++.+||+++|.+|||||||++++.++.+... .++.+. ....+...+  +.+.+||++|++.+...+..+++.+|++
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~-~~~~i~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGF-NIKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTE-EEEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeee-eEEEeccCC--eeEeEeeccccccchhHHHHHhhcccee
Confidence            356789999999999999999999998876432 222222 122334444  7788999999999999999999999999


Q ss_pred             EEEEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHH-----HHHHcCCCEE
Q 029144           82 LLAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEE-----LRKLIGAPVY  155 (198)
Q Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  155 (198)
                      ++|||+++..++......|........ .+.|+++|+||+|+.+..            ......+     .+...++ ++
T Consensus        88 i~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~  154 (176)
T d1fzqa_          88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRDRVW-QI  154 (176)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EE
T ss_pred             EEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc------------cHHHHHHHHHHHHHHhcCC-EE
Confidence            999999999999998444444443333 589999999999997643            2222222     1122333 68


Q ss_pred             EEeccCCCCCHHHHHHHHHHHH
Q 029144          156 IECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      +++||++|+|++++|++|++.+
T Consensus       155 ~~~SA~tg~gv~e~~~~l~~~i  176 (176)
T d1fzqa_         155 QSCSALTGEGVQDGMNWVCKNV  176 (176)
T ss_dssp             EECCTTTCTTHHHHHHHHHHTC
T ss_pred             EEEeCCCCCCHHHHHHHHHhcC
Confidence            9999999999999999998753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=2.9e-31  Score=184.04  Aligned_cols=157  Identities=16%  Similarity=0.199  Sum_probs=120.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.+|||||||++++..+.+... .+|.+.. ........  +.+.+||+||++.++..+..++++++++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~-~~t~~~~-~~~~~~~~--~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~   85 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVGFN-VETVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   85 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEE-EEETTEE-EEEEEETT--EEEEEEEESCCGGGHHHHGGGTTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCc-cceeeee-EEEeeccc--eeeEEecCCCcchhhhHHHhhhcccceEEE
Confidence            4679999999999999999999998775432 2333222 22233344  778899999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHH-H----HHHHcCCCEEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE-E----LRKLIGAPVYIE  157 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~  157 (198)
                      |+|+++.+++..+...|...+.... .+.|+++++||+|+.+..            ...+.. .    .+...++ .+++
T Consensus        86 v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~e  152 (173)
T d1e0sa_          86 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM------------KPHEIQEKLGLTRIRDRNW-YVQP  152 (173)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEEE
T ss_pred             EEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccc------------cHHHHHHHHHHHHHHhCCC-EEEE
Confidence            9999999999998555555555443 689999999999997642            222222 2    2222344 6899


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 029144          158 CSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      |||++|+||+++|++|.+.+
T Consensus       153 ~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         153 SCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             CBTTTTBTHHHHHHHHHHHC
T ss_pred             eeCCCCcCHHHHHHHHHHhc
Confidence            99999999999999998764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.96  E-value=2.7e-29  Score=171.49  Aligned_cols=159  Identities=15%  Similarity=0.198  Sum_probs=120.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEE
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (198)
                      +||+++|++|||||||++++.++.+...+..+..    .....+...+.+.+||++|...+...+..++.+++++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d   76 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEE
Confidence            6999999999999999999998887655433332    222334455788899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCC
Q 029144           87 LISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQN  165 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  165 (198)
                      ..++.++......+...+.... ...|+++++||+|+.+...       ...+.......++...+. +++++||++|+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~-------~~~i~~~~~~~~~~~~~~-~~~~~SAktg~g  148 (160)
T d1r8sa_          77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN-------AAEITDKLGLHSLRHRNW-YIQATCATSGDG  148 (160)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHTTGGGCSSCCE-EEEECBTTTTBT
T ss_pred             ecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccccc-------HHHHHHHHHHHHHhhCCC-EEEEeECCCCCC
Confidence            9999999988555555544433 5789999999999976431       001111222223334455 799999999999


Q ss_pred             HHHHHHHHHHHH
Q 029144          166 VKAVFDAAIKVV  177 (198)
Q Consensus       166 i~~~~~~i~~~~  177 (198)
                      ++++|++|++.+
T Consensus       149 i~e~~~~l~~~l  160 (160)
T d1r8sa_         149 LYEGLDWLSNQL  160 (160)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.7e-26  Score=160.52  Aligned_cols=157  Identities=16%  Similarity=0.117  Sum_probs=116.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc--------cccc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR--------PLSY   75 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~~   75 (198)
                      .-.|+++|.+|+|||||++++++...  ......++...........+  ..+.+||+||.......+        ...+
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeee--eeeeecccccccccccccchhccccccccc
Confidence            34799999999999999999998753  23344445444455555666  456799999976543222        2346


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144           76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY  155 (198)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (198)
                      +++|++++|+|++++.+..+  ..|...++....+.|+++|+||+|+.+..             .+....+.+..+...+
T Consensus        83 ~~ad~il~v~D~~~~~~~~~--~~i~~~l~~~~~~~piilv~NK~Dl~~~~-------------~~~~~~~~~~~~~~~~  147 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYP-------------EEAMKAYHELLPEAEP  147 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSH-------------HHHHHHHHHTSTTSEE
T ss_pred             ccccceeeeechhhhhcccc--cchhhheeccccchhhhhhhcccccccCH-------------HHHHHHHHhhcccCce
Confidence            78999999999988765443  46677777766789999999999996532             2334455555666678


Q ss_pred             EEeccCCCCCHHHHHHHHHHHHcC
Q 029144          156 IECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      +++||++|.|+++++++|++.+.+
T Consensus       148 ~~iSA~~~~gi~~L~~~i~~~lpe  171 (178)
T d1wf3a1         148 RMLSALDERQVAELKADLLALMPE  171 (178)
T ss_dssp             EECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             EEEecCCCCCHHHHHHHHHHhCCC
Confidence            999999999999999999988754

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.94  E-value=7.9e-26  Score=155.24  Aligned_cols=165  Identities=13%  Similarity=0.173  Sum_probs=121.9

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.+|||||||++++.++.+...+ ++... .......++  +.+.+||.+|.+.+...+...+...+++++
T Consensus         3 ~ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           3 TREMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIGF-NVETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSSE-EEEEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhCCCCccee-cccce-eeeeeccCc--eEEEEeeccccccccccchhhhhhhhhhhh
Confidence            35599999999999999999999999876532 33322 222233444  667799999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCC
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKT  162 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  162 (198)
                      ++|+.+..++......+...+.... ...|+++++||.|+.....       ...+.......++...++ +|+++||++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-------~~~i~~~~~~~~~~~~~~-~~~~~SA~~  150 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-------SSEMANSLGLPALKDRKW-QIFKTSATK  150 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-------HHHHHHHHTGGGCTTSCE-EEEECCTTT
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-------HHHHHHHHHHHHHhcCCC-EEEEEeCCC
Confidence            9999998888887555555554433 6899999999999976431       000111112223334454 799999999


Q ss_pred             CCCHHHHHHHHHHHHcCC
Q 029144          163 QQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       163 ~~~i~~~~~~i~~~~~~~  180 (198)
                      |.|++++|++|++.+.++
T Consensus       151 g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         151 GTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             CTTHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhC
Confidence            999999999999987543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=8.3e-26  Score=156.63  Aligned_cols=157  Identities=17%  Similarity=0.236  Sum_probs=114.0

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+.+||+++|.+|||||||++++.++.+.... ++.. .........+  +.+.+||++|++.+...+...+..++++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~-~~~~-~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG-SNVEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-CCSC-SSCEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCccc-cccc-eeEEEEeecc--eEEEEeccccccccccchhhhhccceeeee
Confidence            56799999999999999999999998765332 2222 2233333444  667799999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH-----HHcCCCEEEE
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR-----KLIGAPVYIE  157 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  157 (198)
                      ++|.++..++......+........ .+.|+++|+||+|+....            ...+.....     ...+. ++++
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~  155 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM------------TVAEISQFLKLTSIKDHQW-HIQA  155 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTGGGCCSSCE-EEEE
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC------------cHHHHHHHHHHHhhHhcCC-EEEE
Confidence            9999999999877433333333322 689999999999997643            222222221     22333 7999


Q ss_pred             eccCCCCCHHHHHHHHHHHH
Q 029144          158 CSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      +||++|+|++++|++|++.+
T Consensus       156 ~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         156 CCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             CBTTTTBTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999876

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=2.7e-26  Score=161.37  Aligned_cols=167  Identities=17%  Similarity=0.181  Sum_probs=116.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|..|||||||+++|..+.+++.+.+      ...+....  +.+++||++|++.+.+.|..+++.++++++|
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~------~~~~~~~~--~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV------ETHFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE------EEEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccEE------EEEEEeee--eeeeeeccccccccccchhhcccCCceeeeE
Confidence            579999999999999999999998776544321      12233344  7788999999999999999999999999999


Q ss_pred             EECCChhhH----------HHHHHHHHHHHhhhC-CCCCEEEEeecCCccccccccc-----CCCCCccccHHHHH----
Q 029144           85 FSLISKASY----------ENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLA-----DHPGAVPITTAQGE----  144 (198)
Q Consensus        85 ~d~~~~~s~----------~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~-----~~~~~~~~~~~~~~----  144 (198)
                      +|+++..++          .+....|...+.... .+.|+++++||+|+........     ...........+..    
T Consensus        73 ~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (195)
T d1svsa1          73 VALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQ  152 (195)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHH
T ss_pred             EeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHH
Confidence            999887654          223355666665544 6899999999999865432110     00111111222221    


Q ss_pred             -HHHHHc-----CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          145 -ELRKLI-----GAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       145 -~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                       .+....     ....+++|||+++.||+++|+.+.+.+++
T Consensus       153 ~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         153 CQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence             111111     11246789999999999999999887653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=7.6e-26  Score=159.60  Aligned_cols=170  Identities=18%  Similarity=0.129  Sum_probs=123.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|..|||||||+++|..+.+  .+.||.+..+.   .+....+.+.+||++|++.+...|..+++.+++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~---~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEY---PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEE---EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEE---EEeccceeeeeccccccccccccccccccccceeeEe
Confidence            579999999999999999999998876  35688765432   2333446788999999999999999999999999999


Q ss_pred             EECCChh----------hHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccccccc------CCCCCccccHHHHHHHH
Q 029144           85 FSLISKA----------SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLA------DHPGAVPITTAQGEELR  147 (198)
Q Consensus        85 ~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~~~  147 (198)
                      +|.++..          .+.+....|...+.... .+.|+++++||+|+........      ........+......+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  155 (200)
T d2bcjq2          76 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI  155 (200)
T ss_dssp             EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHH
T ss_pred             eeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHH
Confidence            9998754          23344478888887665 7999999999999975433110      11111122333333322


Q ss_pred             H----Hc-----CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          148 K----LI-----GAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       148 ~----~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      .    ..     ....++++||++|.|++++|+.+.+.+.+
T Consensus       156 ~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         156 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            1    11     11146789999999999999999887753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.6e-24  Score=146.89  Aligned_cols=151  Identities=15%  Similarity=0.205  Sum_probs=113.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEEC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL   87 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   87 (198)
                      ||+++|.+|||||||++++.++.+.. +.||..... ......+  ..+.+||++|...+...+..++..++++++++|.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   77 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS-EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDA   77 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE-EEECCTT--CCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE-EEeccCC--eeEEEEeeccchhhhhhHhhhhhheeeeeeeccc
Confidence            79999999999999999999988653 345443222 2223333  5567999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH------------HHcCCCE
Q 029144           88 ISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR------------KLIGAPV  154 (198)
Q Consensus        88 ~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~  154 (198)
                      ++..++......+........ .+.|+++++||.|+....            ...+..+..            ...++ .
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~~~-~  144 (166)
T d2qtvb1          78 ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV------------SEAELRSALGLLNTTGSQRIEGQRPV-E  144 (166)
T ss_dssp             TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC------------CHHHHHHHHTCSSCCC---CCSSCCE-E
T ss_pred             cchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC------------CHHHHHHHhhhhhhhHHHhhcccCCC-E
Confidence            999998888544444443333 589999999999997642            222222211            11223 6


Q ss_pred             EEEeccCCCCCHHHHHHHHHH
Q 029144          155 YIECSSKTQQNVKAVFDAAIK  175 (198)
Q Consensus       155 ~~~~Sa~~~~~i~~~~~~i~~  175 (198)
                      +++|||++|+|++++|++|.+
T Consensus       145 ~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         145 VFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEBTTTTBSHHHHHHHHTT
T ss_pred             EEEeeCCCCCCHHHHHHHHhC
Confidence            899999999999999999975

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.92  E-value=5.2e-24  Score=148.23  Aligned_cols=157  Identities=17%  Similarity=0.219  Sum_probs=112.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLL   83 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (198)
                      .+..||+++|.+|||||||++++..+.+...+ ++.... ...+.+++  ..+.+||++++..+...+.......+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~-~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-PTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF   86 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee-cccccc-eeEEEecc--cccccccccchhhhhhHHhhhhcccceeee
Confidence            46799999999999999999999988775443 333322 23345566  456699999999999999999999999999


Q ss_pred             EEECCChhhHHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHH--------------
Q 029144           84 AFSLISKASYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRK--------------  148 (198)
Q Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  148 (198)
                      ++|+.+...+......+........ .+.|+++++||.|+...            .+..+......              
T Consensus        87 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~------------~~~~~i~~~~~~~~~~~~~~~~~~~  154 (186)
T d1f6ba_          87 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSLK  154 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred             eeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc------------CCHHHHHHHHhhcccchhhhhhhHH
Confidence            9999999998888555554444333 68999999999999764            22233222221              


Q ss_pred             ---HcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          149 ---LIGAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       149 ---~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                         ..+. ++++|||++|+|++|+|++|++.+
T Consensus       155 ~~~~~~~-~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         155 ELNARPL-EVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TCCSCCE-EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             HhhcCCC-EEEEEeCCCCCCHHHHHHHHHHhh
Confidence               1122 689999999999999999998764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=6.2e-25  Score=149.97  Aligned_cols=150  Identities=20%  Similarity=0.281  Sum_probs=111.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc--------cccccC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL--------RPLSYR   76 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~~   76 (198)
                      +||+++|.+|+|||||++++++....  .....++.......+...+  ..+.+||+||.......        ...++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999976542  2333344455555566666  45669999996544321        224467


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      .+|++++++|..+..++... ..|...+.....+.|+++|+||+|+.++..         ..         .+....+++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~---------~~---------~~~~~~~~~  140 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPA-EIWPEFIARLPAKLPITVVRNKADITGETL---------GM---------SEVNGHALI  140 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHH-HHCHHHHHHSCTTCCEEEEEECHHHHCCCC---------EE---------EEETTEEEE
T ss_pred             hccccceeeccccccchhhh-hhhhhhhhhcccccceeeccchhhhhhhHH---------HH---------HHhCCCcEE
Confidence            89999999999988877766 566666666656899999999999976432         01         112233799


Q ss_pred             EeccCCCCCHHHHHHHHHHHH
Q 029144          157 ECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      ++||++|.|+++++++|.+.+
T Consensus       141 ~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         141 RLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHC
T ss_pred             EEECCCCCCHHHHHHHHHhhC
Confidence            999999999999999999864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=2.3e-24  Score=149.80  Aligned_cols=159  Identities=18%  Similarity=0.151  Sum_probs=101.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCC-CCCCccccceeEEEEECCeEEEEEEEeCCCccCccc----c---cccccCCCc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPT-DYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----L---RPLSYRGAD   79 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~---~~~~~~~~~   79 (198)
                      .|+++|.+|||||||+++|++..... ....++. ..............+++||+||......    .   ....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTL-SPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSS-CCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCce-eeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            58999999999999999998654322 1122221 1122222222234567999999543211    1   113356789


Q ss_pred             EEEEEEECCChh--hHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144           80 VFLLAFSLISKA--SYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE  157 (198)
Q Consensus        80 ~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (198)
                      ++++++|+....  ..... ..++........+.|+++|+||+|+.+..            ..++..+.....+. +++.
T Consensus        82 ~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~NK~D~~~~~------------~~~~~~~~~~~~~~-~~~~  147 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETL-RKEVGAYDPALLRRPSLVALNKVDLLEEE------------AVKALADALAREGL-AVLP  147 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHH-HHHHHHHCHHHHHSCEEEEEECCTTSCHH------------HHHHHHHHHHTTTS-CEEE
T ss_pred             hhhhhcccccccccchhhh-hhhhhccccccchhhhhhhhhhhhhhhHH------------HHHHHHHHHHhcCC-eEEE
Confidence            999999986543  22222 23333332222468999999999997653            22334444455566 7999


