Citrus Sinensis ID: 029164


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
MMHPVDTVKTRIQSQAILSGSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPNFLCILVIF
ccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHcccccccccccHHHHHHHHHHHHccccccccHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHcc
ccccHHHHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccHHccccccccccccccccccccHHHHHHHHHHHHcccHHHHccHHHHHHcccEHHHHHHHHHHHHHHHHcccEEEEEEc
MMHPVDTVKTRIQSQAILSGSQNQKSISQMVRSVWAAdglrgfyrgvtpgvtgslatgaTYFGFIESTKKWieeshpslgghwAHFIAGAvgdtlgsfvyvpCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPNFLCILVIF
MMHPVDTVKTriqsqailsgsqnqksISQMVRSVWAADGLRGFYRGVTPGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPNFLCILVIF
MMHPVDTVKTRIQSQAILSGSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPNFLCILVIF
*****************************MVRSVWAADGLRGFYRGVTPGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPNFLCILVI*
MMHPVDTVKTRI*S************ISQMVRSVWAADGLRGFYRGVTPGVTGSLATGATYFGFIESTKKWI******LGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGT***********NI*VKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPNFLCILVIF
*********TRIQSQAIL**********QMVRSVWAADGLRGFYRGVTPGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPNFLCILVIF
MMHPVDTVKTRIQSQAILSGSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGT*********************YGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPNFLCILVIF
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHi
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
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MMHPVDTVKTRIQSQAILSGSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCYFCCLILYFPNFLCILVIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query198 2.2.26 [Sep-21-2011]
Q03829 368 Uncharacterized mitochond yes no 0.803 0.432 0.362 6e-22
Q55E45303 Mitochondrial substrate c yes no 0.792 0.518 0.325 7e-20
Q76PC3 338 Uncharacterized mitochond yes no 0.828 0.485 0.318 1e-17
Q55DY8 308 Mitoferrin OS=Dictyosteli no no 0.747 0.480 0.311 9e-15
Q4V9P0267 S-adenosylmethionine mito yes no 0.666 0.494 0.300 3e-14
Q6GLA2269 S-adenosylmethionine mito yes no 0.666 0.490 0.298 2e-13
Q641C8266 S-adenosylmethionine mito N/A no 0.666 0.496 0.304 3e-13
Q4WQC5 320 Solute carrier family 25 no no 0.762 0.471 0.251 7e-13
B0Y4J4 320 Solute carrier family 25 N/A no 0.762 0.471 0.251 7e-13
A1CWA4 331 Solute carrier family 25 N/A no 0.777 0.465 0.252 7e-13
>sp|Q03829|YM39_YEAST Uncharacterized mitochondrial carrier YMR166C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR166C PE=1 SV=1 Back     alignment and function desciption
 Score =  103 bits (258), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 26/185 (14%)

Query: 2   MHPVDTVKTRIQSQAILSGSQNQKSISQMV---RSVWAADGLR-GFYRGVTPGVTGSLAT 57
           MH +DTVKTR Q      G+ N K    M+   R++W  +G+R G Y G    + GS  +
Sbjct: 71  MHSLDTVKTRQQ------GAPNVKKYRNMISAYRTIWLEEGVRRGLYGGYMAAMLGSFPS 124

Query: 58  GATYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIK 117
            A +FG  E TK+ + E    +     H  AG +GD + SFVYVP EV+K R+Q+QG   
Sbjct: 125 AAIFFGTYEYTKRTMIEDW-QINDTITHLSAGFLGDFISSFVYVPSEVLKTRLQLQGRF- 182

Query: 118 SWGSILMKDNICVKSNLQMYGY-YTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGL 176
                   +N   +S     GY Y+ +  A  ++ +E+G R L+ GY +TLARD+PF+ L
Sbjct: 183 --------NNPFFQS-----GYNYSNLRNAIKTVIKEEGFRSLFFGYKATLARDLPFSAL 229

