Citrus Sinensis ID: 029167

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFPSRLDFPLPFLNRFSKLNLQKLELVRGSIDF
Secondary Structure (PSIPRED)
cccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccHHHccccccccHHHHHHHHHHHHcccEEEEcccccccccEEEEEEEEcccccEEEEcccccccccccccccccccccccccEEEEccccEEEEEEEcccccccccHHHHcccccccccccHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccEEEcHHHHccccccccccHHHHHHcccccccHHHHHHHHHHHHcccEEEEEEEEEccccEEEEEEEEEccccEccEEEEcccccccccEEEEEEcccccccEEEcccEEEEEEEEEcccccHHHHHHHHHHccHEEEccccccccccHEEEccccc
Coil and Loop (DISEMBL)
MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFfqrakpykdhptILKMQELAKELGvvmpvsffeeannahynsiaiidadgsdlglyrkshipdgpgyqekfyfnpgdtgfkvgAWNNLNLNLICFfdlifdddfpsrldfplpflnrfsklnLQKLELVRGSIDF
Flexible Loop (DISEMBL)
MEKGKRREVVVSAlqfactddvstNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFPSRLDFPLPFLnrfsklnlqklelvrgsidf
Low Complexity Region (SEG)
MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWnnlnlnlicffdlifdddfPSRLDFPLPFLNRFSKLNLQKLELVRGSIDF
Disordered region (IsUnstruct)
********VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFPSRLDFPLPFLNRFSKLNLQKLELV******
Disordered Region (DISOPRED)
******R***VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFPSRLDFPLPFLNRFSKLNLQKLELVRGSID*
Disordered Region (DISEMBL)
********VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFPSRLDFPLPFLNRFSKLNLQKLELVRGSIDF
Disordered Region (DISPRO)
****KRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFPSRLDFPLPFLNRFSKLNLQKLELVRGS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFPSRLDFPLPFLNRFSKLNLQKLELVRGSIDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q3HVN1	300	N-carbamoylputrescine ami	N/A	no	0.712	0.47	0.879	2e-70
Q9XGI9	300	N-carbamoylputrescine ami	N/A	no	0.712	0.47	0.872	3e-70
Q8VYF5	326	N-carbamoylputrescine ami	no	no	0.722	0.438	0.735	1e-68
Q93XI4	301	N-carbamoylputrescine ami	yes	no	0.717	0.471	0.788	1e-62
Q9UBR1	384	Beta-ureidopropionase OS=	yes	no	0.575	0.296	0.305	9e-07
Q5RBM6	384	Beta-ureidopropionase OS=	yes	no	0.575	0.296	0.305	9e-07
P60327	304	N-carbamoyl-D-amino acid	N/A	no	0.560	0.365	0.295	2e-06
Q6INI7	276	Omega-amidase NIT2-B OS=X	N/A	no	0.636	0.456	0.321	3e-06
Q9X0Y0	576	Probable glutamine-depend	yes	no	0.646	0.222	0.304	3e-06
Q28IE5	276	Omega-amidase NIT2 OS=Xen	no	no	0.636	0.456	0.299	3e-06

>sp|Q3HVN1|AGUB_SOLTU N-carbamoylputrescine amidase OS=Solanum tuberosum GN=CPA PE=2 SV=1

 Score =  264 bits (675), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/141 (87%), Positives = 133/141 (94%)

Query: 5   KRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFF 64
           K R V V+ALQFACTDDVSTN+ATAERLVRAAH KGANIILIQELFEGYYFCQAQ+E+FF
Sbjct: 4   KNRLVTVAALQFACTDDVSTNVATAERLVRAAHQKGANIILIQELFEGYYFCQAQKEEFF 63

Query: 65  QRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI 124
            RAKPY  HPTI++MQ LAKELGVV+PVSFFEEANNAHYNS+AIIDADG+DLGLYRKSHI
Sbjct: 64  HRAKPYLGHPTIVRMQNLAKELGVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSHI 123

Query: 125 PDGPGYQEKFYFNPGDTGFKV 145
           PDGPGYQEKFYFNPGDTGFKV
Sbjct: 124 PDGPGYQEKFYFNPGDTGFKV 144

Involved in polyamine biosynthesis.
Solanum tuberosum (taxid: 4113)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 5EC: 3

>sp|Q9XGI9|AGUB_SOLLC N-carbamoylputrescine amidase OS=Solanum lycopersicum GN=CPA PE=2 SV=1

 Score =  264 bits (674), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 123/141 (87%), Positives = 133/141 (94%)

Query: 5   KRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFF 64
           K R V V+ALQFACTDDVSTN+ATAERLVRAAH KGANIILIQELFEGYYFCQAQ+E+FF
Sbjct: 4   KNRLVTVAALQFACTDDVSTNVATAERLVRAAHQKGANIILIQELFEGYYFCQAQKEEFF 63

Query: 65  QRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI 124
            RAKPY  HPTI++MQ LAKELGVV+PVSFFEEANNAHYNS+AIIDADG+DLGLYRKSHI
Sbjct: 64  HRAKPYPGHPTIVRMQNLAKELGVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSHI 123

Query: 125 PDGPGYQEKFYFNPGDTGFKV 145
           PDGPGYQEK+YFNPGDTGFKV
Sbjct: 124 PDGPGYQEKYYFNPGDTGFKV 144

Involved in polyamine biosynthesis.

Solanum lycopersicum (taxid: 4081)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 3

>sp|Q8VYF5|AGUB_ARATH N-carbamoylputrescine amidase OS=Arabidopsis thaliana GN=CPA PE=1 SV=1

 Score =  258 bits (660), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 125/170 (73%), Positives = 138/170 (81%), Gaps = 27/170 (15%)

Query: 3   KGKRREVVVSALQFACTDDVSTNLATAER---------------------------LVRA 35
           +G+RREVVVS+LQFAC+DD+STN+A AER                           LVR 
Sbjct: 4   EGRRREVVVSSLQFACSDDISTNVAAAERFVSLSSSLPLSNYQSLPSSSSFKFPYALVRE 63

Query: 36  AHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFF 95
           AH KGANIILIQELFEGYYFCQAQREDFF+RAKPYK+HPTI +MQ+LAKELGVV+PVSFF
Sbjct: 64  AHAKGANIILIQELFEGYYFCQAQREDFFKRAKPYKNHPTIARMQKLAKELGVVIPVSFF 123

Query: 96  EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKV 145
           EEAN AHYNSIAIIDADG+DLG+YRKSHIPDGPGYQEKFYFNPGDTGFKV
Sbjct: 124 EEANTAHYNSIAIIDADGTDLGIYRKSHIPDGPGYQEKFYFNPGDTGFKV 173

Involved in polyamine biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 3

>sp|Q93XI4|AGUB_ORYSJ N-carbamoylputrescine amidase OS=Oryza sativa subsp. japonica GN=CPA PE=2 SV=1

 Score =  239 bits (609), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 126/142 (88%)

Query: 4   GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDF 63
           G   +V V+A+QFACTD  S N+ TAERL+R AH KGANI+L+QELFEG YFCQAQR DF
Sbjct: 6   GAGSKVSVAAVQFACTDVESENVDTAERLIREAHKKGANIVLVQELFEGQYFCQAQRLDF 65

Query: 64  FQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSH 123
           FQRAKPYK +PTI++ Q+LAKEL VV+PVSFFEEANNAHYNS+AIIDADG+DLGLYRKSH
Sbjct: 66  FQRAKPYKGNPTIIRFQKLAKELEVVIPVSFFEEANNAHYNSVAIIDADGTDLGLYRKSH 125

Query: 124 IPDGPGYQEKFYFNPGDTGFKV 145
           IPDGPGYQEKFYFNPGDTGFK 
Sbjct: 126 IPDGPGYQEKFYFNPGDTGFKA 147

Involved in polyamine biosynthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 5

EC: 3

>sp|Q9UBR1|BUP1_HUMAN Beta-ureidopropionase OS=Homo sapiens GN=UPB1 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 32  LVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90
           +V  A   G NII  QE +   + FC  ++  + + A+  +D PT    Q+LAK   +V+
Sbjct: 103 IVEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKNHDMVV 162

Query: 91  PVSFFE---EANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKV 145
                E   E  +  +N+  +I   G+ LG  RK+HIP    + E  Y+  G+ G  V
Sbjct: 163 VSPILERDSEHGDVLWNTAVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPV 220

Converts N-carbamyl-beta-aminoisobutyric acid and N-carbamyl-beta-alanine to, respectively, beta-aminoisobutyric acid and beta-alanine, ammonia and carbon dioxide.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|Q5RBM6|BUP1_PONAB Beta-ureidopropionase OS=Pongo abelii GN=UPB1 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 32  LVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90
           +V  A   G NII  QE +   + FC  ++  + + A+  +D PT    Q+LAK   +V+
Sbjct: 103 IVEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKNHDMVV 162

Query: 91  PVSFFE---EANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKV 145
                E   E  +  +N+  +I   G+ LG  RK+HIP    + E  Y+  G+ G  V
Sbjct: 163 VSPILERDSEHGDVLWNTAVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHPV 220

Converts N-carbamyl-beta-aminoisobutyric acid and N-carbamyl-beta-alanine to, respectively, beta-aminoisobutyric acid and beta-alanine, ammonia and carbon dioxide.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

>sp|P60327|DCAS_AGRSK N-carbamoyl-D-amino acid hydrolase OS=Agrobacterium sp. (strain KNK712) PE=1 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 21/132 (15%)

Query: 32  LVRAAHGKGANIILIQEL-----FEGYYFC-QAQREDFFQRAKPYKDHPTILKMQELAKE 85
           ++  A  +GAN I+  EL     F  ++F  +A+ + F++   P    P +  + E A E
Sbjct: 31  MLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMP---GPVVRPLFEKAAE 87

Query: 86  LGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EK 133
           LG+   + +     E      +N+  ++D  G  +G YRK H+P    Y+        EK
Sbjct: 88  LGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK 147

Query: 134 FYFNPGDTGFKV 145
            YF PGD GF V
Sbjct: 148 RYFEPGDLGFPV 159

The enzyme catalyzes the hydrolysis of N-carbamoyl-D-amino acids to the corresponding which are useful intermediates in the preparation of beta-lactam antibiotics. Industrial production of beta-lactam antibiotics is now being developed using this enzyme.

Agrobacterium sp. (strain KNK712) (taxid: 252128)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 7

>sp|Q6INI7|NIT2B_XENLA Omega-amidase NIT2-B OS=Xenopus laevis GN=nit2b PE=2 SV=1

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 11/137 (8%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           +S +QF  +   S NL  A +L++ A  KGA I+ + E F   Y  +     F + A+  
Sbjct: 6   LSLVQFLVSPVKSDNLNKACKLIKEAAQKGAQIVALPECFNSPYGTKY----FPEYAEKI 61

Query: 71  KDHPTILKMQELAKELGV-VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDG 127
               T L + ++AKE G+ ++  S  EE +   YN+ A+   DG+ L  +RK H+   D 
Sbjct: 62  PGESTEL-LSQVAKECGIYLIGGSIPEEDSGKFYNTCAVFGPDGTLLVKHRKIHLFDIDV 120

Query: 128 PG---YQEKFYFNPGDT 141
           PG   +QE    +PGD+
Sbjct: 121 PGKIRFQESETLSPGDS 137

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9X0Y0|NADE2_THEMA Probable glutamine-dependent NAD(+) synthetase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=nadE2 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 10/138 (7%)

Query: 5   KRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELF-EGYYFCQAQREDF 63
           KR  V ++ L      D   NL  A   +R A  +G+++++  ELF  GY       ED 
Sbjct: 2   KRLRVTLAQLN-PTLGDFEGNLKKAIEALRVAEDRGSDLLVFPELFLPGY-----PPEDL 55

Query: 64  FQRAKPYKDHPTIL-KMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKS 122
             R    +++   L K  +  + LGV + + F +   +A YN+ A++  DG  LG+YRK 
Sbjct: 56  MLRLSFLRENRKYLQKFAQHTRNLGVTVLMGFIDSDEDA-YNAAAVV-KDGEILGVYRKI 113

Query: 123 HIPDGPGYQEKFYFNPGD 140
            +P+   + E+ YF PG+
Sbjct: 114 SLPNYGVFDERRYFKPGE 131

Can use both glutamine or ammonia as a nitrogen source.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 1

>sp|Q28IE5|NIT2_XENTR Omega-amidase NIT2 OS=Xenopus tropicalis GN=nit2 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 11/137 (8%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           +S +QF  +   S NL  A +L++ A  KGA I+ + E F   Y  +     +F      
Sbjct: 6   LSLVQFLVSPVKSENLNRACKLIKEAAQKGAQIVALPECFNSPYGTK-----YFPEYAEK 60

Query: 71  KDHPTILKMQELAKELGV-VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDG 127
               +  ++ ++AKE G+ ++  S  EE +   YN+ A+   DG+ L  +RK H+   D 
Sbjct: 61  IPGESTERLSQVAKECGIYLIGGSIPEEDSGKLYNTCAVFGPDGTLLVKHRKIHLFDIDV 120

Query: 128 PG---YQEKFYFNPGDT 141
           PG   +QE    +PGD+
Sbjct: 121 PGKIRFQESETLSPGDS 137

Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively.

