Citrus Sinensis ID: 029165

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MPRGPTRDKRRTYKSKDQKGFPLSSKDKGIPKHTLEGKSDLSGSSEEEGSEGVVQADFVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDEVR
Secondary Structure (PSIPRED)
ccccccHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHccccccHHHHHHHHHccccccEEEEEccccccccEEEEEEEEcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHcccccHHHHHHHHHccccEEEEEEEccccccccEEEEEEEEcccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mprgptrdkrrtykskdqkgfplsskdkgipkhtlegksdlsgsseeegsegvvqadfvffdpkpddfhGVKILLQTYlddtqwdlsGFVDLILAQTTVGTVvkmegddddtpfSIVTAlnlgrykdhKCIKELKEFLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSqrvvnlppqllpplhdalfdevswatedevr
Flexible Loop (DISEMBL)
mprgptrdkrrtykskdqkgfplsskdkgipkhtlegksdlsgsseEEGSEGVVQADFVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVkmegddddtpFSIVTalnlgrykDHKCIKELKEFLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDEVR
Low Complexity Region (SEG)
MPRGPTRDKRRTYKSKDQKGFPLSSKDKGIPKHTLegksdlsgsseeegsegVVQAdfvffdpkpddfHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNlppqllpplHDALFDEVSWATEDEVR
Disordered region (IsUnstruct)
****************************************************VVQADFVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSW*******
Disordered Region (DISOPRED)
*****************************************************VQADFVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLLKVC***************QAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWA******
Disordered Region (DISEMBL)
***********************SSKDKGIPKHTLEG***************VVQADFVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDEVR
Disordered Region (DISPRO)
**************************************************EGVVQADFVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRGPTRDKRRTYKSKDQKGFPLSSKDKGIPKHTLEGKSDLSGSSEEEGSEGVVQADFVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDEVR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
O64885	326	Protein BCCIP homolog OS=	yes	no	0.853	0.518	0.658	2e-52
Q2U600	290	Protein bcp1 OS=Aspergill	yes	no	0.722	0.493	0.387	2e-24
Q4WVS2	291	Protein bcp1 OS=Neosartor	yes	no	0.722	0.491	0.385	4e-24
O74907	282	Protein bcp1 OS=Schizosac	yes	no	0.823	0.578	0.319	6e-23
Q5AXW5	290	Protein bcp1 OS=Emericell	yes	no	0.813	0.555	0.343	5e-21
Q4HZK7	285	Protein BCP1 OS=Gibberell	yes	no	0.717	0.498	0.333	6e-19
Q6BII5	307	Protein BCP1 OS=Debaryomy	yes	no	0.737	0.475	0.320	8e-19
Q6C7K5	302	Protein BCP1 OS=Yarrowia	yes	no	0.686	0.450	0.347	8e-18
Q59PE7	321	Protein BCP1 OS=Candida a	N/A	no	0.702	0.433	0.331	4e-16
Q2H137	291	Protein BCP1 OS=Chaetomiu	N/A	no	0.717	0.487	0.331	1e-15

>sp|O64885|BCCIP_ARATH Protein BCCIP homolog OS=Arabidopsis thaliana GN=At2g44510 PE=1 SV=2

 Score =  205 bits (521), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 137/170 (80%), Gaps = 1/170 (0%)

Query: 28  KGIPKHTLEGKSD-LSGSSEEEGSEGVVQADFVFFDPKPDDFHGVKILLQTYLDDTQWDL 86
           + IP    +GK + +S SS+EE S+  VQADF FFDPKP DFHGVKILLQ YLDD +WDL
Sbjct: 55  QKIPNLPRKGKEEQVSDSSDEEDSQEDVQADFEFFDPKPTDFHGVKILLQNYLDDKEWDL 114

Query: 87  SGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQEKD 146
           S FVD IL QTTVGTVVK+  D+D++ F++VTALN+ R KD+KC +ELKEFL KVC EK+
Sbjct: 115 SSFVDCILEQTTVGTVVKVADDEDESVFALVTALNMARDKDNKCFRELKEFLRKVCSEKN 174

Query: 147 VIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDE 196
           +  +L +L+ ++A DVGLLVSQRV+NLPPQLLPPL+D LFDEVSWA EDE
Sbjct: 175 IANNLEMLLEKKAQDVGLLVSQRVMNLPPQLLPPLYDGLFDEVSWAIEDE 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q2U600|BCP1_ASPOR Protein bcp1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=bcp1 PE=3 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/147 (38%), Positives = 97/147 (65%), Gaps = 4/147 (2%)

Query: 53  VVQADFVFFDPKPDDFHGVKILLQTYLD-DTQ-WDLSGFVDLILAQTTVGTVVKMEGDDD 110
           +V  DF +FDP+P DFHG+KILL+   D D Q +D+S   D+ILAQ  +G+ VK++G++ 
Sbjct: 32  IVNVDFEWFDPQPIDFHGLKILLRQLFDSDAQIFDMSALSDMILAQPLLGSTVKVDGNES 91

Query: 111 DTPFSIVTALNLGRYKDHKCIKELKEFL-LKVCQEKDVIRDLRLLMGEQAHDVGLLVSQR 169
           D P++ +T LNL  +KD   IK+L  +L  K     D+    +LL       +GL++++R
Sbjct: 92  D-PYAFLTVLNLQEHKDKPVIKDLISYLQRKASSNPDLAPLSQLLSQTPVPPIGLILTER 150

Query: 170 VVNLPPQLLPPLHDALFDEVSWATEDE 196
           ++N+P +++PP++  L +E++WA +D+
Sbjct: 151 LINMPAEVVPPMYTMLMEEIAWAIQDK 177

Involved in nuclear export, actin cytoskeleton organization and vesicular transport.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q4WVS2|BCP1_ASPFU Protein bcp1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=bcp1 PE=3 SV=2

 Score =  111 bits (277), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 57/148 (38%), Positives = 97/148 (65%), Gaps = 5/148 (3%)

Query: 53  VVQADFVFFDPKPD-DFHGVKILLQTYLD-DTQ-WDLSGFVDLILAQTTVGTVVKMEGDD 109
           +V  DF +FDP+P  DFHG+K LL+   D D+Q +DLS   DLILAQ  +G+ VK++G++
Sbjct: 32  IVNVDFEWFDPQPAVDFHGLKNLLRQLFDADSQIFDLSALTDLILAQPLLGSTVKVDGNE 91

Query: 110 DDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQEKDVIRDLRLLMGEQA-HDVGLLVSQ 168
            D P++ +T LNL  +KD   IK+L  +L +       +  L  L+ +     +GL++++
Sbjct: 92  SD-PYAFLTVLNLQEHKDKPVIKDLTSYLQRKASSNPSLAPLSQLLSQSPIPPIGLILTE 150

Query: 169 RVVNLPPQLLPPLHDALFDEVSWATEDE 196
           R++N+P +++PP++  L +E++WA ED+
Sbjct: 151 RLINMPAEVVPPMYSMLLEEIAWAIEDK 178