Query: 177 MVCYF 181
              ++
Sbjct: 230 QFAFY 234





Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|Q55E45|MCFE_DICDI Mitochondrial substrate carrier family protein E OS=Dictyostelium discoideum GN=mcfE PE=3 SV=1 Back     alignment and function description
>sp|Q76PC3|YQ73_SCHPO Uncharacterized mitochondrial carrier C1442.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1442.03 PE=3 SV=1 Back     alignment and function description
>sp|Q55DY8|MFRN_DICDI Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=3 SV=1 Back     alignment and function description
>sp|Q4V9P0|SAMC_DANRE S-adenosylmethionine mitochondrial carrier protein OS=Danio rerio GN=slc25a26 PE=2 SV=1 Back     alignment and function description
>sp|Q6GLA2|SAMC_XENTR S-adenosylmethionine mitochondrial carrier protein OS=Xenopus tropicalis GN=slc25a26 PE=2 SV=1 Back     alignment and function description
>sp|Q641C8|SAMC_XENLA S-adenosylmethionine mitochondrial carrier protein OS=Xenopus laevis GN=slc25a26 PE=2 SV=1 Back     alignment and function description
>sp|Q4WQC5|S2538_ASPFU Solute carrier family 25 member 38 homolog OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_4G12340 PE=3 SV=1 Back     alignment and function description
>sp|B0Y4J4|S2538_ASPFC Solute carrier family 25 member 38 homolog OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=AFUB_069300 PE=3 SV=1 Back     alignment and function description
>sp|A1CWA4|S2538_NEOFI Solute carrier family 25 member 38 homolog OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=NFIA_103940 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
449440848 361 PREDICTED: uncharacterized mitochondrial 0.914 0.501 0.798 4e-84
255547201 356 mitochondrial carrier protein, putative 0.929 0.516 0.794 9e-82
297733876 327 unnamed protein product [Vitis vinifera] 0.651 0.394 0.771 3e-81
297839303 364 hypothetical protein ARALYDRAFT_339621 [ 0.914 0.497 0.755 4e-81
225457221 352 PREDICTED: mitochondrial substrate carri 0.651 0.366 0.771 4e-81
147775372 376 hypothetical protein VITISV_022947 [Viti 0.929 0.489 0.771 5e-81
356508500 360 PREDICTED: uncharacterized mitochondrial 0.914 0.502 0.777 1e-80
357457413 358 Mitochondrial substrate carrier family p 0.914 0.505 0.782 9e-80
219885105 366 unknown [Zea mays] gi|414865510|tpg|DAA4 0.929 0.502 0.722 6e-78
357457383 363 Mitochondrial substrate carrier family p 0.929 0.506 0.761 6e-78
>gi|449440848|ref|XP_004138196.1| PREDICTED: uncharacterized mitochondrial carrier YMR166C-like [Cucumis sativus] gi|449524978|ref|XP_004169498.1| PREDICTED: uncharacterized mitochondrial carrier YMR166C-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  316 bits (809), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 147/184 (79%), Positives = 164/184 (89%)

Query: 1   MMHPVDTVKTRIQSQAILSGSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGAT 60
           MMHP+DT+KTRIQSQAIL GSQNQKS+ QMV+SVW  DGLRGFYRG+ PG+TGSLATGAT
Sbjct: 41  MMHPIDTIKTRIQSQAILYGSQNQKSLLQMVQSVWKIDGLRGFYRGIAPGITGSLATGAT 100

Query: 61  YFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWG 120
           YFG IES+KKWIEE+HPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGT  SW 
Sbjct: 101 YFGVIESSKKWIEETHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTRSSWS 160

Query: 121 SILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCY 180
           S+ MK+NI +    QMYGYY+G++QAG SI +EQGLRGLYAGYWSTLARDVPFAGLMV +
Sbjct: 161 SLPMKNNISMNHGGQMYGYYSGMFQAGRSILKEQGLRGLYAGYWSTLARDVPFAGLMVMF 220