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
224131816	301	predicted protein [Populus trichocarpa]	0.732	0.481	0.917	6e-74
358248586	299	uncharacterized protein LOC100787298 [Gl	0.722	0.478	0.896	8e-72
18401429	299	N-carbamoylputrescine amidase [Arabidops	0.722	0.478	0.874	3e-71
356543606	299	PREDICTED: N-carbamoylputrescine amidase	0.722	0.478	0.889	3e-71
388494892	219	unknown [Medicago truncatula]	0.732	0.662	0.868	4e-71
357453113	301	N-carbamoylputrescine amidase [Medicago	0.732	0.481	0.868	5e-71
356550099	299	PREDICTED: N-carbamoylputrescine amidase	0.722	0.478	0.889	8e-71
388497486	300	unknown [Lotus japonicus]	0.727	0.48	0.875	1e-70
449492828	311	PREDICTED: N-carbamoylputrescine amidase	0.707	0.450	0.892	2e-70
449443458	300	PREDICTED: N-carbamoylputrescine amidase	0.707	0.466	0.892	3e-70

>gi|224131816|ref|XP_002328115.1| predicted protein [Populus trichocarpa] gi|118489609|gb|ABK96606.1| unknown [Populus trichocarpa x Populus deltoides] gi|222837630|gb|EEE75995.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (721), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 133/145 (91%), Positives = 140/145 (96%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           MEKGK REVVVSALQFACTDDV+ NLATAERLVRAAH KG+NIILIQELFEGYYFCQAQR
Sbjct: 1   MEKGKGREVVVSALQFACTDDVAANLATAERLVRAAHKKGSNIILIQELFEGYYFCQAQR 60

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
           EDFFQRAKPYK HPTIL MQ+LAKELGVV+PVSFFEEANNAHYNSIA+IDADG+DLGLYR
Sbjct: 61  EDFFQRAKPYKGHPTILSMQKLAKELGVVIPVSFFEEANNAHYNSIAMIDADGADLGLYR 120

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKV 145
           KSHIPDGPGYQEKFYFNPGDTGF+V
Sbjct: 121 KSHIPDGPGYQEKFYFNPGDTGFRV 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248586|ref|NP_001240162.1| uncharacterized protein LOC100787298 [Glycine max] gi|255647785|gb|ACU24353.1| unknown [Glycine max]

 Score =  275 bits (703), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 130/145 (89%), Positives = 140/145 (96%), Gaps = 2/145 (1%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           MEKG  R VVVSALQFACTDD+STN+ATAERLVRAAH +GANIILIQELFEGYYFCQAQR
Sbjct: 1   MEKG--RTVVVSALQFACTDDISTNVATAERLVRAAHKQGANIILIQELFEGYYFCQAQR 58

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
           EDF QRAKP+KDHPTIL+MQ+LAKELGVV+PVSFFEEANNAHYNSIAIIDADG+DLG+YR
Sbjct: 59  EDFIQRAKPHKDHPTILRMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGIYR 118

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKV 145
           KSHIPDGPGY+EKFYFNPGDTGFKV
Sbjct: 119 KSHIPDGPGYEEKFYFNPGDTGFKV 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401429|ref|NP_565650.1| N-carbamoylputrescine amidase [Arabidopsis thaliana] gi|20197650|gb|AAD15597.2| putative nitrilase [Arabidopsis thaliana] gi|21554187|gb|AAM63266.1| putative nitrilase [Arabidopsis thaliana] gi|222424030|dbj|BAH19976.1| AT2G27450 [Arabidopsis thaliana] gi|330252903|gb|AEC07997.1| N-carbamoylputrescine amidase [Arabidopsis thaliana]

 Score =  273 bits (698), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 125/143 (87%), Positives = 138/143 (96%)

Query: 3   KGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRED 62
           +G+RREVVVS+LQFAC+DD+STN+A AERLVR AH KGANIILIQELFEGYYFCQAQRED
Sbjct: 4   EGRRREVVVSSLQFACSDDISTNVAAAERLVREAHAKGANIILIQELFEGYYFCQAQRED 63

Query: 63  FFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKS 122
           FF+RAKPYK+HPTI +MQ+LAKELGVV+PVSFFEEAN AHYNSIAIIDADG+DLG+YRKS
Sbjct: 64  FFKRAKPYKNHPTIARMQKLAKELGVVIPVSFFEEANTAHYNSIAIIDADGTDLGIYRKS 123

Query: 123 HIPDGPGYQEKFYFNPGDTGFKV 145
           HIPDGPGYQEKFYFNPGDTGFKV
Sbjct: 124 HIPDGPGYQEKFYFNPGDTGFKV 146

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543606|ref|XP_003540251.1| PREDICTED: N-carbamoylputrescine amidase-like [Glycine max]

 Score =  273 bits (697), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 129/145 (88%), Positives = 140/145 (96%), Gaps = 2/145 (1%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           MEKG  R VVVSALQFACTDDVSTN+ATAERL+RAAH +GANIILIQELFEGYYFCQAQR
Sbjct: 1   MEKG--RTVVVSALQFACTDDVSTNIATAERLIRAAHKQGANIILIQELFEGYYFCQAQR 58

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
            DFFQRAKP+KDHPTIL+MQ+LAKELGVV+PVSFFEEANNAHYNSIAIID+DG+DLG+YR
Sbjct: 59  VDFFQRAKPHKDHPTILRMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDSDGTDLGIYR 118

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKV 145
           KSHIPDGPGY+EKFYFNPGDTGFKV
Sbjct: 119 KSHIPDGPGYEEKFYFNPGDTGFKV 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494892|gb|AFK35512.1| unknown [Medicago truncatula]

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 126/145 (86%), Positives = 139/145 (95%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           M + K R+VVVSALQFACTDDVSTN+ TAERLVRAAH +GANI+LIQELFEGYYFCQAQR
Sbjct: 1   MAEDKGRKVVVSALQFACTDDVSTNVTTAERLVRAAHKQGANIVLIQELFEGYYFCQAQR 60

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
           EDF QRAKPYKDHPTI+++Q+LAKELGVV+PVSFFEEANNAHYNSIAIIDADG+DLG+YR
Sbjct: 61  EDFIQRAKPYKDHPTIMRLQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGIYR 120

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKV 145
           KSHIPDGPGY+EKFYFNPGDTGFKV
Sbjct: 121 KSHIPDGPGYEEKFYFNPGDTGFKV 145

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453113|ref|XP_003596833.1| N-carbamoylputrescine amidase [Medicago truncatula] gi|355485881|gb|AES67084.1| N-carbamoylputrescine amidase [Medicago truncatula]

 Score =  272 bits (696), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 126/145 (86%), Positives = 139/145 (95%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           M + K R+VVVSALQFACTDDVSTN+ TAERLVRAAH +GANI+LIQELFEGYYFCQAQR
Sbjct: 1   MAEDKGRKVVVSALQFACTDDVSTNVTTAERLVRAAHKQGANIVLIQELFEGYYFCQAQR 60

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
           EDF QRAKPYKDHPTI+++Q+LAKELGVV+PVSFFEEANNAHYNSIAIIDADG+DLG+YR
Sbjct: 61  EDFIQRAKPYKDHPTIMRLQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGIYR 120

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKV 145
           KSHIPDGPGY+EKFYFNPGDTGFKV
Sbjct: 121 KSHIPDGPGYEEKFYFNPGDTGFKV 145

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550099|ref|XP_003543427.1| PREDICTED: N-carbamoylputrescine amidase-like [Glycine max]

 Score =  271 bits (694), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 129/145 (88%), Positives = 139/145 (95%), Gaps = 2/145 (1%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           MEKG  R VVVSALQFACTDDVSTN+ATAERLVRAAH +GANIILIQELFEGYYFCQAQR
Sbjct: 1   MEKG--RTVVVSALQFACTDDVSTNVATAERLVRAAHKQGANIILIQELFEGYYFCQAQR 58

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
           E+F QRAKP+KDHPTIL+MQ+LAKELGVV+PVSFFEEANNAHYNS AIIDADG+DLG+YR
Sbjct: 59  EEFIQRAKPHKDHPTILRMQKLAKELGVVIPVSFFEEANNAHYNSTAIIDADGTDLGIYR 118

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKV 145
           KSHIPDGPGY+EKFYFNPGDTGFKV
Sbjct: 119 KSHIPDGPGYEEKFYFNPGDTGFKV 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497486|gb|AFK36809.1| unknown [Lotus japonicus]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/145 (87%), Positives = 139/145 (95%), Gaps = 1/145 (0%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           MEK K REV+VSALQF+CTDDVSTN+ATAERLVRAAH KGANI+LIQELFEG+YFCQAQR
Sbjct: 1   MEK-KGREVIVSALQFSCTDDVSTNVATAERLVRAAHSKGANIVLIQELFEGHYFCQAQR 59

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
           EDFF RAKPY  HPTI++MQ+LAKELGVV+PVSFFEEANNAHYNSIAIIDADG+DLG+YR
Sbjct: 60  EDFFHRAKPYNGHPTIMRMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGIYR 119

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKV 145
           KSHIPDGPGY+EKFYFNPGDTGFKV
Sbjct: 120 KSHIPDGPGYEEKFYFNPGDTGFKV 144

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492828|ref|XP_004159114.1| PREDICTED: N-carbamoylputrescine amidase-like [Cucumis sativus]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 125/140 (89%), Positives = 134/140 (95%)

Query: 6   RREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQ 65
           R+ V VSA+QFACTD++STN+ TAERLVR+AH KGANIILIQELFEGYYFCQAQREDF Q
Sbjct: 5   RKAVAVSAMQFACTDEISTNVNTAERLVRSAHAKGANIILIQELFEGYYFCQAQREDFIQ 64

Query: 66  RAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIP 125
           RAKPYK HPTIL+MQ+LAKELGVV+PVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIP
Sbjct: 65  RAKPYKGHPTILRMQQLAKELGVVIPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIP 124

Query: 126 DGPGYQEKFYFNPGDTGFKV 145
           DGPGYQEKFYFNPGDTGFKV
Sbjct: 125 DGPGYQEKFYFNPGDTGFKV 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443458|ref|XP_004139494.1| PREDICTED: N-carbamoylputrescine amidase-like [Cucumis sativus]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 125/140 (89%), Positives = 134/140 (95%)

Query: 6   RREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQ 65
           R+ V VSA+QFACTD++STN+ TAERLVR+AH KGANIILIQELFEGYYFCQAQREDF Q
Sbjct: 5   RKAVAVSAMQFACTDEISTNVNTAERLVRSAHAKGANIILIQELFEGYYFCQAQREDFIQ 64

Query: 66  RAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIP 125
           RAKPYK HPTIL+MQ+LAKELGVV+PVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIP
Sbjct: 65  RAKPYKGHPTILRMQQLAKELGVVIPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIP 124

Query: 126 DGPGYQEKFYFNPGDTGFKV 145
           DGPGYQEKFYFNPGDTGFKV
Sbjct: 125 DGPGYQEKFYFNPGDTGFKV 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2038623	326	NLP1 "nitrilase-like protein 1	0.575	0.349	0.903	1.6e-65
UNIPROTKB|Q48Q56	292	PSPPH_0152 "Carbon-nitrogen hy	0.702	0.476	0.625	8.4e-42
TIGR_CMR|GSU_1027	294	GSU_1027 "glycosyl hydrolase,	0.671	0.452	0.444	9.7e-25
TIGR_CMR|CJE_1025	290	CJE_1025 "hydrolase, carbon-ni	0.570	0.389	0.394	4.6e-18
UNIPROTKB|A7MBE8	384	UPB1 "Uncharacterized protein"	0.580	0.299	0.330	4.9e-09
FB|FBgn0037513	386	pyd3 "pyd3" [Drosophila melano	0.575	0.295	0.305	6.3e-09
TAIR|locus:2173348	408	BETA-UP "AT5G64370" [Arabidops	0.560	0.272	0.336	2.5e-08
ASPGD|ASPL0000032005	627	AN8417 [Emericella nidulans (t	0.691	0.218	0.322	6.2e-08
UNIPROTKB|E2QT84	384	UPB1 "Uncharacterized protein"	0.580	0.299	0.322	1.5e-07
ZFIN|ZDB-GENE-030131-1380	384	upb1 "ureidopropionase, beta"	0.575	0.296	0.305	1.5e-07

TAIR|locus:2038623 NLP1 "nitrilase-like protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
 Identities = 103/114 (90%), Positives = 110/114 (96%)

Query:    32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMP 91
             LVR AH KGANIILIQELFEGYYFCQAQREDFF+RAKPYK+HPTI +MQ+LAKELGVV+P
Sbjct:    60 LVREAHAKGANIILIQELFEGYYFCQAQREDFFKRAKPYKNHPTIARMQKLAKELGVVIP 119

