Citrus Sinensis ID: 029147

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLSAASKPSTAAA
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEccccccccccccccccEEEEccccccccccccEEEEEEEEcccccccccccccccccccccccHHHHHHcccccccccEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEcccHHHEEEEEEEccccccccccccccccccccHHHHHHHHHHccccccccHHEEEEEEcccccccccccccccHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mggcdkqgfpmkqgvltpgRVRLLlhrgtpcfrgygrrdgerrrksvrgcivspdlsVLNLVIVKkgehdlpgltdtekprmrgpkrASKIRKLFnlskeddvRKYVNTYRRTFttktgkkvskapkiqrlvtplTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSrlsaaskpstaaa
Flexible Loop (DISEMBL)
mggcdkqgfpmkqgvltpgrvrlllhrgtpcfrgygrrdgerrrksvrgcivspdlsvLNLVIVKkgehdlpgltdtekprmrgpkraskirklfnlskeddvrkyvntyrrtfttktgkkvskapkiqrlvtpltlqrkraRIAEKKQRIAKAKAEAAEYQKLLATrlkeqrerrseslakkrsrlsaaskpstaaa
Low Complexity Region (SEG)
MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFrgygrrdgerrrksvrgCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLqrkrariaekkqriakakaeaaEYQKLLATRLKEQRERRSESLAKKRSRLSAASKPSTAAA
Disordered region (IsUnstruct)
*************GVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKG***************************FNL***DDVRKYVNTYRRTFTTK************RLVTPL***************************************************************
Disordered Region (DISOPRED)
*GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLP****************SKIRKLFNLSKEDDVRKYVN******************KIQRLVTPLTLQRKRA******************YQKL**********************************
Disordered Region (DISEMBL)
MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTE*********ASKIRKLFNLSKEDDVRKYVNTYRRTFT*********APKIQRLVTPLTLQRKRA**************EAAEYQKLLATRLK****************************
Disordered Region (DISPRO)
********FPMKQGVLTPGRVRLLLHRGTPCFRG********RRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRE************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTxxxxxxxxxxxxxxxxxxxxxxxxxxxxLATRLKEQRERRSESLAKKRSRLSAASKPSTAAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q9M3V8	251	40S ribosomal protein S6	N/A	no	1.0	0.788	0.898	1e-99
P51430	249	40S ribosomal protein S6-	yes	no	0.989	0.787	0.898	9e-97
O48549	250	40S ribosomal protein S6-	yes	no	0.989	0.784	0.888	1e-90
P29345	199	40S ribosomal protein S6	N/A	no	0.969	0.964	0.852	2e-87
P62755	249	40S ribosomal protein S6	yes	no	0.969	0.771	0.661	3e-61
P62754	249	40S ribosomal protein S6	yes	no	0.969	0.771	0.661	3e-61
Q4R4K6	249	40S ribosomal protein S6	N/A	no	0.969	0.771	0.661	3e-61
P62753	249	40S ribosomal protein S6	yes	no	0.969	0.771	0.661	3e-61
Q5E995	249	40S ribosomal protein S6	no	no	0.964	0.767	0.673	4e-61
P47838	249	40S ribosomal protein S6	yes	no	0.969	0.771	0.656	7e-61

>sp|Q9M3V8|RS6_ASPOF 40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1

 Score =  362 bits (929), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 178/198 (89%), Positives = 189/198 (95%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
           MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVSPDLSVLN
Sbjct: 53  MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLN 112

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
           LVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT K GK
Sbjct: 113 LVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTNKKGK 172

Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
             SKAPKIQRLVTPLTLQRKRARIAEKK+R+AKAK+EAAEYQKLLA+RLKEQR+RRSESL
Sbjct: 173 TCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSESL 232

Query: 181 AKKRSRLSAASKPSTAAA 198
           AKKRSRLSAA+  + + +
Sbjct: 233 AKKRSRLSAAAAKTASVS 250

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.
Asparagus officinalis (taxid: 4686)

>sp|P51430|RS62_ARATH 40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3

 Score =  352 bits (903), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 177/197 (89%), Positives = 187/197 (94%), Gaps = 1/197 (0%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
           MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRG+GRR GERRRKSVRGCIVSPDLSVLN
Sbjct: 53  MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLN 112

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
           LVIVKKG  DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GK
Sbjct: 113 LVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGK 172

Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
           KVSKAPKIQRLVTPLTLQRKRARIA+KK+RIAKA ++AA+YQKLLA+RLKEQR+RRSESL
Sbjct: 173 KVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESL 232

Query: 181 AKKRSRLSAA-SKPSTA 196
           AKKRSRLS+A +KP  A
Sbjct: 233 AKKRSRLSSAPAKPVAA 249

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Arabidopsis thaliana (taxid: 3702)

>sp|O48549|RS61_ARATH 40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2

 Score =  332 bits (850), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 175/197 (88%), Positives = 187/197 (94%), Gaps = 1/197 (0%)

Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
           GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRG+GRR GERRRKSVRGCIVSPDLSVLNL
Sbjct: 54  GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNL 113

Query: 62  VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
           VIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+
Sbjct: 114 VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKE 173

Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
           VSKAPKIQRLVTPLTLQRKRARIA+KK++IAKA ++AA+YQKLLA+RLKEQR+RRSESLA
Sbjct: 174 VSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLA 233

Query: 182 KKRSRL-SAASKPSTAA 197
           KKRSRL SAA+KPS  A
Sbjct: 234 KKRSRLSSAAAKPSVTA 250

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Arabidopsis thaliana (taxid: 3702)

>sp|P29345|RS6_TOBAC 40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2

 Score =  321 bits (823), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/197 (85%), Positives = 179/197 (90%), Gaps = 5/197 (2%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
           MGGCDKQGFPMKQGVLTPGRVRLLL+RGTPCFRGYGRR+GERRRKSVRGCIVSPDLSVLN
Sbjct: 8   MGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLN 67

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
           LVIVKKGE+DLPGLTDTEKPRMRGP+   +   L+   KEDDVRKYVNT    FTTK   
Sbjct: 68  LVIVKKGENDLPGLTDTEKPRMRGPREPQRSEALY--FKEDDVRKYVNTTAE-FTTKW-- 122

Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
           K SKAPKIQRLVTPLTLQRKRARIA+KK+RIAKAK+EAAEYQKLLA+RLKEQRE+RSESL
Sbjct: 123 KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESL 182

Query: 181 AKKRSRLSAASKPSTAA 197
           AKKRSRLSAASKPS AA
Sbjct: 183 AKKRSRLSAASKPSIAA 199

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Nicotiana tabacum (taxid: 4097)

>sp|P62755|RS6_RAT 40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1

 Score =  234 bits (597), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 131/198 (66%), Positives = 150/198 (75%), Gaps = 6/198 (3%)

Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
           GG DKQGFPMKQGVLT GRVRLLL +G  C+R   RR GER+RKSVRGCIV  +LSVLNL
Sbjct: 54  GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111

Query: 62  VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
           VIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K 
Sbjct: 112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKP 169

Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
            +KAPKIQRLVTP  LQ KR RIA KKQR  K K EAAEY KLLA R+KE +E+R E +A
Sbjct: 170 RTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIA 229

Query: 182 KKR--SRLSAASKPSTAA 197
           K+R  S L A++  S ++
Sbjct: 230 KRRRLSSLRASTSKSESS 247

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Rattus norvegicus (taxid: 10116)

>sp|P62754|RS6_MOUSE 40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1

 Score =  234 bits (597), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 131/198 (66%), Positives = 150/198 (75%), Gaps = 6/198 (3%)

Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
           GG DKQGFPMKQGVLT GRVRLLL +G  C+R   RR GER+RKSVRGCIV  +LSVLNL
Sbjct: 54  GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111

Query: 62  VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
           VIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K 
Sbjct: 112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKP 169

Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
            +KAPKIQRLVTP  LQ KR RIA KKQR  K K EAAEY KLLA R+KE +E+R E +A
Sbjct: 170 RTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIA 229

Query: 182 KKR--SRLSAASKPSTAA 197
           K+R  S L A++  S ++
Sbjct: 230 KRRRLSSLRASTSKSESS 247

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Mus musculus (taxid: 10090)

>sp|Q4R4K6|RS6_MACFA 40S ribosomal protein S6 OS=Macaca fascicularis GN=RPS6 PE=2 SV=1