Q ss_pred             eccCCCCCHHHHHHHHHHHHcCCC
Q 029144          158 CSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       158 ~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      +||++|.|++++++.|.+.+....
T Consensus       148 iSA~tg~gid~L~~~i~~~l~~~~  171 (180)
T d1udxa2         148 VSALTGAGLPALKEALHALVRSTP  171 (180)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             EEcCCCCCHHHHHHHHHHHHhhcC
Confidence            999999999999999999886543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.4e-24  Score=151.99  Aligned_cols=168  Identities=17%  Similarity=0.155  Sum_probs=110.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|.+|||||||++++.   +.+.+.||.+... ..+....  +.+.+||++|++.+...|..+++++++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~-~~~~~~~--~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHE-YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEE-EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEE-EEEeeee--eeeeeecccceeeecccccccccccceeEEE
Confidence            46899999999999999999994   3456677776332 2344454  6778999999999999999999999999999


Q ss_pred             EECCChhh----------HHHHHHHHHHHHhhhC-CCCCEEEEeecCCcccccccccC------CCCCccccHHHHHHHH
Q 029144           85 FSLISKAS----------YENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLAD------HPGAVPITTAQGEELR  147 (198)
Q Consensus        85 ~d~~~~~s----------~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~~------~~~~~~~~~~~~~~~~  147 (198)
                      +|.++..+          +......|...+.... .++|+++++||+|+.+.......      .........+.+.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            99987532          3444344444555433 68999999999998754321100      0111112223333322


Q ss_pred             HH-----------cCCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          148 KL-----------IGAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       148 ~~-----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ..           ... .++++||+++.||+++|+.+.+.+.+
T Consensus       155 ~~~f~~~~~~~~~~~i-y~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         155 VECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCce-EEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            22           112 35679999999999999998877643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=4.2e-24  Score=147.29  Aligned_cols=155  Identities=22%  Similarity=0.185  Sum_probs=103.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc---------cccccccC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------RLRPLSYR   76 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~~~~~~   76 (198)
                      .|+++|.+|+|||||+++|++...  ......++.......+....  ..+.+||++|.....         ......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccc--cccccccccceeeeeccccccccccccccccc
Confidence            689999999999999999987543  23344444444445555555  556799999943221         22233467


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      .+|+++++.|.+.......  ..+...+...  ++|+++|+||+|+.++.            ..+...++ ...+...++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~--~~~~~~l~~~--~~pviiv~NK~Dl~~~~------------~~~~~~~~-~~~~~~~~i  142 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED--ESLADFLRKS--TVDTILVANKAENLREF------------EREVKPEL-YSLGFGEPI  142 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH--HHHHHHHHHH--TCCEEEEEESCCSHHHH------------HHHTHHHH-GGGSSCSCE
T ss_pred             cCcEEEEeecccccccccc--cccccccccc--cccccccchhhhhhhhh------------hhHHHHHH-HhcCCCCeE
Confidence            8999999999877665544  4666677766  89999999999996532            22222222 333444688


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ++||++|.|+++++++|.+.+.++.
T Consensus       143 ~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         143 PVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             EEecCCCCCHHHHHHHHHHhCCCCC
Confidence            9999999999999999999875543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=6.5e-23  Score=143.04  Aligned_cols=157  Identities=21%  Similarity=0.202  Sum_probs=105.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCccccc-----------
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLR-----------   71 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-----------   71 (198)
                      ..+||+++|.+|+|||||++++++...  ...+..++.........+++.  .+.++|+||.......+           
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCc--eeeeeccCCccccccccccccccchhHH
Confidence            469999999999999999999997653  344445555555556667774  45699999965433222           


Q ss_pred             -ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHH---
Q 029144           72 -PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELR---  147 (198)
Q Consensus        72 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---  147 (198)
                       ...++.+|++++|+|++.+.....  ..+...+...  +.|+++|+||+|+.....          ...++..+..   
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~--~~~~~~~~~~--~~~~i~v~nK~D~~~~~~----------~~~~~~~~~~~~~  150 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQD--QRMAGLMERR--GRASVVVFNKWDLVVHRE----------KRYDEFTKLFREK  150 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCEEEEEEECGGGSTTGG----------GCHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEeecccccchhhH--HHHHHHHHHc--CCceeeeccchhhhcchh----------hhhhhHHHHHHHH
Confidence             223467899999999987655443  3555666665  899999999999976543          2223322222   


Q ss_pred             -HHcCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          148 -KLIGAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       148 -~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                       ...+..+++++||++|.|++++++.|.+.+
T Consensus       151 ~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         151 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             CGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hcccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence             223455789999999999999999997765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=3.9e-24  Score=148.54  Aligned_cols=162  Identities=19%  Similarity=0.124  Sum_probs=108.5

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccc--------cceeEEEEECCeEEEEEEEeCCCccCcccccccccC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVF--------DNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYR   76 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~--------~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~   76 (198)
                      +.++|+++|++++|||||++++.+.........+..        .........++  ..+.++|+||+..|.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCC--ccccccccccccccccchhhhhh
Confidence            557999999999999999999986432221111111        11112233344  55679999999988888888889


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH---cCCC
Q 029144           77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL---IGAP  153 (198)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  153 (198)
                      .+|++++|+|+.++...+..  +....+...  ++|+++|+||+|+.+...        .....+..+.+...   ....
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~--~~~~~~~~~--~~p~iiv~NKiD~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  149 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTG--EHMLILDHF--NIPIIVVITKSDNAGTEE--------IKRTEMIMKSILQSTHNLKNS  149 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCBCEEEECTTSSCHHH--------HHHHHHHHHHHHHHSSSGGGC
T ss_pred             hccccccccccccccchhhh--hhhhhhhhc--CCcceeccccccccCHHH--------HHHHHHHHHHHHHHhhcCCCC
Confidence            99999999999987554433  333455555  899999999999976432        00011122222222   1223


Q ss_pred             EEEEeccCCCCCHHHHHHHHHHHHcCC
Q 029144          154 VYIECSSKTQQNVKAVFDAAIKVVLQP  180 (198)
Q Consensus       154 ~~~~~Sa~~~~~i~~~~~~i~~~~~~~  180 (198)
                      +++++||++|+|++++++.|.+.+...
T Consensus       150 ~iv~iSA~~g~gi~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         150 SIIPISAKTGFGVDELKNLIITTLNNA  176 (179)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred             eEEEEEccCCcCHHHHHHHHHhcCCcc
Confidence            689999999999999999999887543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=2.8e-23  Score=141.48  Aligned_cols=148  Identities=19%  Similarity=0.218  Sum_probs=102.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC--CCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc--cc-------ccccc
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF--PTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN--RL-------RPLSY   75 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--~~-------~~~~~   75 (198)
                      +||+++|.+|+|||||++++++...  ......++...........+  ..+.+||+||.....  ..       ....+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6999999999999999999987643  33344444555566666777  556699999953211  11       11125


Q ss_pred             CCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEE
Q 029144           76 RGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVY  155 (198)
Q Consensus        76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (198)
                      .++|++++|+|++++...+..  .+...+    ...++++++||.|+.+..            ..++..... ..+. ++
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~--~~~~~~----~~~~~i~~~~k~d~~~~~------------~~~~~~~~~-~~~~-~~  138 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEKI------------NEEEIKNKL-GTDR-HM  138 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCCC------------CHHHHHHHH-TCST-TE
T ss_pred             HhCCEEEEEEeCCCCcchhhh--hhhhhc----ccccceeeeeeccccchh------------hhHHHHHHh-CCCC-cE
Confidence            679999999999988776554  222222    367899999999997642            333333222 2233 68


Q ss_pred             EEeccCCCCCHHHHHHHHHHH
Q 029144          156 IECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       156 ~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      +++||++|.|+++++++|.+.
T Consensus       139 ~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         139 VKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             EEEEGGGTCCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            999999999999999998763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=9.1e-23  Score=146.57  Aligned_cols=166  Identities=16%  Similarity=0.201  Sum_probs=105.0

Q ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eE----------------EEEECCeEEEEEEEeCCCccCccccc
Q 029144            9 CVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SA----------------NVVVDGSTVNLGLWDTAGQEDYNRLR   71 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~----------------~~~~~~~~~~l~i~D~~G~~~~~~~~   71 (198)
                      |+|+|++++|||||+++++.........+...... ..                ...+......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999986422111111110000 00                01112223567799999999999888


Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC-------CCccc---cHH
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP-------GAVPI---TTA  141 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~-------~~~~~---~~~  141 (198)
                      ...+..+|++|+|+|+.++-....  ...+..+...  ++|+++|+||+|+...........       ....+   ..+
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT--QEALNILRMY--RTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch--hHHHHHhhcC--CCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888999999999999987655444  3555566665  899999999999976543110000       00000   001


Q ss_pred             HHHHHHHH-----------------cCCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          142 QGEELRKL-----------------IGAPVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       142 ~~~~~~~~-----------------~~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      ...+....                 .+..+++++||.+|.|++++++.|.....
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            11111110                 11236889999999999999999887653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=8.7e-22  Score=140.88  Aligned_cols=167  Identities=16%  Similarity=0.182  Sum_probs=115.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccccCCCcEEEEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLA   84 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (198)
                      +.+||+++|..|||||||++++..+.+    .||.+. ....+.+++  +.+.+||++|++.++..|..+++++++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~-~~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGI-FETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSC-EEEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCe-EEEEEEECc--EEEEEEecCccceeccchhhhcccccceEEE
Confidence            468999999999999999999987654    356552 233345566  6778999999999999999999999999999


Q ss_pred             EECCChh----------hHHHHHHHHHHHHhhhC-CCCCEEEEeecCCccccccccc---------CC------CC----
Q 029144           85 FSLISKA----------SYENVAKKWIPELRHYA-PGVPIILVGTKLDLRDDKQFLA---------DH------PG----  134 (198)
Q Consensus        85 ~d~~~~~----------s~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~~~~---------~~------~~----  134 (198)
                      +|.++..          ...+....|...+.... .++|++|++||+|+.+......         +.      ..    
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~  157 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE  157 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence            9987643          23344356666666544 6899999999999976532110         00      00    


Q ss_pred             -CccccHHHHHH-----HHHHc-------CCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          135 -AVPITTAQGEE-----LRKLI-------GAPVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       135 -~~~~~~~~~~~-----~~~~~-------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                       ........+..     +.+..       .....+++||.++.+++.+|+.+.+.++
T Consensus       158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~  214 (221)
T d1azta2         158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ  214 (221)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHH
Confidence             00111222222     22111       1112457999999999999988776665

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.3e-21  Score=138.72  Aligned_cols=117  Identities=16%  Similarity=0.167  Sum_probs=85.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcc-cccccccCCCcEEEEEEE
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN-RLRPLSYRGADVFLLAFS   86 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~~~~i~v~d   86 (198)
                      +|+++|++|+|||||+++|..+.+...+ ++...........+...+.+.+||++|++.+. ..+..++..++++++|+|
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D   80 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVD   80 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEE
Confidence            6999999999999999999998876553 44444433322234455778899999998875 466777899999999999


Q ss_pred             CCChhhH-HHHHHHHHHHHhh---hCCCCCEEEEeecCCcccc
Q 029144           87 LISKASY-ENVAKKWIPELRH---YAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        87 ~~~~~s~-~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~  125 (198)
                      +++..++ ......+...+..   ...++|++||+||+|+...
T Consensus        81 ~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          81 SAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             cccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            9997764 3432333333332   2247899999999999753

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.86  E-value=3.9e-21  Score=133.61  Aligned_cols=151  Identities=17%  Similarity=0.153  Sum_probs=96.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCC-CCCccccceeEEEEECCeEEEEEEEeCCCccCcc---------------ccc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTD-YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN---------------RLR   71 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------------~~~   71 (198)
                      .|+++|.+|+|||||+|++.+...... +..++...  ..+...+    +.+||+||.....               ...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~--~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecc--ccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999998654322 22233322  2233333    4589999953221               112


Q ss_pred             ccccCCCcEEEEEEECCChhhHHHH---------HHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHH
Q 029144           72 PLSYRGADVFLLAFSLISKASYENV---------AKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQ  142 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~---------~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~  142 (198)
                      ...++.+|++++|+|+..+......         ...+...+...  +.|+++|+||+|+.+...          ..   
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~~----------~~---  140 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNVQ----------EV---  140 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCHH----------HH---
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhHH----------HH---
Confidence            2345678999999998765432221         11334444444  899999999999865432          11   


Q ss_pred             HHHHHHHcCC------CEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          143 GEELRKLIGA------PVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       143 ~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                      ...+......      ..++++||++|.|+++++++|.+.+.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         141 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            1111222111      137899999999999999999988753

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.86  E-value=3.4e-21  Score=135.22  Aligned_cols=155  Identities=15%  Similarity=0.142  Sum_probs=94.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccce-eEEEEECCeEEEEEEEeCCCccCcc-------------ccc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQEDYN-------------RLR   71 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~-------------~~~   71 (198)
                      ..+|+++|.+|+|||||++++.+............... ........   .+.+.|++|.....             ..+
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhh
Confidence            34899999999999999999997543211111111111 11112221   23366766632211             112


Q ss_pred             ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccH--HHHHHHHHH
Q 029144           72 PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITT--AQGEELRKL  149 (198)
Q Consensus        72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~  149 (198)
                      ...+..++++++++|++.+.....  .++++.+...  ++|+++|+||+|+.+...          ...  +...+....
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~~~--~~~~~~l~~~--~~piivv~NK~D~~~~~~----------~~~~~~~~~~~l~~  165 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSNDD--VQMYEFLKYY--GIPVIVIATKADKIPKGK----------WDKHAKVVRQTLNI  165 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCGGG----------HHHHHHHHHHHHTC
T ss_pred             hccccchhhhhhhhhccccccccc--cccccccccc--cCcceechhhccccCHHH----------HHHHHHHHHHHhcc
Confidence            233456799999999987654433  4666677766  899999999999865432          111  112222222


Q ss_pred             cCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          150 IGAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       150 ~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      ....+++.+||++|.|+++++++|.+.+
T Consensus       166 ~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         166 DPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence            2344789999999999999999998876

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.86  E-value=1.6e-21  Score=136.93  Aligned_cols=165  Identities=15%  Similarity=0.081  Sum_probs=107.0

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCC----Cccc-cceeE-EE-------------------EECCeEEEEE
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYV----PTVF-DNFSA-NV-------------------VVDGSTVNLG   57 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~----~t~~-~~~~~-~~-------------------~~~~~~~~l~   57 (198)
                      ....++|+++|+.++|||||++++.+........    ..+. ..+.. ..                   ........+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            4567899999999999999999998632211100    0000 00000 00                   0012246688


Q ss_pred             EEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCcc
Q 029144           58 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVP  137 (198)
Q Consensus        58 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~  137 (198)
                      ++|+||+..|.......+..+|++++|+|+.++...... .+.+..+... ...+++++.||+|+.+...        ..
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t-~e~~~~~~~~-~~~~iiv~inK~D~~d~~~--------~~  151 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT-REHLMALQII-GQKNIIIAQNKIELVDKEK--------AL  151 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHH-HHHHHHHHHH-TCCCEEEEEECGGGSCHHH--------HH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhh-HHHHHHHHHh-cCccceeeeecccchhhHH--------HH
Confidence            999999999988888888999999999999886433333 3333444444 1245788899999976532        00


Q ss_pred             ccHHHHHHHHHHcC--CCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          138 ITTAQGEELRKLIG--APVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       138 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                      ...+...++....+  ..+++++||++|+|++++++.+.+.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         152 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            12233344444332  23689999999999999999998765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.85  E-value=7.6e-21  Score=134.45  Aligned_cols=165  Identities=14%  Similarity=0.059  Sum_probs=104.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCC---CCC--cc-ccceeEEEE------------------------ECCeEE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD---YVP--TV-FDNFSANVV------------------------VDGSTV   54 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~---~~~--t~-~~~~~~~~~------------------------~~~~~~   54 (198)
                      ..++|+++|+.++|||||+++|++......   ...  +. .........                        ......
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r   86 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLR   86 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEE
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccceE
Confidence            348999999999999999999985321100   000  00 000000000                        011234