Query: 181 FCCL 184
           +  L
Sbjct: 221 YEAL 224




Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547201|ref|XP_002514658.1| mitochondrial carrier protein, putative [Ricinus communis] gi|223546262|gb|EEF47764.1| mitochondrial carrier protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297733876|emb|CBI15123.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297839303|ref|XP_002887533.1| hypothetical protein ARALYDRAFT_339621 [Arabidopsis lyrata subsp. lyrata] gi|297333374|gb|EFH63792.1| hypothetical protein ARALYDRAFT_339621 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225457221|ref|XP_002280848.1| PREDICTED: mitochondrial substrate carrier family protein X-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147775372|emb|CAN77961.1| hypothetical protein VITISV_022947 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356508500|ref|XP_003522994.1| PREDICTED: uncharacterized mitochondrial carrier C1442.03-like [Glycine max] Back     alignment and taxonomy information
>gi|357457413|ref|XP_003598987.1| Mitochondrial substrate carrier family protein E [Medicago truncatula] gi|355488035|gb|AES69238.1| Mitochondrial substrate carrier family protein E [Medicago truncatula] Back     alignment and taxonomy information
>gi|219885105|gb|ACL52927.1| unknown [Zea mays] gi|414865510|tpg|DAA44067.1| TPA: carrier YMR166C [Zea mays] Back     alignment and taxonomy information
>gi|357457383|ref|XP_003598972.1| Mitochondrial substrate carrier family protein E [Medicago truncatula] gi|355488020|gb|AES69223.1| Mitochondrial substrate carrier family protein E [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query198
TAIR|locus:2019657 364 AT1G74240 "AT1G74240" [Arabido 0.914 0.497 0.751 1.9e-76
SGD|S000004776 368 YMR166C "Predicted transporter 0.803 0.432 0.362 9e-22
DICTYBASE|DDB_G0269394303 mcfE "mitochondrial substrate 0.808 0.528 0.325 4.4e-20
POMBASE|SPCC1442.03 338 SPCC1442.03 "mitochondrial ATP 0.828 0.485 0.324 4.2e-18
TAIR|locus:2122452325 SAMC1 "S-adenosylmethionine ca 0.363 0.221 0.388 1.8e-16
CGD|CAL0005755 366 orf19.4159 [Candida albicans ( 0.818 0.442 0.338 2.8e-16
UNIPROTKB|Q59SL4 366 CaO19.11635 "Potential mitocho 0.818 0.442 0.338 2.8e-16
RGD|621444298 Slc25a21 "solute carrier famil 0.550 0.365 0.353 5.3e-15
UNIPROTKB|Q99JD3298 Slc25a21 "Mitochondrial 2-oxod 0.550 0.365 0.353 5.3e-15
TAIR|locus:2123096628 AT4G11440 [Arabidopsis thalian 0.676 0.213 0.305 8.4e-15
TAIR|locus:2019657 AT1G74240 "AT1G74240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 136/181 (75%), Positives = 160/181 (88%)

Query:     1 MMHPVDTVKTRIQSQAILSGSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGAT 60
             MMHPVDT+KTR+QSQ I++ +Q QKSI QM+R+VW  DGL+GFYRG+ PGVTGSLATGAT
Sbjct:    49 MMHPVDTLKTRLQSQIIMNATQRQKSILQMLRTVWVGDGLKGFYRGIAPGVTGSLATGAT 108

Query:    61 YFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWG 120
             YFGFIESTKKWIEESHPSL GHWAHFIAGAVGDTLGSF+YVPCEV+KQRMQ+QGT  SW 
Sbjct:   109 YFGFIESTKKWIEESHPSLAGHWAHFIAGAVGDTLGSFIYVPCEVIKQRMQIQGTSSSWS 168

Query:   121 SILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCY 180
             S + ++++ V+    MYGYYTG++QAG SIW+EQG +GLYAGYWSTLARDVPFAGLMV +
Sbjct:   169 SYISRNSVPVQPRGDMYGYYTGMFQAGCSIWKEQGPKGLYAGYWSTLARDVPFAGLMVVF 228