 Score =  234 bits (597), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 131/198 (66%), Positives = 150/198 (75%), Gaps = 6/198 (3%)

Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
           GG DKQGFPMKQGVLT GRVRLLL +G  C+R   RR GER+RKSVRGCIV  +LSVLNL
Sbjct: 54  GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111

Query: 62  VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
           VIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K 
Sbjct: 112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKP 169

Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
            +KAPKIQRLVTP  LQ KR RIA KKQR  K K EAAEY KLLA R+KE +E+R E +A
Sbjct: 170 RTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIA 229

Query: 182 KKR--SRLSAASKPSTAA 197
           K+R  S L A++  S ++
Sbjct: 230 KRRRLSSLRASTSKSESS 247

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Macaca fascicularis (taxid: 9541)

>sp|P62753|RS6_HUMAN 40S ribosomal protein S6 OS=Homo sapiens GN=RPS6 PE=1 SV=1

 Score =  234 bits (597), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 131/198 (66%), Positives = 150/198 (75%), Gaps = 6/198 (3%)

Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
           GG DKQGFPMKQGVLT GRVRLLL +G  C+R   RR GER+RKSVRGCIV  +LSVLNL
Sbjct: 54  GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111

Query: 62  VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
           VIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K 
Sbjct: 112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKP 169

Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
            +KAPKIQRLVTP  LQ KR RIA KKQR  K K EAAEY KLLA R+KE +E+R E +A
Sbjct: 170 RTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIA 229

Query: 182 KKR--SRLSAASKPSTAA 197
           K+R  S L A++  S ++
Sbjct: 230 KRRRLSSLRASTSKSESS 247

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Homo sapiens (taxid: 9606)

>sp|Q5E995|RS6_BOVIN 40S ribosomal protein S6 OS=Bos taurus GN=RPS6 PE=2 SV=1

 Score =  233 bits (595), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 134/199 (67%), Positives = 151/199 (75%), Gaps = 8/199 (4%)

Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
           GG DKQGFPMKQGVLT GRVRLLL +G  C+R   RR GER+RKSVRGCIV  +LSVLNL
Sbjct: 54  GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111

Query: 62  VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
           VIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV    R    K GKK
Sbjct: 112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVV---RKPLNKDGKK 168

Query: 122 V-SKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
             +KAPKIQRLVTP  LQ KR RIA KKQR  K K EAAEY KLLA R+KE +E+R E +
Sbjct: 169 PRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228

Query: 181 AKKR--SRLSAASKPSTAA 197
           AK+R  S L A++  S ++
Sbjct: 229 AKRRRLSSLRASTSKSESS 247

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Bos taurus (taxid: 9913)

>sp|P47838|RS6_CHICK 40S ribosomal protein S6 OS=Gallus gallus GN=RPS6 PE=2 SV=1

 Score =  233 bits (594), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 130/198 (65%), Positives = 150/198 (75%), Gaps = 6/198 (3%)

Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
           GG DKQGFPMKQGVLT GRVRLLL +G  C+R   RR GER+RKSVRGCIV  +LSVLNL
Sbjct: 54  GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRP--RRTGERKRKSVRGCIVDANLSVLNL 111

Query: 62  VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
           VIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    +  K 
Sbjct: 112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLNKEGKKP 169

Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
            +KAPKIQRLVTP  LQ KR RIA KKQR  K K EAA+Y KLLA R+KE +E+R E +A
Sbjct: 170 RTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQEQIA 229

Query: 182 KKR--SRLSAASKPSTAA 197
           K+R  S L A++  S ++
Sbjct: 230 KRRRLSSLRASTSKSESS 247

May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
255569734	197	40S ribosomal protein S6, putative [Rici	0.994	1.0	0.959	1e-103
449431994	250	PREDICTED: 40S ribosomal protein S6-like	1.0	0.792	0.944	1e-102
224060423	249	predicted protein [Populus trichocarpa]	0.994	0.791	0.944	1e-102
225462854	249	PREDICTED: 40S ribosomal protein S6 isof	0.994	0.791	0.944	1e-101
224093728	249	predicted protein [Populus trichocarpa]	0.994	0.791	0.939	1e-101
449469843	249	PREDICTED: 40S ribosomal protein S6-like	0.994	0.791	0.934	1e-101
82623405	249	unknown [Solanum tuberosum]	0.994	0.791	0.934	1e-101
224081112	249	predicted protein [Populus trichocarpa]	0.994	0.791	0.934	1e-100
224066975	249	predicted protein [Populus trichocarpa]	0.989	0.787	0.938	1e-100
225459231	249	PREDICTED: 40S ribosomal protein S6 [Vit	0.994	0.791	0.934	1e-100

>gi|255569734|ref|XP_002525831.1| 40S ribosomal protein S6, putative [Ricinus communis] gi|223534836|gb|EEF36525.1| 40S ribosomal protein S6, putative [Ricinus communis]

 Score =  378 bits (971), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/197 (95%), Positives = 194/197 (98%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
           MGGCDKQGFPMKQGVLT GRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVS DLSVLN
Sbjct: 1   MGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLN 60

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
           LVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK
Sbjct: 61  LVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120

Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
           KVSKAPKIQRLVTPLTLQRKRARIA+KKQRIAKAK+EAA+YQKLLATRLKEQRERRSESL
Sbjct: 121 KVSKAPKIQRLVTPLTLQRKRARIAQKKQRIAKAKSEAADYQKLLATRLKEQRERRSESL 180

Query: 181 AKKRSRLSAASKPSTAA 197
           AKKRSRLSAASKPS AA
Sbjct: 181 AKKRSRLSAASKPSIAA 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431994|ref|XP_004133785.1| PREDICTED: 40S ribosomal protein S6-like [Cucumis sativus] gi|449477988|ref|XP_004155185.1| PREDICTED: 40S ribosomal protein S6-like [Cucumis sativus]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 187/198 (94%), Positives = 195/198 (98%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
           MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVS DLSVLN
Sbjct: 53  MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLN 112

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
           LVIVKKG++DLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR+FTTK+GK
Sbjct: 113 LVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRSFTTKSGK 172

Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
           KVSKAPKIQRLVTPLTLQRKR RIAEKK+RIAKAK+EAAEYQKLLA+RLKEQRERRSESL
Sbjct: 173 KVSKAPKIQRLVTPLTLQRKRGRIAEKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESL 232

Query: 181 AKKRSRLSAASKPSTAAA 198
           AKKRSRLSAASKPS AAA
Sbjct: 233 AKKRSRLSAASKPSIAAA 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060423|ref|XP_002300192.1| predicted protein [Populus trichocarpa] gi|118482123|gb|ABK92992.1| unknown [Populus trichocarpa] gi|222847450|gb|EEE84997.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/197 (94%), Positives = 194/197 (98%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
           MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVS DLSVLN
Sbjct: 53  MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLN 112

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
           LVIVKKG++DLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTK+GK
Sbjct: 113 LVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGK 172

Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
           KVSKAPKIQRLVTPLTLQRKRARI++KK+RIAKAK+EAAEYQKLLATRLKEQRERRSESL
Sbjct: 173 KVSKAPKIQRLVTPLTLQRKRARISDKKKRIAKAKSEAAEYQKLLATRLKEQRERRSESL 232

Query: 181 AKKRSRLSAASKPSTAA 197
           AKKRSRLS ASKPS AA
Sbjct: 233 AKKRSRLSIASKPSVAA 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462854|ref|XP_002271632.1| PREDICTED: 40S ribosomal protein S6 isoform 1 [Vitis vinifera] gi|296087487|emb|CBI34076.3| unnamed protein product [Vitis vinifera]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/197 (94%), Positives = 192/197 (97%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
           MGGCDKQGFPMKQGVLTPGRV LLLHRGTPCFRGYGRR+GERRRK+VRGCIVS DLSVLN
Sbjct: 53  MGGCDKQGFPMKQGVLTPGRVSLLLHRGTPCFRGYGRRNGERRRKAVRGCIVSQDLSVLN 112

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
           LVIVKKGE DLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTK+GK
Sbjct: 113 LVIVKKGESDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGK 172

Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
           K SKAPKIQRLVTPLTLQRKRARIAEKK+RIAKAK+EAAEYQKLLATRLKEQRERRSESL
Sbjct: 173 KCSKAPKIQRLVTPLTLQRKRARIAEKKKRIAKAKSEAAEYQKLLATRLKEQRERRSESL 232

Query: 181 AKKRSRLSAASKPSTAA 197
           AK+RSRLSAASKPS AA
Sbjct: 233 AKRRSRLSAASKPSVAA 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093728|ref|XP_002309965.1| predicted protein [Populus trichocarpa] gi|222852868|gb|EEE90415.1| predicted protein [Populus trichocarpa]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/197 (93%), Positives = 191/197 (96%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
           MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVS DLSVLN
Sbjct: 53  MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLN 112

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
           LVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTK+GK
Sbjct: 113 LVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGK 172

Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
           KVSKAPKIQRLVTPLTLQRKRARI++KK+RI KAKAEAAEYQKLLATRLKEQRERRSESL
Sbjct: 173 KVSKAPKIQRLVTPLTLQRKRARISDKKKRITKAKAEAAEYQKLLATRLKEQRERRSESL 232

Query: 181 AKKRSRLSAASKPSTAA 197
           AKKRSRLS ASKPS  A
Sbjct: 233 AKKRSRLSVASKPSVVA 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469843|ref|XP_004152628.1| PREDICTED: 40S ribosomal protein S6-like [Cucumis sativus] gi|449523798|ref|XP_004168910.1| PREDICTED: 40S ribosomal protein S6-like [Cucumis sativus]

 Score =  372 bits (954), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/197 (93%), Positives = 193/197 (97%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
           MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVS DLSVLN
Sbjct: 53  MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLN 112

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
           LVIVKKG++DLPGLTD+EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR+FTTK GK
Sbjct: 113 LVIVKKGDNDLPGLTDSEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRSFTTKAGK 172

Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
           KVSKAPKIQRLVTPLTLQRKR RIAEKK+RIAKAK+EAAEYQKLL++RLKEQRERRSESL
Sbjct: 173 KVSKAPKIQRLVTPLTLQRKRGRIAEKKKRIAKAKSEAAEYQKLLSSRLKEQRERRSESL 232

Query: 181 AKKRSRLSAASKPSTAA 197
           AKKRSRLSAASKPS AA
Sbjct: 233 AKKRSRLSAASKPSIAA 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82623405|gb|ABB87117.1| unknown [Solanum tuberosum]

 Score =  371 bits (953), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/197 (93%), Positives = 193/197 (97%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
           MGGCDKQGFPMKQGVLTPGRVRLLL+RGTPCFRG+GRR+GERRRKSVRGCIVSPDLSVLN
Sbjct: 53  MGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGHGRRNGERRRKSVRGCIVSPDLSVLN 112

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
           LVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR FTTKTGK
Sbjct: 113 LVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRNFTTKTGK 172

Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
             SKAPKIQRLVTPLTLQRKRARIA+KK+RIAKAK+EAA+YQKLLA+RLKEQRERRSESL
Sbjct: 173 NASKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAADYQKLLASRLKEQRERRSESL 232

Query: 181 AKKRSRLSAASKPSTAA 197
           AKKRSRLSAASKPS AA
Sbjct: 233 AKKRSRLSAASKPSIAA 249

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081112|ref|XP_002306298.1| predicted protein [Populus trichocarpa] gi|118485704|gb|ABK94702.1| unknown [Populus trichocarpa] gi|222855747|gb|EEE93294.1| predicted protein [Populus trichocarpa]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/197 (93%), Positives = 192/197 (97%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
           MGGCDKQGFPMKQGVLTPGRVRLLL+RGTPCFRGYGRR+GERRRKSVRGCIVS DLSVLN
Sbjct: 53  MGGCDKQGFPMKQGVLTPGRVRLLLYRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLN 112

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
           LVIVKKGE+DLPGLTD EKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTK+GK
Sbjct: 113 LVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGK 172

Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
           KVSKAPKIQRLVTPLTLQRKRARI++KK+RI+KAKAEAAEYQKLLATRLKEQRERRSESL
Sbjct: 173 KVSKAPKIQRLVTPLTLQRKRARISDKKKRISKAKAEAAEYQKLLATRLKEQRERRSESL 232

Query: 181 AKKRSRLSAASKPSTAA 197
           AKKRSRLS ASKPS  A
Sbjct: 233 AKKRSRLSVASKPSVVA 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066975|ref|XP_002302307.1| predicted protein [Populus trichocarpa] gi|222844033|gb|EEE81580.1| predicted protein [Populus trichocarpa]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/196 (93%), Positives = 192/196 (97%)

Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
           GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRR+GERRRKSVRGCIVS DLSVLNL
Sbjct: 54  GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSQDLSVLNL 113

Query: 62  VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
           VIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRR+FTTK+GKK
Sbjct: 114 VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRSFTTKSGKK 173

Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLA 181
           VSK PKIQRLVTPLTLQRKRARI++KK+RIAKAK+EAAEYQKLLATRLKEQRERRSESLA
Sbjct: 174 VSKGPKIQRLVTPLTLQRKRARISDKKKRIAKAKSEAAEYQKLLATRLKEQRERRSESLA 233

Query: 182 KKRSRLSAASKPSTAA 197
           KKRSRLS ASKPS AA
Sbjct: 234 KKRSRLSVASKPSIAA 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459231|ref|XP_002285752.1| PREDICTED: 40S ribosomal protein S6 [Vitis vinifera] gi|302141988|emb|CBI19191.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/197 (93%), Positives = 192/197 (97%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
           MGGCDKQGFPMKQGVLTPGRV LLLHRGTPCFRGYGRR+GERRRK+VRGCIVS DLSVLN
Sbjct: 53  MGGCDKQGFPMKQGVLTPGRVSLLLHRGTPCFRGYGRRNGERRRKAVRGCIVSQDLSVLN 112

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
           LVIVKKGE DLPGLTDTEKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRR+FTTK+GK
Sbjct: 113 LVIVKKGESDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRSFTTKSGK 172

Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
           K SKAPKIQRLVTPLTLQRKRARIAEKK+RIAKAK+EAAEYQKLLATRLKEQRERRSESL
Sbjct: 173 KCSKAPKIQRLVTPLTLQRKRARIAEKKKRIAKAKSEAAEYQKLLATRLKEQRERRSESL 232

Query: 181 AKKRSRLSAASKPSTAA 197
           AK+RSRLSAASKPS AA
Sbjct: 233 AKRRSRLSAASKPSVAA 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2142464	249	EMB3010 "embryo defective 3010	0.989	0.787	0.736	1.8e-69
UNIPROTKB|Q8LH97	250	P0594D10.135 "40S ribosomal pr	1.0	0.792	0.722	3e-69
TAIR|locus:2124854	250	RPS6 "ribosomal protein S6" [A	0.989	0.784	0.730	3.8e-69
UNIPROTKB|Q75LR5	245	OSJNBa0017N12.10 "40S ribosoma	0.964	0.779	0.732	5.6e-68
UNIPROTKB|A8J1G8	248	RPS6 "40S ribosomal protein S6	0.984	0.786	0.586	4.1e-49
ZFIN|ZDB-GENE-040801-8	249	zgc:92237 "zgc:92237" [Danio r	0.949	0.755	0.551	2.8e-43
UNIPROTKB|Q90YR8	249	rps6 "40S ribosomal protein S6	0.919	0.730	0.560	3.5e-43
UNIPROTKB|E1BG13	204	RPS6 "40S ribosomal protein S6	0.949	0.921	0.551	4.5e-43
UNIPROTKB|Q5E995	249	RPS6 "40S ribosomal protein S6	0.949	0.755	0.551	4.5e-43
UNIPROTKB|E2RP05	249	RPS6 "40S ribosomal protein S6	0.949	0.755	0.551	4.5e-43

TAIR|locus:2142464 EMB3010 "embryo defective 3010" [Arabidopsis thaliana (taxid:3702)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 145/197 (73%), Positives = 150/197 (76%)

Query:     1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLN 60
             MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLN
Sbjct:    53 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLN 112

Query:    61 LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
             LVIVKKG  DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVRKYVNTYRRTFT K GK
Sbjct:   113 LVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGK 172

Query:   121 KVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESL 180
             KVSKAPKIQRLVTPLTL                      +YQKLLA+RLKEQR+RRSESL
Sbjct:   173 KVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSESL 232