Q ss_pred             EEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCC
Q 029144           55 NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPG  134 (198)
Q Consensus        55 ~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~  134 (198)
                      .+.+.|+||+..|.......+..+|++|+|+|+.++-..... .+.+..+... .-.|++|++||+|+.+...       
T Consensus        87 ~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t-~e~~~~~~~~-~i~~iIV~vNK~Dl~~~~~-------  157 (205)
T d2qn6a3          87 RISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGII-GVKNLIIVQNKVDVVSKEE-------  157 (205)
T ss_dssp             EEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHH-HHHHHHHHHT-TCCCEEEEEECGGGSCHHH-------
T ss_pred             EEEEeccchHHHHHhhhhcceeccccccccccccccccchhH-HHHHHHHHHc-CCceeeeccccCCCccchH-------
Confidence            678999999999988877888899999999999876322222 2333344433 1358899999999976542       


Q ss_pred             CccccHHHHHHHHHHcC--CCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          135 AVPITTAQGEELRKLIG--APVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       135 ~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                       ..........+.....  ..+++++||++|.|++++++.|.+.+..
T Consensus       158 -~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         158 -ALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT  203 (205)
T ss_dssp             -HHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             -HHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCCC
Confidence             0011122233333221  2368999999999999999999887654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1.6e-21  Score=135.80  Aligned_cols=157  Identities=17%  Similarity=0.175  Sum_probs=96.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC-CCCCCccccceeEEEEE-CCeEEEEEEEeCCCccCccc----cccc---ccCCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFP-TDYVPTVFDNFSANVVV-DGSTVNLGLWDTAGQEDYNR----LRPL---SYRGA   78 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~-~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~----~~~~---~~~~~   78 (198)
                      +|+++|.+|||||||+|++.+.... ..+.+++.........+ ++.  .+.+||+||......    ....   .+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR--SFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSC--EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCc--EEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            6899999999999999999865432 22334333332333333 343  456999999632221    1111   23457


Q ss_pred             cEEEEEEECCChhhHHHH--HHHH---HHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc--C
Q 029144           79 DVFLLAFSLISKASYENV--AKKW---IPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI--G  151 (198)
Q Consensus        79 ~~~i~v~d~~~~~s~~~~--~~~~---~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  151 (198)
                      +.++++++....+.....  ...+   .........++|+++|+||+|+.+..              +....+....  +
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~--------------~~~~~~~~~~~~~  146 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--------------ENLEAFKEKLTDD  146 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--------------HHHHHHHHHCCSC
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH--------------HHHHHHHHHhccC
Confidence            888888876543322111  0111   11111222478999999999997542              1223333332  4


Q ss_pred             CCEEEEeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          152 APVYIECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      . +++.+||++|.|++++++.|.+.+....
T Consensus       147 ~-~v~~iSA~~g~Gi~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         147 Y-PVFPISAVTREGLRELLFEVANQLENTP  175 (185)
T ss_dssp             C-CBCCCSSCCSSTTHHHHHHHHHHHTSCC
T ss_pred             C-cEEEEECCCCCCHHHHHHHHHHhhhhCC
Confidence            4 6889999999999999999999886543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.83  E-value=1.3e-20  Score=131.75  Aligned_cols=163  Identities=17%  Similarity=0.105  Sum_probs=106.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC-----CCCC-C-----CCCcc---ccc-eeEEEEECCeEEEEEEEeCCCccCcccc
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN-----TFPT-D-----YVPTV---FDN-FSANVVVDGSTVNLGLWDTAGQEDYNRL   70 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~-----~~~~-~-----~~~t~---~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~   70 (198)
                      .++|+++|+.++|||||+++++..     .... .     ..+..   +-. ......+......+.++|+||+..|...
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~   82 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN   82 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHH
Confidence            589999999999999999998741     0000 0     00000   000 0111222223356779999999999888


Q ss_pred             cccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc
Q 029144           71 RPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI  150 (198)
Q Consensus        71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (198)
                      ....+..+|++++|+|+.++..-+..  +.+..+... ...|+|++.||+|+.++..       .......+.+.+....
T Consensus        83 ~~~~~~~aD~allVVda~~G~~~QT~--~~~~~a~~~-~~~~iIv~iNK~D~~~~~~-------~~~~i~~~i~~~l~~~  152 (196)
T d1d2ea3          83 MITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQI-GVEHVVVYVNKADAVQDSE-------MVELVELEIRELLTEF  152 (196)
T ss_dssp             HHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHT-TCCCEEEEEECGGGCSCHH-------HHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhcCeEEEEEEcCCCCchhHH--HHHHHHHHh-cCCcEEEEEecccccccHH-------HHHHHHHHHHHHHHHh
Confidence            88888999999999999987655443  333344443 1457899999999975431       0001223445555555


Q ss_pred             CC----CEEEEeccCCC----------CCHHHHHHHHHHHHc
Q 029144          151 GA----PVYIECSSKTQ----------QNVKAVFDAAIKVVL  178 (198)
Q Consensus       151 ~~----~~~~~~Sa~~~----------~~i~~~~~~i~~~~~  178 (198)
                      +.    .+++.+||++|          .++.++++.+.+.+.
T Consensus       153 ~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         153 GYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             TSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             CCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            44    36899999998          588999988876543

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2e-19  Score=124.22  Aligned_cols=157  Identities=17%  Similarity=0.109  Sum_probs=106.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCc---------ccccccccC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------NRLRPLSYR   76 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~~~~~   76 (198)
                      .|+++|.+|+|||||+|+|++....  .....+...........+..  .+..||++|....         .........
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAY--QAIYVDTPGLHMEEKRAINRLMNKAASSSIG   84 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTE--EEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCc--eeEeecCCCceecchhhhhhhhhhccccchh
Confidence            5899999999999999999976532  22223334444454555553  3447888884321         122233445


Q ss_pred             CCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEE
Q 029144           77 GADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYI  156 (198)
Q Consensus        77 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (198)
                      .+++++++.|..+.....   ..+...+...  ..|.++|+||.|......          ............++..+++
T Consensus        85 ~~~~~l~~~d~~~~~~~~---~~~~~~l~~~--~~~~i~v~~k~d~~~~~~----------~~~~~~~~~~~~~~~~~~~  149 (179)
T d1egaa1          85 DVELVIFVVEGTRWTPDD---EMVLNKLREG--KAPVILAVNKVDNVQEKA----------DLLPHLQFLASQMNFLDIV  149 (179)
T ss_dssp             CEEEEEEEEETTCCCHHH---HHHHHHHHSS--SSCEEEEEESTTTCCCHH----------HHHHHHHHHHTTSCCSEEE
T ss_pred             hcceeEEEEecCccchhH---HHHHHHhhhc--cCceeeeeeeeeccchhh----------hhhhHhhhhhhhcCCCCEE
Confidence            678888888877544332   2333334333  688999999999876543          3345556667777877899


Q ss_pred             EeccCCCCCHHHHHHHHHHHHcCCC
Q 029144          157 ECSSKTQQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       157 ~~Sa~~~~~i~~~~~~i~~~~~~~~  181 (198)
                      ++||++|.|++++++.|.+.+.+.+
T Consensus       150 ~vSA~~g~gi~~L~~~i~~~lpe~~  174 (179)
T d1egaa1         150 PISAETGLNVDTIAAIVRKHLPEAT  174 (179)
T ss_dssp             ECCTTTTTTHHHHHHHHHTTCCBCC
T ss_pred             EEeCcCCCCHHHHHHHHHHhCCCCC
Confidence            9999999999999999999875543

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=3.1e-19  Score=125.74  Aligned_cols=145  Identities=19%  Similarity=0.157  Sum_probs=94.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC--CCC-----C-----CCC------CccccceeEEEEECCeEEEEEEEeCCCccC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFP-----T-----DYV------PTVFDNFSANVVVDGSTVNLGLWDTAGQED   66 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~-----~-----~~~------~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~   66 (198)
                      ..++|+++|+.++|||||+++|+..  ...     .     .+.      ..+.+.....+.+++  ..+.|+||||+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchh
Confidence            4589999999999999999999732  000     0     000      111111223344555  4566999999999


Q ss_pred             cccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCcccccccccCCCCCccccHHHHHH
Q 029144           67 YNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQFLADHPGAVPITTAQGEE  145 (198)
Q Consensus        67 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  145 (198)
                      |.......++.+|++|+|+|+.++...+..  +.+..+...  ++| +++++||+|+.+...       ......++.+.
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~--~~~~~~~~~--gi~~iiv~iNK~D~~~~~~-------~~~~~~~~i~~  148 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTR--EHILLARQV--GVPYIVVFMNKVDMVDDPE-------LLDLVEMEVRD  148 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHH--HHHHHHHHT--TCCCEEEEEECGGGCCCHH-------HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEEecccCCCHH-------HHHHHHHHHHH
Confidence            998888889999999999999988766654  444555555  666 677899999965431       00012234444


Q ss_pred             HHHHcCC----CEEEEeccCC
Q 029144          146 LRKLIGA----PVYIECSSKT  162 (198)
Q Consensus       146 ~~~~~~~----~~~~~~Sa~~  162 (198)
                      +...+++    .+++..|+..
T Consensus       149 ~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         149 LLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             HHHHTTSCTTTSCEEECCHHH
T ss_pred             HHHhcCCCcccceeeeeechh
Confidence            4444433    3578888753

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.78  E-value=8.9e-19  Score=124.63  Aligned_cols=152  Identities=15%  Similarity=0.126  Sum_probs=98.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC--CCCCC----------CCCccc-------------------cce---eEEEEE
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPTD----------YVPTVF-------------------DNF---SANVVV   49 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~~~----------~~~t~~-------------------~~~---~~~~~~   49 (198)
                      +..++|+++|+.++|||||+.+|+..  .+...          ...+..                   ..+   ......
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            45789999999999999999999732  21110          000000                   000   111122


Q ss_pred             CCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCC-EEEEeecCCccccccc
Q 029144           50 DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVP-IILVGTKLDLRDDKQF  128 (198)
Q Consensus        50 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~  128 (198)
                      .+  ..+.++|+||+..|.......+..+|++++|+|+..+..-+..  +.+..+...  +++ ++++.||+|+.+... 
T Consensus        87 ~~--~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~--e~~~~~~~~--gv~~iiv~vNK~D~~~~~~-  159 (222)
T d1zunb3          87 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL--GIKHIVVAINKMDLNGFDE-  159 (222)
T ss_dssp             SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEEECTTTTTSCH-
T ss_pred             cc--eEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH--HHHHHHHHc--CCCEEEEEEEccccccccc-
Confidence            33  5677999999999998888888999999999999887655443  334444444  655 788999999976332 


Q ss_pred             ccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHH
Q 029144          129 LADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVK  167 (198)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  167 (198)
                           ........++..+....++    .+++++||++|.|+.
T Consensus       160 -----~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         160 -----RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             -----HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             -----eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence                 0001122344556666544    257899999999873

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=1.3e-16  Score=116.28  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=83.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC--CCCC-----------CCCCcc------ccceeEEEEECCeEEEEEEEeCCCcc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT-----------DYVPTV------FDNFSANVVVDGSTVNLGLWDTAGQE   65 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~-----------~~~~t~------~~~~~~~~~~~~~~~~l~i~D~~G~~   65 (198)
                      +.=+|+++|+.++|||||+.+++..  .+..           .+.+..      .......+.+++  ..++++||||+.
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~~   82 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGHV   82 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSSS
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCchh
Confidence            3337999999999999999998732  2111           001100      111123345566  567799999999


Q ss_pred             CcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           66 DYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        66 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      .|.......++-+|++|+|+|+.++-..... .-| .....+  ++|.++++||+|....
T Consensus        83 dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~-~~w-~~a~~~--~lP~i~fINKmDr~~a  138 (276)
T d2bv3a2          83 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVW-RQAEKY--KVPRIAFANKMDKTGA  138 (276)
T ss_dssp             SCSTTHHHHHHHCCEEEEEEETTTSSCHHHH-HHH-HHHHTT--TCCEEEEEECTTSTTC
T ss_pred             hhHHHHHHHHHhhhheEEeccccCCcchhHH-HHH-HHHHHc--CCCEEEEEeccccccc
Confidence            9999999999999999999999998776665 444 555555  8999999999999764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=8.6e-18  Score=116.47  Aligned_cols=163  Identities=13%  Similarity=0.004  Sum_probs=88.0

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhhCCCCCC--CCCccccceeEEEEECCeEEEEEEEeCCCccCccc----------
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTD--YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR----------   69 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----------   69 (198)
                      +++..++|+++|.+|+|||||+|++.+......  ..+++...........+ ...+..++.++......          
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG-KRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT-EEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccc-cceeeeecccccchhhhhhhhhhhhhh
Confidence            456789999999999999999999987654322  12222222222222223 22222222222111110          


Q ss_pred             ccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHH
Q 029144           70 LRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKL  149 (198)
Q Consensus        70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (198)
                      ...........++.+.+.........  ..+...+...  ..++++++||+|+.+...        .....+..++....
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~v~~k~D~~~~~~--------~~~~~~~~~~~l~~  158 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVDS--NIAVLVLLTKADKLASGA--------RKAQLNMVREAVLA  158 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHHT--TCCEEEEEECGGGSCHHH--------HHHHHHHHHHHHGG
T ss_pred             hhhhhhhheeEEEEeecccccchhHH--HHHHHHhhhc--cccccchhhhhhccCHHH--------HHHHHHHHHHHHHh
Confidence            01111223445666666665544433  3455555555  789999999999976432        00111222232222


Q ss_pred             -cCCCEEEEeccCCCCCHHHHHHHHHHHH
Q 029144          150 -IGAPVYIECSSKTQQNVKAVFDAAIKVV  177 (198)
Q Consensus       150 -~~~~~~~~~Sa~~~~~i~~~~~~i~~~~  177 (198)
                       .+..+++.+||++|.|++++++.|.+.+
T Consensus       159 ~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         159 FNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence             2344789999999999999999987654

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.71  E-value=2.1e-16  Score=114.78  Aligned_cols=110  Identities=24%  Similarity=0.244  Sum_probs=80.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC--CCCC-----------CCCCcc------ccceeEEEEECCeEEEEEEEeCCCccCcc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN--TFPT-----------DYVPTV------FDNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~--~~~~-----------~~~~t~------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (198)
                      +|+++|+.++|||||+.+++..  ....           ++.+-.      ...-...+.+++  ..++++||||+.+|.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF~   81 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDFV   81 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGGH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhhh
Confidence            6999999999999999998632  1111           000000      011123345566  567799999999999


Q ss_pred             cccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcc
Q 029144           69 RLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLR  123 (198)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~  123 (198)
                      ......++-+|++++|+|+.++-.....  .....+...  ++|.++++||+|..
T Consensus        82 ~e~~~al~~~D~avlvvda~~Gv~~~t~--~~~~~~~~~--~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          82 GEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAERL--GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHHT--TCCEEEEEECGGGC
T ss_pred             hhhhhhhcccCceEEEeeccCCccchhH--HHHHhhhhc--cccccccccccccc
Confidence            9888899999999999999988776655  333455555  79999999999975

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=8.7e-18  Score=118.63  Aligned_cols=115  Identities=14%  Similarity=0.129  Sum_probs=77.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccccccc----cCCCcE
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLS----YRGADV   80 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~----~~~~~~   80 (198)
                      ....|+++|.+|+|||||+++|.++.+.+.   ++.......+..++  ..+.+||+||++.+...+...    ...++.
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~---tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT---VVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCCB---CCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCe---EEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            345899999999999999999999875432   22222222222333  556799999998876555443    345678


Q ss_pred             EEEEEECCC-hhhHHHHHHHHH----HHHhhhC-CCCCEEEEeecCCcccc
Q 029144           81 FLLAFSLIS-KASYENVAKKWI----PELRHYA-PGVPIILVGTKLDLRDD  125 (198)
Q Consensus        81 ~i~v~d~~~-~~s~~~~~~~~~----~~~~~~~-~~~p~iiv~nK~Dl~~~  125 (198)
                      +++++|+.+ ..++... ..|+    ..+.... .++|+++|+||+|+...
T Consensus        77 ~i~~vd~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHH-HHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            888888764 4445544 3332    2333333 58999999999999764