Query:    92 VSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKV 145
             VSFFEEAN AHYNSIAIIDADG+DLG+YRKSHIPDGPGYQEKFYFNPGDTGFKV
Sbjct:   120 VSFFEEANTAHYNSIAIIDADGTDLGIYRKSHIPDGPGYQEKFYFNPGDTGFKV 173

GO:0006596 "polyamine biosynthetic process" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA;ISS

GO:0050126 "N-carbamoylputrescine amidase activity" evidence=IEA;IDA

GO:0009446 "putrescine biosynthetic process" evidence=TAS

UNIPROTKB|Q48Q56 PSPPH_0152 "Carbon-nitrogen hydrolase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 87/139 (62%), Positives = 104/139 (74%)

Query:     7 REVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQR 66
             R V V+A Q AC+ D+  N+ TAE+LVR A  KGA IILIQELFE  YFCQ    D+ Q 
Sbjct:     3 RIVSVAATQMACSWDLEANIETAEKLVREAAAKGAQIILIQELFETPYFCQKPNPDYLQL 62

Query:    67 AKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPD 126
             A   + +  I   Q+LAKEL VV+P+SFFE A  A +N+IAIIDADG++LG+YRKSHIPD
Sbjct:    63 ATTIESNVAIKHFQKLAKELQVVLPISFFELAGRARFNTIAIIDADGTNLGIYRKSHIPD 122

Query:   127 GPGYQEKFYFNPGDTGFKV 145
             GPGY EK+YFNPGDTGFKV
Sbjct:   123 GPGYHEKYYFNPGDTGFKV 141

GO:0005737 "cytoplasm" evidence=ISS

GO:0008295 "spermidine biosynthetic process" evidence=ISS

GO:0009446 "putrescine biosynthetic process" evidence=ISS

GO:0050126 "N-carbamoylputrescine amidase activity" evidence=ISS

TIGR_CMR|GSU_1027 GSU_1027 "glycosyl hydrolase, family 10" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 60/135 (44%), Positives = 80/135 (59%)

Query:    11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
             V+ +Q +CT D   NLA +   +R A   GA ++++QEL  G YFCQ +    F  A+P 
Sbjct:     6 VALVQQSCTADKDLNLAKSIENIRKASVLGAKLVVLQELHTGPYFCQNEDTAHFDLAEPI 65

Query:    71 KDHPTILKMQELAKELGVVMPVSFFEE-ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPG 129
                PT   +  +AKE GVV+  S FE  A   ++N+  + + DGS  G YRK HIPD PG
Sbjct:    66 PG-PTTELLGGVAKEFGVVLVSSLFERRAPGLYHNTAVVFEKDGSMAGTYRKMHIPDDPG 124

Query:   130 YQEKFYFNPGDTGFK 144
             Y EKFYF PGD GF+
Sbjct:   125 YYEKFYFTPGDLGFE 139

GO:0006807 "nitrogen compound metabolic process" evidence=ISS

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=ISS

TIGR_CMR|CJE_1025 CJE_1025 "hydrolase, carbon-nitrogen family" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 47/119 (39%), Positives = 70/119 (58%)

Query:    28 TAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY-KDHPTILKMQELAKEL 86
             T E  +  A  +GA ++ + EL +  YFCQ++  DFF  A  Y KD   +     +A++ 
Sbjct:    21 TCE-FIEEASKQGAELVCLGELHQSEYFCQSENVDFFDYANDYEKD---VKFWANIARKN 76

Query:    87 GVVMPVSFFEEANNAHYNSIAII-DADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFK 144
              +V+  S FE+ +   Y++ A++ + DGS  G YRK HIPD P + EKFYF PGD GF+
Sbjct:    77 QIVLIASLFEKRSAGLYHNTAVVFEKDGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFE 135

GO:0008152 "metabolic process" evidence=ISS

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=ISS

UNIPROTKB|A7MBE8 UPB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 4.9e-09, P = 4.9e-09
 Identities = 40/121 (33%), Positives = 65/121 (53%)

Query:    30 ERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88
             E +V  A   G NII  QE +   + FC  ++  + + A+  +D PTI   QELA++ G+
Sbjct:   101 EAVVEVAAMCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTIKFCQELARKHGM 160

Query:    89 VMPVSFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFK 144
             V+ VS   E ++ H    +N+  ++ + G+ LG  RK+HIP    + E  Y+  G+ G  
Sbjct:   161 VV-VSPVLERDSDHGDVLWNTAVVVASSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHP 219

Query:   145 V 145
             V
Sbjct:   220 V 220

GO:0003837 "beta-ureidopropionase activity" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

FB|FBgn0037513 pyd3 "pyd3" [Drosophila melanogaster (taxid:7227)]

 Score = 140 (54.3 bits), Expect = 6.3e-09, P = 6.3e-09
 Identities = 36/118 (30%), Positives = 60/118 (50%)

Query:    32 LVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90
             +++AA   G NI+  QE +   + FC  ++  + + A+  ++ PT   + ELAK   +V+
Sbjct:   104 MIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVI 163

Query:    91 PVSFFE---EANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKV 145
               S  E   E     +N+  +I   G  LG +RK+HIP    + E  Y+  G+TG  V
Sbjct:   164 IHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPV 221

GO:0003837 "beta-ureidopropionase activity" evidence=ISS;IDA;NAS

GO:0006207 "'de novo' pyrimidine nucleobase biosynthetic process" evidence=IGI

GO:0006208 "pyrimidine nucleobase catabolic process" evidence=IC

TAIR|locus:2173348 BETA-UP "AT5G64370" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 40/119 (33%), Positives = 64/119 (53%)

Query:    32 LVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90
             ++ AA   G NI+ +QE +   + FC  +R  + + A+P     T   +QELAK+  +V+
Sbjct:   121 IIDAAGVAGVNILCLQEAWTMPFAFCTRERR-WCEFAEPVDGESTKF-LQELAKKYNMVI 178

Query:    91 PVSFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKV 145
              VS   E +  H    +N+  II  +G+ +G +RK+HIP    + E  Y+  GDTG  V
Sbjct:   179 -VSPILERDIDHGEVLWNTAVIIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGDTGHPV 236

GO:0003837 "beta-ureidopropionase activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006807 "nitrogen compound metabolic process" evidence=IEA;ISS

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0006212 "uracil catabolic process" evidence=IMP

GO:0043562 "cellular response to nitrogen levels" evidence=IEP

ASPGD|ASPL0000032005 AN8417 [Emericella nidulans (taxid:162425)]

 Score = 134 (52.2 bits), Expect = 6.2e-08, P = 6.2e-08
 Identities = 51/158 (32%), Positives = 70/158 (44%)

Query:     7 REVVVSALQFACT---DDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYFC-Q 57
             R V ++A Q   T   DD +  LA    L+R A  +GA ++L  E+     F  Y    +
Sbjct:     3 RTVRLAAAQMGTTNKWDDRTDTLARMIALLREAASQGAQVVLFPEIAFTTFFPRYLITDE 62

Query:    58 AQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNA-HYNSIAIIDADGSD- 115
              + E +F+     +  P    + + A ELGV + V F E   +  HYNS     A   D 
Sbjct:    63 TELESWFEHGD-IRTAPNTKALFDAAHELGVDICVGFAEATESGEHYNSCVYYHAATGDI 121

Query:   116 LGLYRKSHIPDG--P-------GYQEKFYFNPGDTGFK 144
             L  YRK H+P    P          EK YF PG+ GFK
Sbjct:   122 LSRYRKIHLPGDFEPLPDPTAVNQLEKRYFLPGNLGFK 159

GO:0036361 "racemase activity, acting on amino acids and derivatives" evidence=IEA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2QT84 UPB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 130 (50.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 39/121 (32%), Positives = 61/121 (50%)

Query:    30 ERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88
             E +V  A   G NII  QE +   + FC  ++  + + A+  +D PT    Q+LAK+  +
Sbjct:   101 EAIVEVAAVCGVNIICFQEAWTMPFAFCTREKLPWTEFAESAEDGPTTRFCQKLAKKHDM 160

Query:    89 VMPVSFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFK 144
             V+ VS   E +  H    +N+  +I   G+ LG  RK+HIP    + E  Y+  G+ G  
Sbjct:   161 VV-VSPILERDREHGDILWNTAVVISNSGAVLGKTRKNHIPRVGDFNESTYYMEGNLGHP 219

Query:   145 V 145
             V
Sbjct:   220 V 220

GO:0003837 "beta-ureidopropionase activity" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

ZFIN|ZDB-GENE-030131-1380 upb1 "ureidopropionase, beta" [Danio rerio (taxid:7955)]

 Score = 130 (50.8 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 36/118 (30%), Positives = 62/118 (52%)

Query:    32 LVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE--LGV 88
             +V  A   G NI+  QE +   + FC  +RE + + A+  +D  T     +LAK+  + V
Sbjct:   103 MVEVAAMCGVNIVCFQEAWTMPFAFCTREREPWTEFAESAEDGLTTRFCIQLAKKHNMVV 162

Query:    89 VMPVSFFEEANNAH-YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKV 145
             V P+   +E +    +N+  ++  +G+ LG  RK+HIP    + E  Y+  G+TG +V
Sbjct:   163 VSPILERDEIHGGTLWNTAVVVSNNGNVLGKTRKNHIPRVGDFNESTYYMEGNTGHRV 220

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93XI4	AGUB_ORYSJ	3, ., 5, ., 1, ., 5, 3	0.7887	0.7171	0.4717	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.1.53	LOW CONFIDENCE prediction!
3rd Layer	3.5.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
PLN02747	296	PLN02747, PLN02747, N-carbamolyputrescine amidase	1e-104
TIGR03381	279	TIGR03381, agmatine_aguB, N-carbamoylputrescine am	1e-92
cd07573	284	cd07573, CPA, N-carbamoylputrescine amidohydrolase	3e-84
cd07568	287	cd07568, ML_beta-AS_like, mammalian-like beta-alan	8e-35
cd07197	253	cd07197, nitrilase, Nitrilase superfamily, includi	2e-30
COG0388	274	COG0388, COG0388, Predicted amidohydrolase [Genera	4e-26
pfam00795	172	pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase	9e-24
cd07572	265	cd07572, nit, Nit1, Nit 2, and related proteins, a	1e-21
cd07577	259	cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642	4e-21
cd07580	268	cd07580, nitrilase_2, Uncharacterized subgroup of	2e-20
cd07581	255	cd07581, nitrilase_3, Uncharacterized subgroup of	2e-18
cd07576	254	cd07576, R-amidase_like, Pseudomonas sp	1e-17
PLN02798	286	PLN02798, PLN02798, nitrilase	1e-15
cd07569	302	cd07569, DCase, N-carbamyl-D-amino acid amidohydro	1e-14
cd07585	261	cd07585, nitrilase_7, Uncharacterized subgroup of	2e-14
cd07584	258	cd07584, nitrilase_6, Uncharacterized subgroup of	3e-14
cd07583	253	cd07583, nitrilase_5, Uncharacterized subgroup of	3e-13
cd07579	279	cd07579, nitrilase_1_R2, Second nitrilase domain o	4e-11
cd07586	269	cd07586, nitrilase_8, Uncharacterized subgroup of	2e-10
cd07587	363	cd07587, ML_beta-AS, mammalian-like beta-alanine s	5e-10
PRK13981	540	PRK13981, PRK13981, NAD synthetase; Provisional	3e-08
cd07564	297	cd07564, nitrilases_CHs, Nitrilases, cyanide hydra	3e-08
PLN00202	405	PLN00202, PLN00202, beta-ureidopropionase	2e-06
cd07570	261	cd07570, GAT_Gln-NAD-synth, Glutamine aminotransfe	3e-06
cd07566	295	cd07566, ScNTA1_like, Saccharomyces cerevisiae N-t	1e-04
PRK02628	679	PRK02628, nadE, NAD synthetase; Reviewed	9e-04
TIGR04048	301	TIGR04048, nitrile_sll0784, putative nitrilase, sl	0.001
cd07571	270	cd07571, ALP_N-acyl_transferase, Apolipoprotein N-	0.001
cd07574	280	cd07574, nitrilase_Rim1_like, Uncharacterized subg	0.002

>gnl|CDD|215398 PLN02747, PLN02747, N-carbamolyputrescine amidase

 Score =  300 bits (770), Expect = e-104
 Identities = 122/143 (85%), Positives = 132/143 (92%)

Query: 3   KGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRED 62
            G  R+VVV+ALQFAC+DD + N+  AERLVR AH KGANIILIQELFEGYYFCQAQRED
Sbjct: 1   MGMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQRED 60

Query: 63  FFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKS 122
           FFQRAKPY+ HPTI +MQ+LAKELGVV+PVSFFEEANNAHYNSIAIIDADG+DLGLYRKS
Sbjct: 61  FFQRAKPYEGHPTIARMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKS 120