Query:   181 AKKRSRLSAA-SKPSTA 196
             AKKRSRLS+A +KP  A
Sbjct:   233 AKKRSRLSSAPAKPVAA 249

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q8LH97 P0594D10.135 "40S ribosomal protein S6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
 Identities = 143/198 (72%), Positives = 151/198 (76%)

Query:     1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLN 60
             MGGCDKQGFPMKQGVLT GRVRLLLHRGTPCF                 CIVS DLSV+N
Sbjct:    53 MGGCDKQGFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVIN 112

Query:    61 LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
             LVIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNLSK+DDVRKYVNTYRRTFTTK GK
Sbjct:   113 LVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGK 172

Query:   121 KVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESL 180
             KVSKAPKIQRLVTPLTL                      EYQKLLA RLKEQRERRSESL
Sbjct:   173 KVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232

Query:   181 AKKRSRLSAASKPSTAAA 198
             AK+RS+LS+A+K +   A
Sbjct:   233 AKRRSKLSSAAKAAATTA 250

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

TAIR|locus:2124854 RPS6 "ribosomal protein S6" [Arabidopsis thaliana (taxid:3702)]

 Score = 701 (251.8 bits), Expect = 3.8e-69, P = 3.8e-69
 Identities = 144/197 (73%), Positives = 150/197 (76%)

Query:     2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNL 61
             GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCF                 CIVSPDLSVLNL
Sbjct:    54 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNL 113

Query:    62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
             VIVKKGE+DLPGLTDTEKPRMRGPKRASKIRKLFNL KEDDVR YVNTYRR FT K GK+
Sbjct:   114 VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKE 173

Query:   122 VSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLA 181
             VSKAPKIQRLVTPLTL                      +YQKLLA+RLKEQR+RRSESLA
Sbjct:   174 VSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESLA 233

Query:   182 KKRSRLS-AASKPSTAA 197
             KKRSRLS AA+KPS  A
Sbjct:   234 KKRSRLSSAAAKPSVTA 250

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0006412 "translation" evidence=IEA;ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0040007 "growth" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

UNIPROTKB|Q75LR5 OSJNBa0017N12.10 "40S ribosomal protein S6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 140/191 (73%), Positives = 148/191 (77%)

Query:     1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLN 60
             MGGCDKQGFPMKQGVLT GRVRLLLHRGTPCF                 CIVS DLSV+N
Sbjct:    53 MGGCDKQGFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVIN 112

Query:    61 LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
             LVIVKKG++DLPGLTDTEKPRMRGPKRASKIRKLFNL+K+DDVRKYVNTYRRTFTTK GK
Sbjct:   113 LVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGK 172

Query:   121 KVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESL 180
             KVSKAPKIQRLVTPLTL                      EYQKLLA RLKEQRERRSESL
Sbjct:   173 KVSKAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232

Query:   181 AKKRSRLSAAS 191
             AK+RS+LSAA+
Sbjct:   233 AKRRSKLSAAT 243

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

UNIPROTKB|A8J1G8 RPS6 "40S ribosomal protein S6" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 115/196 (58%), Positives = 123/196 (62%)

Query:     2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNL 61
             GG DKQGF MKQGVLT  RVRLL+  G   F                 CIVSPDL+VLNL
Sbjct:    54 GGQDKQGFAMKQGVLTNARVRLLMTPGDQGFRGYGRRKGERRRKSVRGCIVSPDLAVLNL 113

Query:    62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
             VIVKKGE +LPGLTD EKPR+RGPKRASKIRK+FNL K DDVRKYV  Y R  T K GKK
Sbjct:   114 VIVKKGEQELPGLTDEEKPRIRGPKRASKIRKMFNLGKVDDVRKYVTIYSRERTDKNGKK 173

Query:   122 VSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLA 181
               K PKIQRLVTP  L                      EY KLL  RLKEQRERRSESLA
Sbjct:   174 HRKCPKIQRLVTPAALQRKRARKSLKKRQQEKNKTDAAEYHKLLMQRLKEQRERRSESLA 233

Query:   182 KKRSRLSAASKPSTAA 197
             KKR+ +  AS+ S  A
Sbjct:   234 KKRA-MRVASQASKEA 248

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

ZFIN|ZDB-GENE-040801-8 zgc:92237 "zgc:92237" [Danio rerio (taxid:7955)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 108/196 (55%), Positives = 125/196 (63%)

Query:     2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNL 61
             GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNL
Sbjct:    54 GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNL 111

Query:    62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
             VIV+KGE D+PGLTD+  PR  GPKRAS+IRKLFNLSKEDDVR+YV   RR  T K GKK
Sbjct:   112 VIVRKGEKDIPGLTDSTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRRPLT-KEGKK 168

Query:   122 V-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESL 180
               +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +
Sbjct:   169 PRTKAPKIQRLVTPRVLQHKRRRIALKRQRTLKNKEAAAEYTKLLAKRMKEAKEKRQEQI 228

Query:   181 AKKRSRLSAASKPSTA 196
             AK+R RLS+  + ST+
Sbjct:   229 AKRR-RLSSL-RASTS 242

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IBA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|Q90YR8 rps6 "40S ribosomal protein S6" [Ictalurus punctatus (taxid:7998)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 106/189 (56%), Positives = 121/189 (64%)

Query:     2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNL 61
             GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNL
Sbjct:    54 GGNDKQGFPMKQGVLTNGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNL 111

Query:    62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
             VI++KGE D+PGLTD+  PR  GPKRAS+IRKLFNLSKEDDVR+YV   RR  T K GKK
Sbjct:   112 VIIRKGEKDIPGLTDSTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRRPLT-KEGKK 168

Query:   122 V-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESL 180
               +KAPKIQRLVTP  L                      EY KLLA RLKE +E+R E +
Sbjct:   169 PRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQEKI 228

Query:   181 AKKRSRLSA 189
             AK+R RLS+
Sbjct:   229 AKRR-RLSS 236

GO:0005634 "nucleus" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0042593 "glucose homeostasis" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

UNIPROTKB|E1BG13 RPS6 "40S ribosomal protein S6" [Bos taurus (taxid:9913)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 108/196 (55%), Positives = 124/196 (63%)

Query:     2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNL 61
             GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNL
Sbjct:     9 GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNL 66

Query:    62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
             VIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    K GKK
Sbjct:    67 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLN-KDGKK 123

Query:   122 V-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESL 180
               +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +
Sbjct:   124 PRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 183

Query:   181 AKKRSRLSAASKPSTA 196
             AK+R RLS+  + ST+
Sbjct:   184 AKRR-RLSSL-RASTS 197

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q5E995 RPS6 "40S ribosomal protein S6" [Bos taurus (taxid:9913)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 108/196 (55%), Positives = 124/196 (63%)

Query:     2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNL 61
             GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNL
Sbjct:    54 GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNL 111

Query:    62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
             VIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    K GKK
Sbjct:   112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLN-KDGKK 168

Query:   122 V-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESL 180
               +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +
Sbjct:   169 PRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228

Query:   181 AKKRSRLSAASKPSTA 196
             AK+R RLS+  + ST+
Sbjct:   229 AKRR-RLSSL-RASTS 242

GO:0042593 "glucose homeostasis" evidence=ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2RP05 RPS6 "40S ribosomal protein S6" [Canis lupus familiaris (taxid:9615)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 108/196 (55%), Positives = 124/196 (63%)

Query:     2 GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNL 61
             GG DKQGFPMKQGVLT GRVRLLL +G  C+                 CIV  +LSVLNL
Sbjct:    54 GGNDKQGFPMKQGVLTHGRVRLLLSKGHSCYRPRRTGERKRKSVRG--CIVDANLSVLNL 111

Query:    62 VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
             VIVKKGE D+PGLTDT  PR  GPKRAS+IRKLFNLSKEDDVR+YV   R+    K GKK
Sbjct:   112 VIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYV--VRKPLN-KEGKK 168

Query:   122 V-SKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESL 180
               +KAPKIQRLVTP  L                      EY KLLA R+KE +E+R E +
Sbjct:   169 PRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228