Involved in nuclear export, actin cytoskeleton organization and vesicular transport.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|O74907|BCP1_SCHPO Protein bcp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bcp1 PE=3 SV=2

 Score =  107 bits (267), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 100/169 (59%), Gaps = 6/169 (3%)

Query: 32  KHTLEGKSDLSGSSEEEGSEGVVQADFVFFDPKPDDFHGVKILLQTYL--DDTQWDLSGF 89
           +H  E +  +   S +      +  DF FFDP+P DFH  K LL+  L  D T  +LS  
Sbjct: 4   RHAEENEDTVMSESLKVVDTDFINVDFEFFDPQPIDFHAFKNLLKQLLGYDHTNVNLSAL 63

Query: 90  VDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLL-KVCQEKDVI 148
            DLIL+Q  +G+ VK++G++ D P+++++ +NL   +D   IK+L  +++ ++ +    +
Sbjct: 64  ADLILSQPLLGSTVKVDGNNSD-PYAMLSVINLNTRRDEPVIKQLTSYIISRLAKSNSRL 122

Query: 149 RD--LRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATED 195
            +   +LL       VGL+V++R++N+P Q++PP+++ L +E+ WA  +
Sbjct: 123 ENELQKLLEPNSGSQVGLIVNERLINMPVQVIPPMYNMLLEEMQWAINE 171

Involved in nuclear export, actin cytoskeleton organization and vesicular transport.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5AXW5|BCP1_EMENI Protein bcp1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=bcp1 PE=3 SV=1

 Score =  100 bits (250), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 99/166 (59%), Gaps = 5/166 (3%)

Query: 34  TLEGKSDLSGSSEEEGSEGVVQADFVFFDPKPDDFHGVKILLQTYLD-DTQ-WDLSGFVD 91
           ++ G    +G S +E  + +V  DF +FDP+  DFHG+K L++   D D Q  DLSG  D
Sbjct: 13  SMGGTDPATGDSSDEDID-MVNVDFEWFDPQEIDFHGIKHLIRQLFDVDAQDLDLSGLTD 71

Query: 92  LILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQEKDVIRDL 151
           +ILAQ  +G+ VK +G D D P++ +T LNL  + D   IK L  ++ +       +  L
Sbjct: 72  MILAQPLLGSTVKTDGKDSD-PYAFLTVLNLQEHADKPPIKSLTTYIKRKASGTPSLSPL 130

Query: 152 RLLMGEQA-HDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDE 196
             L  +     +GL++++R++N+P +++PP++  L +E++WA E++
Sbjct: 131 AQLFSQTPIPPIGLILTERLINMPSEVVPPMYAMLQEEITWAIEEK 176

Involved in nuclear export, actin cytoskeleton organization and vesicular transport.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q4HZK7|BCP1_GIBZE Protein BCP1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=BCP1 PE=3 SV=1

 Score = 94.0 bits (232), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 92/147 (62%), Gaps = 5/147 (3%)

Query: 53  VVQADFVFFDPKPD-DFHGVKILLQTY--LDDTQWDLSGFVDLILAQTTVGTVVKMEGDD 109
           +V  DF +F+  P+ DFHG K LL+    +D   +++S   DL+L+Q T+G+ +K++G  
Sbjct: 33  MVNVDFEWFNFDPEVDFHGTKTLLRQLFDVDANLFNMSALADLVLSQPTIGSTIKVDGKA 92

Query: 110 DDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQR 169
           +D  ++++T LN   ++D + +K++ ++L++  Q    +  +  ++    H VGL+ S+R
Sbjct: 93  NDA-YALLTVLNTAVHQDKEPMKDIIKYLVEKAQTNSSLAPIADVLSSGKH-VGLVFSER 150

Query: 170 VVNLPPQLLPPLHDALFDEVSWATEDE 196
           ++N+P +L PPL+  L DEV  A ED+
Sbjct: 151 LINMPSELAPPLYSMLVDEVEAAVEDK 177

Involved in nuclear export, actin cytoskeleton organization and vesicular transport.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

>sp|Q6BII5|BCP1_DEBHA Protein BCP1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=BCP1 PE=3 SV=1

 Score = 93.6 bits (231), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 96/162 (59%), Gaps = 16/162 (9%)

Query: 46  EEEGSEG--VVQADFVFFDPKPD-DFHGVKILLQTYL--DDTQWDLSGFVDLILAQTTVG 100
           +++G EG  ++  DF +FD  PD DFH +K  L+     D T +D+S   DLIL + +VG
Sbjct: 29  QQQGEEGEDIINVDFDYFDLNPDVDFHAIKNFLRQLFGDDATTFDVSSLADLILTKNSVG 88

Query: 101 TVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLL-KVCQEKDVIRDLRLLM---- 155
           T +K EG + D PF+I++ +N+    +  C+K + +++L K  +  +    LR L+    
Sbjct: 89  TTIKTEGMESD-PFAILSVINMTENINKPCLKTVVDYVLQKTSKNLEFNLMLRKLLEAKD 147

Query: 156 -----GEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWA 192
                  ++  VGL++S+R++N+P +++PP++  L +E++ A
Sbjct: 148 QKATSSSKSLKVGLIISERMINMPVEVVPPMYKMLLEEMTKA 189

Involved in nuclear export, actin cytoskeleton organization and vesicular transport.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q6C7K5|BCP1_YARLI Protein BCP1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=BCP1 PE=3 SV=1

 Score = 90.1 bits (222), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 88/144 (61%), Gaps = 8/144 (5%)

Query: 53  VVQADFVFFDPKPD-DFHGVKILLQTYLDD--TQWDLSGFVDLILAQTTVGTVVKMEGDD 109
            +  DF +FD   D D+H +  LL+  LD   T ++LS   D+IL Q + GT +K +G +
Sbjct: 50  TIDVDFEYFDFNKDIDYHAIGNLLRQLLDSDSTSFNLSELSDMILEQESCGTTIKTDGKE 109

Query: 110 DDTPFSIVTALNLGRYKDHK--CIKELKEFLLKVCQE-KDVIRDLRLLMG-EQAHDVGLL 165
            D PF+I+T +N+ ++KD+K   I  L ++ +   Q+  ++ + +R L+G      VGL+
Sbjct: 110 SD-PFAILTVINMSKHKDNKKGVIAALIDYFVARTQDLPELHKQMRKLLGPSSTSKVGLI 168

Query: 166 VSQRVVNLPPQLLPPLHDALFDEV 189
           +S+R++N+P Q++PP++  L DE 
Sbjct: 169 ISERLINMPVQVVPPMYKMLLDET 192

Involved in nuclear export, actin cytoskeleton organization and vesicular transport.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q59PE7|BCP1_CANAL Protein BCP1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=BCP1 PE=3 SV=1

 Score = 84.7 bits (208), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 12/151 (7%)