Query:   181 F 181
             +
Sbjct:   229 Y 229




GO:0005743 "mitochondrial inner membrane" evidence=ISS
GO:0006810 "transport" evidence=IEA;ISS
GO:0006839 "mitochondrial transport" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
SGD|S000004776 YMR166C "Predicted transporter of the mitochondrial inner membrane" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269394 mcfE "mitochondrial substrate carrier family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPCC1442.03 SPCC1442.03 "mitochondrial ATP-Mg/Pi carrier (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TAIR|locus:2122452 SAMC1 "S-adenosylmethionine carrier 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0005755 orf19.4159 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q59SL4 CaO19.11635 "Potential mitochondrial carrier protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
RGD|621444 Slc25a21 "solute carrier family 25 (mitochondrial oxoadipate carrier), member 21" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q99JD3 Slc25a21 "Mitochondrial 2-oxodicarboxylate carrier" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2123096 AT4G11440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 4e-16
pfam0015396 pfam00153, Mito_carr, Mitochondrial carrier protei 2e-12
PTZ00168259 PTZ00168, PTZ00168, mitochondrial carrier protein; 8e-10
PTZ00169300 PTZ00169, PTZ00169, ADP/ATP transporter on adenyla 2e-06
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
 Score = 70.0 bits (172), Expect = 4e-16
 Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 1  MMHPVDTVKTRIQSQAILSGSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGAT 60
          + +P+D VKTR+QS A   GS+  K I    + ++  +G+RG Y+G+ P +       A 
Sbjct: 22 VTYPLDVVKTRLQSSAA-GGSRKYKGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAI 80

Query: 61 YFGFIESTKKWI 72
          YFG  E+ KK +
Sbjct: 81 YFGTYETLKKLL 92


Length = 96

>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein Back     alignment and domain information
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional Back     alignment and domain information
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 198
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0764299 consensus Mitochondrial FAD carrier protein [Energ 100.0
KOG0752320 consensus Mitochondrial solute carrier protein [En 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
PTZ00169300 ADP/ATP transporter on adenylate translocase; Prov 100.0
KOG0753317 consensus Mitochondrial fatty acid anion carrier p 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 100.0
KOG0758297 consensus Mitochondrial carnitine-acylcarnitine ca 100.0
KOG0757319 consensus Mitochondrial carrier protein - Rim2p/Mr 100.0
KOG0759286 consensus Mitochondrial oxoglutarate/malate carrie 100.0
KOG0762311 consensus Mitochondrial carrier protein [Energy pr 100.0
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 100.0
KOG0762 311 consensus Mitochondrial carrier protein [Energy pr 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
KOG0760302 consensus Mitochondrial carrier protein MRS3/4 [En 100.0
PTZ00168259 mitochondrial carrier protein; Provisional 100.0
KOG0751694 consensus Mitochondrial aspartate/glutamate carrie 100.0
KOG0761 361 consensus Mitochondrial carrier protein CGI-69 [En 99.98
KOG0770 353 consensus Predicted mitochondrial carrier protein 99.98
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 99.97
KOG0754294 consensus Mitochondrial oxodicarboxylate carrier p 99.97
KOG0767 333 consensus Mitochondrial phosphate carrier protein 99.97
KOG0761361 consensus Mitochondrial carrier protein CGI-69 [En 99.97
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.96
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.96
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.96
KOG0769 308 consensus Predicted mitochondrial carrier protein 99.96
KOG0765333 consensus Predicted mitochondrial carrier protein 99.96
KOG0755320 consensus Mitochondrial oxaloacetate carrier prote 99.95
KOG0766297 consensus Predicted mitochondrial carrier protein 99.95
KOG0765333 consensus Predicted mitochondrial carrier protein 99.95
KOG0766297 consensus Predicted mitochondrial carrier protein 99.95
KOG0036463 consensus Predicted mitochondrial carrier protein 99.95
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 99.95
KOG0036463 consensus Predicted mitochondrial carrier protein 99.95
KOG0768323 consensus Mitochondrial carrier protein PET8 [Ener 99.94
KOG0770353 consensus Predicted mitochondrial carrier protein 99.93
KOG0756299 consensus Mitochondrial tricarboxylate/dicarboxyla 99.93
KOG0750304 consensus Mitochondrial solute carrier protein [En 99.93
KOG0769308 consensus Predicted mitochondrial carrier protein 99.92
KOG0749298 consensus Mitochondrial ADP/ATP carrier proteins [ 99.92
KOG0763301 consensus Mitochondrial ornithine transporter [Ene 99.92
KOG0767333 consensus Mitochondrial phosphate carrier protein 99.87
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.83
KOG2745321 consensus Mitochondrial carrier protein [General f 99.67
PF0015395 Mito_carr: Mitochondrial carrier protein; InterPro 99.61
KOG0751 694 consensus Mitochondrial aspartate/glutamate carrie 99.59
KOG1519297 consensus Predicted mitochondrial carrier protein 99.59
KOG2954427 consensus Mitochondrial carrier protein [General f 99.43
KOG2745321 consensus Mitochondrial carrier protein [General f 99.38
KOG1519297 consensus Predicted mitochondrial carrier protein 99.36
KOG2954427 consensus Mitochondrial carrier protein [General f 98.08
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
Probab=100.00  E-value=3.7e-40  Score=246.65  Aligned_cols=173  Identities=29%  Similarity=0.409  Sum_probs=155.2