Query:   181 AKKRSRLSAASKPSTA 196
             AK+R RLS+  + ST+
Sbjct:   229 AKRR-RLSSL-RASTS 242

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P47838	RS6_CHICK	No assigned EC number	0.6565	0.9696	0.7710	yes	no
P05752	RS6A_SCHPO	No assigned EC number	0.5989	0.9242	0.7656	yes	no
Q54UU3	RS6_DICDI	No assigned EC number	0.5632	0.8636	0.7245	yes	no
P62754	RS6_MOUSE	No assigned EC number	0.6616	0.9696	0.7710	yes	no
P62755	RS6_RAT	No assigned EC number	0.6616	0.9696	0.7710	yes	no
P62753	RS6_HUMAN	No assigned EC number	0.6616	0.9696	0.7710	yes	no
P0CX37	RS6A_YEAST	No assigned EC number	0.5851	0.9242	0.7754	yes	no
P51430	RS62_ARATH	No assigned EC number	0.8984	0.9898	0.7871	yes	no
Q9NEN6	RS6_CAEEL	No assigned EC number	0.5722	0.8535	0.6869	yes	no
Q6FJH3	RS6_CANGA	No assigned EC number	0.5638	0.9242	0.7754	yes	no
O01727	RS6_BRAFL	No assigned EC number	0.6540	0.8888	0.7213	yes	no
Q74ZK3	RS6_ASHGO	No assigned EC number	0.5372	0.9242	0.7754	yes	no
Q6C169	RS6_YARLI	No assigned EC number	0.6272	0.8232	0.6735	yes	no
Q6BXH8	RS6_DEBHA	No assigned EC number	0.5691	0.9242	0.7754	yes	no
Q9M3V8	RS6_ASPOF	No assigned EC number	0.8989	1.0	0.7888	N/A	no
P29345	RS6_TOBAC	No assigned EC number	0.8527	0.9696	0.9648	N/A	no
O48549	RS61_ARATH	No assigned EC number	0.8883	0.9898	0.784	yes	no
Q6CM04	RS6_KLULA	No assigned EC number	0.5531	0.9242	0.7754	yes	no
Q9C0Z7	RS6B_SCHPO	No assigned EC number	0.5935	0.9242	0.7656	yes	no
P0CX38	RS6B_YEAST	No assigned EC number	0.5851	0.9242	0.7754	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
PTZ00028	218	PTZ00028, PTZ00028, 40S ribosomal protein S6e; Pro	1e-66
pfam01092	127	pfam01092, Ribosomal_S6e, Ribosomal protein S6e	3e-34
COG2125	120	COG2125, RPS6A, Ribosomal protein S6E (S10) [Trans	4e-27
PRK04290	115	PRK04290, PRK04290, 30S ribosomal protein S6e; Val	2e-16
pfam10186	307	pfam10186, Atg14, UV radiation resistance protein	0.004

>gnl|CDD|185404 PTZ00028, PTZ00028, 40S ribosomal protein S6e; Provisional

 Score =  203 bits (517), Expect = 1e-66
 Identities = 108/172 (62%), Positives = 124/172 (72%), Gaps = 7/172 (4%)

Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
           GG DKQGFPM QGVLT  RVRLL  +G  C+R   RR GE +RKSVRGCIV  DLSVLNL
Sbjct: 54  GGNDKQGFPMMQGVLTNNRVRLLFRKGMKCYRP--RRTGEMKRKSVRGCIVGHDLSVLNL 111

Query: 62  VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
           V+VKKG  ++PGLTD E+PR  GPKRASKIRKLFNLSK DDVRK+V   RR      GK 
Sbjct: 112 VLVKKGPQEIPGLTDGERPRRLGPKRASKIRKLFNLSKSDDVRKFV--VRRKI---EGKN 166

Query: 122 VSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQR 173
            +KAPKIQRLVTP  LQRKR      K+++ +++ EA EYQKLL     E+R
Sbjct: 167 KTKAPKIQRLVTPQRLQRKRRYRKTLKKKVLQSREEAKEYQKLLEEYKNEKR 218

Length = 218

>gnl|CDD|110116 pfam01092, Ribosomal_S6e, Ribosomal protein S6e

 Score =  117 bits (296), Expect = 3e-34
 Identities = 60/76 (78%), Positives = 64/76 (84%), Gaps = 2/76 (2%)

Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
           GG DKQGFPMKQGVL P RVRLLL +G  C+R   RRDGER+RKSVRGCIV PDLSVLNL
Sbjct: 54  GGNDKQGFPMKQGVLGPTRVRLLLSKGHSCYRP--RRDGERKRKSVRGCIVDPDLSVLNL 111

Query: 62  VIVKKGEHDLPGLTDT 77
           VIVKKGE D+PGLTD 
Sbjct: 112 VIVKKGEKDIPGLTDD 127

Length = 127

>gnl|CDD|225036 COG2125, RPS6A, Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]

 Score = 99.3 bits (248), Expect = 4e-27
 Identities = 39/67 (58%), Positives = 48/67 (71%), Gaps = 3/67 (4%)

Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
           GG DK GFPM+  V  P RVR+LL  G P +R   RR GER+RK+VRG I+SPD+  +NL
Sbjct: 55  GGSDKDGFPMRPDVPGPRRVRILL-SGGPGYRP--RRKGERKRKTVRGNIISPDIVQINL 111

Query: 62  VIVKKGE 68
           VIV+ GE
Sbjct: 112 VIVEYGE 118

Length = 120

>gnl|CDD|235271 PRK04290, PRK04290, 30S ribosomal protein S6e; Validated

 Score = 71.4 bits (176), Expect = 2e-16
 Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 3/64 (4%)

Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNL 61
           GG DK GFPM+  V  P R R+LL  G P FR   +  GERRRK+VRG  +S D+  +N 
Sbjct: 54  GGSDKSGFPMRPDVPGPVRRRILL-SGGPGFRP--KEKGERRRKTVRGNTISDDIVQINA 110

Query: 62  VIVK 65
            +V+
Sbjct: 111 KVVE 114

Length = 115

>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and autophagy-related subunit 14

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 133 TPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLSAAS 191
             L     +  +A KK+R+ + +A  ++ ++ +  + +E+ E    +LA++RS LS+AS
Sbjct: 55  GKLAADLLKLEVARKKERLNQIRARISQLKEEIE-QKRERIEELKRALAQRRSDLSSAS 112

The Atg14 or Apg14 proteins are hydrophilic proteins with a predicted molecular mass of 40.5 kDa, and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole. Subcellular fractionation indicate that Apg14p and Apg6p are peripherally associated with a membrane structure(s). Apg14p was co-immunoprecipitated with Apg6p, suggesting that they form a stable protein complex. These results imply that Apg6/Vps30p has two distinct functions: in the autophagic process and in the vacuolar protein sorting pathway. Apg14p may be a component specifically required for the function of Apg6/Vps30p through the autophagic pathway. There are 17 auto-phagosomal component proteins which are categorized into six functional units, one of which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The AS-PI3K complex and the Atg2-Atg18 complex are essential for nucleation, and the specific function of the AS-PI3K apparently is to produce phosphatidylinositol 3-phosphate (PtdIns(3)P) at the pre-autophagosomal structure (PAS). The localisation of this complex at the PAS is controlled by Atg14. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. This effect seems to be mediated through direct interaction of the human Atg14 with Beclin 1 in the human phosphatidylinositol 3-kinase class III complex. Length = 307

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG1646	237	consensus 40S ribosomal protein S6 [Translation, r	100.0
PTZ00028	218	40S ribosomal protein S6e; Provisional	100.0
PF01092	127	Ribosomal_S6e: Ribosomal protein S6e; InterPro: IP	100.0
PRK04290	115	30S ribosomal protein S6e; Validated	99.97
COG2125	120	RPS6A Ribosomal protein S6E (S10) [Translation, ri	99.96

>KOG1646 consensus 40S ribosomal protein S6 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.2e-86  Score=563.63  Aligned_cols=183  Identities=70%  Similarity=1.021  Sum_probs=178.5