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.70  E-value=4.2e-17  Score=117.66  Aligned_cols=159  Identities=17%  Similarity=0.110  Sum_probs=84.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC--CCCC-------------C-----------------CCCccccceeEEEEECC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN--TFPT-------------D-----------------YVPTVFDNFSANVVVDG   51 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~--~~~~-------------~-----------------~~~t~~~~~~~~~~~~~   51 (198)
                      ...++|+++|+.++|||||+.+|+..  .+..             .                 ....+..........++
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            35679999999999999999988531  1110             0                 00000000011122233


Q ss_pred             eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHH------HHHHHHHHHHhhhCCCC-CEEEEeecCCccc
Q 029144           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE------NVAKKWIPELRHYAPGV-PIILVGTKLDLRD  124 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~  124 (198)
                        ..+.+.|+||+..|..........+|++++|+|+..+..-.      .. .+.+..+...  ++ +++++.||+|+..
T Consensus       102 --~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT-~e~l~l~~~~--~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         102 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQT-REHAVLARTQ--GINHLVVVINKMDEPS  176 (245)
T ss_dssp             --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCH-HHHHHHHHHT--TCSSEEEEEECTTSTT
T ss_pred             --ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccch-HHHHHHHHHc--CCCeEEEEEEcCCCCc
Confidence              56779999999999999888999999999999998753211      11 2333333333  45 4789999999974


Q ss_pred             ccccccCCCCCccccHHHHHHHHHHc-CC-----CEEEEeccCCCCCHHHHHH
Q 029144          125 DKQFLADHPGAVPITTAQGEELRKLI-GA-----PVYIECSSKTQQNVKAVFD  171 (198)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i~~~~~  171 (198)
                      ...    .........++...+.... +.     .+++++||++|+||.++++
T Consensus       177 ~~~----~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         177 VQW----SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CSS----CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             cch----hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            321    0000001122233333332 21     2689999999999976543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.6e-17  Score=119.39  Aligned_cols=153  Identities=14%  Similarity=0.092  Sum_probs=97.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh--CCCCC----------------CC--------------CCccccceeEEEEECC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS--NTFPT----------------DY--------------VPTVFDNFSANVVVDG   51 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~--~~~~~----------------~~--------------~~t~~~~~~~~~~~~~   51 (198)
                      ...++|+++|+.++|||||+.+++.  +.+.+                ..              ...+.+.-...+.+++
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            3458999999999999999988863  22110                00              0000111122233444


Q ss_pred             eEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHH------HHHHHHHHHHhhhCCCCC-EEEEeecCCccc
Q 029144           52 STVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYE------NVAKKWIPELRHYAPGVP-IILVGTKLDLRD  124 (198)
Q Consensus        52 ~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~  124 (198)
                        ..+.|.|+|||..|.......+..+|++|+|+|+..+..-.      .. .+.+......  ++| +++++||+|+.+
T Consensus        84 --~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT-~eh~~~~~~~--gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          84 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT-REHALLAFTL--GVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH-HHHHHHHHHT--TCCEEEEEEECGGGGT
T ss_pred             --EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhH-HHHHHHHHHc--CCCeEEEEEECCCCCC
Confidence              67779999999999988888999999999999998753210      12 2323333333  565 788999999976


Q ss_pred             ccccccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHH
Q 029144          125 DKQFLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVK  167 (198)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~  167 (198)
                      ...      .......++...+....+.    .+++.+|+.+|.|+-
T Consensus       159 ~d~------~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         159 WDE------SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             TCH------HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             CCH------HHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence            331      0001122344555555543    358899999998863

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.65  E-value=3.3e-17  Score=116.97  Aligned_cols=157  Identities=11%  Similarity=0.078  Sum_probs=93.7

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC--CCCC------------------------------CCCCccccceeEEEEECCe
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN--TFPT------------------------------DYVPTVFDNFSANVVVDGS   52 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~~~   52 (198)
                      ..++|+++|+.++|||||+.+|+..  .+..                              .....+..........++ 
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~-   80 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-   80 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC-
Confidence            3689999999999999999888631  1110                              000000011111222333 


Q ss_pred             EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHH-----HHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN-----VAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  127 (198)
                       +.+.+.|+|||..|.......++-+|++|+|+|+.++..-..     ...+.+...... ...+++++.||+|+.....
T Consensus        81 -~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~-~~~~iIv~iNK~D~~~~~~  158 (224)
T d1jnya3          81 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTEPPY  158 (224)
T ss_dssp             -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSSTT
T ss_pred             -ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh-CCCceEEEEEcccCCCccc
Confidence             667799999999999999999999999999999988632211     111222222222 2456888999999975321


Q ss_pred             cccCCCCCccccHHHHHHHHHHcCC----CEEEEeccCCCCCHHH
Q 029144          128 FLADHPGAVPITTAQGEELRKLIGA----PVYIECSSKTQQNVKA  168 (198)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~  168 (198)
                      .    .........+...+...++.    .+++++||..|.|+.+
T Consensus       159 ~----~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         159 D----EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             C----HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             c----HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            0    00000122234444444432    2578999999998753

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=1.5e-15  Score=113.82  Aligned_cols=121  Identities=14%  Similarity=0.123  Sum_probs=83.5

Q ss_pred             CCCCcee-EEEEECCCCCCHHHHHHHHhh--CCCCCC---------CCCcc------ccceeEEEEE-------------
Q 029144            1 MSASRFI-KCVTVGDGAVGKTCMLISYTS--NTFPTD---------YVPTV------FDNFSANVVV-------------   49 (198)
Q Consensus         1 m~~~~~~-~i~vvG~~~~GKttli~~~~~--~~~~~~---------~~~t~------~~~~~~~~~~-------------   49 (198)
                      |+....+ +|+++|+.++|||||+.+++.  +.+...         +.+..      .......+.+             
T Consensus        11 m~~~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~   90 (341)
T d1n0ua2          11 MDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQK   90 (341)
T ss_dssp             HHCGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSC
T ss_pred             hcCcccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcc
Confidence            3444556 599999999999999999973  211110         00000      0000111111             


Q ss_pred             -CCeEEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           50 -DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        50 -~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                       ++..+.++++||||+..|.......++-+|++++|+|+..+-..+.. ..| ......  ++|.++++||+|....
T Consensus        91 ~~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~-~~~-~~a~~~--~~p~i~viNKiDr~~~  163 (341)
T d1n0ua2          91 TDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVL-RQALGE--RIKPVVVINKVDRALL  163 (341)
T ss_dssp             CCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHH-HHHHHT--TCEEEEEEECHHHHHH
T ss_pred             ccccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHH-HHH-HHHHHc--CCCeEEEEECcccccc
Confidence             23567899999999999999998999999999999999988777665 333 344444  7999999999998653

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=4.3e-15  Score=114.28  Aligned_cols=165  Identities=13%  Similarity=0.142  Sum_probs=95.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCC------CCCccccceeEEEEECCeEEEEEEEeCCCccCccc-----cccc
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTD------YVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNR-----LRPL   73 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~   73 (198)
                      .+++|+++|.+|+|||||+|++++......      ..+|+....  .+...+ ...+.+|||||......     +...
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~--~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERH--PYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCE--EEECSS-CTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeee--eeeccC-CCeEEEEeCCCcccccccHHHHHHHh
Confidence            479999999999999999999997543221      112222211  122211 12356999999654321     1223


Q ss_pred             ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccH----HHHH----H
Q 029144           74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITT----AQGE----E  145 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~----~  145 (198)
                      .+..+|+++++.|..-  +-.+  ..+...+...  +.|+++|.||+|.........   .......    ++.+    .
T Consensus       132 ~~~~~d~~l~~~~~~~--~~~d--~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~---~~~~~~~e~~l~~ir~~~~~  202 (400)
T d1tq4a_         132 KFYEYDFFIIISATRF--KKND--IDIAKAISMM--KKEFYFVRTKVDSDITNEADG---EPQTFDKEKVLQDIRLNCVN  202 (400)
T ss_dssp             TGGGCSEEEEEESSCC--CHHH--HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTT---CCTTCCHHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCCC--CHHH--HHHHHHHHHc--CCCEEEEEeCcccccchhhhc---ccccccHHHHHHHHHHHHHH
Confidence            3566888888877532  2222  3556667766  899999999999753221000   0011111    1111    1


Q ss_pred             HHHH--cCCCEEEEeccCC--CCCHHHHHHHHHHHHcCCC
Q 029144          146 LRKL--IGAPVYIECSSKT--QQNVKAVFDAAIKVVLQPP  181 (198)
Q Consensus       146 ~~~~--~~~~~~~~~Sa~~--~~~i~~~~~~i~~~~~~~~  181 (198)
                      ....  ...+++|.+|..+  ..++.++.+.+.+.+....
T Consensus       203 ~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~  242 (400)
T d1tq4a_         203 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  242 (400)
T ss_dssp             HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             HHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHH
Confidence            1122  2334578888765  4589999999988876543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.53  E-value=1.6e-13  Score=99.52  Aligned_cols=119  Identities=16%  Similarity=0.109  Sum_probs=76.6

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCccCcccc-------cc--
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRL-------RP--   72 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~~--   72 (198)
                      ...++|+++|.+|+|||||+|.+++....  ....+++..........++  ..+.++||||.......       ..  
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            35799999999999999999999987543  2334555555566666777  45679999995322111       11  


Q ss_pred             cccCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCC---CCCEEEEeecCCccccc
Q 029144           73 LSYRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAP---GVPIILVGTKLDLRDDK  126 (198)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~---~~p~iiv~nK~Dl~~~~  126 (198)
                      ......+++++|++++... +..+  ...+..+...+.   ..++++|.||+|...+.
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~--~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLD--KLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHH--HHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHH--HHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence            1123467889998886532 2211  223333333221   35889999999997654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.43  E-value=9.1e-14  Score=99.78  Aligned_cols=121  Identities=14%  Similarity=0.000  Sum_probs=67.0

Q ss_pred             EEEEEEeCCCccCccccccc---c--cCCCcEEEEEEECCCh---hhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           54 VNLGLWDTAGQEDYNRLRPL---S--YRGADVFLLAFSLISK---ASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~---~--~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      ..+.+.|+||+..+......   .  ....+.+++++|+...   ..+......-.......  ..|.++|+||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~--~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL--GATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH--TSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHh--CCCceeeeeccccccH
Confidence            34669999998765332211   1  1245688999998643   33322211111112222  7899999999999864


Q ss_pred             ccccc-----------------CCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHHHHHHHHHH
Q 029144          126 KQFLA-----------------DHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKV  176 (198)
Q Consensus       126 ~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  176 (198)
                      .....                 ..........+.........+..+++++||++|+|+++++..|.+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            32000                 0000000000111111122344478999999999999999998875

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.25  E-value=1.2e-11  Score=92.02  Aligned_cols=105  Identities=15%  Similarity=0.143  Sum_probs=62.7

Q ss_pred             EEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCC
Q 029144           54 VNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHP  133 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~  133 (198)
                      +.+.|++|.|...-...   ...-+|.+++|.....++..+.. +.-  .+     ..+=++|+||+|+.+...      
T Consensus       144 ~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~-k~g--il-----E~aDi~vvNKaD~~~~~~------  206 (323)
T d2qm8a1         144 FDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGI-KKG--IF-----ELADMIAVNKADDGDGER------  206 (323)
T ss_dssp             CCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------C-CTT--HH-----HHCSEEEEECCSTTCCHH------
T ss_pred             CCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhh-hhh--Hh-----hhhheeeEeccccccchH------
Confidence            45668888875432222   23448999999999887655543 110  11     234489999999876532      


Q ss_pred             CCccccHHHHHHHHHHc---------CCCEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          134 GAVPITTAQGEELRKLI---------GAPVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       134 ~~~~~~~~~~~~~~~~~---------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                          ........+....         ..++++.+||+++.|+++++++|.+....
T Consensus       207 ----~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         207 ----RASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             ----HHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence                2222222222211         22469999999999999999999876543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=1e-11  Score=92.51  Aligned_cols=104  Identities=18%  Similarity=0.199  Sum_probs=57.2

Q ss_pred             EEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCC
Q 029144           56 LGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGA  135 (198)
Q Consensus        56 l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~  135 (198)
                      +.+++|.|...-.   ..+...+|.+++|.+...++..+.. +..+   .    ..+=++|+||+|+.....        
T Consensus       149 ~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~-k~gi---~----e~aDi~VvNKaD~~~~~~--------  209 (327)
T d2p67a1         149 VVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGI-KKGL---M----EVADLIVINKDDGDNHTN--------  209 (327)
T ss_dssp             EEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCC-CHHH---H----HHCSEEEECCCCTTCHHH--------
T ss_pred             eEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhh-chhh---h----ccccEEEEEeecccchHH--------
Confidence            4466666542211   1234568999999987666555433 2211   1    123478899999976432        


Q ss_pred             ccccHHHHHHHHHHc------CCCEEEEeccCCCCCHHHHHHHHHHHHc
Q 029144          136 VPITTAQGEELRKLI------GAPVYIECSSKTQQNVKAVFDAAIKVVL  178 (198)
Q Consensus       136 ~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~~~  178 (198)
                      ......+........      -.++++.+||.+|+|++++++.|.+...
T Consensus       210 ~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         210 VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            001112222222211      1246899999999999999999987553

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.19  E-value=3.4e-10  Score=84.19  Aligned_cols=83  Identities=16%  Similarity=0.099  Sum_probs=45.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccce-eEEEE---------------------ECCeEEEEEEEeCCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNF-SANVV---------------------VDGSTVNLGLWDTAG   63 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~-~~~~~---------------------~~~~~~~l~i~D~~G   63 (198)
                      ++|.++|.|+||||||+|++.+... ..+|..|+.+.. .....                     .......++++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999986532 345555553221 11110                     011336788999999


Q ss_pred             ccCc-------ccccccccCCCcEEEEEEECCC
Q 029144           64 QEDY-------NRLRPLSYRGADVFLLAFSLIS   89 (198)
Q Consensus        64 ~~~~-------~~~~~~~~~~~~~~i~v~d~~~   89 (198)
                      .-..       ....-..++.+|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            4321       1122234578999999999853

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.11  E-value=8.7e-10  Score=80.39  Aligned_cols=82  Identities=20%  Similarity=0.189  Sum_probs=53.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEECCe------------E---EEEEEEeCCCccCcc-
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVVDGS------------T---VNLGLWDTAGQEDYN-   68 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~------------~---~~l~i~D~~G~~~~~-   68 (198)
                      .+||.+||.|+||||||++++..... ..+|..|+.+.....+.+.+.            .   ..+.++|.||.-.-. 
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            37999999999999999999997653 345666664433333433321            1   357799999953322 


Q ss_pred             ---ccccc---ccCCCcEEEEEEEC
Q 029144           69 ---RLRPL---SYRGADVFLLAFSL   87 (198)
Q Consensus        69 ---~~~~~---~~~~~~~~i~v~d~   87 (198)
                         .+...   .++.+|+++.|+|.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~  106 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRC  106 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEEC
T ss_pred             cCCCccHHHHHHHHhccceEEEeec
Confidence               23333   35789999999986

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=2.9e-09  Score=78.27  Aligned_cols=117  Identities=23%  Similarity=0.233  Sum_probs=73.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC-CCCCCCccccceeEEEEE-----------CC-----------------------
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVV-----------DG-----------------------   51 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~-~~~~~~t~~~~~~~~~~~-----------~~-----------------------   51 (198)
                      -+|+|+|..++|||||+|++++..+ +....+++.......+.-           .+                       
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGT  106 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHCSS
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhhCC
Confidence            3799999999999999999998775 333333332111100000           00                       


Q ss_pred             ----------------eEEEEEEEeCCCccCcc-------------cccccccCCCc-EEEEEEECCChhhHHHHHHHHH
Q 029144           52 ----------------STVNLGLWDTAGQEDYN-------------RLRPLSYRGAD-VFLLAFSLISKASYENVAKKWI  101 (198)
Q Consensus        52 ----------------~~~~l~i~D~~G~~~~~-------------~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~  101 (198)
                                      ....+.++|+||...-.             .+...++.+.+ ++++|.++....+.... ..+.
T Consensus       107 ~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~-~~~~  185 (299)
T d2akab1         107 NKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LKIA  185 (299)
T ss_dssp             TTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HHHH
T ss_pred             CcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHH-HHHH
Confidence                            01237799999954321             22233445555 56677777766666555 5666