Query: 123 HIPDGPGYQEKFYFNPGDTGFKV 145
           HIPDGPGYQEKFYFNPGDTGFKV
Sbjct: 121 HIPDGPGYQEKFYFNPGDTGFKV 143

Length = 296

>gnl|CDD|188311 TIGR03381, agmatine_aguB, N-carbamoylputrescine amidase

 Score =  271 bits (696), Expect = 1e-92
 Identities = 99/141 (70%), Positives = 116/141 (82%), Gaps = 2/141 (1%)

Query: 9   VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAK 68
           V V+ALQ AC+DDV TN+A AERLVR A  +GA IIL+ ELFEG YFC+ Q ED+F  A+
Sbjct: 1   VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQ 60

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGP 128
           P + HP I + Q LAKELGVV+PVSFFE+A NA+YNS+A+IDADGS LG+YRKSHIPDGP
Sbjct: 61  PVEGHPAIKRFQALAKELGVVIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGP 120

Query: 129 GYQEKFYFNPGDTGFKVGAWN 149
           GYQEKFYF PGDTGFKV  W+
Sbjct: 121 GYQEKFYFRPGDTGFKV--WD 139

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one [Central intermediary metabolism, Polyamine biosynthesis]. Length = 279

>gnl|CDD|143597 cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

 Score =  250 bits (641), Expect = 3e-84
 Identities = 83/138 (60%), Positives = 99/138 (71%), Gaps = 1/138 (0%)

Query: 9   VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAK 68
           V V+ +Q AC++D   NLA AE LVR A  +GA I+ +QELFE  YFCQ + ED+F  A+
Sbjct: 1   VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAE 60

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANN-AHYNSIAIIDADGSDLGLYRKSHIPDG 127
           P    PT  + Q LAKELGVV+PVS FE+  N  +YNS  +IDADGS LG+YRK HIPD 
Sbjct: 61  PPIPGPTTARFQALAKELGVVIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDD 120

Query: 128 PGYQEKFYFNPGDTGFKV 145
           PGY EKFYF PGDTGFKV
Sbjct: 121 PGYYEKFYFTPGDTGFKV 138

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer. Length = 284

>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

 Score =  123 bits (311), Expect = 8e-35
 Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 1/117 (0%)

Query: 30  ERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV 89
             ++R A   GA I+ +QE+F G YFC  Q   +++ A+   + PT  +   LAKE  +V
Sbjct: 33  VTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKRFAALAKEYNMV 92

Query: 90  MPVSFFE-EANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKV 145
           + +  +E E     YN+ A+IDADG+ LG YRK+HIP   G+ EKFYF PG+ G+ V
Sbjct: 93  LILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGYPV 149

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily. Length = 287

>gnl|CDD|143587 cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

 Score =  112 bits (281), Expect = 2e-30
 Identities = 59/161 (36%), Positives = 86/161 (53%), Gaps = 21/161 (13%)

Query: 11  VSALQFACTD-DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKP 69
           ++A+Q A    DV  NLA A RL++ A  +GA++I++ ELF   Y  ++ +ED       
Sbjct: 1   IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDL--DLAE 58

Query: 70  YKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPG 129
             D PT+  + ELAKELG+ +     E+  +  YN+  +ID DG  +G YRK H+ D   
Sbjct: 59  ELDGPTLEALAELAKELGIYIVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFDF-- 116

Query: 130 YQEKFYFNPGDT-------GFKVGAWNNLNLNLICFFDLIF 163
             E+ YF+PGD        G K+G        LIC +DL F
Sbjct: 117 -GERRYFSPGDEFPVFDTPGGKIGL-------LIC-YDLRF 148

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy. Length = 253

>gnl|CDD|223465 COG0388, COG0388, Predicted amidohydrolase [General function prediction only]

 Score =  101 bits (252), Expect = 4e-26
 Identities = 56/158 (35%), Positives = 81/158 (51%), Gaps = 7/158 (4%)

Query: 9   VVVSALQFA-CTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRA 67
           + V+A Q A    D + NLA   RL+R A  +GA++++  ELF   Y C+     F + A
Sbjct: 3   MRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCEDD--LFLEEA 60

Query: 68  KPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDG 127
                  T+  +  LA+E GV++ V          YN+ A+ID DG  LG YRK H+ D 
Sbjct: 61  AAEAGEETLEFLAALAEEGGVII-VGGPLPEREKLYNNAALIDPDGEILGKYRKLHLFD- 118

Query: 128 PGYQEKFYFNPGDTGFKVGAWNNLNLNL-ICFFDLIFD 164
             Y+E+ +F PGD G  V   +   + L IC +DL F 
Sbjct: 119 AFYEERRFFTPGDEGVVVFETDGGKIGLLIC-YDLRFP 155

Length = 274

>gnl|CDD|216124 pfam00795, CN_hydrolase, Carbon-nitrogen hydrolase

 Score = 92.0 bits (229), Expect = 9e-24
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 19/151 (12%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQ 80
           D+  NL     L+  A  +GA+++++ ELF   Y   A                T+  + 
Sbjct: 13  DLEANLQKLLELIEEAARQGADLVVLPELFIPGYAHGATEYL---ELAEAIPGETLQFLS 69

Query: 81  ELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGD 140
            LA++ G+ +     E+     YN++ +ID DG  LG YRK H+     + E+  F PG 
Sbjct: 70  ALARKNGITVVAGIPEKDGGGLYNTLVLIDPDGELLGKYRKRHLVPVGEWVERPLFGPGG 129

Query: 141 TGF--------KVGAWNNLNLNLICFFDLIF 163
             F        K+G        LIC +++ F
Sbjct: 130 ATFPVFDTPVGKLGL-------LIC-YEIRF 152

This family contains hydrolases that break carbon-nitrogen bonds. The family includes: Nitrilase EC:3.5.5.1, Aliphatic amidase EC:3.5.1.4, Biotidinase EC:3.5.1.12, Beta-ureidopropionase EC:3.5.1.6. Nitrilase-related proteins generally have a conserved E-K-C catalytic triad, and are multimeric alpha-beta-beta-alpha sandwich proteins. Length = 172

>gnl|CDD|143596 cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

 Score = 89.0 bits (222), Expect = 1e-21
 Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 32/171 (18%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           V+ +Q   T D   NLA A+ L+  A  +GA ++++ E F                A+  
Sbjct: 2   VALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPG---GTDAFKLALAEEE 58

Query: 71  KDHPTILKMQELAKELGVV-----MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSH-- 123
            D PT+  + ELAKE G+      +P    ++ +   YN+  + D DG  +  YRK H  
Sbjct: 59  GDGPTLQALSELAKEHGIWLVGGSIPER--DDDDGKVYNTSLVFDPDGELVARYRKIHLF 116

Query: 124 ---IPDGPGYQEKFYFNPGDT-------GFKVGAWNNLNLNL-ICFFDLIF 163
              +P G  Y+E     PGD          K+G        L IC +DL F
Sbjct: 117 DVDVPGGISYRESDTLTPGDEVVVVDTPFGKIG--------LGIC-YDLRF 158

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10. Length = 265

>gnl|CDD|143601 cd07577, Ph0642_like, Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 87.0 bits (216), Expect = 4e-21
 Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 13/145 (8%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKM 79
           +V  NL   E L++   G  A++I++ ELF  GY F    +E+    A+   D PT   +
Sbjct: 13  EVEKNLKKVESLIK---GVEADLIVLPELFNTGYAF--TSKEEVASLAESIPDGPTTRFL 67

Query: 80  QELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPG 139
           QELA+E G  +     E   +  YNS  ++  +G  +G+YRK+H+     Y+EK +F PG
Sbjct: 68  QELARETGAYIVAGLPERDGDKFYNSAVVVGPEG-YIGIYRKTHL----FYEEKLFFEPG 122

Query: 140 DTGFKVGAWNNLNLN-LICFFDLIF 163
           DTGF+V    ++ +  +IC FD  F
Sbjct: 123 DTGFRVFDIGDIRIGVMIC-FDWYF 146

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 259

>gnl|CDD|143604 cd07580, nitrilase_2, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 9/137 (6%)

Query: 11  VSALQFA-CTDDVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAK 68
           V+ +QF     D+  NLA +  L+R A   GAN++++ EL   GY F    R++ F  A+
Sbjct: 2   VACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVF--ESRDEAFALAE 59

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGP 128
              D  +     ELA ELG+ +   F E   +  YNS  ++  DG  +G YRK+H+ +  
Sbjct: 60  EVPDGASTRAWAELAAELGLYIVAGFAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN-- 116

Query: 129 GYQEKFYFNPGDTGFKV 145
             +EK  F PGD G  V
Sbjct: 117 --EEKLLFEPGDLGLPV 131

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 268

>gnl|CDD|143605 cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 79.9 bits (198), Expect = 2e-18
 Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 21/163 (12%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           V+  QFA + D   NL    RL+  A   GA++++  E     +      +D+ + A+P 
Sbjct: 1   VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARF--GDGLDDYARVAEP- 57

Query: 71  KDHPTILKMQELAKELGVVMPVSFFEEANNAH-YNSIAIIDADGSDLGLYRKSHIPDGPG 129
            D P +  +  LA+ELG+ +    FE A +   YN++ ++  DG  + +YRK H+ D  G
Sbjct: 58  LDGPFVSALARLARELGITVVAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFG 117

Query: 130 YQEKFYFNPGDT---------GFKVGAWNNLNLNLICFFDLIF 163
           ++E     PGD          G KVG          C +DL F
Sbjct: 118 FRESDTVAPGDELPPVVFVVGGVKVGL-------ATC-YDLRF 152

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 255

>gnl|CDD|143600 cd07576, R-amidase_like, Pseudomonas sp

 Score = 78.0 bits (193), Expect = 1e-17
 Identities = 51/167 (30%), Positives = 79/167 (47%), Gaps = 29/167 (17%)

Query: 11  VSALQFACTD-DVSTNLATAERLVRAAHGKGANIILIQELF-EGYYFCQAQREDFFQRAK 68
           ++  Q    D DV+ NLA  +     A   GA++++  ELF  GY       +   + A+
Sbjct: 2   LALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGY----NIGDAVARLAE 57

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGP 128
           P  D P +  ++ +A+  G+ + V + E A  A YN+  +ID DG+ L  YRK+H+    
Sbjct: 58  P-ADGPALQALRAIARRHGIAIVVGYPERAGGAVYNAAVLIDEDGTVLANYRKTHL---F 113

Query: 129 GYQEKFYFNPGDT-------GFKVGAWNNLNLNLICFFDLIFDDDFP 168
           G  E+  F PGD        G +VG        LIC     +D +FP
Sbjct: 114 GDSERAAFTPGDRFPVVELRGLRVGL-------LIC-----YDVEFP 148

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Native R-amidase however appears to be a monomer. Length = 254

>gnl|CDD|215428 PLN02798, PLN02798, nitrilase

 Score = 72.9 bits (179), Expect = 1e-15
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 12/139 (8%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           V+  Q   T+D++ N AT  RL + A   GA ++ + E F    F   +  +    A+P 
Sbjct: 13  VAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFS---FIGDKDGESLAIAEPL 69

Query: 71  KDHPTILKMQELAKELGVVMPVSFFEE--ANNAH-YNSIAIIDADGSDLGLYRKSH---- 123
            D P + + + LA+E G+ + +  F+E   +++H YN+  +ID  G     YRK H    
Sbjct: 70  -DGPIMQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDV 128

Query: 124 -IPDGPGYQEKFYFNPGDT 141
            +P GP  +E  +  PG T
Sbjct: 129 DVPGGPVLKESSFTAPGKT 147

Length = 286

>gnl|CDD|143593 cd07569, DCase, N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

 Score = 70.0 bits (172), Expect = 1e-14
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 24/160 (15%)

Query: 7   REVVVSALQFACTDDVSTNLATAERLV---RAAHGKGANIILIQEL-----FEGYYFC-Q 57
           R+V+++A Q        T  +   RL+     A  +GA +++  EL     F  +YF  +
Sbjct: 2   RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDE 61

Query: 58  AQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNA----HYNSIAIIDADG 113
           A+ + FF+   P   +P    + + AKELG+   + + E   +      +N+  ++D  G
Sbjct: 62  AELDSFFETEMP---NPETQPLFDRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSG 118

Query: 114 SDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKV 145
             +G YRK H+P     +        EK YF PGD GF V
Sbjct: 119 KIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLGFPV 158

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers. Length = 302

>gnl|CDD|143609 cd07585, nitrilase_7, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 12/132 (9%)

Query: 11  VSALQFACTD-DVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAK 68
           ++ +QF     D + NLA   R  R A  +GA ++   E+   GY   +A       R  
Sbjct: 2   IALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRA-----LSREA 56

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGP 128
              D P+   + +LA+  G+ +     E+A +  YN+  +   DG  +  YRK H     
Sbjct: 57  EVPDGPSTQALSDLARRYGLTILAGLIEKAGDRPYNTYLVCLPDGL-VHRYRKLH----L 111