Q ss_pred             CCCchhHHHHHhhccccc-cCCCCCCCHHHHHHHHHHhhhhhhhccccchhhhhhccchhhHHHHHHHHHHHHHhcCCCC
Q 029164            1 MMHPVDTVKTRIQSQAIL-SGSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGATYFGFIESTKKWIEESHPSL   79 (198)
Q Consensus         1 l~~Pld~iktr~q~~~~~-~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~   79 (198)
                      ++||+|++|+|+|++... +..+.|+++.+++++|+|.||++|||+|++|++++..+.|++||.+||.+|..+.+..+..
T Consensus        22 ~vhPlDl~K~R~qa~~g~~~~~~~y~g~~~~~~tI~r~eG~rGLY~Gl~P~v~G~~~sWgiYF~~Y~~~K~~~~~~~~~~  101 (299)
T KOG0764|consen   22 VVHPLDLVKIRFQASDGRTSLRPAYKGIFGALKTIFRSEGLRGLYRGLSPNVLGSAPSWGLYFFFYDFLKSFITEGFNSG  101 (299)
T ss_pred             hccchhHhhhhhhhccCccccchhhccHHHHHHHHHHhhhHHHHhccCcHHHHhchhhHHHHHHHHHHHHHHHhcCCCcc
Confidence            479999999999998533 4567899999999999999999999999999999999999999999999999997644433


Q ss_pred             -CChHHHHHHHHHHhhhhheeeecHHHHHHHHHhccccccccccccccccccccccccccCCCcHHHHHHHHHHhhchhh
Q 029164           80 -GGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRG  158 (198)
Q Consensus        80 -~~~~~~~~a~~~ag~~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~~~~G~~g  158 (198)
                       .+...++++++.||++..++|+|++++|||++.+......                  ..|++.+|++++|+++||++|
T Consensus       102 ~l~~~~~l~sa~~AGa~t~~lTNPIWVvKTRL~~Q~~~~~~------------------~~Y~~~f~a~rki~k~EG~rg  163 (299)
T KOG0764|consen  102 LLSVLANLSSAAEAGAATTILTNPIWVVKTRLMLQSKNVQS------------------TAYKGMFDALRKIYKEEGFRG  163 (299)
T ss_pred             cchHHHHHHHHHhhhHHHHHhcCCeEEEeehhhhhcccccc------------------cccccHHHHHHHHHHHHhHHH
Confidence             3788999999999999999999999999999999775431                  469999999999999999999