Query: 53  VVQADFVFFDPKPD-DFHGVKILLQTYL--DDTQWDLSGFVDLILAQTTVGTVVKMEGDD 109
            V  DF FFD  P  DFH  K  L+     D+ +++LS   DLIL + +VGT +K EG +
Sbjct: 44  TVDVDFDFFDLNPQIDFHATKNFLRQLFGDDNGEFNLSEIADLILRENSVGTSIKTEGME 103

Query: 110 DDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQEKD----VIRDLRLLMGEQAHD---- 161
            D PF+I++ +NL    +   IK+L E++L   + K     +++ L     +   D    
Sbjct: 104 SD-PFAILSVINLTNNLNVAVIKQLIEYILNKTKSKTEFNIILKKLLTNQNDTTRDRKFK 162

Query: 162 VGLLVSQRVVNLPPQLLPPLHDALFDEVSWA 192
            GL++S+R +N+P +++PP++  L  E+  A
Sbjct: 163 TGLIISERFINMPVEVIPPMYKMLLQEMEKA 193

Involved in nuclear export, actin cytoskeleton organization and vesicular transport.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q2H137|BCP1_CHAGB Protein BCP1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=BCP1 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 86/148 (58%), Gaps = 6/148 (4%)

Query: 53  VVQADFVFFDPKPD-DFHGVKILLQTYLD-DTQ-WDLSGFVDLILAQTTVGTVVKMEGDD 109
           +V  DF  F+     DFHGVK LL+   D D Q ++LS   DLI+ Q T+G+  K++   
Sbjct: 38  IVNVDFELFNYDSQIDFHGVKTLLRQLFDTDAQLFNLSALSDLIIEQNTIGSTCKVDDKA 97

Query: 110 DDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQEKDVIRD-LRLLMGEQAHDVGLLVSQ 168
           +D  ++ +T LNL  ++  + + +L E+L    +  D +   L  L+    H VGL++++
Sbjct: 98  NDA-YAFLTVLNLQEHRAKQPVAQLIEYLTDRAKSNDSLAGVLPELLASDKH-VGLVLAE 155

Query: 169 RVVNLPPQLLPPLHDALFDEVSWATEDE 196
           R++N+P +++PP+   + DE+  A ED+
Sbjct: 156 RLLNMPAEVIPPMWTCMIDEIEAAVEDK 183

Involved in nuclear export, actin cytoskeleton organization and vesicular transport.

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
297744438	388	unnamed protein product [Vitis vinifera]	0.964	0.492	0.701	1e-62
359474781	335	PREDICTED: protein BCCIP homolog [Vitis	0.959	0.567	0.705	2e-62
357464815	323	BCCIP-like protein [Medicago truncatula]	0.873	0.535	0.697	6e-60
357463585	390	BCCIP-like protein [Medicago truncatula]	0.959	0.487	0.635	1e-59
357463583	327	BCCIP-like protein [Medicago truncatula]	0.959	0.581	0.635	2e-59
357463587	364	BCCIP-like protein [Medicago truncatula]	0.959	0.521	0.635	2e-59
388520831	333	unknown [Medicago truncatula]	0.959	0.570	0.635	2e-59
224061591	337	predicted protein [Populus trichocarpa]	0.984	0.578	0.561	9e-57
255573744	324	expressed protein, putative [Ricinus com	0.843	0.515	0.744	1e-55
297737672	366	unnamed protein product [Vitis vinifera]	0.904	0.489	0.75	1e-54

>gi|297744438|emb|CBI37700.3| unnamed protein product [Vitis vinifera]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 134/191 (70%), Positives = 155/191 (81%)

Query: 6   TRDKRRTYKSKDQKGFPLSSKDKGIPKHTLEGKSDLSGSSEEEGSEGVVQADFVFFDPKP 65
            +   + ++SK  K  P ++   GI  HTLE KS+ S  S+E+ SE V QA+F FFDPKP
Sbjct: 95  CKANHQIHESKFHKKSPPNAAGNGIINHTLEEKSEQSEYSDEDCSEVVAQANFAFFDPKP 154

Query: 66  DDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRY 125
           DDFHGVKILLQTYLD+  WDLSGFVDLIL QTTVGTVVK+EGD+DD  FS++TALNLGRY
Sbjct: 155 DDFHGVKILLQTYLDNKLWDLSGFVDLILGQTTVGTVVKIEGDEDDGVFSLITALNLGRY 214

Query: 126 KDHKCIKELKEFLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDAL 185
           K HKC+ ELKEFLL V QEKDV   LRLL+GE+A +VGLLVSQRVVNLPPQLLPPL+DAL
Sbjct: 215 KGHKCVMELKEFLLDVGQEKDVKDALRLLLGEEAQNVGLLVSQRVVNLPPQLLPPLYDAL 274

Query: 186 FDEVSWATEDE 196
           FDE+SWATEDE
Sbjct: 275 FDEISWATEDE 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474781|ref|XP_002280163.2| PREDICTED: protein BCCIP homolog [Vitis vinifera]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 134/190 (70%), Positives = 155/190 (81%)

Query: 7   RDKRRTYKSKDQKGFPLSSKDKGIPKHTLEGKSDLSGSSEEEGSEGVVQADFVFFDPKPD 66
           +   + ++SK  K  P ++   GI  HTLE KS+ S  S+E+ SE V QA+F FFDPKPD
Sbjct: 43  KANHQIHESKFHKKSPPNAAGNGIINHTLEEKSEQSEYSDEDCSEVVAQANFAFFDPKPD 102

Query: 67  DFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYK 126
           DFHGVKILLQTYLD+  WDLSGFVDLIL QTTVGTVVK+EGD+DD  FS++TALNLGRYK
Sbjct: 103 DFHGVKILLQTYLDNKLWDLSGFVDLILGQTTVGTVVKIEGDEDDGVFSLITALNLGRYK 162

Query: 127 DHKCIKELKEFLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALF 186
            HKC+ ELKEFLL V QEKDV   LRLL+GE+A +VGLLVSQRVVNLPPQLLPPL+DALF
Sbjct: 163 GHKCVMELKEFLLDVGQEKDVKDALRLLLGEEAQNVGLLVSQRVVNLPPQLLPPLYDALF 222

Query: 187 DEVSWATEDE 196
           DE+SWATEDE
Sbjct: 223 DEISWATEDE 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464815|ref|XP_003602689.1| BCCIP-like protein [Medicago truncatula] gi|355491737|gb|AES72940.1| BCCIP-like protein [Medicago truncatula]

 Score =  235 bits (600), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 122/175 (69%), Positives = 140/175 (80%), Gaps = 2/175 (1%)

Query: 23  LSSKDKGIPKHTLEGKSDLSGSSEEEGSEGVVQADFVFFDPKPDDFHGVKILLQTYLDDT 82
           LSS   G  KHTLE + D S SS+ E  +GVVQADF FFDPKP DFHGVK LLQTYLD  
Sbjct: 46  LSSTSNGFNKHTLEERPDGSESSDGEF-DGVVQADFAFFDPKPTDFHGVKTLLQTYLDVE 104