Q ss_pred             CCCCCCCCCCcCCCCCCCCeEEEeecCCCccccCCCCCCCcceeeeecceeecCCcceEEEEEEeeCCcCCCCCCCCCCC
Q 029147            1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKP   80 (198)
Q Consensus         1 tGGnDkqGFPMkqgVl~~gRv~lLLskG~s~yrg~prr~GeRkRKSVRGciV~~~is~LNlvIvkkGek~I~gLTd~~~p   80 (198)
                      |||||+|||||+|||||++||++||++||||||  |||+|||+||||||||||+|+|+||||||++||+|||||||+++|
T Consensus        53 ~GGndkQGFPMkqGvLt~~RvrlLL~kg~scyR--pRr~GeRkRKSVRGcIV~anlsvLnLvIvKkGekdipGLTdt~~P  130 (237)
T KOG1646|consen   53 TGGNDKQGFPMKQGVLTPGRVRLLLSKGHSCYR--PRRTGERKRKSVRGCIVSANLSVLNLVIVKKGEKDIPGLTDTTVP  130 (237)
T ss_pred             cCCccccCCcccccccccchhhhhhhcCccccc--cccccccccccccceeecccceeeeeeEeccCcccCCCccccccc
Confidence            799999999999999999999999999999999  999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCchhhHHHHhCCCCcchHhHhhhhhhcccc-ccCCcccccCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029147           81 RMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFT-TKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAA  159 (198)
Q Consensus        81 ~~lgPKRaskIrKlFnLsk~ddV~kyV~~~irr~~-k~~kk~~~KaPKIQrLvTp~~lqrK~~~~a~kk~~~~k~keeaa  159 (198)
                      ++|||||||+||||||||+||||++||   ||+++ ++|++|+||||||||||||.+||||+++||+|++++++++|+||
T Consensus       131 ~rlGPkRaskIrKlfnLskEddvr~~v---ir~~~~~~~~k~~tkaPKIqrlvtp~~lqrk~~~~alkk~~~~k~re~aa  207 (237)
T KOG1646|consen  131 RRLGPKRASKIRKLFNLSKEDDVRQYV---IRRPLTKEGKKPKTKAPKIQRLVTPRRLQRKRQRIALKKKQIKKNREEAA  207 (237)
T ss_pred             cccCchhhHHHHHHhCCCccccceeeE---EeccccccCCCccccCcchhhccchHHHHhhhhHHHHHHHHHHHhHHHHH
Confidence            999999999999999999999999999   99999 89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhhhhh
Q 029147          160 EYQKLLATRLKEQRERRSESLAKKRSRLS  188 (198)
Q Consensus       160 eY~kllakr~ke~k~~~~~~~~~~~~s~~  188 (198)
                      ||++||++|++|+++++.++.+++.+|++
T Consensus       208 ey~kLLakr~kE~k~kr~e~~~rr~ss~~  236 (237)
T KOG1646|consen  208 EYAKLLAKRLKEAKEKRFEVKRRRASSLR  236 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            99999999999999999887777776654

>PTZ00028 40S ribosomal protein S6e; Provisional

Probab=100.00  E-value=3.9e-78  Score=517.27  Aligned_cols=165  Identities=64%  Similarity=0.956  Sum_probs=161.2

Q ss_pred             CCCCCCCCCCcCCCCCCCCeEEEeecCCCccccCCCCCCCcceeeeecceeecCCcceEEEEEEeeCCcCCCCCCCCCCC
Q 029147            1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKP   80 (198)
Q Consensus         1 tGGnDkqGFPMkqgVl~~gRv~lLLskG~s~yrg~prr~GeRkRKSVRGciV~~~is~LNlvIvkkGek~I~gLTd~~~p   80 (198)
                      |||||+|||||+|||+|++||+|||++||+|||  |+++|||+||||||||||+||||||++||++||++||||||+++|
T Consensus        53 TGGsDkqGfPMkqgV~~~~RvrlLL~kG~~gyr--prr~GeRkRKsVRGciVs~dis~lNlvIvk~Ge~~i~gLtd~~~p  130 (218)
T PTZ00028         53 SGGNDKQGFPMMQGVLTNNRVRLLFRKGMKCYR--PRRTGEMKRKSVRGCIVGHDLSVLNLVLVKKGPQEIPGLTDGERP  130 (218)
T ss_pred             ecccCCCCcccCCCccCCceEEEEecCCCCCCC--cCCCCcceeeeeeeeeecCCceEEEEEEEecCCccChhhccCcCC
Confidence            799999999999999999999999999999999  999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCchhhHHHHhCCCCcchHhHhhhhhhccccccCCcccccCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029147           81 RMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAE  160 (198)
Q Consensus        81 ~~lgPKRaskIrKlFnLsk~ddV~kyV~~~irr~~k~~kk~~~KaPKIQrLvTp~~lqrK~~~~a~kk~~~~k~keeaae  160 (198)
                      ++|||||||+||||||||++|||++||   |++++ +|+++ +|||||||||||.+||||++++++|+++..+++++++|
T Consensus       131 rrlgPkraskirklfnlsk~ddvrk~v---irr~~-~gkk~-~KapKIQRLiTp~~lqrKr~~~~~k~~r~~~~k~~~~e  205 (218)
T PTZ00028        131 RRLGPKRASKIRKLFNLSKSDDVRKFV---VRRKI-EGKNK-TKAPKIQRLVTPQRLQRKRRYRKTLKKKVLQSREEAKE  205 (218)
T ss_pred             ccCCCcchhhhHHHhCCCccCChhhce---ecccc-CCCCC-CcCCceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999   99999 67654 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 029147          161 YQKLLATRLKEQ  172 (198)
Q Consensus       161 Y~kllakr~ke~  172 (198)
                      |++||++|++|.
T Consensus       206 y~kll~~~~~e~  217 (218)
T PTZ00028        206 YQKLLEEYKNEK  217 (218)
T ss_pred             HHHHHHHHHhhc
Confidence            999999998874

>PF01092 Ribosomal_S6e: Ribosomal protein S6e; InterPro: IPR001377 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=4.7e-37  Score=245.85  Aligned_cols=75  Identities=73%  Similarity=1.184  Sum_probs=56.4

Q ss_pred             CCCCCCCCCCcCCCCCCCCeEEEeecCCCccccCCCCCCCcceeeeecceeecCCcceEEEEEEeeCCcCCCCCCCC
Q 029147            1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDT   77 (198)
Q Consensus         1 tGGnDkqGFPMkqgVl~~gRv~lLLskG~s~yrg~prr~GeRkRKSVRGciV~~~is~LNlvIvkkGek~I~gLTd~   77 (198)
                      |||||+|||||+|||++++||++||++|++|||  |+++||||||||||||||+||||||++||++||++||||||+
T Consensus        53 tGGsD~~GfPMr~~v~~~~rvr~Ll~~G~~gyr--p~r~GeRrRKsVRG~~is~di~qiN~~Iv~~G~k~i~glt~~  127 (127)
T PF01092_consen   53 TGGSDKQGFPMRQGVLGPGRVRLLLSKGGPGYR--PRRKGERRRKSVRGNIISADISQINLVIVKKGEKPIPGLTDT  127 (127)
T ss_dssp             EEEEECCC-BB-TT---SSEEEEEE-TTBTTB----SSTT--EEEEEE-SC--TTEEEEEEEEEE--SS--HHHHT-
T ss_pred             ecccCCCCceeecCCCCcceEEEEEeCCCcccc--cCcCCeEeeeeeeccEecCCeeeEEEEEEEecCccCccccCC
Confidence            699999999999999999999999999999999  999999999999999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins have been grouped on the basis of sequence similarities. Ribosomal protein S6 is the major substrate of protein kinases in eukaryotic ribosomes [] and may play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZM_Y 2XZN_Y 3U5C_G 3U5G_G 3J16_C.