Query: 129 GYQEKFYFNPGD 140
             +E  Y   GD
Sbjct: 112 FRREHPYIAAGD 123

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 261

>gnl|CDD|143608 cd07584, nitrilase_6, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 56/169 (33%), Positives = 77/169 (45%), Gaps = 29/169 (17%)

Query: 11  VSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKP 69
           V+ +Q      DV  NL  A  L + A  +GA++I   EL    Y         ++ ++P
Sbjct: 2   VALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEP 61

Query: 70  YKDHPTILKMQELAKELGVVMPVSFFEEANNAH--YNSIAIIDADGSDLGLYRKSHIPDG 127
             D PT+    ELAKELGV +   F E+       YNS  +ID +G  LG+YRK H+   
Sbjct: 62  -IDGPTVRLFSELAKELGVYIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHL--- 117

Query: 128 PGYQ-EKFYFNPG------DTGF-KVGAWNNLNLNLICFFDLIFDDDFP 168
             +  EK YF  G      DT F K+G        +IC     +D  FP
Sbjct: 118 --WGLEKQYFREGEQYPVFDTPFGKIGV-------MIC-----YDMGFP 152

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 258

>gnl|CDD|143607 cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 65.6 bits (161), Expect = 3e-13
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 28/164 (17%)

Query: 11  VSALQFA-CTDDVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAK 68
           ++ +Q      D   N+   E L+  A   GA++I++ E++  GY+      +D ++ A 
Sbjct: 2   IALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYF-----LDDLYELAD 56

Query: 69  PYKDHPTILKMQELAKELGVVMPV--SFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPD 126
                 T+  + ELAK+ GV + V  S  E+     YN+  +ID DG  +  YRK H   
Sbjct: 57  EDGG-ETVSFLSELAKKHGVNI-VAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIH-LF 113

Query: 127 GPGYQEKFYFNPGDT-------GFKVGAWNNLNLNLICFFDLIF 163
           G    E  Y   GD        G KVG         IC +DL F
Sbjct: 114 GLM-GEDKYLTAGDELEVFELDGGKVGL-------FIC-YDLRF 148

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 253

>gnl|CDD|143603 cd07579, nitrilase_1_R2, Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 60.3 bits (146), Expect = 4e-11
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 14/132 (10%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAKP 69
           ++  QFA T D++ NLAT +RL   A   GA +++  EL   G         D    A+ 
Sbjct: 2   IAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLD-------DPASEAES 54

Query: 70  YKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPG 129
               P +  ++ LA+ L + +   F E   +  YNS  ++  +G  +G YRK+H+     
Sbjct: 55  -DTGPAVSALRRLARRLRLYLVAGFAEADGDGLYNSAVLVGPEGL-VGTYRKTHL----I 108

Query: 130 YQEKFYFNPGDT 141
             E+ +  PGDT
Sbjct: 109 EPERSWATPGDT 120

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 279

>gnl|CDD|143610 cd07586, nitrilase_8, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 11/133 (8%)

Query: 11  VSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAK 68
           V+  Q      DV  NL     ++  A  +GA++++  EL   GY       +  ++ A 
Sbjct: 2   VAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNL----GDLVYEVAM 57

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANNAH-YNSIAIIDADGSDLGLYRKSHIPDG 127
              D P +  + E +  + VV    F EE  +   YNS A ++ DG  + ++RK ++P  
Sbjct: 58  H-ADDPRLQALAEASGGICVV--FGFVEEGRDGRFYNSAAYLE-DGRVVHVHRKVYLPTY 113

Query: 128 PGYQEKFYFNPGD 140
             ++E  YF PG 
Sbjct: 114 GLFEEGRYFAPGS 126

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 269

>gnl|CDD|143611 cd07587, ML_beta-AS, mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 6/121 (4%)

Query: 30  ERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV 88
           ++++ AA   G NII  QE +   + FC  ++  + + A+  +D PT    QELAK+  +
Sbjct: 93  KKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTKFCQELAKKYNM 152

Query: 89  VMPVSFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFK 144
           V+ VS   E +  H    +N+  +I   G+ LG  RK+HIP    + E  Y+  G+TG  
Sbjct: 153 VI-VSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHP 211

Query: 145 V 145
           V
Sbjct: 212 V 212

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Beta-ASs from this subgroup are found in various oligomeric states, dimer (human), hexamer (calf liver), decamer (Arabidopsis and Zea mays), and in the case of Drosophila melanogaster beta-AS, as a homooctamer assembled as a left-handed helical turn, with the possibility of higher order oligomers formed by adding dimers at either end. Rat beta-AS changes its oligomeric state (hexamer, trimer, dodecamer) in response to allosteric effectors. Eukaryotic Saccharomyces kluyveri beta-AS belongs to a different superfamily. Length = 363

>gnl|CDD|237577 PRK13981, PRK13981, NAD synthetase; Provisional

 Score = 52.5 bits (127), Expect = 3e-08
 Identities = 39/151 (25%), Positives = 56/151 (37%), Gaps = 36/151 (23%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELF-EGYYFCQAQRED------FFQRAKPYKDH 73
           D++ N A        A   GA+++L  ELF  GY       ED      F    +     
Sbjct: 14  DIAGNAAKILAAAAEAADAGADLLLFPELFLSGY-----PPEDLLLRPAFLAACEAA--- 65

Query: 74  PTILKMQELAKEL--GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ 131
                ++ LA     G  + V          YN+ A++D  G  L  YRK  +P+   + 
Sbjct: 66  -----LERLAAATAGGPAVLVGHPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYGVFD 119

Query: 132 EKFYFNPGDT-------GFKVG------AWN 149
           EK YF PG         G ++G       WN
Sbjct: 120 EKRYFAPGPEPGVVELKGVRIGVPICEDIWN 150

Length = 540

>gnl|CDD|143588 cd07564, nitrilases_CHs, Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

 Score = 52.1 bits (126), Expect = 3e-08
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 15/105 (14%)

Query: 29  AERLVRAAHGKGANIILIQELFEGYY----FCQA---QREDFFQRAKPYK-----DHPTI 76
           A RL+  A   GA +++  E F   Y    +  A    RE F   A+ Y+     D P +
Sbjct: 22  ACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELF---ARYYENSVEVDGPEL 78

Query: 77  LKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRK 121
            ++ E A+E G+ + +   E      YN+  +ID DG  LG +RK
Sbjct: 79  ERLAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRK 123

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that NIT3 may produce IAA during the early stages of germination, and that NIT3 may produce IAA during embryo development and maturation. AthNIT4 has a strong substrate specificity for the nitrile, beta-cyano-L-alanine (Ala(CN)), an intermediate of cyanide detoxification. AthNIT4 has both a nitrilase activity and a nitrile hydratase (NHase) activity, which generate aspartic acid and asparagine respectively from Ala(CN). NHase catalyzes the hydration of nitriles to their corresponding amides. This subgroup belongs to a larger nitrilase superfamily comprised of belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 1. Length = 297

>gnl|CDD|177792 PLN00202, PLN00202, beta-ureidopropionase

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 11/134 (8%)

Query: 32  LVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM 90
           ++ AA   G NI+ +QE +   + FC  ++  + + A+P     T   +QELA++  +V+
Sbjct: 118 MIDAAGAAGVNILCLQEAWTMPFAFCTREKR-WCEFAEPVDGESTKF-LQELARKYNMVI 175

Query: 91  PVSFFEEANNAH----YNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKV- 145
            VS   E +  H    +N+  +I  +G+ +G +RK+HIP    + E  Y+  G+TG  V 
Sbjct: 176 -VSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVF 234

Query: 146 -GAWNNLNLNLICF 158
             A+  + +N IC+
Sbjct: 235 ETAFGKIAVN-ICY 247

Length = 405

>gnl|CDD|143594 cd07570, GAT_Gln-NAD-synth, Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

 Score = 45.9 bits (110), Expect = 3e-06
 Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 29/142 (20%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELF-EGYYFCQAQREDFFQRAKPYKDHPTILK- 78
           D+  N       +R A  +GA++++  EL   GY       ED   R       P  L+ 
Sbjct: 13  DLEGNAEKILEAIREAKAQGADLVVFPELSLTGY-----PPEDLLLR-------PDFLEA 60

Query: 79  ----MQELAKEL---GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ 131
               ++ELA       + + V      +   YN+ A++  +G  LG+  K  +P+   + 
Sbjct: 61  AEEALEELAAATADLDIAVVVGLPLRHDGKLYNAAAVLQ-NGKILGVVPKQLLPNYGVFD 119

Query: 132 EKFYFNPGDT-------GFKVG 146
           EK YF PGD        G ++G
Sbjct: 120 EKRYFTPGDKPDVLFFKGLRIG 141

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to classes 7 and 8. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Mycobacterium tuberculosis glutamine-dependent NAD+ synthetase forms a homooctamer. Length = 261

>gnl|CDD|143590 cd07566, ScNTA1_like, Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 19/126 (15%)

Query: 11  VSALQFAC-TDDVSTNLATAERLVRAAHG----KGANIILIQEL-FEGYYFCQAQREDFF 64
           ++ LQ       V  NL+ A  L+         K  +I+++ EL   GY F         
Sbjct: 2   IACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNF------HSL 55

Query: 65  QRAKPY----KDHPTILKMQELAKELGVVMPVSFFEEANNAH---YNSIAIIDADGSDLG 117
           +  KPY       P+    +E+AK+    + + + E+ + +    YNS  ++D +G  + 
Sbjct: 56  EHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVF 115

Query: 118 LYRKSH 123
            YRKS 
Sbjct: 116 NYRKSF 121

Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3. Length = 295

>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed

 Score = 39.1 bits (92), Expect = 9e-04
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 14/125 (11%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRED-FFQRAKPYKDHPTILKM 79
           D + N A    L R A   G  + +  EL    Y C    +D F Q          +  +
Sbjct: 26  DPAFNAARILALARRAADDGVALAVFPELSLSGYSC----DDLFLQDTLLDAVEDALATL 81

Query: 80  QELAKELGVV----MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFY 135
            E + +L  +     P+       +  YN   +I   G  LG+  KS++P+   + EK +
Sbjct: 82  VEASADLDPLLVVGAPLRV----RHRLYNCAVVI-HRGRILGVVPKSYLPNYREFYEKRW 136

Query: 136 FNPGD 140
           F PGD
Sbjct: 137 FAPGD 141

Length = 679

>gnl|CDD|188563 TIGR04048, nitrile_sll0784, putative nitrilase, sll0784 family

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 33/159 (20%)

Query: 7   REVVVSALQFACTDDVSTNLATAERLVRA---AHGKGANIILIQELFEGYYFCQAQREDF 63
           R V  +A+Q   +  + +   T  +++ A   A GKG  +I+  E F  YY        +
Sbjct: 1   RIVRAAAVQ--ISPVLFSLEGTLAKVLEAIAEAAGKGVQLIVFPETFVPYY-------PY 51

Query: 64  FQRAKPY----KDH------------PTILKMQELAKELGVVMPVSFFEEANNAHYNSIA 107
           F   +P     K+H            P    + E A+E G+V+ +   E  + + YN+  
Sbjct: 52  FSFVQPPVLMGKEHLRLYEQAVVVPGPVTDAVAEAAREHGMVVVLGVNERDHGSLYNTQL 111

Query: 108 IIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGD-TGFKV 145
           I DADG  L L R+   P    Y E+  +  GD  G KV
Sbjct: 112 IFDADGE-LVLKRRKITPT---YHERMVWGQGDGAGLKV 146

This family represents a subfamily of a C-N bond-cleaving hydrolases (see pfam00795). Members occur as part of a cluster of genes in a probable biosynthetic cluster that contains a radical SAM protein, an N-acetyltransferase, a flavoprotein, several proteins of unknown function, and usually a glycosyltransferase. Members are closely related to a characterized aliphatic nitrilase from Rhodopseudomonas rhodochrous J1, for which an active site Cys was found at position 165 [Unknown function, Enzymes of unknown specificity]. Length = 301

>gnl|CDD|143595 cd07571, ALP_N-acyl_transferase, Apolipoprotein N-acyl transferase (class 9 nitrilases)

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 27/119 (22%)

Query: 69  PYKDHPTILKMQELAKELG--VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSH--- 123
             +D   + ++   A+ +G  ++      E     +YNS  ++D  G  LG Y K H   
Sbjct: 54  LQRDPDALARLARAARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVP 113

Query: 124 ----IPDGPGYQEKF-----YFNPGDTGFKVGAWNNLNLN--------LICFFDLIFDD 165
               +P     ++        F+     F  G      L         LIC ++ IF +
Sbjct: 114 FGEYVP----LRDLLRFLGLLFDLPMGDFSPGTGPQPLLLGGGVRVGPLIC-YESIFPE 167

ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9. Length = 270

>gnl|CDD|143598 cd07574, nitrilase_Rim1_like, Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 39/177 (22%), Positives = 62/177 (35%), Gaps = 39/177 (22%)