Query: 83  QWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEF-LLKV 141
           +WDLSGF DLIL QTTVGTVVK+E D D+  F++VT LNL RY++ +CI +LKEF LLK 
Sbjct: 105 EWDLSGFADLILEQTTVGTVVKVEDDKDEGVFALVTTLNLWRYREQRCIMKLKEFLLLKA 164

Query: 142 CQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDE 196
            QEK +   LRLL+GEQAH+VGLLVSQRVVNLPPQLLP L+D+LF+EVSWATEDE
Sbjct: 165 GQEKGIADKLRLLLGEQAHNVGLLVSQRVVNLPPQLLPHLYDSLFNEVSWATEDE 219

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463585|ref|XP_003602074.1| BCCIP-like protein [Medicago truncatula] gi|355491122|gb|AES72325.1| BCCIP-like protein [Medicago truncatula]

 Score =  234 bits (597), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 148/192 (77%), Gaps = 2/192 (1%)

Query: 6   TRDKRRTYKSKDQKGFPLSSKDKGIPKHTLEGKSDLSGSSEEEGSEGVVQADFVFFDPKP 65
           ++  RR+   +  +    SS   G  KHTLE + + S SS+ E  +GVVQADF FFDPKP
Sbjct: 95  SKPNRRSKSIESSEKPTRSSTSNGSSKHTLEERPEGSESSDGEF-DGVVQADFAFFDPKP 153

Query: 66  DDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRY 125
           +DFHGVK LLQTYLD  +WDLSGF DLIL QTTVGTVVK+E D+D+  F++ TALNL RY
Sbjct: 154 NDFHGVKTLLQTYLDVEEWDLSGFADLILEQTTVGTVVKVEDDEDEGVFALATALNLWRY 213

Query: 126 KDHKCIKELKEF-LLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDA 184
           ++ +CI +LKEF LLK  QEK V   LRLL+GE+AH+VGLLVSQRVVNLPPQLLP L+D+
Sbjct: 214 REQRCIMKLKEFLLLKASQEKGVGDQLRLLLGERAHNVGLLVSQRVVNLPPQLLPHLYDS 273

Query: 185 LFDEVSWATEDE 196
           LF+EVSWATEDE
Sbjct: 274 LFNEVSWATEDE 285

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463583|ref|XP_003602073.1| BCCIP-like protein [Medicago truncatula] gi|355491121|gb|AES72324.1| BCCIP-like protein [Medicago truncatula]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 148/192 (77%), Gaps = 2/192 (1%)

Query: 6   TRDKRRTYKSKDQKGFPLSSKDKGIPKHTLEGKSDLSGSSEEEGSEGVVQADFVFFDPKP 65
           ++  RR+   +  +    SS   G  KHTLE + + S SS+ E  +GVVQADF FFDPKP
Sbjct: 32  SKPNRRSKSIESSEKPTRSSTSNGSSKHTLEERPEGSESSDGEF-DGVVQADFAFFDPKP 90

Query: 66  DDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRY 125
           +DFHGVK LLQTYLD  +WDLSGF DLIL QTTVGTVVK+E D+D+  F++ TALNL RY
Sbjct: 91  NDFHGVKTLLQTYLDVEEWDLSGFADLILEQTTVGTVVKVEDDEDEGVFALATALNLWRY 150

Query: 126 KDHKCIKELKEF-LLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDA 184
           ++ +CI +LKEF LLK  QEK V   LRLL+GE+AH+VGLLVSQRVVNLPPQLLP L+D+
Sbjct: 151 REQRCIMKLKEFLLLKASQEKGVGDQLRLLLGERAHNVGLLVSQRVVNLPPQLLPHLYDS 210

Query: 185 LFDEVSWATEDE 196
           LF+EVSWATEDE
Sbjct: 211 LFNEVSWATEDE 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463587|ref|XP_003602075.1| BCCIP-like protein [Medicago truncatula] gi|355491123|gb|AES72326.1| BCCIP-like protein [Medicago truncatula]

 Score =  234 bits (596), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 148/192 (77%), Gaps = 2/192 (1%)

Query: 6   TRDKRRTYKSKDQKGFPLSSKDKGIPKHTLEGKSDLSGSSEEEGSEGVVQADFVFFDPKP 65
           ++  RR+   +  +    SS   G  KHTLE + + S SS+ E  +GVVQADF FFDPKP
Sbjct: 69  SKPNRRSKSIESSEKPTRSSTSNGSSKHTLEERPEGSESSDGEF-DGVVQADFAFFDPKP 127

Query: 66  DDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRY 125
           +DFHGVK LLQTYLD  +WDLSGF DLIL QTTVGTVVK+E D+D+  F++ TALNL RY
Sbjct: 128 NDFHGVKTLLQTYLDVEEWDLSGFADLILEQTTVGTVVKVEDDEDEGVFALATALNLWRY 187

Query: 126 KDHKCIKELKEF-LLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDA 184
           ++ +CI +LKEF LLK  QEK V   LRLL+GE+AH+VGLLVSQRVVNLPPQLLP L+D+
Sbjct: 188 REQRCIMKLKEFLLLKASQEKGVGDQLRLLLGERAHNVGLLVSQRVVNLPPQLLPHLYDS 247

Query: 185 LFDEVSWATEDE 196
           LF+EVSWATEDE
Sbjct: 248 LFNEVSWATEDE 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520831|gb|AFK48477.1| unknown [Medicago truncatula]

 Score =  233 bits (595), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 122/192 (63%), Positives = 148/192 (77%), Gaps = 2/192 (1%)

Query: 6   TRDKRRTYKSKDQKGFPLSSKDKGIPKHTLEGKSDLSGSSEEEGSEGVVQADFVFFDPKP 65
           ++  RR+   +  +    SS   G  KHTLE + + S SS+ E  +GVVQADF FFDPKP
Sbjct: 32  SKPNRRSKSIESSEKPTRSSTSNGSSKHTLEERPEGSESSDGEF-DGVVQADFAFFDPKP 90

Query: 66  DDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRY 125
           +DFHGVK LLQTYLD  +WDLSGF DLIL QTTVGTVVK+E D+D+  F++ TALNL RY
Sbjct: 91  NDFHGVKTLLQTYLDVEEWDLSGFADLILEQTTVGTVVKVEDDEDEGVFALATALNLWRY 150

Query: 126 KDHKCIKELKEF-LLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDA 184
           ++ +CI +LKEF LLK  QEK V   LRLL+GE+AH+VGLLVSQRVVNLPPQLLP L+D+
Sbjct: 151 REQRCIMKLKEFLLLKASQEKGVGDQLRLLLGERAHNVGLLVSQRVVNLPPQLLPHLYDS 210

Query: 185 LFDEVSWATEDE 196
           LF+EVSWATEDE
Sbjct: 211 LFNEVSWATEDE 222

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061591|ref|XP_002300556.1| predicted protein [Populus trichocarpa] gi|222847814|gb|EEE85361.1| predicted protein [Populus trichocarpa]