>PRK04290 30S ribosomal protein S6e; Validated

Probab=99.97  E-value=1.8e-31  Score=210.87  Aligned_cols=63  Identities=49%  Similarity=0.827  Sum_probs=61.4

Q ss_pred             CCCCCCCCCCcCCCCCCCCeEEEeecCCCccccCCCCCCCcceeeeecceeecCCcceEEEEEEee
Q 029147            1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKK   66 (198)
Q Consensus         1 tGGnDkqGFPMkqgVl~~gRv~lLLskG~s~yrg~prr~GeRkRKSVRGciV~~~is~LNlvIvkk   66 (198)
                      |||||+|||||+|||++++|++|||++| +||+  |+++||||||||||||||+||+|||++||++
T Consensus        53 tGGsDk~GfPM~~~v~~~~r~rlLl~~g-~gyr--p~r~GeRrRKsVRG~~vs~di~qiN~~iv~~  115 (115)
T PRK04290         53 TGGSDKSGFPMRPDVPGPVRRRILLSGG-PGFR--PKEKGERRRKTVRGNTISDDIVQINAKVVEY  115 (115)
T ss_pred             ecccCCCCccccCCccCCceEEEEecCC-CCCC--cCCCCcEEEEEEEccEEcCCeeEEEEEEEcC
Confidence            7999999999999999999999999999 8999  9999999999999999999999999999974

>COG2125 RPS6A Ribosomal protein S6E (S10) [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=8e-30  Score=202.48  Aligned_cols=67  Identities=57%  Similarity=0.962  Sum_probs=64.9

Q ss_pred             CCCCCCCCCCcCCCCCCCCeEEEeecCCCccccCCCCCCCcceeeeecceeecCCcceEEEEEEeeCCcC
Q 029147            1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHD   70 (198)
Q Consensus         1 tGGnDkqGFPMkqgVl~~gRv~lLLskG~s~yrg~prr~GeRkRKSVRGciV~~~is~LNlvIvkkGek~   70 (198)
                      |||||++||||++||++++|+++||++ ++|||  |+++|||||||||||||++||+|||++||++||++
T Consensus        54 tGGsD~~GfPMr~dv~g~~r~riLls~-~~Gyr--P~~~GeRrRKtVRG~~Is~dI~QiN~~Iv~~ge~~  120 (120)
T COG2125          54 TGGSDKDGFPMRPDVPGPRRVRILLSG-GPGYR--PRRKGERKRKTVRGNIISPDIVQINLVIVEYGEKP  120 (120)
T ss_pred             eCCcCCCCCcccCCCCCcceEEEEecc-CCCcC--CCCCCceeeeeecccccchhheeeEEEEEecCCCC
Confidence            799999999999999999999999997 58999  99999999999999999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
3u5c_G	236	The Structure Of The Eukaryotic Ribosome At 3.0 A R		2e-34
2xzm_Y	293	Crystal Structure Of The Eukaryotic 40s Ribosomal S		8e-30
3zey_3	250	High-resolution Cryo-electron Microscopy Structure		3e-29

>pdb|3U5C|G Chain G, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 236

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/188 (47%), Positives = 106/188 (56%), Gaps = 5/188 (2%)
Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNL 61
           GG DKQGFPMKQGVL P R++LLL +   C+                  IV PDL+VL L
Sbjct: 54  GGNDKQGFPMKQGVLLPTRIKLLLTKNVSCYRPRRDGERKRKSVRG--AIVGPDLAVLAL 111
Query: 62  VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
           VIVKKGE +L GLTDT  P+  GPKRA+ IRK F LSKEDDVR +V   RR   TK  K 
Sbjct: 112 VIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFV--IRRE-VTKGEKT 168
Query: 122 VSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQRERRSESLA 181
            +KAPKIQRLVTP  L                      EY +LLA RL E++  ++E   
Sbjct: 169 YTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRK 228
Query: 182 KKRSRLSA 189
           ++ S L A
Sbjct: 229 RRASSLKA 236

>pdb|2XZM|Y Chain Y, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 293

Iteration: 1
 Score =  126 bits (316), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 79/175 (45%), Positives = 93/175 (53%), Gaps = 8/175 (4%)
Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNL 61
           GG DK GFPMKQGV+  GRVRLLL  G  CF                 CIV PD+ VL L
Sbjct: 54  GGNDKDGFPMKQGVMVRGRVRLLLSEGHSCFTSRRSGFRKRKSVRG--CIVGPDMRVLAL 111
Query: 62  VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDD---VRKYVNTYRRTFTTKT 118
            IVKKG  ++ GLT    PR  GPKRA+ I+KLF L KEDD   ++K V   RRTF T  
Sbjct: 112 QIVKKGVAEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSV--IRRTFKTAK 169
Query: 119 GKKVSKAPKIQRLVTPLTLXXXXXXXXXXXXXXXXXXXXXXEYQKLLATRLKEQR 173
           GK  +K PKIQRL+TP  +                      EY+K L +  K+QR
Sbjct: 170 GKDRTKCPKIQRLITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFL-SEWKKQR 223

>pdb|3ZEY|3 Chain 3, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 250

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 80/132 (60%), Gaps = 2/132 (1%)
Query: 2   GGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNL 61
           GG DK+GFPM QGV+ P RV LL+ RG   F                 CI+  D++VLN+
Sbjct: 55  GGSDKEGFPMVQGVMAPSRVSLLVKRGAVGFNTFRGYQGERRRKSLRGCILGSDIAVLNV 114
Query: 62  VIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKK 121
            + K GE  + G+TD   PR  GPKRA+KIRKLFNL + DDVRKYV   RR  T +  K 
Sbjct: 115 TVEKVGEQPIEGVTDVSVPRRLGPKRANKIRKLFNLGRTDDVRKYV--IRRKVTKEGKKD 172
Query: 122 VSKAPKIQRLVT 133
             KAPKIQRL+T
Sbjct: 173 RFKAPKIQRLIT 184

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
3u5c_G	236	RP9, S10, YS4, 40S ribosomal protein S6-A; transla	5e-58
2xzm_Y	293	RPS6E; ribosome, translation; 3.93A {Tetrahymena t	2e-50
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	5e-04

>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3j16_C 3u5g_G Length = 236

 Score =  181 bits (460), Expect = 5e-58
 Identities = 109/189 (57%), Positives = 130/189 (68%), Gaps = 5/189 (2%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
            GG DKQGFPMKQGVL P R++LLL +   C+R   RRDGER+RKSVRG IV PDL+VL 
Sbjct: 53  SGGNDKQGFPMKQGVLLPTRIKLLLTKNVSCYRP--RRDGERKRKSVRGAIVGPDLAVLA 110

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGK 120
           LVIVKKGE +L GLTDT  P+  GPKRA+ IRK F LSKEDDVR +V    R   TK  K
Sbjct: 111 LVIVKKGEQELEGLTDTTVPKRLGPKRANNIRKFFGLSKEDDVRDFV---IRREVTKGEK 167

Query: 121 KVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESL 180
             +KAPKIQRLVTP  LQRKR + A K +     +  AAEY +LLA RL E++  ++E  
Sbjct: 168 TYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIR 227

Query: 181 AKKRSRLSA 189
            ++ S L A
Sbjct: 228 KRRASSLKA 236

>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Y Length = 293

 Score =  163 bits (414), Expect = 2e-50
 Identities = 96/198 (48%), Positives = 114/198 (57%), Gaps = 3/198 (1%)

Query: 1   MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLN 60
            GG DK GFPMKQGV+  GRVRLLL  G  CF    RR G R+RKSVRGCIV PD+ VL 
Sbjct: 53  AGGNDKDGFPMKQGVMVRGRVRLLLSEGHSCFTS--RRSGFRKRKSVRGCIVGPDMRVLA 110

Query: 61  LVIVKKGEHDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYV-NTYRRTFTTKTG 119
           L IVKKG  ++ GLT    PR  GPKRA+ I+KLF L KEDD      +  RRTF T  G
Sbjct: 111 LQIVKKGVAEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKG 170

Query: 120 KKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSES 179
           K  +K PKIQRL+TP  + RK+   AEK QR  K  A   EY+K L+   K++  +   +
Sbjct: 171 KDRTKCPKIQRLITPERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAA 230

Query: 180 LAKKRSRLSAASKPSTAA 197
            A           P    
Sbjct: 231 SAPVVEAPKKVEAPKKVD 248

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 138 QRKRARIAEKKQRIAKAKAEAAEYQKLLATRLKEQRERRSESLAKKRSRLSAASK 192
           + +R R+ E        + E  E  K     L+E  +R+SE + K +     A K
Sbjct: 92  EEQRKRLQELDAASKVMEQEWREKAK---KDLEEWNQRQSEQVEKNKINNRIADK 143

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
3u5c_G	236	RP9, S10, YS4, 40S ribosomal protein S6-A; transla	100.0
2xzm_Y	293	RPS6E; ribosome, translation; 3.93A {Tetrahymena t	100.0
3j20_G	125	30S ribosomal protein S6E; archaea, archaeal, KINK	99.97