Query: 11  VSALQFACT--DDVSTNLATAERLVRAAHGKGANIILIQELF---------EGYYFCQAQ 59
           V+A Q+            A  E  V  A G GA++++  E F         E        
Sbjct: 3   VAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEA 62

Query: 60  REDFFQRAKPYKDHPTILKMQELAKELGV-VMPVSFFEEANNAHYNSIAIIDADGSDLGL 118
                     Y          ELA++ G+ ++  S     +   YN   +   DG+ +G 
Sbjct: 63  IRALAALTPDYVAL-----FSELARKYGINIIAGSMPVREDGRLYNRAYLFGPDGT-IGH 116

Query: 119 YRKSHIPDGPGYQEKFYFNPG------DTGF-KVGAWNNLNLNLICFFDLIFDDDFP 168
             K H+   P  +E++  + G      DT   K+G        LIC     +D +FP
Sbjct: 117 QDKLHMT--PFEREEWGISGGDKLKVFDTDLGKIGI-------LIC-----YDSEFP 159

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Length = 280

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
TIGR03381	279	agmatine_aguB N-carbamoylputrescine amidase. Membe	100.0
PLN02747	296	N-carbamolyputrescine amidase	100.0
cd07568	287	ML_beta-AS_like mammalian-like beta-alanine syntha	100.0
cd07587	363	ML_beta-AS mammalian-like beta-alanine synthase (b	100.0
PLN00202	405	beta-ureidopropionase	100.0
PF00795	186	CN_hydrolase: Carbon-nitrogen hydrolase The Prosit	100.0
PRK10438	256	C-N hydrolase family amidase; Provisional	100.0
cd07576	254	R-amidase_like Pseudomonas sp. MCI3434 R-amidase a	100.0
cd07583	253	nitrilase_5 Uncharacterized subgroup of the nitril	100.0
cd07573	284	CPA N-carbamoylputrescine amidohydrolase (CPA) (cl	100.0
cd07564	297	nitrilases_CHs Nitrilases, cyanide hydratase (CH)s	100.0
cd07579	279	nitrilase_1_R2 Second nitrilase domain of an uncha	100.0
cd07569	302	DCase N-carbamyl-D-amino acid amidohydrolase (DCas	100.0
PLN02504	346	nitrilase	100.0
cd07584	258	nitrilase_6 Uncharacterized subgroup of the nitril	100.0
PLN02798	286	nitrilase	100.0
cd07570	261	GAT_Gln-NAD-synth Glutamine aminotransferase (GAT,	100.0
cd07572	265	nit Nit1, Nit 2, and related proteins, and the Nit	100.0
cd07575	252	Xc-1258_like Xanthomonas campestris XC1258 and rel	100.0
cd07578	258	nitrilase_1_R1 First nitrilase domain of an unchar	100.0
cd07580	268	nitrilase_2 Uncharacterized subgroup of the nitril	100.0
cd07585	261	nitrilase_7 Uncharacterized subgroup of the nitril	100.0
cd07581	255	nitrilase_3 Uncharacterized subgroup of the nitril	100.0
cd07567	299	biotinidase_like biotinidase and vanins (class 4 n	100.0
cd07577	259	Ph0642_like Pyrococcus horikoshii Ph0642 and relat	100.0
cd07586	269	nitrilase_8 Uncharacterized subgroup of the nitril	100.0
COG0388	274	Predicted amidohydrolase [General function predict	100.0
cd07197	253	nitrilase Nitrilase superfamily, including nitrile	100.0
cd07565	291	aliphatic_amidase aliphatic amidases (class 2 nitr	100.0
PRK02628	679	nadE NAD synthetase; Reviewed	100.0
cd07571	270	ALP_N-acyl_transferase Apolipoprotein N-acyl trans	100.0
cd07574	280	nitrilase_Rim1_like Uncharacterized subgroup of th	100.0
PRK13981	540	NAD synthetase; Provisional	99.98
PLN02339	700	NAD+ synthase (glutamine-hydrolysing)	99.98
cd07566	295	ScNTA1_like Saccharomyces cerevisiae N-terminal am	99.98
cd07582	294	nitrilase_4 Uncharacterized subgroup of the nitril	99.97
PRK13287	333	amiF formamidase; Provisional	99.97
PRK13286	345	amiE acylamide amidohydrolase; Provisional	99.97
TIGR00546	391	lnt apolipoprotein N-acyltransferase. This enzyme	99.96
KOG0808	387	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.95
KOG0807	295	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.95
PRK00302	505	lnt apolipoprotein N-acyltransferase; Reviewed	99.95
PRK12291	418	apolipoprotein N-acyltransferase; Reviewed	99.94
KOG0806	298	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.94
KOG0805	337	consensus Carbon-nitrogen hydrolase [Amino acid tr	99.9
PRK13825	388	conjugal transfer protein TraB; Provisional	99.89
COG0815	518	Lnt Apolipoprotein N-acyltransferase [Cell envelop	99.87
KOG2303	706	consensus Predicted NAD synthase, contains CN hydr	99.65
cd07565	291	aliphatic_amidase aliphatic amidases (class 2 nitr	90.29
cd07576	254	R-amidase_like Pseudomonas sp. MCI3434 R-amidase a	88.68
cd07584	258	nitrilase_6 Uncharacterized subgroup of the nitril	86.41
cd07585	261	nitrilase_7 Uncharacterized subgroup of the nitril	85.56
PRK13286	345	amiE acylamide amidohydrolase; Provisional	85.27
PRK15018	245	1-acyl-sn-glycerol-3-phosphate acyltransferase; Pr	84.14
cd07583	253	nitrilase_5 Uncharacterized subgroup of the nitril	82.67
cd07197	253	nitrilase Nitrilase superfamily, including nitrile	82.33
cd07570	261	GAT_Gln-NAD-synth Glutamine aminotransferase (GAT,	82.16
cd07567	299	biotinidase_like biotinidase and vanins (class 4 n	81.95
cd07581	255	nitrilase_3 Uncharacterized subgroup of the nitril	80.94
cd07580	268	nitrilase_2 Uncharacterized subgroup of the nitril	80.36
cd07572	265	nit Nit1, Nit 2, and related proteins, and the Nit	80.31

>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase

Probab=100.00  E-value=2.1e-37  Score=250.87  Aligned_cols=173  Identities=58%  Similarity=0.930  Sum_probs=152.4

Q ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167            9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (198)
Q Consensus         9 ~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i   88 (198)
                      ||||++|+++..|+++|++++.+++++|+++|+|||||||++++||.+.+....+.+.++....++.++.++++|+++++
T Consensus         1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i   80 (279)
T TIGR03381         1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFEGPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELGV   80 (279)
T ss_pred             CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcCc
Confidence            68999999988899999999999999999999999999999999997654333344555544445789999999999999


Q ss_pred             EEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcccc
Q 029167           89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFP  168 (198)
Q Consensus        89 ~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r  168 (198)
                      +|++|++++.++++||++++|+++|++++.|+|.||+..+.+.|..+|++|+..+++|+++++|+|++||||.+|||.+|
T Consensus        81 ~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~~G~~~~~~f~~~~~~ig~~IC~D~~fpe~~r  160 (279)
T TIGR03381        81 VIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFRPGDTGFKVWDTRYGRIGVGICWDQWFPETAR  160 (279)
T ss_pred             EEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEccCCCCCceEecCCceEEEEEEcCCcChHHHH
Confidence            99999999888899999999999999999999999987555678889999985479999999999999999999999999


Q ss_pred             cc--CCCCccccccc
Q 029167          169 SR--LDFPLPFLNRF  181 (198)
Q Consensus       169 ~~--~~~~~~~~~~~  181 (198)
                      .+  +|+++++++++
T Consensus       161 ~~a~~ga~lil~ps~  175 (279)
T TIGR03381       161 AMALMGAEVLFYPTA  175 (279)
T ss_pred             HHHHcCCCEEEecCc
Confidence            85  89999987653

Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.

>PLN02747 N-carbamolyputrescine amidase

Probab=100.00  E-value=1.4e-36  Score=248.28  Aligned_cols=178  Identities=70%  Similarity=1.085  Sum_probs=154.6

Q ss_pred             CCCCccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHH
Q 029167            4 GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA   83 (198)
Q Consensus         4 ~~~~~~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a   83 (198)
                      .|..++|||++|+++..|++.|++++.+++++|+++|+|||||||++++||.+.....++.+.++....++.++.++++|
T Consensus         2 ~~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a   81 (296)
T PLN02747          2 GMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQAQREDFFQRAKPYEGHPTIARMQKLA   81 (296)
T ss_pred             CCCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHHHHHHH
Confidence            36678999999999988999999999999999999999999999999999976543334444444444357889999999


Q ss_pred             HHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccC
Q 029167           84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIF  163 (198)
Q Consensus        84 ~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~  163 (198)
                      ++++++|++|++++.++++||++++|+++|+++++|+|.||+..+.+.|..+|++|+..+++|+++++|+|++||||.+|
T Consensus        82 ~~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~~G~~~~~~~~~~~~rig~~IC~D~~f  161 (296)
T PLN02747         82 KELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFDTKFAKIGVAICWDQWF  161 (296)
T ss_pred             HHcCeEEEeeeeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeecCCCCCCeeEEcCCccEEEEEEccccc
Confidence            99999999999988889999999999999999999999999875556677889999754799999999999999999999


Q ss_pred             Ccccccc--CCCCccccccc
Q 029167          164 DDDFPSR--LDFPLPFLNRF  181 (198)
Q Consensus       164 pe~~r~~--~~~~~~~~~~~  181 (198)
                      |+.+|.+  +|++++++++.
T Consensus       162 pe~~r~~~~~Ga~lil~ps~  181 (296)
T PLN02747        162 PEAARAMVLQGAEVLLYPTA  181 (296)
T ss_pred             hHHHHHHHHCCCCEEEEeCc
Confidence            9999985  89999987544

>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=100.00  E-value=1.9e-36  Score=246.32  Aligned_cols=175  Identities=31%  Similarity=0.529  Sum_probs=152.1

Q ss_pred             CccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHH
Q 029167            7 REVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK   78 (198)
Q Consensus         7 ~~~~ia~~Q~~~~--------~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~   78 (198)
                      .+||||++|+++.        .+.++|++++.+++++|.++|+|||||||++++||.+.+....+.+.++....++.++.
T Consensus         2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   81 (287)
T cd07568           2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWYEFAEEIPNGPTTKR   81 (287)
T ss_pred             ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCccccccchhhhcccCCCChHHHH
Confidence            4699999999974        78899999999999999999999999999999998754433334455554423678999


Q ss_pred             HHHHHHHhCCEEEEeeeecc-CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEee
Q 029167           79 MQELAKELGVVMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLIC  157 (198)
Q Consensus        79 l~~~a~~~~i~iv~g~~~~~-~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~I  157 (198)
                      |+++|+++++++++|+.++. ++++||++++|+++|++++.|+|.||++++++.|..+|.+|+....+|+++++|+|++|
T Consensus        82 l~~~a~~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~~~~~~f~~~~~~iG~~I  161 (287)
T cd07568          82 FAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGNLGYPVFDTAFGKIGVYI  161 (287)
T ss_pred             HHHHHHHCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCCCCCceEEcCCceEEEEE
Confidence            99999999999999988765 57899999999999999999999999998888888899999844799999999999999


Q ss_pred             eecccCCcccccc--CCCCccccccc
Q 029167          158 FFDLIFDDDFPSR--LDFPLPFLNRF  181 (198)
Q Consensus       158 C~d~~~pe~~r~~--~~~~~~~~~~~  181 (198)
                      |||.+||+++|.+  +|++++++++.
T Consensus       162 CyD~~fpe~~r~la~~Ga~li~~ps~  187 (287)
T cd07568         162 CYDRHFPEGWRALGLNGAEIVFNPSA  187 (287)
T ss_pred             EecccCchHHHHHHHCCCeEEEECCc
Confidence            9999999999885  89999987653

This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases)

Probab=100.00  E-value=4.1e-36  Score=250.94  Aligned_cols=175  Identities=23%  Similarity=0.269  Sum_probs=150.5

Q ss_pred             CccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh-hhHHHHhcCCCCCChHHH
Q 029167            7 REVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-REDFFQRAKPYKDHPTIL   77 (198)
Q Consensus         7 ~~~~ia~~Q~~~~--------~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~-~~~~~~~a~~~~~~~~~~   77 (198)
                      +.||||++|.++.        .|++.|++++.+++++|+++|+|||||||++++||..... ...+.+.++...+++.++
T Consensus        62 ~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~~~~~~~~~~~ae~~~~g~~~~  141 (363)
T cd07587          62 RIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFCTREKLPWCEFAESAEDGPTTK  141 (363)
T ss_pred             ceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCccccccccchHHHHhhccCCChHHH
Confidence            3699999998862        4899999999999999999999999999999998853211 113445555543478999