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 132/235 (56%), Positives = 157/235 (66%), Gaps = 40/235 (17%)

Query: 1   MPRGPTRDKRRTYKSKDQKGFPLSSK-----DKGIPKHTLEGKSDLSGSSEEEGSE---- 51
           MPR PTR +RR+  ++     P S          +PKH + G       S  EG      
Sbjct: 1   MPRKPTR-RRRSLIARPLTFAPFSRSLAHLHSTFMPKHQMLGSKVPGSPSHNEGVPDSIS 59

Query: 52  ------------------------------GVVQADFVFFDPKPDDFHGVKILLQTYLDD 81
                                         G VQADF FFDPKPDDFHGVKILLQ+YLD+
Sbjct: 60  LTLYQGGAVVKKTSKEKIEQSESSEEEEFGGEVQADFAFFDPKPDDFHGVKILLQSYLDN 119

Query: 82  TQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLLKV 141
           T+WDLSGFVDLIL QTTVGTVVK+E D+D+  FS+V+ALNLGRYKDHKCI +LKE+LLK+
Sbjct: 120 TEWDLSGFVDLILEQTTVGTVVKIEDDEDNGLFSVVSALNLGRYKDHKCIADLKEYLLKL 179

Query: 142 CQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDE 196
           C EK +  DLR+L+GEQAH+VGLLVS+RVVNLPPQLLPPL+D+LFDE+SWATEDE
Sbjct: 180 CLEKSIKGDLRVLLGEQAHNVGLLVSRRVVNLPPQLLPPLYDSLFDEISWATEDE 234

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573744|ref|XP_002527793.1| expressed protein, putative [Ricinus communis] gi|223532828|gb|EEF34603.1| expressed protein, putative [Ricinus communis]

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 145/168 (86%), Gaps = 1/168 (0%)

Query: 29  GIPKHTLEGKSDLSGSSEEEGSEGVVQADFVFFDPKPDDFHGVKILLQTYLDDTQWDLSG 88
           GI KH+ + K+  S SSEEE  EG +QADFVFFDPKPDDFHGVKILLQTYLD+ +WDLSG
Sbjct: 55  GIIKHSSKEKNKQSESSEEEELEGFIQADFVFFDPKPDDFHGVKILLQTYLDNKEWDLSG 114

Query: 89  FVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQEKDVI 148
           FVD+IL QTTVGTVVK+E DD+D  FS+ T LNL RYKDHKCI ++KEFL+KVC E++++
Sbjct: 115 FVDIILGQTTVGTVVKIE-DDEDGLFSVTTVLNLRRYKDHKCIMDIKEFLIKVCLERNIL 173

Query: 149 RDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDE 196
            DLRLL+GEQA  VGLLVSQRVVNLPP+LLPPL+DALFDEV WATEDE
Sbjct: 174 DDLRLLLGEQAQYVGLLVSQRVVNLPPELLPPLYDALFDEVLWATEDE 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737672|emb|CBI26873.3| unnamed protein product [Vitis vinifera]

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/180 (75%), Positives = 150/180 (83%), Gaps = 1/180 (0%)

Query: 17  DQKGFPLSSKDKGIPKHTLEGKSDLSGSSEEEGSEGVVQADFVFFDPKPDDFHGVKILLQ 76
           D+K  P ++ ++ I  HTLE KS  S SSEE+ SE V QADF FFDPKPDDFHGVKILLQ
Sbjct: 47  DRKSPPNAAGNRFI-NHTLEEKSARSESSEEDSSEVVAQADFAFFDPKPDDFHGVKILLQ 105

Query: 77  TYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKE 136
           TYLD+ QWDLSGFVDLIL  TTVGTVVK+E D+DD  FS++TALNLGRYKDHKCI ELKE
Sbjct: 106 TYLDNKQWDLSGFVDLILGNTTVGTVVKIEDDEDDGVFSLITALNLGRYKDHKCIMELKE 165

Query: 137 FLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDE 196
           FLLKV  E+DV   LRLL+GE+AH+VGL VSQ VVNLPPQLLPPL DALFDEVSWATEDE
Sbjct: 166 FLLKVGPEEDVKDSLRLLLGEEAHNVGLSVSQCVVNLPPQLLPPLCDALFDEVSWATEDE 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2050584	326	AT2G44510 "AT2G44510" [Arabido	0.646	0.392	0.625	9.9e-39
ASPGD|ASPL0000002569	290	AN6865 [Emericella nidulans (t	0.641	0.437	0.320	1.5e-13
UNIPROTKB|G4MUW7	289	MGG_01709 "Uncharacterized pro	0.636	0.435	0.330	1.9e-13
POMBASE|SPCC613.08	282	SPCC613.08 "CDK regulator, inv	0.641	0.450	0.298	3.2e-12
UNIPROTKB|E1BUA8	303	BCCIP "Uncharacterized protein	0.626	0.409	0.284	6.4e-11
UNIPROTKB|Q2NL37	306	BCCIP "BRCA2 and CDKN1A-intera	0.621	0.401	0.291	1.7e-09
RGD|1307362	315	Bccip "BRCA2 and CDKN1A intera	0.621	0.390	0.276	3.1e-09
MGI|MGI:1913415	316	Bccip "BRCA2 and CDKN1A intera	0.621	0.389	0.291	3.1e-09
UNIPROTKB|Q9P287	314	BCCIP "BRCA2 and CDKN1A-intera	0.520	0.328	0.289	4e-09
UNIPROTKB|F1SDM6	318	BCCIP "Uncharacterized protein	0.621	0.386	0.297	6.8e-09

TAIR|locus:2050584 AT2G44510 "AT2G44510" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 80/128 (62%), Positives = 99/128 (77%)

Query:    69 HGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDH 128
             HGVKILLQ YLDD +WDLS FVD IL QTTVGTVVK+  D+D++ F++VTALN+ R KD+
Sbjct:    97 HGVKILLQNYLDDKEWDLSSFVDCILEQTTVGTVVKVADDEDESVFALVTALNMARDKDN 156

Query:   129 KCIKELKEFLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNXXXXXXXXXHDALFDE 188
             KC +ELKEFL KVC EK++  +L +L+ ++A DVGLLVSQRV+N         +D LFDE
Sbjct:   157 KCFRELKEFLRKVCSEKNIANNLEMLLEKKAQDVGLLVSQRVMNLPPQLLPPLYDGLFDE 216

Query:   189 VSWATEDE 196
             VSWA EDE
Sbjct:   217 VSWAIEDE 224

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005730 "nucleolus" evidence=IDA

ASPGD|ASPL0000002569 AN6865 [Emericella nidulans (taxid:162425)]

 Score = 178 (67.7 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 42/131 (32%), Positives = 71/131 (54%)