>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3j16_C 3u5g_G

Probab=100.00  E-value=4.5e-88  Score=582.89  Aligned_cols=183  Identities=59%  Similarity=0.885  Sum_probs=172.4

Q ss_pred             CCCCCCCCCCcCCCCCCCCeEEEeecCCCccccCCCCCCCcceeeeecceeecCCcceEEEEEEeeCCcCCCCCCCCCCC
Q 029147            1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKP   80 (198)
Q Consensus         1 tGGnDkqGFPMkqgVl~~gRv~lLLskG~s~yrg~prr~GeRkRKSVRGciV~~~is~LNlvIvkkGek~I~gLTd~~~p   80 (198)
                      |||||+|||||+|||+|++||+||||+||||||  |+++|||+||||||||||+||||||++||++||+|||||||+++|
T Consensus        53 tGGnDkqGFPMkqgVl~~~rvrlLLskG~~~yr--prr~GERkRKsVRGciV~~~is~lNlvIVkkGek~IpgLtd~~~p  130 (236)
T 3u5c_G           53 SGGNDKQGFPMKQGVLLPTRIKLLLTKNVSCYR--PRRDGERKRKSVRGAIVGPDLAVLALVIVKKGEQELEGLTDTTVP  130 (236)
T ss_dssp             EEEEEGGGCBBCTTCCCSSEEEEEECSSBTTBC--CSSTTCCEEEEEECSBCCTTEEEEEEEEEECCSSCCHHHHTCCCC
T ss_pred             ecccCCCCccccCCcCCCceEEEEecCCCCccC--CCCCCceeeeeeeeeEecCCceeEEEEEEecCCccCccccCcccc
Confidence            699999999999999999999999999999999  999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCchhhHHHHhCCCCcchHhHhhhhhhccccccCCcccccCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029147           81 RMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKAEAAE  160 (198)
Q Consensus        81 ~~lgPKRaskIrKlFnLsk~ddV~kyV~~~irr~~k~~kk~~~KaPKIQrLvTp~~lqrK~~~~a~kk~~~~k~keeaae  160 (198)
                      ++|||||||+|||||||||+|||++||   |+++|.+|+|+++|||||||||||++||||++++|+|++++++++|||+|
T Consensus       131 ~~lgPKRas~irklfnlsk~ddVr~yv---vrr~l~~gkk~~~kapKIQrlvtp~~lqrk~~~~a~kk~r~~k~keea~e  207 (236)
T 3u5c_G          131 KRLGPKRANNIRKFFGLSKEDDVRDFV---IRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAE  207 (236)
T ss_dssp             CSCCCCBHHHHHHHHTCTTTSCSSSSS---CCEEEECSSCEEEECCCCBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCchhhhhHHHhCCCcccchhhee---eeeecccCCCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999   99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhhhhh
Q 029147          161 YQKLLATRLKEQRERRSESLAKKRSRLS  188 (198)
Q Consensus       161 Y~kllakr~ke~k~~~~~~~~~~~~s~~  188 (198)
                      |++|||+||+|+++++++..+++++|++
T Consensus       208 Y~klla~r~ke~k~~~~~~~~~r~~~~~  235 (236)
T 3u5c_G          208 YAQLLAKRLSERKAEKAEIRKRRASSLK  235 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999886666666653

>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Y

Probab=100.00  E-value=1.1e-80  Score=548.69  Aligned_cols=173  Identities=54%  Similarity=0.841  Sum_probs=170.5

Q ss_pred             CCCCCCCCCCcCCCCCCCCeEEEeecCCCccccCCCCCCCcceeeeecceeecCCcceEEEEEEeeCCcCCCCCCCCCCC
Q 029147            1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIVKKGEHDLPGLTDTEKP   80 (198)
Q Consensus         1 tGGnDkqGFPMkqgVl~~gRv~lLLskG~s~yrg~prr~GeRkRKSVRGciV~~~is~LNlvIvkkGek~I~gLTd~~~p   80 (198)
                      |||||+|||||+|||+|++||+|||++||+|||  |+++|||+||||||||||+|||||||+||++||+|||||||+++|
T Consensus        53 TGGnDkqGFPMkqgVl~~~RvrLLLskG~sgYR--Prr~GERKRKSVRGciVs~disqLNlvIVkkGek~IpgLTD~~~P  130 (293)
T 2xzm_Y           53 AGGNDKDGFPMKQGVMVRGRVRLLLSEGHSCFT--SRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAEIDGLTTVTLP  130 (293)
T ss_dssp             EEEEETTSCBBCTTCCCSSEEEEEECTTCSSCC--CSSSCCCEEEEEECSSCCTTEEEEEEEEEECCSSCCHHHHTCCCC
T ss_pred             ecccCCCCccccCCccCCceEEEEecCCCCCCC--CCCCCceeeeeeeeeeecCCceeEEEEEEecCCccCccccCCcCC
Confidence            699999999999999999999999999999999  999999999999999999999999999999999999999999999


Q ss_pred             CcCCCCchhhHHHHhCCCCcch---HhHhhhhhhcccc-ccCCcccccCCCcccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 029147           81 RMRGPKRASKIRKLFNLSKEDD---VRKYVNTYRRTFT-TKTGKKVSKAPKIQRLVTPLTLQRKRARIAEKKQRIAKAKA  156 (198)
Q Consensus        81 ~~lgPKRaskIrKlFnLsk~dd---V~kyV~~~irr~~-k~~kk~~~KaPKIQrLvTp~~lqrK~~~~a~kk~~~~k~ke  156 (198)
                      ++|||||||+||||||||++||   ||+||   |++++ ++|+|+++|+|||||||||.+||||++++++|++++++++|
T Consensus       131 rrlGPKRAskIRKlFnLsKeDD~~~VrkyV---irr~~~kegkk~~~KaPKIQRLVTp~~lqrKr~~~a~Kk~r~~k~ke  207 (293)
T 2xzm_Y          131 RKLGPKRANNIKKLFGLKKEDDPILIKKSV---IRRTFKTAKGKDRTKCPKIQRLITPERILRKKVYKAEKTQRYVKTNA  207 (293)
T ss_dssp             CCCCCCSHHHHHHHHCCCTTCCHHHHHHTS---CCEEEECTTSCEEEECCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCchhhhhHHHhCCCcccchhhhhhhh---eeccccccCCcccccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999   99999   99999 89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHH
Q 029147          157 EAAEYQKLLATRLKEQRERRSE  178 (198)
Q Consensus       157 eaaeY~kllakr~ke~k~~~~~  178 (198)
                      |++||++||++|++|+++++++
T Consensus       208 ea~eY~klla~r~~e~k~~~~~  229 (293)
T 2xzm_Y          208 AKEEYEKFLSEWKKQRAAKAHA  229 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999998755

>3j20_G 30S ribosomal protein S6E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.97  E-value=8.9e-33  Score=219.81  Aligned_cols=61  Identities=49%  Similarity=0.943  Sum_probs=60.1

Q ss_pred             CCCCCCCCCCcCCCCCCCCeEEEeecCCCccccCCCCCCCcceeeeecceeecCCcceEEEEEE
Q 029147            1 MGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSPDLSVLNLVIV   64 (198)
Q Consensus         1 tGGnDkqGFPMkqgVl~~gRv~lLLskG~s~yrg~prr~GeRkRKSVRGciV~~~is~LNlvIv   64 (198)
                      |||||+|||||+|||+|++||+|||++| +|||  |+++||||||||||||||+||||||++||
T Consensus        64 tGG~DkqGFPMkqgV~~~~rvrlLLskG-~gyr--prr~GeRkRKsVRG~~V~~~i~~lNlviv  124 (125)
T 3j20_G           64 RGGTDKDGFPMRPDIHGPRRVRVLLSKG-PGFR--PKEKGERRKKTVRGNTISPEIVQVNVKLV  124 (125)
T ss_dssp             EEEEETTCCBBCTTCCSSSEEEEECCSS-CSSC--CCCSSCCCEEEEECSSCCTTEEEEEEEEC
T ss_pred             ccCcCCCCccccCCcCCCceEEEEecCC-CccC--CCCCCcEeeEEeeceEEcCCeEEEEEEEe
Confidence            6999999999999999999999999999 9999  99999999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00