Q ss_pred             hccccchhhccccCchhHHHHHHHHHHHhhhhhh
Q 029164          159 LYAGYWSTLARDVPFAGLMVCYFCCLILYFPNFL  192 (198)
Q Consensus       159 l~rG~~~~~~r~~~~~~i~~~~y~~~~~~~~~~~  192 (198)
                      ||+|+.|.++ .+.+.|++|++||.+|.++.+..
T Consensus       164 LY~GlVP~L~-GvshgAiQF~~YE~lK~~~~~~~  196 (299)
T KOG0764|consen  164 LYKGLVPGLL-GVSHGAIQFPAYEELKLRKNRKQ  196 (299)
T ss_pred             HHhhhhhHhh-hhchhhhhhhhHHHHHHHHHHhc
Confidence            9999999999 56799999999999999996544



>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0764 consensus Mitochondrial FAD carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0752 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>PTZ00169 ADP/ATP transporter on adenylate translocase; Provisional Back     alignment and domain information
>KOG0753 consensus Mitochondrial fatty acid anion carrier protein/Uncoupling protein [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0758 consensus Mitochondrial carnitine-acylcarnitine carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0757 consensus Mitochondrial carrier protein - Rim2p/Mrs12p [Energy production and conversion] Back     alignment and domain information
>KOG0759 consensus Mitochondrial oxoglutarate/malate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0762 consensus Mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>KOG0760 consensus Mitochondrial carrier protein MRS3/4 [Energy production and conversion] Back     alignment and domain information
>PTZ00168 mitochondrial carrier protein; Provisional Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0754 consensus Mitochondrial oxodicarboxylate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0761 consensus Mitochondrial carrier protein CGI-69 [Energy production and conversion] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0755 consensus Mitochondrial oxaloacetate carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0765 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0766 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0768 consensus Mitochondrial carrier protein PET8 [Energy production and conversion] Back     alignment and domain information
>KOG0770 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0756 consensus Mitochondrial tricarboxylate/dicarboxylate carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0750 consensus Mitochondrial solute carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion] Back     alignment and domain information
>KOG0749 consensus Mitochondrial ADP/ATP carrier proteins [Energy production and conversion] Back     alignment and domain information
>KOG0763 consensus Mitochondrial ornithine transporter [Energy production and conversion] Back     alignment and domain information
>KOG0767 consensus Mitochondrial phosphate carrier protein [Energy production and conversion] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ] Back     alignment and domain information
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2745 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG1519 consensus Predicted mitochondrial carrier protein [General function prediction only] Back     alignment and domain information
>KOG2954 consensus Mitochondrial carrier protein [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
1okc_A297 Structure Of Mitochondrial AdpATP CARRIER IN COMPLE 2e-07
2lck_A 303 Structure Of The Mitochondrial Uncoupling Protein 2 1e-06
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH Carboxyatractyloside Length = 297 Back     alignment and structure

Iteration: 1

Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 22/181 (12%) Query: 2 MHPVDTVKTRIQSQAILSGSQNQ-KSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGAT 60 ++P+D +TR+ + +Q + + + ++ +DGLRG Y+G V G + A Sbjct: 130 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAA 189 Query: 61 YFGFIESTKKWI-EESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSW 119 YFG ++ K + + + + W IA V G Y P + +++RM +Q K Sbjct: 190 YFGVYDTAKGMLPDPKNVHIIVSW--MIAQTVTAVAGLVSY-PFDTVRRRMMMQSGRK-- 244 Query: 120 GSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVC 179 G+ +M YTG I +++G + + G WS + R + A ++V Sbjct: 245 GADIM---------------YTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVL 289 Query: 180 Y 180 Y Sbjct: 290 Y 290
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2 Determined By Nmr Molecular Fragment Replacement Length = 303 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query198
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 3e-29
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 6e-25
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 5e-09
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 4e-26
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 1e-23
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 4e-09
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 4e-07
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
 Score =  108 bits (273), Expect = 3e-29
 Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 20/178 (11%)