Query:    69 HGVKILLQTYLD-DTQ-WDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYK 126
             HG+K L++   D D Q  DLSG  D+ILAQ  +G+ VK +G D D P++ +T LNL  + 
Sbjct:    47 HGIKHLIRQLFDVDAQDLDLSGLTDMILAQPLLGSTVKTDGKDSD-PYAFLTVLNLQEHA 105

Query:   127 DHKCIKELKEFLLKVCQEKDVIRDLRLLMGEQA-HDVGLLVSQRVVNXXXXXXXXXHDAL 185
             D   IK L  ++ +       +  L  L  +     +GL++++R++N         +  L
Sbjct:   106 DKPPIKSLTTYIKRKASGTPSLSPLAQLFSQTPIPPIGLILTERLINMPSEVVPPMYAML 165

Query:   186 FDEVSWATEDE 196
              +E++WA E++
Sbjct:   166 QEEITWAIEEK 176

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G4MUW7 MGG_01709 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 177 (67.4 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 43/130 (33%), Positives = 73/130 (56%)

Query:    69 HGVKILLQTYLD-DTQ-WDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYK 126
             HGVK L++  LD D+Q +DLS   D+ILAQ T+G+ VK++G + D  ++ +TALNL   +
Sbjct:    54 HGVKALVRQLLDVDSQLFDLSALADVILAQHTIGSTVKVDGKETDA-YAFLTALNLHENR 112

Query:   127 DHKCIKELKEFLLKVCQEKDVIRDLRLLMGEQAHDVGLLVSQRVVNXXXXXXXXXHDALF 186
             D   +  L +++ +       +  +  L+    H VGL+++ R++N         +  L 
Sbjct:   113 DKAPVVALTKYIAEKAAGSQSLAIVPELLASGKH-VGLILADRLINVPSEIAPPMYSMLI 171

Query:   187 DEVSWATEDE 196
             DE+  A ED+
Sbjct:   172 DEIEAAVEDK 181

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPCC613.08 SPCC613.08 "CDK regulator, involved in ribosome export (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 166 (63.5 bits), Expect = 3.2e-12, P = 3.2e-12
 Identities = 40/134 (29%), Positives = 76/134 (56%)

Query:    69 HGVKILLQTYL--DDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYK 126
             H  K LL+  L  D T  +LS   DLIL+Q  +G+ VK++G++ D P+++++ +NL   +
Sbjct:    41 HAFKNLLKQLLGYDHTNVNLSALADLILSQPLLGSTVKVDGNNSD-PYAMLSVINLNTRR 99

Query:   127 DHKCIKELKEFLL-KVCQEKDVIRD--LRLLMGEQAHDVGLLVSQRVVNXXXXXXXXXHD 183
             D   IK+L  +++ ++ +    + +   +LL       VGL+V++R++N         ++
Sbjct:   100 DEPVIKQLTSYIISRLAKSNSRLENELQKLLEPNSGSQVGLIVNERLINMPVQVIPPMYN 159

Query:   184 ALFDEVSWA-TEDE 196
              L +E+ WA  E+E
Sbjct:   160 MLLEEMQWAINENE 173

GO:0000055 "ribosomal large subunit export from nucleus" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006611 "protein export from nucleus" evidence=ISO

UNIPROTKB|E1BUA8 BCCIP "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 139 (54.0 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
 Identities = 39/137 (28%), Positives = 67/137 (48%)

Query:    69 HGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKM-----EG-DDDDTP----FSIVT 118
             +G+K LLQ        + +   D+++ Q  +G+++K      +G DDDD      F  ++
Sbjct:    60 NGIKKLLQQLFLKAPVNTAELTDILIQQNHIGSIIKQAEVQDDGSDDDDVDDDEVFGFIS 119

Query:   119 ALNLGRYKDHKCIKELKEFLLKVCQ---EKDVIRDLRLLMGEQAHDVGLLVSQRVVNXXX 175
              LNL   K  +C +++KE +L  C+   E+ V+  L  L+ +    VGLL+S+R +N   
Sbjct:   120 FLNLTERKGTQCAEQIKELILSRCEKSCEQRVVEQLDKLLKDDTKPVGLLLSERFINVPP 179

Query:   176 XXXXXXHDALFDEVSWA 192
                   H  L  E+  A
Sbjct:   180 QIALPMHQQLQKELKEA 196

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0019207 "kinase regulator activity" evidence=IEA

GO:0019908 "nuclear cyclin-dependent protein kinase holoenzyme complex" evidence=IEA

GO:0061101 "neuroendocrine cell differentiation" evidence=IEA

UNIPROTKB|Q2NL37 BCCIP "BRCA2 and CDKN1A-interacting protein" [Bos taurus (taxid:9913)]

 Score = 143 (55.4 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 39/134 (29%), Positives = 65/134 (48%)

Query:    70 GVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKM----EGDDD----DTPFSIVTALN 121
             G+K LLQ        + +   +L++ Q  +G+V+K     E  DD    D  F  ++ LN
Sbjct:    65 GIKKLLQQLFLKAPVNTAELTNLLIQQNHIGSVIKQTDVSEDSDDEVDEDEIFGFISLLN 124

Query:   122 LGRYKDHKCIKELKEFLLKVCQ---EKDVIRDLRLLMGEQAHDVGLLVSQRVVNXXXXXX 178
             L   K   C +++KE +L++C+   EK ++  L  L  + A  VG L+S+R +N      
Sbjct:   125 LTERKGTPCAEQIKELILRLCEKNCEKSMVEQLDRLFNDTARPVGFLLSERFINVPPQIA 184

Query:   179 XXXHDALFDEVSWA 192
                H  L  E++ A
Sbjct:   185 LPMHQQLQKELAEA 198

GO:0061101 "neuroendocrine cell differentiation" evidence=IEA

GO:0019908 "nuclear cyclin-dependent protein kinase holoenzyme complex" evidence=IEA

GO:0019207 "kinase regulator activity" evidence=IEA

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

RGD|1307362 Bccip "BRCA2 and CDKN1A interacting protein" [Rattus norvegicus (taxid:10116)]

 Score = 141 (54.7 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 37/134 (27%), Positives = 68/134 (50%)

Query:    70 GVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKM-------EGD-DDDTPFSIVTALN 121
             G+K LLQ        + +   +L++ Q  +G+V+K        +G+ D+D  F  ++ LN
Sbjct:    74 GIKKLLQQLFLKAPVNTAELANLLIQQNHIGSVIKQTDVSEDSDGEVDEDEIFGFISLLN 133

Query:   122 LGRYKDHKCIKELKEFLLKVCQ---EKDVIRDLRLLMGEQAHDVGLLVSQRVVNXXXXXX 178
             L   K  +C +++KE +L  C+   E+ ++  L  L+ + +  VGLL+S+R +N      
Sbjct:   134 LSERKGTQCAEQIKELVLSSCEKSCEQSMVEQLDKLLNDTSKPVGLLLSERFINVPPQIA 193