Q ss_pred             HHHHHHHHhCCEEEEeeeeccC---CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEE
Q 029167           78 KMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLN  154 (198)
Q Consensus        78 ~l~~~a~~~~i~iv~g~~~~~~---~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig  154 (198)
                      .|+++|++++++|++|+.++.+   +++||++++|+++|++++.|+|.||+.++.+.|+.+|.+|+..+++|+++++|+|
T Consensus       142 ~l~~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G~~~~~vf~t~~griG  221 (363)
T cd07587         142 FCQELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEGNTGHPVFETQFGKIA  221 (363)
T ss_pred             HHHHHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecCCCCCceEEcCCceEE
Confidence            9999999999999999988753   6899999999999999999999999987777899999999865789999999999


Q ss_pred             EeeeecccCCcccccc--CCCCccccccc
Q 029167          155 LICFFDLIFDDDFPSR--LDFPLPFLNRF  181 (198)
Q Consensus       155 ~~IC~d~~~pe~~r~~--~~~~~~~~~~~  181 (198)
                      ++||||.+|||.+|.+  +||+++++|++
T Consensus       222 ~~ICyD~~fPe~~r~la~~GAdiil~Psa  250 (363)
T cd07587         222 VNICYGRHHPLNWLMYGLNGAEIVFNPSA  250 (363)
T ss_pred             EEEecccCCcHHHHHHHHcCCcEEEECCC
Confidence            9999999999999985  89999987644

This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric

>PLN00202 beta-ureidopropionase

Probab=100.00  E-value=2.5e-35  Score=248.79  Aligned_cols=174  Identities=21%  Similarity=0.286  Sum_probs=150.6

Q ss_pred             CCccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHH
Q 029167            6 RREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL   77 (198)
Q Consensus         6 ~~~~~ia~~Q~~~~--------~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~   77 (198)
                      .++||||++|.++.        .+.+.|++++.+++++|+++|+|||||||++.+||........+.+.++..+ +...+
T Consensus        84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~~~~~~~~~~ae~~~-g~~~~  162 (405)
T PLN00202         84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFCTREKRWCEFAEPVD-GESTK  162 (405)
T ss_pred             CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccccccchHHHHhhhCC-CHHHH
Confidence            46799999999972        4899999999999999999999999999999998854111112445566554 68899


Q ss_pred             HHHHHHHHhCCEEEEeeeecc---CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEE
Q 029167           78 KMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLN  154 (198)
Q Consensus        78 ~l~~~a~~~~i~iv~g~~~~~---~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig  154 (198)
                      .++++|++++++|++|+.++.   ++++|||+++|+++|+++++|+|.||+++++|.|+.+|.+|+.+.++|+++++|+|
T Consensus       163 ~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G~~g~~vf~t~~gkiG  242 (405)
T PLN00202        163 FLQELARKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAFGKIA  242 (405)
T ss_pred             HHHHHHHHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecCCCCceEEEeCCCeEE
Confidence            999999999999999988764   35799999999999999999999999998888899999999975689999999999


Q ss_pred             EeeeecccCCcccccc--CCCCcccccc
Q 029167          155 LICFFDLIFDDDFPSR--LDFPLPFLNR  180 (198)
Q Consensus       155 ~~IC~d~~~pe~~r~~--~~~~~~~~~~  180 (198)
                      ++||||.+|||++|.+  +||+++++|+
T Consensus       243 v~ICYD~~FPE~~r~la~~GAdiIl~Ps  270 (405)
T PLN00202        243 VNICYGRHHPLNWLAFGLNGAEIVFNPS  270 (405)
T ss_pred             EEEccccccHHHHHHHHHCCCcEEEECC
Confidence            9999999999999995  8999998754

>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []

Probab=100.00  E-value=1.7e-35  Score=226.00  Aligned_cols=169  Identities=27%  Similarity=0.367  Sum_probs=142.0

Q ss_pred             EEEEEeCCC---CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCc----chhhhHHHHhcCCCCCChHHHHHHHH
Q 029167           10 VVSALQFAC---TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFC----QAQREDFFQRAKPYKDHPTILKMQEL   82 (198)
Q Consensus        10 ~ia~~Q~~~---~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~----~~~~~~~~~~a~~~~~~~~~~~l~~~   82 (198)
                      |||++|.++   ..+.++|++++.+++++|.++++|||||||++++||..    .+...++.+.+.... ++.++.+.++
T Consensus         1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~   79 (186)
T PF00795_consen    1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLD-GPYLERLAEL   79 (186)
T ss_dssp             EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHST-SHHHHHHHHH
T ss_pred             CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccc-cHHHHHHHHH
Confidence            799999995   68899999999999999999999999999999999832    333344555554443 6899999999


Q ss_pred             HHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCC-ccccccCCCCCeeeEEeC-----CceEEEe
Q 029167           83 AKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-EKFYFNPGDTGFKVGAWN-----NLNLNLI  156 (198)
Q Consensus        83 a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~-e~~~~~~G~~~~~~~~~~-----~~~ig~~  156 (198)
                      ++++++++++|+++..++++||++++|+++|+++++|+|.||+|++++. |+.+|.+|....++|+++     |+|+|++
T Consensus        80 a~~~~~~i~~G~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g~~~~~~~~~~~~~~~g~~ig~~  159 (186)
T PF00795_consen   80 AKENGITIVAGIPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPGGDPFPVFETPVFDFGGGRIGVL  159 (186)
T ss_dssp             HHHHTSEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEESSESEEEEETETEETTEEEEEE
T ss_pred             HHhcCCcccccccccccccccceeEEEEeeecccccccceeeeccccccccceeeeeccceeeeeecceeeeccceEEEE
Confidence            9999999999999999999999999999999999999999999999988 888999985546676664     7999999


Q ss_pred             eeecccCCcccccc--CCCCccccc
Q 029167          157 CFFDLIFDDDFPSR--LDFPLPFLN  179 (198)
Q Consensus       157 IC~d~~~pe~~r~~--~~~~~~~~~  179 (198)
                      ||||.+||+++|.+  +|+++++++
T Consensus       160 ICyd~~fp~~~~~~~~~ga~il~~~  184 (186)
T PF00795_consen  160 ICYDLRFPELVRELAKQGADILINP  184 (186)
T ss_dssp             EGGGGGSHHHHHHHHHTTESEEEEE
T ss_pred             EEcccCChHHHHHHHHCCCCEEEeC
Confidence            99999999966653  555555544

They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....

>PRK10438 C-N hydrolase family amidase; Provisional

Probab=100.00  E-value=8.7e-35  Score=233.12  Aligned_cols=163  Identities=17%  Similarity=0.288  Sum_probs=136.2

Q ss_pred             CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHH
Q 029167            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE   85 (198)
Q Consensus         7 ~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~   85 (198)
                      ++||||++|.+. ..|++.|++++.+++++|  +|+|||||||++++||...+.    .+   ....++..+.++++|++
T Consensus         2 ~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~~~----~~---~~~~~~~~~~l~~~A~~   72 (256)
T PRK10438          2 SGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAMEAA----AS---SLPQDDVVAWMTAKAQQ   72 (256)
T ss_pred             CCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCcccch----hh---ccccchHHHHHHHHHHH
Confidence            359999999998 689999999999999986  699999999999999975431    11   11124678999999999


Q ss_pred             hCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCc
Q 029167           86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDD  165 (198)
Q Consensus        86 ~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe  165 (198)
                      +++.|+++..++.++++|||+++|+++|. ++.|+|.||++.  +.|..+|++|+. +++|+++++|+|++||||.+|||
T Consensus        73 ~~~~i~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~--~~E~~~f~~G~~-~~v~~~~~~~iG~~ICyD~~fPe  148 (256)
T PRK10438         73 TNALIAGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRM--ADEHLHYKAGNA-RVIVEWRGWRILPLVCYDLRFPV  148 (256)
T ss_pred             cCeEEEEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCC--CCccceecCCCC-ceEEEECCEEEEEEEEeecCCHH
Confidence            99755434445556789999999999997 679999999764  357889999998 89999999999999999999999


Q ss_pred             cccccCCCCccccc-ccc
Q 029167          166 DFPSRLDFPLPFLN-RFS  182 (198)
Q Consensus       166 ~~r~~~~~~~~~~~-~~~  182 (198)
                      ++|.+.|+++++++ .|.
T Consensus       149 ~~r~l~gad~i~~~s~~~  166 (256)
T PRK10438        149 WSRNRNDYDLALYVANWP  166 (256)
T ss_pred             HHHhhcCCCEEEEecCCC
Confidence            99999999999853 453

>cd07576 R-amidase_like Pseudomonas sp

Probab=100.00  E-value=1.4e-34  Score=231.34  Aligned_cols=163  Identities=28%  Similarity=0.434  Sum_probs=144.8

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (198)
Q Consensus        10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i   88 (198)
                      |||++|+++ ..+++.|++++.+++++|.++|+|+|||||++++||...+.   +.+.+.... ++..+.++++|+++++
T Consensus         1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~~~---~~~~~~~~~-~~~~~~l~~~a~~~~~   76 (254)
T cd07576           1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIGDA---VARLAEPAD-GPALQALRAIARRHGI   76 (254)
T ss_pred             CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCcch---hhhhhcccC-ChHHHHHHHHHHHcCC
Confidence            699999999 78999999999999999999999999999999999986542   111222222 6789999999999999


Q ss_pred             EEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcccc
Q 029167           89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFP  168 (198)
Q Consensus        89 ~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r  168 (198)
                      ++++|++++.++++||++++|+++|++++.|+|.||+++   .|..+|++|+. +++|+++++|+|++||||.+|||++|
T Consensus        77 ~ii~G~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~---~E~~~~~~G~~-~~v~~~~~~kig~~IC~D~~fpe~~~  152 (254)
T cd07576          77 AIVVGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFGD---SERAAFTPGDR-FPVVELRGLRVGLLICYDVEFPELVR  152 (254)
T ss_pred             EEEEeccccCCCceEEEEEEECCCCCEeeEEEeeccCCc---chhhhccCCCC-ceEEEECCeEEEEEEeecCCCCHHHH
Confidence            999999998889999999999999999999999999872   47788999999 89999999999999999999999999


Q ss_pred             cc--CCCCcccccc
Q 029167          169 SR--LDFPLPFLNR  180 (198)
Q Consensus       169 ~~--~~~~~~~~~~  180 (198)
                      .+  .|++++++++
T Consensus       153 ~~~~~gadii~~p~  166 (254)
T cd07576         153 ALALAGADLVLVPT  166 (254)
T ss_pred             HHHHCCCCEEEECC
Confidence            86  8999998765

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl

>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=1.2e-34  Score=231.66  Aligned_cols=163  Identities=26%  Similarity=0.388  Sum_probs=143.4

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (198)
Q Consensus        10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i   88 (198)
                      |||++|+++ ..+.++|++++.+++++|.++|+|||||||++++||.+.+.    ...+.... ++.++.++++|+++++
T Consensus         1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~----~~~~~~~~-~~~~~~l~~~a~~~~~   75 (253)
T cd07583           1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFLDDL----YELADEDG-GETVSFLSELAKKHGV   75 (253)
T ss_pred             CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCChhhH----HhhhcccC-chHHHHHHHHHHHcCc
Confidence            699999999 68999999999999999999999999999999999976542    22223333 6889999999999999


Q ss_pred             EEEEeee-eccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCccc
Q 029167           89 VMPVSFF-EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDF  167 (198)
Q Consensus        89 ~iv~g~~-~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~  167 (198)
                      ++++|+. ++.++++||++++|+++|++++.|+|+||+++  +.|..+|++|+. +++|+++++|+|++||||.+|||++
T Consensus        76 ~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~--~~e~~~~~~G~~-~~v~~~~~~rig~~IC~D~~~pe~~  152 (253)
T cd07583          76 NIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGL--MGEDKYLTAGDE-LEVFELDGGKVGLFICYDLRFPELF  152 (253)
T ss_pred             EEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCC--cCchhhccCCCC-ceEEEeCCeEEEEEEEeccccHHHH
Confidence            9999975 55678999999999999999999999999985  357788999998 8999999999999999999999999


Q ss_pred             ccc--CCCCcccccc
Q 029167          168 PSR--LDFPLPFLNR  180 (198)
Q Consensus       168 r~~--~~~~~~~~~~  180 (198)
                      |.+  +|++++++++
T Consensus       153 r~~~~~ga~ll~~ps  167 (253)
T cd07583         153 RKLALEGAEILFVPA  167 (253)
T ss_pred             HHHHHcCCcEEEECC
Confidence            986  8999998653

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases)

Probab=100.00  E-value=1.6e-34  Score=234.67  Aligned_cols=173  Identities=50%  Similarity=0.782  Sum_probs=150.2

Q ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167            9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (198)
Q Consensus         9 ~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i   88 (198)
                      ||||++|+++..|++.|++++.+++++|.++|+|||||||++++||.+.+...++.+.++....++.++.++++|+++++
T Consensus         1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~i   80 (284)
T cd07573           1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELGV   80 (284)
T ss_pred             CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcccccchhHHhccccCCCHHHHHHHHHHHHCCE
Confidence            69999999998899999999999999999999999999999999998765433444555411236788999999999999


Q ss_pred             EEEEeeeecc-CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCccc
Q 029167           89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDF  167 (198)
Q Consensus        89 ~iv~g~~~~~-~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~  167 (198)
                      ++++|+.++. ++++||++++|+++|+++++|+|.||+..+.+.|..+|.+|+..+++|+++++|+|++||||.+||+++
T Consensus        81 ~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~fpe~~  160 (284)
T cd07573          81 VIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFTPGDTGFKVFDTRYGRIGVLICWDQWFPEAA  160 (284)
T ss_pred             EEEecceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceecCCCCCCceEecCCceEEEEEeccccchHHH
Confidence            9999998875 468999999999999999999999998765567888899999338999999999999999999999999


Q ss_pred             ccc--CCCCccccccc
Q 029167          168 PSR--LDFPLPFLNRF  181 (198)
Q Consensus       168 r~~--~~~~~~~~~~~  181 (198)
                      |.+  .|++++++++.
T Consensus       161 r~~~~~gadlil~ps~  176 (284)
T cd07573         161 RLMALQGAEILFYPTA  176 (284)
T ss_pred             HHHHHCCCCEEEecCc
Confidence            886  89999987553

CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.