Query: 4   PVDTVKTRIQSQAILSGSQNQ-KSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGATYF 62
           P+D  +TR+ +      +Q +   +   +  ++ +DGLRG Y+G    V G +   A YF
Sbjct: 132 PLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYF 191

Query: 63  GFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSI 122
           G  ++ K  + +           ++       +   V  P + +++RM +Q   K     
Sbjct: 192 GVYDTAKGMLPDPKNV--HIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADI- 248

Query: 123 LMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVCY 180
                            YTG       I +++G +  + G WS + R +  A ++V Y
Sbjct: 249 ----------------MYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLY 290


>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Length = 297 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Length = 303 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
2lck_A303 Mitochondrial uncoupling protein 2; membrane prote 100.0
2lck_A 303 Mitochondrial uncoupling protein 2; membrane prote 100.0
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
1okc_A297 ADP, ATP carrier protein heart isoform T1; mitocho 100.0
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
Probab=100.00  E-value=9.5e-40  Score=258.01  Aligned_cols=170  Identities=19%  Similarity=0.283  Sum_probs=154.2

Q ss_pred             CCCchhHHHHHhhccccccCCCCCCCHHHHHHHHHHhhhhhhhccccchhhhhhccchhhHHHHHHHHHHHHHhcCCCCC
Q 029164            1 MMHPVDTVKTRIQSQAILSGSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGATYFGFIESTKKWIEESHPSLG   80 (198)
Q Consensus         1 l~~Pld~iktr~q~~~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~   80 (198)
                      +++|+|++|+|+|++........|++.++++++|+++||++|||+|+.|++++.++..+++|.+||.+|+.+.+......
T Consensus       121 ~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~  200 (303)
T 2lck_A          121 VAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTD  200 (303)
T ss_dssp             HSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCS
T ss_pred             HcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            47999999999999864334557899999999999999999999999999999999999999999999998876554455


Q ss_pred             ChHHHHHHHHHHhhhhheeeecHHHHHHHHHhccccccccccccccccccccccccccCCCcHHHHHHHHHHhhchhhhc
Q 029164           81 GHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLY  160 (198)
Q Consensus        81 ~~~~~~~a~~~ag~~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~~~~G~~gl~  160 (198)
                      +.+..+++|++||+++.++++|+|+||+|+|.+...                      .|.++++|+++|+++||++|||
T Consensus       201 ~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~----------------------~y~~~~~~~~~i~~~eG~~gly  258 (303)
T 2lck_A          201 DLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG----------------------QYHSAGHCALTMLRKEGPRAFY  258 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS----------------------SCCSHHHHHHHHHHSSCTHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccc----------------------ccCCHHHHHHHHHHHcChHHhh
Confidence            677889999999999999999999999999997532                      4899999999999999999999


Q ss_pred             cccchhhccccCchhHHHHHHHHHHHhhhhhh
Q 029164          161 AGYWSTLARDVPFAGLMVCYFCCLILYFPNFL  192 (198)
Q Consensus       161 rG~~~~~~r~~~~~~i~~~~y~~~~~~~~~~~  192 (198)
                      ||+.|+++|.+|.++++|.+||.+++.+.+..
T Consensus       259 rG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~  290 (303)
T 2lck_A          259 KGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY  290 (303)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999887654



>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus} Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 198
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 6e-11
d1okca_292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 2e-07
d1okca_ 292 f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos ta 0.003
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]
 Score = 58.2 bits (139), Expect = 6e-11
 Identities = 37/181 (20%), Positives = 73/181 (40%), Gaps = 20/181 (11%)

Query: 1   MMHPVDTVKTRIQSQAILSGSQNQ-KSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGA 59
            ++P+D  +TR+ +      +Q +   +   +  ++ +DGLRG Y+G    V G +   A
Sbjct: 128 FVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRA 187

Query: 60  TYFGFIESTKKWIEESHPSLGGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSW 119
            YFG  ++ K  + +           ++       +   V  P + +++RM +Q   K  
Sbjct: 188 AYFGVYDTAKGMLPDPKNV--HIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGA 245