Query:   179 XXXHDALFDEVSWA 192
                H  L  E++ A
Sbjct:   194 LPMHQQLQKELAEA 207

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA;ISO

GO:0019207 "kinase regulator activity" evidence=IEA;ISO

GO:0019908 "nuclear cyclin-dependent protein kinase holoenzyme complex" evidence=IEA;ISO

GO:0061101 "neuroendocrine cell differentiation" evidence=IEA;ISO

MGI|MGI:1913415 Bccip "BRCA2 and CDKN1A interacting protein" [Mus musculus (taxid:10090)]

 Score = 141 (54.7 bits), Expect = 3.1e-09, P = 3.1e-09
 Identities = 39/134 (29%), Positives = 66/134 (49%)

Query:    70 GVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKM----EGDDD----DTPFSIVTALN 121
             G+K LLQ        + +   +L++ Q  +G+V+K     E  DD    D  F  ++ LN
Sbjct:    75 GIKKLLQQLFLKAPVNTAELTNLLMQQNHIGSVIKQTDVSEDSDDEVDEDEIFGFISLLN 134

Query:   122 LGRYKDHKCIKELKEFLLKVCQ---EKDVIRDLRLLMGEQAHDVGLLVSQRVVNXXXXXX 178
             L   K  +C +++KE +L  C+   E+ ++  L  L+ + +  VGLL+S+R +N      
Sbjct:   135 LTERKGTQCAEQIKELVLSFCEKTCEQSMVEQLDKLLNDTSKPVGLLLSERFINVPPQIA 194

Query:   179 XXXHDALFDEVSWA 192
                H  L  E+S A
Sbjct:   195 LPMHQQLQKELSEA 208

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0019207 "kinase regulator activity" evidence=ISO

GO:0019908 "nuclear cyclin-dependent protein kinase holoenzyme complex" evidence=ISO

GO:0061101 "neuroendocrine cell differentiation" evidence=ISO

UNIPROTKB|Q9P287 BCCIP "BRCA2 and CDKN1A-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 140 (54.3 bits), Expect = 4.0e-09, P = 4.0e-09
 Identities = 33/114 (28%), Positives = 61/114 (53%)

Query:    70 GVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKM-----EGDDD---DTPFSIVTALN 121
             G+K LLQ        + +   DL++ Q  +G+V+K      + +DD   D  F  ++ LN
Sbjct:    73 GIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQTDVSEDSNDDMDEDEVFGFISLLN 132

Query:   122 LGRYKDHKCIKELKEFLLKVCQ---EKDVIRDLRLLMGEQAHDVGLLVSQRVVN 172
             L   K  +C+++++E +L+ C+   EK ++  L   + +    VGLL+S+R +N
Sbjct:   133 LTERKGTQCVEQIQELVLRFCEKNCEKSMVEQLDKFLNDTTKPVGLLLSERFIN 186

GO:0006281 "DNA repair" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0061101 "neuroendocrine cell differentiation" evidence=IDA

GO:0005634 "nucleus" evidence=TAS

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IDA

GO:0019207 "kinase regulator activity" evidence=IDA

GO:0019908 "nuclear cyclin-dependent protein kinase holoenzyme complex" evidence=IDA

UNIPROTKB|F1SDM6 BCCIP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 138 (53.6 bits), Expect = 6.8e-09, P = 6.8e-09
 Identities = 41/138 (29%), Positives = 68/138 (49%)

Query:    70 GVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKM-----EGDDD---DTPFSIVTALN 121
             G+K LLQ        + +   DL++ Q  +G+V+K      + DDD   D  F  ++ LN
Sbjct:    73 GIKKLLQQLFLKAPVNTAELTDLLIQQNHIGSVIKQSVVSEDSDDDVDEDEIFGFISLLN 132

Query:   122 LGRYK----DHKCIKELKEFLLKVCQE---KDVIRDLRLLMGEQAHDVGLLVSQRVVNXX 174
             L   K       C +++KE++L++C++   K +   L  L+G+ A  VG L+S+R VN  
Sbjct:   133 LTERKVALQGTPCAEQIKEWILRLCEKNCGKGLAEQLGRLLGDAARPVGFLLSERFVNVP 192

Query:   175 XXXXXXXHDALFDEVSWA 192
                    H  L  E++ A
Sbjct:   193 PQIALPLHQQLQKELAEA 210

GO:0061101 "neuroendocrine cell differentiation" evidence=IEA

GO:0019908 "nuclear cyclin-dependent protein kinase holoenzyme complex" evidence=IEA

GO:0019207 "kinase regulator activity" evidence=IEA

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
pfam13862	189	pfam13862, BCIP, p21-C-terminal region-binding pro	3e-62

>gnl|CDD|222424 pfam13862, BCIP, p21-C-terminal region-binding protein

 Score =  190 bits (486), Expect = 3e-62
 Identities = 63/148 (42%), Positives = 94/148 (63%), Gaps = 3/148 (2%)

Query: 52  GVVQADFVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDD 111
             V  DF FFDP   DFHG+K LL+    D + DLS   DLIL Q T+G+V+K    ++D
Sbjct: 1   EEVNVDFEFFDPNDIDFHGIKNLLRQLFLDAEIDLSELADLILEQNTIGSVIKQSDGEED 60

Query: 112 TPFSIVTALNLGRYKDHKCIKELKEFLLKVCQE---KDVIRDLRLLMGEQAHDVGLLVSQ 168
             +  ++ LNL +YKD   IK+L+E+LL   ++   K+V+  L  L+ +    VGLL+++
Sbjct: 61  DVYGFLSVLNLTQYKDSPAIKQLREYLLDKAKKSADKEVLAKLEKLLSDSDKKVGLLINE 120

Query: 169 RVVNLPPQLLPPLHDALFDEVSWATEDE 196
           R +N+PP+L+PPL+  L +E+ WA EDE
Sbjct: 121 RFINMPPELVPPLYKMLLEEIEWAQEDE 148

This family of p21-binding proteins is important as a modulator of p21 activity. The domain binds the C-terminal region of p21 in a ternary complex with CDK2, which results in inhibition of the kinase activity of CDK2. Length = 189

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
PF13862	194	BCIP: p21-C-terminal region-binding protein	100.0
KOG3034	308	consensus Isoamyl acetate-hydrolyzing esterase and	100.0
PF02228	92	Gag_p19: Major core protein p19; InterPro: IPR0031	80.21

>PF13862 BCIP: p21-C-terminal region-binding protein

Probab=100.00  E-value=1.1e-54  Score=365.22  Aligned_cols=145  Identities=46%  Similarity=0.846  Sum_probs=137.7