Q ss_pred             HHHhhhCCCCCEEEEeecCCccccc
Q 029144          102 PELRHYAPGVPIILVGTKLDLRDDK  126 (198)
Q Consensus       102 ~~~~~~~~~~p~iiv~nK~Dl~~~~  126 (198)
                      ..+...  ..++++|+||+|..++.
T Consensus       186 ~~~~~~--~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         186 KEVDPQ--GQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHCTT--CSSEEEEEECGGGSCTT
T ss_pred             HHhCcC--CCceeeEEeccccccch
Confidence            666555  67899999999998753

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.93  E-value=1.3e-09  Score=80.18  Aligned_cols=86  Identities=22%  Similarity=0.225  Sum_probs=61.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCC--CCCCCCCccccceeEEEEECCe---------------EEEEEEEeCCCccC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNT--FPTDYVPTVFDNFSANVVVDGS---------------TVNLGLWDTAGQED   66 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~   66 (198)
                      ...++|.+||.|+||||||++++....  -..+|..|+.+.....+.+.+.               ...+.+.|.||.-.
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            356899999999999999999999754  3567888875554444554431               24678999998543


Q ss_pred             cccc-------cccccCCCcEEEEEEECCC
Q 029144           67 YNRL-------RPLSYRGADVFLLAFSLIS   89 (198)
Q Consensus        67 ~~~~-------~~~~~~~~~~~i~v~d~~~   89 (198)
                      -.+.       .-..++.+|+++.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            2211       1233578999999998854

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.92  E-value=6.1e-10  Score=82.32  Aligned_cols=69  Identities=25%  Similarity=0.227  Sum_probs=41.9

Q ss_pred             EEEEEeCCCccCcc-------------cccccccCCCcEEEEEE-ECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029144           55 NLGLWDTAGQEDYN-------------RLRPLSYRGADVFLLAF-SLISKASYENVAKKWIPELRHYAPGVPIILVGTKL  120 (198)
Q Consensus        55 ~l~i~D~~G~~~~~-------------~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  120 (198)
                      .+.++|+||.....             .+...++.+++.+++++ +......-... ..+...+...  ..++++|+||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~-~~~~~~~~~~--~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDPE--GKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCSS--CSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHH-HHHHHHhCcC--CCeEEEEEecc
Confidence            46799999954321             23344567788655554 55443333333 4555555444  57899999999


Q ss_pred             Cccccc
Q 029144          121 DLRDDK  126 (198)
Q Consensus       121 Dl~~~~  126 (198)
                      |..+..
T Consensus       209 D~~~~~  214 (306)
T d1jwyb_         209 DLMDKG  214 (306)
T ss_dssp             TSSCSS
T ss_pred             ccccch
Confidence            997653

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.60  E-value=9.7e-08  Score=66.59  Aligned_cols=85  Identities=15%  Similarity=0.204  Sum_probs=62.0

Q ss_pred             ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHc--C
Q 029144           74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLI--G  151 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  151 (198)
                      ...|.|.+++|+++.+|+.-.....+|+-.....  ++|.+||+||+||.++..            .+....+...+  +
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~~------------~~~~~~~~~~~~~~   72 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDEDD------------LRKVRELEEIYSGL   72 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHHH------------HHHHHHHHHHHTTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHHH------------HHHHHHhhcccccc
Confidence            4578999999999988765444447787777777  899999999999965421            12223333322  3


Q ss_pred             CCEEEEeccCCCCCHHHHHHHH
Q 029144          152 APVYIECSSKTQQNVKAVFDAA  173 (198)
Q Consensus       152 ~~~~~~~Sa~~~~~i~~~~~~i  173 (198)
                      . +++.+|++++.|++++...+
T Consensus        73 ~-~v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          73 Y-PIVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             S-CEEECCTTTCTTHHHHHHHH
T ss_pred             e-eEEEeccccchhHhhHHHHh
Confidence            3 68899999999999988765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.51  E-value=7.8e-08  Score=69.62  Aligned_cols=56  Identities=25%  Similarity=0.297  Sum_probs=34.7

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhCCCC--CCCCCccccceeEEEEECCeEEEEEEEeCCCc
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSNTFP--TDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ   64 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~   64 (198)
                      .+.++|+|+|.||||||||+|++.+....  ....+++....  .+..+.   .+.++||||.
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~--~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccce--EEECCC---CeEEecCCCc
Confidence            36789999999999999999999986542  22222222211  122222   2569999996

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.43  E-value=2.6e-07  Score=66.79  Aligned_cols=88  Identities=17%  Similarity=0.071  Sum_probs=62.0

Q ss_pred             cccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCC
Q 029144           73 LSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGA  152 (198)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (198)
                      ..+..+|++++|+|+.+|-+....  .+...    ..+.|.++|+||+|+.+..            ..+...+.....+.
T Consensus        11 ~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~----~~~Kp~IlVlNK~DLv~~~------------~~~~w~~~f~~~~~   72 (273)
T d1puja_          11 EKLKLIDIVYELVDARIPMSSRNP--MIEDI----LKNKPRIMLLNKADKADAA------------VTQQWKEHFENQGI   72 (273)
T ss_dssp             HHGGGCSEEEEEEETTSTTTTSCH--HHHHH----CSSSCEEEEEECGGGSCHH------------HHHHHHHHHHTTTC
T ss_pred             HHHHhCCEEEEEEECCCCCCCCCH--HHHHH----HcCCCeEEEEECccCCchH------------HHHHHHHHHHhcCC
Confidence            357789999999999988776543  22222    2378999999999997643            22233333344455


Q ss_pred             CEEEEeccCCCCCHHHHHHHHHHHHcC
Q 029144          153 PVYIECSSKTQQNVKAVFDAAIKVVLQ  179 (198)
Q Consensus       153 ~~~~~~Sa~~~~~i~~~~~~i~~~~~~  179 (198)
                       .++.+|+.++.+...+...+.+.+..
T Consensus        73 -~~i~isa~~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          73 -RSLSINSVNGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             -CEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             -ccceeecccCCCccccchhhhhhhhh
Confidence             57889999999999888877776543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.34  E-value=1.5e-07  Score=65.82  Aligned_cols=86  Identities=21%  Similarity=0.197  Sum_probs=61.9

Q ss_pred             ccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHH---HHHHHc
Q 029144           74 SYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGE---ELRKLI  150 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  150 (198)
                      ...|.|.+++|+++.+|+.-.....+++......  +++.+||+||+||.++.           ...+...   +.....
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~--~i~pvIvlnK~DL~~~~-----------~~~~~~~~~~~~y~~~   73 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQ-----------DTEDTIQAYAEDYRNI   73 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCH-----------HHHHHHHHHHHHHHHH
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc--CCCEEEEEecccccccH-----------HHHHHHHHHHHHHhhc
Confidence            4578999999999988764434447777776666  89999999999997643           1222222   233445


Q ss_pred             CCCEEEEeccCCCCCHHHHHHHH
Q 029144          151 GAPVYIECSSKTQQNVKAVFDAA  173 (198)
Q Consensus       151 ~~~~~~~~Sa~~~~~i~~~~~~i  173 (198)
                      |. +++.+|+.++.|++++...+
T Consensus        74 g~-~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          74 GY-DVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             TC-CEEECCHHHHTTCTTTGGGG
T ss_pred             cc-cceeeecCChhHHHHHHHhh
Confidence            77 68999999999988876544

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.29  E-value=4e-07  Score=63.41  Aligned_cols=58  Identities=16%  Similarity=0.040  Sum_probs=34.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCCC-------CCccccceeEEEEECCeEEEEEEEeCCCccCcc
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNTFPTDY-------VPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYN   68 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~   68 (198)
                      ..+++|++|||||||+|++.........       .+.+.......+.+++..   .++||||-..+.
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             eEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            5689999999999999999865322110       011111222333444322   389999976554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.06  E-value=6.4e-06  Score=56.77  Aligned_cols=92  Identities=14%  Similarity=0.004  Sum_probs=51.9

Q ss_pred             EEEEEEeCCCccCcccc------cccc--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccc
Q 029144           54 VNLGLWDTAGQEDYNRL------RPLS--YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD  125 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~------~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  125 (198)
                      +.+.++||+|-..+...      ...+  .-+.+-+++|+|++....-...   ........  + +--++.||.|....
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~---~~~~~~~~--~-~~~lI~TKlDet~~  168 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDL---ASKFNQAS--K-IGTIIITKMDGTAK  168 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHHC--T-TEEEEEECTTSCSC
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHH---Hhhhhccc--C-cceEEEecccCCCc
Confidence            45779999996444321      1111  1235688999998765432222   22222221  2 22466899999653


Q ss_pred             cccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHH
Q 029144          126 KQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKA  168 (198)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (198)
                                    .-.+.......+.+ +..++  +|+++++
T Consensus       169 --------------~G~~l~~~~~~~lP-i~~it--~Gq~v~D  194 (211)
T d1j8yf2         169 --------------GGGALSAVAATGAT-IKFIG--TGEKIDE  194 (211)
T ss_dssp             --------------HHHHHHHHHTTTCC-EEEEE--CSSSTTC
T ss_pred             --------------ccHHHHHHHHHCcC-EEEEe--CCCCccc
Confidence                          34667778888884 44444  4666644

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=4.9e-06  Score=57.48  Aligned_cols=24  Identities=21%  Similarity=0.115  Sum_probs=19.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHH
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISY   26 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~   26 (198)
                      ..++.-|+++|++|+||||.+-++
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKL   31 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKL   31 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHH
Confidence            456788999999999999987444

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.02  E-value=6e-07  Score=62.72  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ..+++|++|||||||+|++..+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4679999999999999999865

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.02  E-value=1.2e-05  Score=55.29  Aligned_cols=84  Identities=17%  Similarity=0.101  Sum_probs=47.4

Q ss_pred             EEEEEEeCCCccCcccc----cccc--------cCCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029144           54 VNLGLWDTAGQEDYNRL----RPLS--------YRGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKL  120 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~----~~~~--------~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  120 (198)
                      +.+.++||+|...+...    ...+        ....+-.++|+|++... ....+ ......+.     . --++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~-~~~~~~~~-----~-~~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQA-KKFHEAVG-----L-TGVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHH-HHHHHHHC-----C-SEEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHH-HHhhhccC-----C-ceEEEecc
Confidence            45779999996544321    1111        12457889999987654 33333 33333322     2 24568999


Q ss_pred             CcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEec
Q 029144          121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECS  159 (198)
Q Consensus       121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  159 (198)
                      |......              .+.......+.+ +..++
T Consensus       162 Det~~~G--------------~~l~~~~~~~~P-i~~i~  185 (207)
T d1okkd2         162 DGTAKGG--------------VLIPIVRTLKVP-IKFVG  185 (207)
T ss_dssp             TSSCCCT--------------THHHHHHHHCCC-EEEEE
T ss_pred             CCCCCcc--------------HHHHHHHHHCCC-EEEEe
Confidence            9865432              455667777774 43344

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.02  E-value=1.9e-06  Score=58.74  Aligned_cols=28  Identities=18%  Similarity=0.146  Sum_probs=25.8

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      |.++++.-|+++|+|||||||+..++..
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            8889999999999999999999988865

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=1.6e-05  Score=54.71  Aligned_cols=91  Identities=13%  Similarity=0.057  Sum_probs=50.0

Q ss_pred             EEEEEEeCCCccCccc-----c--ccccc-----CCCcEEEEEEECCChh-hHHHHHHHHHHHHhhhCCCCCEEEEeecC
Q 029144           54 VNLGLWDTAGQEDYNR-----L--RPLSY-----RGADVFLLAFSLISKA-SYENVAKKWIPELRHYAPGVPIILVGTKL  120 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~-----~--~~~~~-----~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iiv~nK~  120 (198)
                      +.+.++||+|-...+.     +  .....     ...+-.++|+|++... ....+ ......+      -+--++.||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~-~~~~~~~------~~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQA-KLFHEAV------GLTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHH-HHHHHHS------CCCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHH-hhhhhcc------CCceEEEeec
Confidence            4567999999433221     0  01111     2356889999987543 23322 2222222      2335668999


Q ss_pred             CcccccccccCCCCCccccHHHHHHHHHHcCCCEEEEeccCCCCCHHH
Q 029144          121 DLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKA  168 (198)
Q Consensus       121 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  168 (198)
                      |....-              -.+...+...+. |+..++  +|+++++
T Consensus       165 De~~~~--------------G~~l~~~~~~~~-Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTAKG--------------GVIFSVADQFGI-PIRYIG--VGERIED  195 (211)
T ss_dssp             TTCTTT--------------THHHHHHHHHCC-CEEEEE--CSSSGGG
T ss_pred             CCCCCc--------------cHHHHHHHHHCC-CEEEEe--CCCCccc
Confidence            996533              255667777787 444444  5666543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=2.5e-05  Score=54.33  Aligned_cols=21  Identities=24%  Similarity=0.226  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      +++-|.-|+|||||+++++..
T Consensus         6 ~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEeeCCCCCHHHHHHHHHhc
Confidence            678899999999999999875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.92  E-value=3e-06  Score=56.68  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999888753

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.86  E-value=4.9e-06  Score=55.33  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=23.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +++.++|++.|++||||||+.+.|..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            57889999999999999999988864

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.82  E-value=4.5e-05  Score=52.34  Aligned_cols=84  Identities=25%  Similarity=0.204  Sum_probs=47.8

Q ss_pred             EEEEEEeCCCccCccccc----ccc--cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccc
Q 029144           54 VNLGLWDTAGQEDYNRLR----PLS--YRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQ  127 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~  127 (198)
                      +.+.++||+|........    ..+  ..+.+-+++|.|++.+..-......+...+.      +-=++.+|.|....  
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~~------~~~~I~TKlDe~~~--  164 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKVG------VTGLVLTKLDGDAR--  164 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHTC------CCEEEEECGGGCSS--
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhCC------CCeeEEeecCcccc--
Confidence            456799999965443211    111  2356889999998766443333232222221      12366899998543  


Q ss_pred             cccCCCCCccccHHHHHHHHHHcCCCEEEEe
Q 029144          128 FLADHPGAVPITTAQGEELRKLIGAPVYIEC  158 (198)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (198)
                                  .-.+.......+.| +..+
T Consensus       165 ------------~G~~l~~~~~~~~P-i~~i  182 (207)
T d1ls1a2         165 ------------GGAALSARHVTGKP-IYFA  182 (207)
T ss_dssp             ------------CHHHHHHHHHHCCC-EEEE
T ss_pred             ------------chHHHHHHHHHCCC-EEEE
Confidence                        23556677777774 4334

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.72  E-value=7.7e-06  Score=54.77  Aligned_cols=23  Identities=13%  Similarity=0.263  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -+|+|.|++|+|||||+++|...
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            38999999999999999998753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.70  E-value=1.3e-05  Score=54.29  Aligned_cols=27  Identities=19%  Similarity=0.359  Sum_probs=23.6

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +.+.++|+++|+|||||||+...+...
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999888753

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.65  E-value=1.1e-05  Score=54.57  Aligned_cols=24  Identities=21%  Similarity=0.138  Sum_probs=21.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .+++|+++|++||||||+...+..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999987764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.64  E-value=1.2e-05  Score=53.21  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..+|+++|++||||||+.+.+..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999988854

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.62  E-value=1.9e-05  Score=53.42  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=21.8

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++.++|+++|+|||||||+...+..
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999987764

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.62  E-value=1.7e-05  Score=53.06  Aligned_cols=22  Identities=18%  Similarity=0.167  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++|+|+|+|||||||+.+.+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999987754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.8e-05  Score=52.20  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -|+|+|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            388999999999999999975

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.55  E-value=2.5e-05  Score=52.31  Aligned_cols=23  Identities=13%  Similarity=0.338  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ++|+++|+|||||||+.+.+...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999887643

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.52  E-value=2.8e-05  Score=52.19  Aligned_cols=23  Identities=17%  Similarity=0.144  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ++|+++|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999877653

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.52  E-value=2.8e-05  Score=50.36  Aligned_cols=21  Identities=19%  Similarity=0.325  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |++.|++||||||+++++...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            788999999999999988653

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=3.9e-05  Score=51.12  Aligned_cols=26  Identities=19%  Similarity=0.144  Sum_probs=22.4

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .+.+.=|+++|.+||||||++.++..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45677899999999999999998864