Query: 120 GSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLYAGYWSTLARDVPFAGLMVC 179
                               YTG       I +++G +  + G WS + R +  A ++V 
Sbjct: 246 DI-----------------MYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVL 288

Query: 180 Y 180
           Y
Sbjct: 289 Y 289


>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Length = 292 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query198
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 100.0
d1okca_292 ADP,ATP carrier protein {Cow (Bos taurus), heart i 99.97
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Mitochondrial carrier
superfamily: Mitochondrial carrier
family: Mitochondrial carrier
domain: ADP,ATP carrier protein
species: Cow (Bos taurus), heart isoform t1 [TaxId: 9913]
Probab=100.00  E-value=8.5e-34  Score=220.57  Aligned_cols=163  Identities=20%  Similarity=0.421  Sum_probs=142.3

Q ss_pred             CCchhHHHHHhhcccccc-CCCCCCCHHHHHHHHHHhhhhhhhccccchhhhhhccchhhHHHHHHHHHHHHHhcCCCCC
Q 029164            2 MHPVDTVKTRIQSQAILS-GSQNQKSISQMVRSVWAADGLRGFYRGVTPGVTGSLATGATYFGFIESTKKWIEESHPSLG   80 (198)
Q Consensus         2 ~~Pld~iktr~q~~~~~~-~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~   80 (198)
                      ++|+|++|+|+|++.... ..+.+.+..+.+++++++||+++||+|+.+.+++.++..+++|++||.+|+.+.+...  .
T Consensus       129 ~~P~~~ik~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~--~  206 (292)
T d1okca_         129 VYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN--V  206 (292)
T ss_dssp             HHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGC--S
T ss_pred             hhhhhhhheeeeccccccccccccccHHHHHHHhhhccchhhhhccccccccceehHhhhhhhhccchhhhcccccc--c
Confidence            579999999999986433 3456789999999999999999999999999999999999999999999987765333  3


Q ss_pred             ChHHHHHHHHHHhhhhheeeecHHHHHHHHHhccccccccccccccccccccccccccCCCcHHHHHHHHHHhhchhhhc
Q 029164           81 GHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQVQGTIKSWGSILMKDNICVKSNLQMYGYYTGIYQAGSSIWREQGLRGLY  160 (198)
Q Consensus        81 ~~~~~~~a~~~ag~~~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~i~~~~G~~gl~  160 (198)
                      .....++++.+++++++++++|+|+||+|+|.+......                 ...|.++++++++++++||++|||
T Consensus       207 ~~~~~~~~~~~~~~~a~~~t~P~dvvktR~q~~~~~~~~-----------------~~~y~~~~~~~~~i~~~eG~~~ly  269 (292)
T d1okca_         207 HIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGA-----------------DIMYTGTVDCWRKIAKDEGPKAFF  269 (292)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGG-----------------GCSCSSHHHHHHHHHHHHCGGGGG
T ss_pred             chHHHHHHHHHHHHHHhhccccHHHHHHHHHhcCCCCCC-----------------CCCCCCHHHHHHHHHHhcCcCccc
Confidence            567889999999999999999999999999998654321                 136899999999999999999999


Q ss_pred             cccchhhccccCchhHHHHHHHHH
Q 029164          161 AGYWSTLARDVPFAGLMVCYFCCL  184 (198)
Q Consensus       161 rG~~~~~~r~~~~~~i~~~~y~~~  184 (198)
                      ||+.|+++|.+| +++.|.+||.+
T Consensus       270 rG~~~~~~r~i~-~~i~~~~ye~l  292 (292)
T d1okca_         270 KGAWSNVLRGMG-GAFVLVLYDEI  292 (292)
T ss_dssp             TTHHHHHHHHHH-HHHHHHHHHTC
T ss_pred             ccHHHHHHHHHH-HHhhhhHhhcC
Confidence            999999999876 58999999963



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]} Back     information, alignment and structure