Q ss_pred             ceEEEEEeecCCCCCcHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeeCCccCCchhH
Q 029165           52 GVVQADFVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCI  131 (198)
Q Consensus        52 e~V~VDFeffdp~~~DfhgIK~LL~qlf~~~~~dlseLaDlIi~Q~~vGTvIK~~~ded~dvfg~~SvLNL~~~k~~~~i  131 (198)
                      |+|||||+||||++.||||||+||+|||+++.||+++|||+|++|++||||||++|+++++||||+|||||++|++++|+
T Consensus         1 e~V~vdFe~~dp~~~D~hgIk~LL~ql~~~~~~dl~~LadlIi~Q~~vGsvVK~~d~~e~dvyg~~Svlnl~~~k~~~~i   80 (194)
T PF13862_consen    1 EEVNVDFEFFDPNEIDFHGIKNLLQQLFLDAEIDLSELADLIIEQNNVGSVVKQADGDEDDVYGFLSVLNLTQHKDHPCI   80 (194)
T ss_pred             CeEEEEEEeeCCChhhHHHHHHHHHHhccccCcCHHHHHHHHHcCCCCceEEEecCCCCCcceEEEEEEEcccccccHHH
Confidence            47999999999999999999999999999999999999999999999999999954456799999999999999999999


Q ss_pred             HHHHHHHHHhcc---cchhHHHHHHHhcCCCCceEEEeecccccCCccchHHHHHHHHHHHHHhhhcc
Q 029165          132 KELKEFLLKVCQ---EKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDE  196 (198)
Q Consensus       132 ~~L~~yLl~~~~---~~~~~~~L~~lL~~~~~~vGLlinER~iN~P~ql~ppL~~~L~eEI~wA~ede  196 (198)
                      ++|++||+++|+   .+++.+.|+++|++++++|||||||||+|||+||+||||++|++||+||.+++
T Consensus        81 ~~l~~yl~~k~~~~~~~~~~~~l~~~l~~~~~~vGLlinER~iN~P~ql~ppl~~~L~~ei~~a~~~~  148 (194)
T PF13862_consen   81 KQLRKYLLSKCSKSADKEVKKKLEKLLSSSNKNVGLLINERFINIPPQLAPPLYKMLLEEIEWAQEDE  148 (194)
T ss_pred             HHHHHHHHHHhhhccChhHHHHHHHHHhccCCCeEEEEehhhhcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999886   56788999999998889999999999999999999999999999999999875

>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]

Probab=100.00  E-value=5.6e-52  Score=365.52  Aligned_cols=192  Identities=36%  Similarity=0.613  Sum_probs=174.7

Q ss_pred             CCccchhhhcccCCCCCCCCCCCCCCCccccCCCCCCCCCCc------CCCCCceEEEEEeecCCCCCcHHHHHHHHHHh
Q 029165            5 PTRDKRRTYKSKDQKGFPLSSKDKGIPKHTLEGKSDLSGSSE------EEGSEGVVQADFVFFDPKPDDFHGVKILLQTY   78 (198)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~sd------de~~~e~V~VDFeffdp~~~DfhgIK~LL~ql   78 (198)
                      ++|+|||++.|+.++.+-++.+|.-.++.+++.+.+++|++|      ++..+++||+|||||+|++.||||||+||+|+
T Consensus         2 ~~~~~~~~~~s~~k~~~l~~~~r~~~e~~~v~~~~edddD~d~~~eeek~~e~e~vnidFE~~~p~d~D~~giknLL~Ql   81 (308)
T KOG3034|consen    2 ASRSKRRAVESKYKQLPLPPFQRDEEEEEDVEDESEDDDDEDKENEEEKEVEDEEVNIDFEAYSPSDVDADGIKNLLQQL   81 (308)
T ss_pred             CCcccchhhhhcCCCCCCcchhccccccccccccccCcccccccchhhhccccceEeccccccCCCCcchHHHHHHHHHH
Confidence            578999999999999999999999999888887765543322      22346789999999999999999999999999


Q ss_pred             hccCCCChhhHHHHHHcCCCcceEEEecCCC-------CCCceEEEEeeeCCccCCchhHHHHHHHHHHhcc---cchhH
Q 029165           79 LDDTQWDLSGFVDLILAQTTVGTVVKMEGDD-------DDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQ---EKDVI  148 (198)
Q Consensus        79 f~~~~~dlseLaDlIi~Q~~vGTvIK~~~de-------d~dvfg~~SvLNL~~~k~~~~i~~L~~yLl~~~~---~~~~~  148 (198)
                      |.++++|+++|||+||.|+.+|+|||+++++       .+|+|||+|+||++..+..+||++|.+|+++.|+   .+.+.
T Consensus        82 fl~~~Vnla~laDlii~q~~~gsvikq~~~~e~~~d~m~~D~~~~~s~lnl~~~~~~~~ikqL~~yvL~r~~k~~~k~v~  161 (308)
T KOG3034|consen   82 FLRAHVNLAALADLIIAQNHIGSVIKQDDDSETENDDMDEDPFGFLSFLNLTARKDTKCIKQLQEYVLRRCKKNAEKEVV  161 (308)
T ss_pred             hccccccHHHhHHHHhhcccccceeEecccccccccccccCCceEEEEeehhhhccchHHHHHHHHHHHHHhhcCCHHHH
Confidence            9999999999999999999999999999854       1578999999999999999999999999999887   56799


Q ss_pred             HHHHHHhcCCCCceEEEeecccccCCccchHHHHHHHHHHHHHhh-hcc
Q 029165          149 RDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWAT-EDE  196 (198)
Q Consensus       149 ~~L~~lL~~~~~~vGLlinER~iN~P~ql~ppL~~~L~eEI~wA~-ede  196 (198)
                      +.|+.++.+++++|||||||||||||+||+||||++|++||+||. +++
T Consensus       162 ~~lk~ll~s~~k~vgLlvsERliN~P~qv~pPly~~l~eEla~A~~~~k  210 (308)
T KOG3034|consen  162 EQLKLLLDSGTKPVGLLVSERLINMPPQVVPPLYQSLQEELAGAHRENK  210 (308)
T ss_pred             HHHHHHHhcCCCceeEEeehhhhcCCchhhhHHHHHHHHHHHHHhccCC
Confidence            999999999999999999999999999999999999999999999 554

>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []

Probab=80.21  E-value=1.8  Score=32.58  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=24.4

Q ss_pred             CCCCcHHHHHHHHHHhhcc----CCCChhhHHHHHHc
Q 029165           63 PKPDDFHGVKILLQTYLDD----TQWDLSGFVDLILA   95 (198)
Q Consensus        63 p~~~DfhgIK~LL~qlf~~----~~~dlseLaDlIi~   95 (198)
                      |++-|||-+|++|.-.+..    +.+|.|-||.+|-.
T Consensus        38 PS~~DF~qLr~flk~alkTpvwl~pi~yslla~lipk   74 (92)
T PF02228_consen   38 PSSFDFHQLRNFLKLALKTPVWLNPINYSLLASLIPK   74 (92)
T ss_dssp             -STTTHHHHHHHHHHHHT-TTSTTTT-TTTHHHHS-S
T ss_pred             CCcccHHHHHHHHHHHHcCCeeeccccHHHHHHHccC
Confidence            5556999999999876643    78999999998754

Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00