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3.3e-05  Score=51.63  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++|+++|+|||||||+.+.+..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999987753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=4.3e-05  Score=51.17  Aligned_cols=23  Identities=22%  Similarity=0.257  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .++|+++|++||||||+...+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999988864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.38  E-value=4.9e-05  Score=50.04  Aligned_cols=21  Identities=19%  Similarity=0.336  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |++.|++||||||+.+++...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            889999999999999888753

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=6.2e-05  Score=50.86  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++.|+|+|+|||||||+...+..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999987764

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=4.9e-05  Score=49.53  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .|+++|++||||||+.+.+...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999999888653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.31  E-value=7e-05  Score=49.33  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=18.1

Q ss_pred             EE-EEECCCCCCHHHHHHHHhh
Q 029144            8 KC-VTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i-~vvG~~~~GKttli~~~~~   28 (198)
                      || .|+|.+|||||||++++..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            44 5999999999999988874

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=6.6e-05  Score=49.90  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      +|++.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999987764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.29  E-value=0.00011  Score=49.76  Aligned_cols=27  Identities=15%  Similarity=0.135  Sum_probs=22.4

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++++.--|+++|++||||||+...+..
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            445556799999999999999988865

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.28  E-value=6.1e-05  Score=49.63  Aligned_cols=21  Identities=29%  Similarity=0.267  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      +|+++|.+||||||+.+.+..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999977753

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.25  E-value=9.9e-05  Score=50.32  Aligned_cols=23  Identities=35%  Similarity=0.183  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +.=|+++|.|||||||+.+++..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34589999999999999988874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.0013  Score=45.91  Aligned_cols=23  Identities=13%  Similarity=0.180  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999877653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.21  E-value=8.7e-05  Score=48.74  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      +|+++|++|+||||+.+.+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999987743

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00011  Score=49.47  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |+|+|++|||||||++++...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            799999999999999998754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.17  E-value=0.00014  Score=48.09  Aligned_cols=20  Identities=20%  Similarity=0.172  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q 029144            9 CVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~   28 (198)
                      |+++|++||||||+.+.+..
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999987753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.17  E-value=0.00015  Score=47.95  Aligned_cols=24  Identities=13%  Similarity=0.050  Sum_probs=20.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +.+-|.++|.+||||||+.+.|..
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457799999999999999977753

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.12  E-value=0.00016  Score=51.15  Aligned_cols=25  Identities=16%  Similarity=0.100  Sum_probs=21.4

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+.-|++.|+||+|||||++.+...
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4556999999999999999988764

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.12  E-value=0.00014  Score=48.65  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |+++|++|||||||++.+...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            689999999999999988754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00036  Score=49.92  Aligned_cols=62  Identities=18%  Similarity=0.084  Sum_probs=38.0

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCCCCC----CCccccceeEEEE-ECCeEEEEEEEeCCCccC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDY----VPTVFDNFSANVV-VDGSTVNLGLWDTAGQED   66 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~~l~i~D~~G~~~   66 (198)
                      +..=|.++|+.++|||+|+|.+++....-..    .+++..-...... .++....+.++||.|...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            3457889999999999999999976532211    1222111111111 233445677999999654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00015  Score=47.69  Aligned_cols=21  Identities=19%  Similarity=0.234  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      =++++|++||||||+.+.+..
T Consensus         8 iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366799999999999988865

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.10  E-value=0.00014  Score=48.39  Aligned_cols=19  Identities=26%  Similarity=0.139  Sum_probs=17.0

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029144            9 CVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~   27 (198)
                      |+|.|.+||||||+++.+.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7888999999999998775

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00016  Score=48.32  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |+++|++|+||+||+++++..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999998853

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.07  E-value=0.00016  Score=47.67  Aligned_cols=21  Identities=14%  Similarity=0.191  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |++.|++||||||+.+.+...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999888653

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00018  Score=48.54  Aligned_cols=20  Identities=25%  Similarity=0.361  Sum_probs=18.3

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q 029144            9 CVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~   28 (198)
                      |+|+|++|||||||++++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999988864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00019  Score=50.34  Aligned_cols=23  Identities=17%  Similarity=0.076  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      +|+++|+.|+|||||++.+.+-.
T Consensus        31 ~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            68999999999999998777643

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.01  E-value=0.00021  Score=46.98  Aligned_cols=21  Identities=19%  Similarity=0.289  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |++.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566699999999999888764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.99  E-value=0.00021  Score=47.67  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=17.1

Q ss_pred             eEEE-EECCCCCCHHHHHHHHh
Q 029144            7 IKCV-TVGDGAVGKTCMLISYT   27 (198)
Q Consensus         7 ~~i~-vvG~~~~GKttli~~~~   27 (198)
                      +||+ +.|.+||||||+++.+.
T Consensus         1 mkiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3555 56999999999998775

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00023  Score=48.66  Aligned_cols=21  Identities=10%  Similarity=0.286  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |+++|++|||||||+++++..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999754

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.93  E-value=0.00023  Score=47.99  Aligned_cols=23  Identities=17%  Similarity=0.092  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      --|+++|+|||||||+..++...
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            34889999999999999888653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.89  E-value=0.00026  Score=49.94  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|++|+|||||++.+.+-
T Consensus        43 ~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          43 TVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTT
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6999999999999999877653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.89  E-value=0.0003  Score=49.29  Aligned_cols=22  Identities=14%  Similarity=0.098  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++-+.+-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            6899999999999999877654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.88  E-value=0.00032  Score=47.27  Aligned_cols=27  Identities=19%  Similarity=0.271  Sum_probs=23.5

Q ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            2 SASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         2 ~~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ...+++-|+|-|..||||||+++.+..
T Consensus         5 ~~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           5 EGTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999999988765

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00015  Score=48.67  Aligned_cols=23  Identities=17%  Similarity=0.125  Sum_probs=19.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..-|.++|.+||||||+.+.|..
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45788999999999999988754

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.88  E-value=0.00041  Score=46.47  Aligned_cols=25  Identities=16%  Similarity=0.050  Sum_probs=21.2

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..++=|.|-|++|||||||.++|..
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3466789999999999999988864

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.88  E-value=0.00027  Score=49.23  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.+++.|+||+||||+++.+...
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            447999999999999999988754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00031  Score=49.53  Aligned_cols=22  Identities=18%  Similarity=0.184  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++-+.+-
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6899999999999999877654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.86  E-value=0.0004  Score=47.19  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++++|+.|+|||||++-+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999887643

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00033  Score=47.26  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=19.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +.-+++++|++|+|||+++..+..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHH
Confidence            445899999999999999966654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00033  Score=48.64  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++|+.|+|||||++-+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999877654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.85  E-value=0.0003  Score=48.97  Aligned_cols=23  Identities=22%  Similarity=0.240  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++.|+||+||||+++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            36999999999999999888754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.83  E-value=0.00085  Score=43.58  Aligned_cols=24  Identities=25%  Similarity=0.191  Sum_probs=20.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ..-|++-|+-|+|||||++.+...
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHhh
Confidence            345888999999999999988865

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.00037  Score=49.49  Aligned_cols=24  Identities=29%  Similarity=0.319  Sum_probs=19.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..=++++||++|+|||+++..+..
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHH
Confidence            345899999999999999966654

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.80  E-value=0.00038  Score=48.51  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35689999999999998777653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.79  E-value=0.00036  Score=48.43  Aligned_cols=22  Identities=23%  Similarity=0.188  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -+.++|++|+|||||++-+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4789999999999999855553

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00036  Score=49.99  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .++++|+.|+|||||++.+.+-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            5899999999999999888764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.77  E-value=0.00043  Score=47.49  Aligned_cols=24  Identities=17%  Similarity=0.214  Sum_probs=20.6

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +.+.|++-|++||||||+...+..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457889999999999999987764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.74  E-value=0.00045  Score=48.16  Aligned_cols=23  Identities=26%  Similarity=0.212  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -+.++|+.|+|||||++-+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999998777643

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00064  Score=46.40  Aligned_cols=23  Identities=17%  Similarity=0.104  Sum_probs=20.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++-|.|-|++|||||||.+.+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            67899999999999999987754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.63  E-value=0.00078  Score=46.97  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999998776643

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.63  E-value=0.00033  Score=49.41  Aligned_cols=21  Identities=19%  Similarity=0.213  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      +++++|+.|+|||||++-+.+
T Consensus        46 ~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             EEEEECSTTSSHHHHHTTTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHh
Confidence            789999999999999975554

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.62  E-value=0.00091  Score=46.89  Aligned_cols=24  Identities=17%  Similarity=0.293  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.|++.|++|+|||++++.+...
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhc
Confidence            456999999999999999988753

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.62  E-value=0.00037  Score=48.30  Aligned_cols=23  Identities=26%  Similarity=0.228  Sum_probs=19.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            37899999999999998887753

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.61  E-value=0.00069  Score=46.83  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++.|++|+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999877653

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.61  E-value=0.00067  Score=47.69  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=20.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999888754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00052  Score=47.90  Aligned_cols=22  Identities=14%  Similarity=0.197  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -+.++|++|+|||||++-+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999877654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00043  Score=48.13  Aligned_cols=21  Identities=24%  Similarity=0.332  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -+.++|+.|+|||||++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            478999999999999988876

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.59  E-value=0.0006  Score=47.65  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999998887653

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.58  E-value=0.00057  Score=46.71  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=21.8

Q ss_pred             CCceeEEEEECCCCCCHHHHHHHHhh
Q 029144            3 ASRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         3 ~~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..+.+-|.+.|.+|+|||||.+.|..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999988764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.57  E-value=0.00058  Score=49.91  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .+|+|.|+.|+||||+++.++...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            469999999999999999998754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.00073  Score=47.26  Aligned_cols=23  Identities=17%  Similarity=0.161  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -.+++.|++|+||||+++.+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999988864

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.53  E-value=0.00072  Score=49.10  Aligned_cols=24  Identities=21%  Similarity=0.176  Sum_probs=20.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +-.++++||+|+|||.|.+++...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            346899999999999999888753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.52  E-value=0.00064  Score=47.88  Aligned_cols=21  Identities=14%  Similarity=0.178  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .|+|.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999988864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.49  E-value=0.001  Score=46.34  Aligned_cols=23  Identities=22%  Similarity=0.179  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -+.++|+.|+|||||++-+.+-.
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36799999999999998777654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.45  E-value=0.00084  Score=47.38  Aligned_cols=22  Identities=18%  Similarity=0.211  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -+.++|+.|+|||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999988654

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.38  E-value=0.0013  Score=46.51  Aligned_cols=21  Identities=19%  Similarity=0.230  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      +++.|++|+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999887753

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.36  E-value=0.0017  Score=43.41  Aligned_cols=26  Identities=19%  Similarity=0.042  Sum_probs=21.9

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .++=|.|.|.+||||||+++.|....
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~~g   27 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRSWG   27 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence            46789999999999999998776543

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.0011  Score=45.23  Aligned_cols=22  Identities=14%  Similarity=0.145  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      =|++.|++||||+|+...+...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4677799999999999877643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.34  E-value=0.0014  Score=46.19  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHCCC
Confidence            36899999999999999887753

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.0013  Score=46.16  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -.|++.|++|+|||++++.+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            36999999999999999999864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.33  E-value=0.00051  Score=47.96  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .+.++|+.|+|||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            57899999999999998777643

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0014  Score=45.04  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      -++++.|++|+||||+++.+..
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            4689999999999999987764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.16  E-value=0.0014  Score=44.98  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ++++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            6899999999999999888764

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0016  Score=45.86  Aligned_cols=24  Identities=17%  Similarity=0.112  Sum_probs=20.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +-.|++.|++|+|||++++.+...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            346999999999999999988774

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.0018  Score=45.57  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -.+++.|++|+|||++++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHHH
Confidence            35999999999999999988753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0017  Score=44.71  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHHH
Confidence            35899999999999999877653

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.07  E-value=0.0015  Score=49.74  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      +-+|+++||+|||||-|.+++-.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999988854

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.00  E-value=0.0024  Score=43.11  Aligned_cols=21  Identities=14%  Similarity=0.189  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999976653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.92  E-value=0.0014  Score=49.07  Aligned_cols=29  Identities=24%  Similarity=0.344  Sum_probs=21.3

Q ss_pred             ceeEEEEECCCCCCHHHHHH----HHhhCCCCC
Q 029144            5 RFIKCVTVGDGAVGKTCMLI----SYTSNTFPT   33 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~----~~~~~~~~~   33 (198)
                      +.=++++||++|||||+++.    ++..+..+.
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~   74 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE   74 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCH
Confidence            34468999999999999995    444555443

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.86  E-value=0.0012  Score=48.37  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      +|+++|++|+|||+|++++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            699999999999999998853

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.0029  Score=45.67  Aligned_cols=25  Identities=20%  Similarity=0.062  Sum_probs=21.4

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhh
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..++=|.|.|++||||||+.+.+..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            4578999999999999999977653

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.84  E-value=0.0036  Score=41.29  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .-|++.|++|+||||+.-.+....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            358999999999999999888765

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.0024  Score=45.18  Aligned_cols=24  Identities=17%  Similarity=0.178  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -.|++.|++|+|||+|++.+....
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            469999999999999999987643

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.68  E-value=0.0037  Score=44.45  Aligned_cols=24  Identities=17%  Similarity=0.099  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhhC
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ..-|.|.|.+|+|||||+..+++.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            345789999999999999888754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0039  Score=41.98  Aligned_cols=23  Identities=17%  Similarity=0.122  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      =+++.|++|+|||+|+..+..+.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            36899999999999998887654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.58  E-value=0.0044  Score=40.90  Aligned_cols=24  Identities=13%  Similarity=0.333  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      .-|++.|++|+||||+...+....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            358999999999999999888754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.55  E-value=0.0072  Score=40.79  Aligned_cols=23  Identities=22%  Similarity=0.112  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +=|.|.|..||||||+++.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            56889999999999999877543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0038  Score=42.29  Aligned_cols=20  Identities=25%  Similarity=0.109  Sum_probs=17.3

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q 029144            9 CVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~   28 (198)
                      |++-|..||||||+++.+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78889999999999977653

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.43  E-value=0.007  Score=43.14  Aligned_cols=24  Identities=17%  Similarity=0.047  Sum_probs=20.1

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHh
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~   27 (198)
                      .+++=|.|-|.+|||||||...+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            457889999999999999986553

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.39  E-value=0.0043  Score=42.66  Aligned_cols=23  Identities=13%  Similarity=0.102  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -++|.|++|+|||+|+..+....
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            37899999999999998887654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.38  E-value=0.0048  Score=45.62  Aligned_cols=23  Identities=17%  Similarity=0.028  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .-.+++.|+||+|||++...+..
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999988764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.36  E-value=0.006  Score=39.93  Aligned_cols=25  Identities=16%  Similarity=0.356  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF   31 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~   31 (198)
                      .-|++.|++|+||||+.-.+.....
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4689999999999999988887643

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.34  E-value=0.0045  Score=42.83  Aligned_cols=23  Identities=17%  Similarity=0.110  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      =++|.|++|+|||+|...+....
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            37899999999999998887654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.0055  Score=41.62  Aligned_cols=19  Identities=21%  Similarity=0.139  Sum_probs=16.1

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029144            9 CVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~   27 (198)
                      |++-|..||||||+++.+.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7777999999999886654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.22  E-value=0.0035  Score=44.74  Aligned_cols=20  Identities=10%  Similarity=0.260  Sum_probs=14.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 029144            8 KCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~   27 (198)
                      =|.|.|.+||||||+.++|.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            49999999999999998764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0078  Score=40.71  Aligned_cols=25  Identities=12%  Similarity=0.139  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhCCC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSNTF   31 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~~~   31 (198)
                      +=|.|.|..||||||+.+.|....+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~G~   28 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADLGI   28 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEECCCcCCHHHHHHHHHHCCC
Confidence            4578999999999999987765443

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.001  Score=44.50  Aligned_cols=18  Identities=17%  Similarity=0.442  Sum_probs=15.9

Q ss_pred             EEECCCCCCHHHHHHHHh
Q 029144           10 VTVGDGAVGKTCMLISYT   27 (198)
Q Consensus        10 ~vvG~~~~GKttli~~~~   27 (198)
                      +|+|+.|+|||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            578999999999998775

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0038  Score=42.98  Aligned_cols=22  Identities=23%  Similarity=0.202  Sum_probs=18.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhh
Q 029144            7 IKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~   28 (198)
                      -.|+|-|..||||||+++.|..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999986654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.0077  Score=43.59  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .++++|++|+|||.|.+.+..
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHh
Confidence            689999999999999987653

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=94.98  E-value=0.0077  Score=44.51  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhh
Q 029144            6 FIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         6 ~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .-+++++|+.|||||-|.+++..
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHh
Confidence            45799999999999999988754

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.90  E-value=0.005  Score=44.09  Aligned_cols=18  Identities=22%  Similarity=0.375  Sum_probs=16.1

Q ss_pred             EEECCCCCCHHHHHHHHh
Q 029144           10 VTVGDGAVGKTCMLISYT   27 (198)
Q Consensus        10 ~vvG~~~~GKttli~~~~   27 (198)
                      +++|+.|+||||++.++.
T Consensus        28 vlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEECCTTTCSTHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHH
Confidence            789999999999998773

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.88  E-value=0.0076  Score=41.47  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -++|.|++|+|||+|+.++..+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999888755

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.74  E-value=0.0096  Score=43.12  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      +++.|+||+|||.|.+.+-..
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            344699999999999888653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.0097  Score=41.03  Aligned_cols=23  Identities=17%  Similarity=0.135  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      -++|.|++|+|||+|...+..+.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999888643

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.62  E-value=0.012  Score=42.77  Aligned_cols=26  Identities=15%  Similarity=0.095  Sum_probs=22.5

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .+.++|.|=|.-|+||||+++.+...
T Consensus         4 ~~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           4 VTIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             CceEEEEEECCccCCHHHHHHHHHHH
Confidence            35789999999999999999888653

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.59  E-value=0.0097  Score=40.82  Aligned_cols=23  Identities=22%  Similarity=0.062  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSNT   30 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~~   30 (198)
                      =++|.|++|+|||+|+..+..+.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            37899999999999998887543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.013  Score=39.62  Aligned_cols=21  Identities=5%  Similarity=0.156  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999987654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.011  Score=40.65  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -|+|=|..||||||+++.+..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            588999999999999988864

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.013  Score=40.44  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      .+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999987653

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.41  E-value=0.013  Score=42.56  Aligned_cols=24  Identities=17%  Similarity=0.228  Sum_probs=21.3

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..++|.|=|.-|+||||+++.+..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            567899999999999999988764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.35  E-value=0.01  Score=39.79  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      +.=.+++.|++++|||.|+.++..-
T Consensus        52 Kkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          52 KKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             TCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEEEECCCCccHHHHHHHHHHH
Confidence            4457899999999999999877653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.25  E-value=0.012  Score=43.77  Aligned_cols=19  Identities=21%  Similarity=0.379  Sum_probs=16.5

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029144            9 CVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~   27 (198)
                      -+++|+.|+|||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3688999999999998874

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.18  E-value=0.012  Score=42.81  Aligned_cols=25  Identities=16%  Similarity=0.219  Sum_probs=22.2

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ..++|.|=|.-|+||||+++.+...
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999988764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.14  E-value=0.0099  Score=42.28  Aligned_cols=15  Identities=27%  Similarity=0.671  Sum_probs=13.4

Q ss_pred             EEEECCCCCCHHHHH
Q 029144            9 CVTVGDGAVGKTCML   23 (198)
Q Consensus         9 i~vvG~~~~GKttli   23 (198)
                      ++|+|.+|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            689999999999765

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.07  E-value=0.015  Score=39.54  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=17.0

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q 029144            8 KCVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~   27 (198)
                      -++|.|++|+|||+|+..+.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46889999999999996654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.06  E-value=0.016  Score=43.36  Aligned_cols=21  Identities=19%  Similarity=0.246  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |++.|+.|+||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            899999999999999888864

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.95  E-value=0.019  Score=38.99  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      +.+.|++|+|||-|++++.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999888764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.014  Score=43.82  Aligned_cols=23  Identities=17%  Similarity=0.249  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      -+++|+|.+|+|||+++..++..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            47999999999999998766643

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.94  E-value=0.016  Score=39.37  Aligned_cols=20  Identities=20%  Similarity=0.056  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q 029144            9 CVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~   28 (198)
                      |++=|..||||||+++.+..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            88999999999999977753

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.77  E-value=0.014  Score=41.92  Aligned_cols=16  Identities=25%  Similarity=0.356  Sum_probs=13.9

Q ss_pred             EEEEECCCCCCHHHHH
Q 029144            8 KCVTVGDGAVGKTCML   23 (198)
Q Consensus         8 ~i~vvG~~~~GKttli   23 (198)
                      .++|.|.+|+||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            3789999999999766

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.65  E-value=0.022  Score=40.01  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q 029144            9 CVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~   28 (198)
                      +++.|.+|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999976654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.031  Score=39.70  Aligned_cols=22  Identities=23%  Similarity=0.326  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      |++++|++|+|||+|+..+..+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            7999999999999999777653

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.07  E-value=0.032  Score=40.17  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=18.9

Q ss_pred             cee-EEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFI-KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~-~i~vvG~~~~GKttli~~~~~   28 (198)
                      ++. .++++|++|+|||.+.+.+..
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHHHH
Confidence            444 578889999999999976653

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.028  Score=39.30  Aligned_cols=19  Identities=21%  Similarity=0.399  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029144            9 CVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~   27 (198)
                      .++.|.+|+|||+|+..+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999997665

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=92.60  E-value=0.12  Score=33.71  Aligned_cols=102  Identities=14%  Similarity=0.132  Sum_probs=58.4

Q ss_pred             CceeEEEEECC-CCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCc---------------
Q 029144            4 SRFIKCVTVGD-GAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY---------------   67 (198)
Q Consensus         4 ~~~~~i~vvG~-~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------------   67 (198)
                      .+++||+|+|. .++| ++|+.++..+.....                +..+.+.+.|.+.....               
T Consensus        22 k~~~kV~I~GA~G~Ig-~~l~~~La~g~v~g~----------------~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~   84 (175)
T d7mdha1          22 KKLVNIAVSGAAGMIS-NHLLFKLASGEVFGQ----------------DQPIALKLLGSERSFQALEGVAMELEDSLYPL   84 (175)
T ss_dssp             CCCEEEEEETTTSHHH-HHHHHHHHHTTTTCT----------------TCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT
T ss_pred             CCCcEEEEECCCcHHH-HHHHHHHHcCcccCC----------------CceEEEEEecCccccchhcchhhhhccccccc
Confidence            46889999996 7778 556666766654321                12244556665541110               


Q ss_pred             ------ccccccccCCCcEEEEEEECCChh--hH-------HHHHHHHHHHHhhhCC-CCCEEEEeecCCc
Q 029144           68 ------NRLRPLSYRGADVFLLAFSLISKA--SY-------ENVAKKWIPELRHYAP-GVPIILVGTKLDL  122 (198)
Q Consensus        68 ------~~~~~~~~~~~~~~i~v~d~~~~~--s~-------~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl  122 (198)
                            .......+.++|+++++-......  +.       ..+...+...+.++++ +.-+++|+|-.|.
T Consensus        85 ~~~~~~~~~~~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          85 LREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             ccCccccccchhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence                  011123467889999887654322  11       1223555666777765 5667777776664

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.43  E-value=0.045  Score=37.45  Aligned_cols=21  Identities=19%  Similarity=-0.039  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      -|.+.|..||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999988854

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=92.17  E-value=0.046  Score=40.10  Aligned_cols=18  Identities=28%  Similarity=0.329  Sum_probs=15.0

Q ss_pred             EEEEECCCCCCHHHHHHH
Q 029144            8 KCVTVGDGAVGKTCMLIS   25 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~   25 (198)
                      -.+|.|++|+||||++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            367899999999998844

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.13  E-value=0.06  Score=37.75  Aligned_cols=26  Identities=15%  Similarity=0.127  Sum_probs=21.3

Q ss_pred             CceeEEEEECCCCCCHHHHHHHHhhC
Q 029144            4 SRFIKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         4 ~~~~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      ++.--+.+.|++++|||+|++.+..-
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            34567889999999999999887753

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=91.42  E-value=0.066  Score=37.46  Aligned_cols=21  Identities=19%  Similarity=0.271  Sum_probs=17.8

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      +.+.|++++|||||+-.+...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            578999999999999776654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.22  E-value=0.21  Score=31.42  Aligned_cols=100  Identities=14%  Similarity=0.156  Sum_probs=56.1

Q ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCc----------------
Q 029144            1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ----------------   64 (198)
Q Consensus         1 m~~~~~~~i~vvG~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----------------   64 (198)
                      |......||.|+|..++|.+.-. .+.......+                     +.++|....                
T Consensus         1 m~~~~~~KI~IiGaG~vG~~~a~-~l~~~~l~~e---------------------l~L~Di~~~~~~g~a~Dl~~~~~~~   58 (148)
T d1ldna1           1 MKNNGGARVVVIGAGFVGASYVF-ALMNQGIADE---------------------IVLIDANESKAIGDAMDFNHGKVFA   58 (148)
T ss_dssp             CTTTTSCEEEEECCSHHHHHHHH-HHHHHTCCSE---------------------EEEECSSHHHHHHHHHHHHHHTTSS
T ss_pred             CCCCCCCeEEEECcCHHHHHHHH-HHHhcCCCce---------------------EEEEeeccccccchhccHhhCcccc
Confidence            67778889999998888865444 4443332211                     223332210                


Q ss_pred             ---cCcccccccccCCCcEEEEEEECCCh------hhH---HHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           65 ---EDYNRLRPLSYRGADVFLLAFSLISK------ASY---ENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        65 ---~~~~~~~~~~~~~~~~~i~v~d~~~~------~s~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                         ..........+.++|++++..-....      +.+   ..+...+...+.++.|+.-+++|.|=+|.
T Consensus        59 ~~~~~~~~~d~~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~  128 (148)
T d1ldna1          59 PKPVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDI  128 (148)
T ss_dssp             SSCCEEEECCGGGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHH
T ss_pred             CCCeEEEECCHHHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHH
Confidence               00001112456778988887654331      112   22235566677777788777777777775

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.19  E-value=0.074  Score=33.90  Aligned_cols=102  Identities=20%  Similarity=0.229  Sum_probs=54.2

Q ss_pred             CceeEEEEEC-CCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCccCc-------------c-
Q 029144            4 SRFIKCVTVG-DGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDY-------------N-   68 (198)
Q Consensus         4 ~~~~~i~vvG-~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------------~-   68 (198)
                      ++++||.|+| ..++|.+... .+..+.....                .....+.++|.+.....             . 
T Consensus         1 s~p~KV~IiGA~G~VG~~la~-~l~~~~~~~~----------------~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~   63 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLY-SIGNGSVFGK----------------DQPIILVLLDITPMMGVLDGVLMELQDCALPL   63 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHH-HHHTTTTTCT----------------TCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT
T ss_pred             CCceEEEEECCCCHHHHHHHH-HHHHHHhcCC----------------CCccEEEEecCccchhhhhhhhhhhccccccc
Confidence            4689999999 5889976554 4555443221                11234556665541110             0 


Q ss_pred             -------cccccccCCCcEEEEEEECCC------hhhHH---HHHHHHHHHHhhhCCCCC-EEEEeecCCc
Q 029144           69 -------RLRPLSYRGADVFLLAFSLIS------KASYE---NVAKKWIPELRHYAPGVP-IILVGTKLDL  122 (198)
Q Consensus        69 -------~~~~~~~~~~~~~i~v~d~~~------~~s~~---~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl  122 (198)
                             ......+.++|++++.-....      .+-+.   .+...+...+.++++... ++++.|-+|.
T Consensus        64 ~~~~~~~~~~~~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~  134 (154)
T d5mdha1          64 LKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT  134 (154)
T ss_dssp             EEEEEEESCHHHHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             ccccccCcccccccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHH
Confidence                   011134567888777665422      12222   223455556666666655 4555677665

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.11  E-value=0.059  Score=37.93  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999999877654

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.03  E-value=0.37  Score=30.15  Aligned_cols=93  Identities=16%  Similarity=0.315  Sum_probs=55.2

Q ss_pred             EEEEEC-CCCCCHHHHHHHHhhCCCCCCCCCccccceeEEEEECCeEEEEEEEeCCCc----------cCc--------c
Q 029144            8 KCVTVG-DGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQ----------EDY--------N   68 (198)
Q Consensus         8 ~i~vvG-~~~~GKttli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~--------~   68 (198)
                      ||.++| ...+| +++...+.......+                     +.++|....          ..+        .
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~~~e---------------------lvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~   59 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPLVSR---------------------LTLYDIAHTPGVAADLSHIETRATVKGYLGP   59 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTTCSE---------------------EEEEESSSHHHHHHHHTTSSSSCEEEEEESG
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCccce---------------------EEEEeccccchhhHHHhhhhhhcCCCeEEcC
Confidence            899999 58999 666777776654332                     224444320          000        0


Q ss_pred             cccccccCCCcEEEEEEECCC------hhhH---HHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           69 RLRPLSYRGADVFLLAFSLIS------KASY---ENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        69 ~~~~~~~~~~~~~i~v~d~~~------~~s~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      ..+...++++|++++..-...      .+.+   ..+.+.+...+.++.++.-++++.|=.|.
T Consensus        60 ~~~~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~  122 (144)
T d1mlda1          60 EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNS  122 (144)
T ss_dssp             GGHHHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHH
T ss_pred             CChHHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhh
Confidence            111234678998888765422      1112   22235666777777788888888888885

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.88  E-value=0.52  Score=31.46  Aligned_cols=66  Identities=15%  Similarity=0.074  Sum_probs=45.6

Q ss_pred             EEEEEEEeCCCccCcccccccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCEE-EEeecCCccc
Q 029144           53 TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPII-LVGTKLDLRD  124 (198)
Q Consensus        53 ~~~l~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~  124 (198)
                      .+.+.++|+|+...  ......+..+|.++++... +..+.... .++...+...  +.|++ +|.|+.+...
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~-~~~s~~~~-~~~~~~~~~~--~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNP-EISCLTDT-MKVGIVLKKA--GLAILGFVLNRYGRSD  177 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECS-CHHHHHHH-HHHHHHHHHT--TCEEEEEEEEEETSCT
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhcccccccc-cceecchh-hHHHHHHhhh--hhhhhhhhhccccccc
Confidence            35677999987643  2333456679999999986 45566666 5666666655  77776 8899998654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.83  E-value=0.075  Score=36.95  Aligned_cols=69  Identities=13%  Similarity=0.193  Sum_probs=39.1

Q ss_pred             EEEEEEeCCCccCccccc-ccccCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCE-EEEeecCCccc
Q 029144           54 VNLGLWDTAGQEDYNRLR-PLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPI-ILVGTKLDLRD  124 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~-iiv~nK~Dl~~  124 (198)
                      +.+.+.|+|+.-...... ......+|.++++.+. +..++... ......+....  .+.++ -++.|+.+...
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~-~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~  188 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAA-NNISKGIQKYAKSGGVRLGGIICNSRKVAN  188 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHH-HHHHHHHHHHBTTBBCEEEEEEEECCSSSC
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHH-HHHHHHHHhhccccceeccceEEeeecCCC
Confidence            557799998753322221 1222447887777765 56666665 45555555433  23333 36779877654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.63  E-value=0.083  Score=36.52  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=19.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Q 029144            7 IKCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         7 ~~i~vvG~~~~GKttli~~~~~~   29 (198)
                      .-|+|.|++|+||+.+.+.+-..
T Consensus        24 ~pvlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             SCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHHHHHHh
Confidence            45899999999999999877543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.01  E-value=0.49  Score=29.78  Aligned_cols=50  Identities=18%  Similarity=0.263  Sum_probs=33.6

Q ss_pred             cccCCCcEEEEEEECCCh----------h----hHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           73 LSYRGADVFLLAFSLISK----------A----SYENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~----------~----s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      ..+.++|++++.......          .    ....+...+...+.+.+|+.-++++-|=+|.
T Consensus        67 ~~~~~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~  130 (150)
T d1t2da1          67 DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDV  130 (150)
T ss_dssp             GGGTTCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHH
T ss_pred             cccCCCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHH
Confidence            456789988888875431          1    1222346667778888888777887787776

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.93  E-value=0.13  Score=31.19  Aligned_cols=24  Identities=17%  Similarity=0.043  Sum_probs=21.1

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      .-+-|.+-|..|+||+||.+.+..
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHH
Confidence            457899999999999999988864

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=89.88  E-value=0.23  Score=31.23  Aligned_cols=49  Identities=10%  Similarity=0.153  Sum_probs=28.9

Q ss_pred             ccCCCcEEEEEEECCChhh------H---HHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           74 SYRGADVFLLAFSLISKAS------Y---ENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~s------~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      .+.++|++++.........      +   ..+...+...+.++.++.-++++.|=+|.
T Consensus        69 ~~~~adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv  126 (146)
T d1ez4a1          69 DCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDI  126 (146)
T ss_dssp             GGTTCSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHH
T ss_pred             HhccccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHH
Confidence            4578998888765432211      1   12235666777777777777777676665

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.19  E-value=0.085  Score=37.67  Aligned_cols=14  Identities=36%  Similarity=0.413  Sum_probs=13.3

Q ss_pred             EEECCCCCCHHHHH
Q 029144           10 VTVGDGAVGKTCML   23 (198)
Q Consensus        10 ~vvG~~~~GKttli   23 (198)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            79999999999988

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.35  E-value=0.097  Score=34.31  Aligned_cols=21  Identities=14%  Similarity=0.213  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      |+|+|...+|||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999988754

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.33  E-value=0.094  Score=37.57  Aligned_cols=15  Identities=33%  Similarity=0.397  Sum_probs=13.7

Q ss_pred             EEEECCCCCCHHHHH
Q 029144            9 CVTVGDGAVGKTCML   23 (198)
Q Consensus         9 i~vvG~~~~GKttli   23 (198)
                      -+++|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            489999999999987

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.27  E-value=0.11  Score=37.28  Aligned_cols=15  Identities=33%  Similarity=0.375  Sum_probs=13.7

Q ss_pred             EEEECCCCCCHHHHH
Q 029144            9 CVTVGDGAVGKTCML   23 (198)
Q Consensus         9 i~vvG~~~~GKttli   23 (198)
                      -+++|.+|+|||||.
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            369999999999998

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.80  E-value=0.19  Score=31.91  Aligned_cols=50  Identities=22%  Similarity=0.263  Sum_probs=29.4

Q ss_pred             cccCCCcEEEEEEECCChhh------H---HHHHHHHHHHHhhhCC-CCCEEEEeecCCc
Q 029144           73 LSYRGADVFLLAFSLISKAS------Y---ENVAKKWIPELRHYAP-GVPIILVGTKLDL  122 (198)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~s------~---~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl  122 (198)
                      ..++++|++++.......+.      +   ......+...+.++++ +.-++++.|-+|.
T Consensus        76 ~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          76 VAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            35678999998876543221      1   1223455666666664 4556666777665

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.34  E-value=0.19  Score=35.13  Aligned_cols=37  Identities=24%  Similarity=0.250  Sum_probs=25.4

Q ss_pred             EEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeecC
Q 029144           80 VFLLAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKL  120 (198)
Q Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~  120 (198)
                      .+++|... ++.+..+. .+....+...  ++|+ -+|+|+.
T Consensus       200 ~~~lVt~p-e~~~~~~~-~r~~~~l~~~--gi~~~~vVvN~v  237 (296)
T d1ihua1         200 RLVLVARL-QKSTLQEV-ARTHLELAAI--GLKNQYLVINGV  237 (296)
T ss_dssp             EEEEEEES-CHHHHHHH-HHHHHHHHHH--TCCCEEEEEEEE
T ss_pred             eeeEecCc-chhHHHHH-HHHHHHHHhc--CCCceEEEEcCC
Confidence            55666554 46667777 6777777777  6776 4777996

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.31  E-value=0.19  Score=34.89  Aligned_cols=40  Identities=10%  Similarity=-0.031  Sum_probs=23.1

Q ss_pred             CcEEEEEEECCChhhHHHHHHHHHHHHhhhCCCCCE-EEEeecCC
Q 029144           78 ADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPI-ILVGTKLD  121 (198)
Q Consensus        78 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-iiv~nK~D  121 (198)
                      ++.+++|... +..+..+. .++...+...  +.|+ -+|.|+.-
T Consensus       183 ~~~~vlV~~p-~~~~~~~~-~r~~~~l~~~--~~~~~~iV~N~~~  223 (279)
T d1ihua2         183 RTKVLLVTLP-ETTPVLEA-ANLQADLERA--GIHPWGWIINNSL  223 (279)
T ss_dssp             TEEEEEEECS-SHHHHHHH-HHHHHHHHHT--TCCCCEEEEEEES
T ss_pred             cccceEeccc-cHhHHHHH-HHHHHHHHhc--CCCccEEEEcCCc
Confidence            4556666543 56666666 5666666665  4443 35568753

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=87.06  E-value=0.2  Score=35.12  Aligned_cols=68  Identities=12%  Similarity=0.078  Sum_probs=35.4

Q ss_pred             EEEEEEeCCCccCcccccccc-cCCCcEEEEEEECCChhhHHHHHHHHHHHHhhhC--CCCCE-EEEeecCCcc
Q 029144           54 VNLGLWDTAGQEDYNRLRPLS-YRGADVFLLAFSLISKASYENVAKKWIPELRHYA--PGVPI-ILVGTKLDLR  123 (198)
Q Consensus        54 ~~l~i~D~~G~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~-iiv~nK~Dl~  123 (198)
                      +.+.++|+|+........... ...++.++++.. .+..+.... ..+...+....  ++.++ -+|.|+.+..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~-~~~~~~i~~~~~~~~~~~~gvv~n~~~~~  190 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAA-NNISKGIVKYANSGSVRLGGLICNSRNTD  190 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHH-HHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHH-HHHHHHHHhhhhcccccccceeehhhcch
Confidence            556788988754322222111 234566665554 455555555 44444444322  34554 3778887653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=86.96  E-value=0.54  Score=29.26  Aligned_cols=49  Identities=12%  Similarity=0.180  Sum_probs=29.6

Q ss_pred             ccCCCcEEEEEEECCChh--h----H---HHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           74 SYRGADVFLLAFSLISKA--S----Y---ENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~--s----~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      .+.++|++++........  +    +   ..+...+...+.++.++--++++.|=+|.
T Consensus        67 ~~~~aDiVvitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDv  124 (142)
T d1o6za1          67 DTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDL  124 (142)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHH
T ss_pred             HhhhcCEEEEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHH
Confidence            357899998876643321  1    1   12234556666667677666676677765

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.93  E-value=0.15  Score=36.04  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            7899999999999998766543

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=86.52  E-value=1.5  Score=28.03  Aligned_cols=54  Identities=15%  Similarity=0.193  Sum_probs=42.3

Q ss_pred             CCChhhHHHHHHHHHHHHhhhCCCCCEEEEeecCCcccccccccCCCCCccccHHHHHHHHHHcCCCEEEE
Q 029144           87 LISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVPITTAQGEELRKLIGAPVYIE  157 (198)
Q Consensus        87 ~~~~~s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (198)
                      .+|..+++....+..+.+...  +.|+|+++.......              ..+++.+++...++ +++.
T Consensus         2 ~sd~~~l~~~v~~~~~~l~~A--krPvIi~G~g~~~~~--------------a~~~l~~lae~~~~-Pv~t   55 (175)
T d1zpda1           2 ASDEASLNAAVDETLKFIANR--DKVAVLVGSKLRAAG--------------AEEAAVKFTDALGG-AVAT   55 (175)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTC--SCEEEEECTTTTTTT--------------CHHHHHHHHHHHCC-CEEE
T ss_pred             CCChHHHHHHHHHHHHHHHcC--CCEEEEECcCccccc--------------hHHHHHHHHHhhce-eEEe
Confidence            367777877777777888776  899999999887743              45688999999999 4554

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=86.44  E-value=1.1  Score=27.60  Aligned_cols=50  Identities=18%  Similarity=0.262  Sum_probs=28.4

Q ss_pred             cccCCCcEEEEEEECCChh------hH---HHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           73 LSYRGADVFLLAFSLISKA------SY---ENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~------s~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      ..+.++|.+++..-.....      .+   ..+...+...+.+++|+--++++.|=+|.
T Consensus        65 ~~~~dadvvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~  123 (142)
T d1guza1          65 ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDI  123 (142)
T ss_dssp             GGGTTCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHH
T ss_pred             HHhcCCeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHH
Confidence            3467888888876542211      11   11124555666677666666666676665

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.19  E-value=0.25  Score=34.47  Aligned_cols=20  Identities=20%  Similarity=0.238  Sum_probs=16.9

Q ss_pred             EEEECCCCCCHHHHHHHHhh
Q 029144            9 CVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~   28 (198)
                      +.+.|++++|||+|+..+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            57899999999999966654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.97  E-value=0.27  Score=33.57  Aligned_cols=19  Identities=16%  Similarity=0.233  Sum_probs=16.7

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029144            9 CVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~   27 (198)
                      +++-|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6788999999999997765

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.77  E-value=0.3  Score=32.31  Aligned_cols=24  Identities=8%  Similarity=-0.006  Sum_probs=20.8

Q ss_pred             ceeEEEEECCCCCCHHHHHHHHhh
Q 029144            5 RFIKCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         5 ~~~~i~vvG~~~~GKttli~~~~~   28 (198)
                      ....+++-|++|+|||++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999977664

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=85.71  E-value=0.26  Score=32.60  Aligned_cols=19  Identities=26%  Similarity=0.386  Sum_probs=15.6

Q ss_pred             EEEEECCC-CCCHHHHHHHH
Q 029144            8 KCVTVGDG-AVGKTCMLISY   26 (198)
Q Consensus         8 ~i~vvG~~-~~GKttli~~~   26 (198)
                      |+.|.|-. ||||||+.-.+
T Consensus         3 ~~~i~gt~~GVGKTtvs~~L   22 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCAL   22 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHH
Confidence            68899996 99999998433

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.65  E-value=0.28  Score=33.22  Aligned_cols=19  Identities=21%  Similarity=0.349  Sum_probs=16.8

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q 029144            9 CVTVGDGAVGKTCMLISYT   27 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~   27 (198)
                      +++-|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999997665

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=85.51  E-value=0.26  Score=34.40  Aligned_cols=21  Identities=19%  Similarity=0.275  Sum_probs=17.5

Q ss_pred             EEEECCCCCCHHHHHHHHhhC
Q 029144            9 CVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         9 i~vvG~~~~GKttli~~~~~~   29 (198)
                      +.+.|++++|||+|+..+...
T Consensus        60 tei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHHH
Confidence            568999999999999776643

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.31  E-value=0.62  Score=29.08  Aligned_cols=49  Identities=18%  Similarity=0.356  Sum_probs=32.2

Q ss_pred             ccCCCcEEEEEEECCCh------hhH---HHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           74 SYRGADVFLLAFSLISK------ASY---ENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~------~s~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      .+.++|++++..-....      +-+   ..+.....+.+.++.|+..+++|.|=+|.
T Consensus        66 ~~~~aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~  123 (145)
T d2cmda1          66 ALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNT  123 (145)
T ss_dssp             HHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHH
T ss_pred             ccCCCCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchH
Confidence            35688999888755321      112   22235566777777788888888888885

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=85.12  E-value=0.23  Score=34.80  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=18.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhhC
Q 029144            8 KCVTVGDGAVGKTCMLISYTSN   29 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~~   29 (198)
                      |++++|.+|+|||+|+..+..+
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHT
T ss_pred             eEeeccCCCCChHHHHHHHHhh
Confidence            6889999999999999765544

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=84.83  E-value=0.24  Score=30.29  Aligned_cols=21  Identities=10%  Similarity=-0.023  Sum_probs=16.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhh
Q 029144            8 KCVTVGDGAVGKTCMLISYTS   28 (198)
Q Consensus         8 ~i~vvG~~~~GKttli~~~~~   28 (198)
                      ..++.++.|+|||+++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            347799999999998855543

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=84.56  E-value=1.1  Score=27.72  Aligned_cols=50  Identities=18%  Similarity=0.238  Sum_probs=27.4

Q ss_pred             cccCCCcEEEEEEECCChh--h----H---HHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           73 LSYRGADVFLLAFSLISKA--S----Y---ENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        73 ~~~~~~~~~i~v~d~~~~~--s----~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      ..+.++|++++..-.....  +    +   ..+...+...+.++.|+--++++.|=+|.
T Consensus        64 ~~~~~adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv  122 (142)
T d1y6ja1          64 SDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDI  122 (142)
T ss_dssp             GGGTTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHH
T ss_pred             HHhCCCceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHH
Confidence            3567889888875433221  1    1   11123455566667676667777776665

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.43  E-value=0.97  Score=27.90  Aligned_cols=49  Identities=27%  Similarity=0.445  Sum_probs=30.0

Q ss_pred             ccCCCcEEEEEEECCCh------hhH---HHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           74 SYRGADVFLLAFSLISK------ASY---ENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~------~s~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      .++++|++++..-....      +.+   ..+...+...+.+++|+.-++++.|=+|.
T Consensus        64 ~~~~adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~  121 (140)
T d1a5za1          64 DLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDV  121 (140)
T ss_dssp             GGTTCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHH
T ss_pred             HhcCCCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHH
Confidence            46789988887644221      111   11235556677777777777777776665

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=83.54  E-value=0.75  Score=28.70  Aligned_cols=49  Identities=14%  Similarity=0.190  Sum_probs=30.5

Q ss_pred             ccCCCcEEEEEEECCC----h------h---hHHHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           74 SYRGADVFLLAFSLIS----K------A---SYENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~----~------~---s~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      .+.++|++++......    .      +   ....+...+...+.++.|+.-++++.|=+|.
T Consensus        66 ~l~~adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~  127 (146)
T d1hyha1          66 ALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDV  127 (146)
T ss_dssp             GGTTCSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHH
T ss_pred             HhccccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHH
Confidence            4678899988755321    0      1   1122335666677777777777887777776

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=82.61  E-value=0.75  Score=28.96  Aligned_cols=49  Identities=24%  Similarity=0.409  Sum_probs=30.2

Q ss_pred             ccCCCcEEEEEEECC----------C-hhhH---HHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           74 SYRGADVFLLAFSLI----------S-KASY---ENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~----------~-~~s~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      .++++|++++..-..          + .+.+   ..+...+...+.++.++--++++-|=+|.
T Consensus        73 ~~~~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~  135 (154)
T d1pzga1          73 ALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDC  135 (154)
T ss_dssp             HHTTCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH
T ss_pred             hhcCCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHH
Confidence            456788888876432          1 1222   22235667777777777777777777766

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=81.30  E-value=2  Score=27.12  Aligned_cols=49  Identities=20%  Similarity=0.371  Sum_probs=31.5

Q ss_pred             ccCCCcEEEEEEECCCh------hhHHH---HHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           74 SYRGADVFLLAFSLISK------ASYEN---VAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~------~s~~~---~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      .+.++|++++.......      +.+..   +...+...+....++--+++|.|=+|.
T Consensus        85 ~~~~adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv  142 (160)
T d1i0za1          85 VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDI  142 (160)
T ss_dssp             GGTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHH
T ss_pred             hcccccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHH
Confidence            35678888887765321      22222   335666777777777778888888876

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=80.80  E-value=2.1  Score=26.40  Aligned_cols=49  Identities=27%  Similarity=0.388  Sum_probs=28.6

Q ss_pred             ccCCCcEEEEEEECCChh--h----H---HHHHHHHHHHHhhhCCCCCEEEEeecCCc
Q 029144           74 SYRGADVFLLAFSLISKA--S----Y---ENVAKKWIPELRHYAPGVPIILVGTKLDL  122 (198)
Q Consensus        74 ~~~~~~~~i~v~d~~~~~--s----~---~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl  122 (198)
                      .+.++|++++..-.....  +    +   ..+...+...+.++.++--++++-|=+|.
T Consensus        66 ~~~daDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDv  123 (143)
T d1llda1          66 ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDI  123 (143)
T ss_dssp             GGTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHH
T ss_pred             HhhCCcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHH
Confidence            356788888876553321  1    1   11224455566666677767777777775

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=80.08  E-value=0.61  Score=28.89  Aligned_cols=17  Identities=24%  Similarity=0.305  Sum_probs=13.3

Q ss_pred             EEECCCCCCHHH-HHHHH
Q 029144           10 VTVGDGAVGKTC-MLISY   26 (198)
Q Consensus        10 ~vvG~~~~GKtt-li~~~   26 (198)
                      +++|+=.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            568999999999 44444