>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases)

Probab=100.00  E-value=1.6e-34  Score=236.15  Aligned_cols=165  Identities=24%  Similarity=0.297  Sum_probs=141.5

Q ss_pred             cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh-------hh---HHHHhcCCCCCChHHH
Q 029167            9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ-------RE---DFFQRAKPYKDHPTIL   77 (198)
Q Consensus         9 ~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~-------~~---~~~~~a~~~~~~~~~~   77 (198)
                      ||||++|+++ +.|++.|++++.+++++|+++|+|+|||||++++||...+.       .+   ++.+.+...+ +..++
T Consensus         1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   79 (297)
T cd07564           1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFGAPAEGRELFARYYENSVEVD-GPELE   79 (297)
T ss_pred             CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcCCcccchHHHHHHHHhCcCCC-CHHHH
Confidence            6899999998 78999999999999999999999999999999999976321       11   2233343333 68899


Q ss_pred             HHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCC-CeeeEEeCCceEEEe
Q 029167           78 KMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVGAWNNLNLNLI  156 (198)
Q Consensus        78 ~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~~ig~~  156 (198)
                      .|+++|++++++|++|++++.++++||++++|+++|+++++|+|.||..    .|..+|.+|.. .+++|+++++|+|++
T Consensus        80 ~l~~~a~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~----~E~~~~~~g~~~~~~v~~~~~~kig~~  155 (297)
T cd07564          80 RLAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLKPTH----AERLVWGQGDGSGLRVVDTPIGRLGAL  155 (297)
T ss_pred             HHHHHHHHcCcEEEEeeEeccCCceEEEEEEEcCCCCEeeeeeccCCCc----hhhhhcccCCCCCceEEecCCceEEEE
Confidence            9999999999999999998878899999999999999999999999764    57778898873 268999999999999


Q ss_pred             eeecccCCcccccc--CCCCcccc
Q 029167          157 CFFDLIFDDDFPSR--LDFPLPFL  178 (198)
Q Consensus       157 IC~d~~~pe~~r~~--~~~~~~~~  178 (198)
                      ||||.+|||++|.+  +||+++++
T Consensus       156 ICyD~~fPe~~r~~a~~ga~ii~~  179 (297)
T cd07564         156 ICWENYMPLARYALYAQGEQIHVA  179 (297)
T ss_pred             EEhhcCCHHHHHHHHHCCCeEEEE
Confidence            99999999988875  78888775

Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that

>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=1.3e-34  Score=234.78  Aligned_cols=158  Identities=27%  Similarity=0.368  Sum_probs=141.1

Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCE
Q 029167           10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV   89 (198)
Q Consensus        10 ~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~   89 (198)
                      |||++|+++..|+++|++++.+++++|+++|+|||||||++++||....      ..+.... ++.++.++++|++++++
T Consensus         1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~~------~~~~~~~-~~~~~~l~~lA~~~~i~   73 (279)
T cd07579           1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDPA------SEAESDT-GPAVSALRRLARRLRLY   73 (279)
T ss_pred             CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCChH------HhcccCC-CHHHHHHHHHHHHcCeE
Confidence            6999999996699999999999999999999999999999999986432      1233332 57899999999999999


Q ss_pred             EEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCccccc
Q 029167           90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFPS  169 (198)
Q Consensus        90 iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r~  169 (198)
                      +++|++++.++++||++++|+++| +++.|+|.||++    .|..+|++|+. +++|+++++|+|++||||.+|||++|.
T Consensus        74 iv~G~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~----~E~~~f~~G~~-~~v~~~~~~kiG~~ICyD~~fPe~~r~  147 (279)
T cd07579          74 LVAGFAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIE----PERSWATPGDT-WPVYDLPLGRVGLLIGHDALFPEAGRV  147 (279)
T ss_pred             EEEeceEccCCcEEEEEEEEeCCe-eEEEEecccCCC----cchhhccCCCC-CeeEEcCceeEEEEEeccccCcHHHHH
Confidence            999999888889999999999989 679999999986    47789999998 899999999999999999999999998


Q ss_pred             c--CCCCcccccc
Q 029167          170 R--LDFPLPFLNR  180 (198)
Q Consensus       170 ~--~~~~~~~~~~  180 (198)
                      +  .||+++++++
T Consensus       148 ~a~~Ga~ii~~ps  160 (279)
T cd07579         148 LALRGCDLLACPA  160 (279)
T ss_pred             HHHCCCCEEEECC
Confidence            6  8999998765

Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases)

Probab=100.00  E-value=3.1e-34  Score=235.02  Aligned_cols=171  Identities=23%  Similarity=0.332  Sum_probs=141.8

Q ss_pred             CccEEEEEeCCC-CC--CHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh---hhHHHHhcCCCCCChHHHHHH
Q 029167            7 REVVVSALQFAC-TD--DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ---REDFFQRAKPYKDHPTILKMQ   80 (198)
Q Consensus         7 ~~~~ia~~Q~~~-~~--~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~---~~~~~~~a~~~~~~~~~~~l~   80 (198)
                      .+||||++|+++ ..  +.+.|++++.+++++|+++|+|||||||++++||.....   ..+.....+....++..+.++
T Consensus         2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (302)
T cd07569           2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWYFPDEAELDSFFETEMPNPETQPLF   81 (302)
T ss_pred             ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccccCChHHhhhhhhhcCCChhHHHHH
Confidence            369999999987 33  789999999999999999999999999999999854211   111211111111257889999


Q ss_pred             HHHHHhCCEEEEeeeecc-CC---eeEEEEEEEcCCCCeeeeeeeccCCCCCCC--------CccccccCCC-CCeeeEE
Q 029167           81 ELAKELGVVMPVSFFEEA-NN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGY--------QEKFYFNPGD-TGFKVGA  147 (198)
Q Consensus        81 ~~a~~~~i~iv~g~~~~~-~~---~~yNs~~~i~~~G~il~~y~K~~l~~~~~~--------~e~~~~~~G~-~~~~~~~  147 (198)
                      ++|+++++.+++|++++. ++   ++||++++|+++|+++++|+|.||++++++        .|..+|++|+ . +++|+
T Consensus        82 ~~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~~G~~~-~~v~~  160 (302)
T cd07569          82 DRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFEPGDLG-FPVFR  160 (302)
T ss_pred             HHHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccCCCCCC-CceEe
Confidence            999999999999998753 44   899999999999999999999999886643        3677899999 6 89999


Q ss_pred             eCCceEEEeeeecccCCcccccc--CCCCcccc
Q 029167          148 WNNLNLNLICFFDLIFDDDFPSR--LDFPLPFL  178 (198)
Q Consensus       148 ~~~~~ig~~IC~d~~~pe~~r~~--~~~~~~~~  178 (198)
                      ++++|+|++||||.+|||++|.+  +|++++++
T Consensus       161 ~~~~rig~~IC~D~~fpe~~r~~a~~Ga~lll~  193 (302)
T cd07569         161 VPGGIMGMCICNDRRWPETWRVMGLQGVELVLL  193 (302)
T ss_pred             cCCceEEEEEeeccccchHHHHHHHCCCcEEEe
Confidence            99999999999999999998885  88998885

DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.

>PLN02504 nitrilase

Probab=100.00  E-value=3.3e-34  Score=238.33  Aligned_cols=169  Identities=18%  Similarity=0.200  Sum_probs=145.1

Q ss_pred             CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh---------------hhHHHHhcCCC
Q 029167            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ---------------REDFFQRAKPY   70 (198)
Q Consensus         7 ~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~---------------~~~~~~~a~~~   70 (198)
                      ++||||++|.++ ..|.+.|++++++++++|+++|+|||||||++++||+....               ...+...+...
T Consensus        23 ~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  102 (346)
T PLN02504         23 STVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDFRKYHASAIDV  102 (346)
T ss_pred             CceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHHHHHHHhcccC
Confidence            569999999999 68999999999999999999999999999999999975211               01223334444


Q ss_pred             CCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCC-CeeeEEeC
Q 029167           71 KDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDT-GFKVGAWN  149 (198)
Q Consensus        71 ~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~  149 (198)
                      + ++.++.|+++|++++++|++|++++.++++||++++|+++|+++++|+|.|+.+    .|+.+|.+|.. .+++|+++
T Consensus       103 ~-g~~i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~----~E~~~f~~G~g~~~~vf~~~  177 (346)
T PLN02504        103 P-GPEVDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTA----LERLIWGFGDGSTIPVYDTP  177 (346)
T ss_pred             C-CHHHHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCCc----ccceeeecCCCCCCceEEcC
Confidence            4 688999999999999999999998888899999999999999999999998865    47788888873 37899999


Q ss_pred             CceEEEeeeecccCCcccccc--CCCCcccccc
Q 029167          150 NLNLNLICFFDLIFDDDFPSR--LDFPLPFLNR  180 (198)
Q Consensus       150 ~~~ig~~IC~d~~~pe~~r~~--~~~~~~~~~~  180 (198)
                      ++|+|++||||.+|||++|.+  +|++++++++
T Consensus       178 ~griG~lICyD~~fPe~~r~la~~Gadii~~p~  210 (346)
T PLN02504        178 IGKIGAVICWENRMPLLRTAMYAKGIEIYCAPT  210 (346)
T ss_pred             CceEEEEEeccchhHHHHHHHHHCCCeEEEECC
Confidence            999999999999999998885  8999998764

>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=2.6e-34  Score=230.42  Aligned_cols=165  Identities=30%  Similarity=0.431  Sum_probs=144.6

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (198)
Q Consensus        10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i   88 (198)
                      |||++|++. +.|.+.|++++.+++++|.++|+|||||||++++||.+........+.+.... ++..+.++++|+++++
T Consensus         1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~l~~~a~~~~i   79 (258)
T cd07584           1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSEPID-GPTVRLFSELAKELGV   79 (258)
T ss_pred             CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhccCCC-CcHHHHHHHHHHHcCe
Confidence            699999998 78999999999999999999999999999999999987543333334444433 5788999999999999


Q ss_pred             EEEEeeeeccC--CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcc
Q 029167           89 VMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDD  166 (198)
Q Consensus        89 ~iv~g~~~~~~--~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~  166 (198)
                      ++++|+++..+  +++||++++|+++|++++.|+|.||++    .|..+|++|+. +++|+++++|+|++||||++||++
T Consensus        80 ~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~----~e~~~~~~G~~-~~~~~~~~~~~g~~IC~D~~fpe~  154 (258)
T cd07584          80 YIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWG----LEKQYFREGEQ-YPVFDTPFGKIGVMICYDMGFPEV  154 (258)
T ss_pred             EEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCc----hhhhhccCCCC-CeeEEcCCceEEEEEEcCccChHH
Confidence            99999988653  689999999999999999999999986    36778999998 899999999999999999999999


Q ss_pred             cccc--CCCCcccccc
Q 029167          167 FPSR--LDFPLPFLNR  180 (198)
Q Consensus       167 ~r~~--~~~~~~~~~~  180 (198)
                      +|.+  +|++++++++
T Consensus       155 ~r~~~~~gadll~~ps  170 (258)
T cd07584         155 ARILTLKGAEVIFCPS  170 (258)
T ss_pred             HHHHHHCCCcEEEECC
Confidence            9986  8999998654

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PLN02798 nitrilase

Probab=100.00  E-value=8.2e-34  Score=230.89  Aligned_cols=172  Identities=25%  Similarity=0.331  Sum_probs=144.9

Q ss_pred             CCCCccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCC-CCCccCcchhhhHHHHhcCCCCCChHHHHHHHH
Q 029167            4 GKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-FEGYYFCQAQREDFFQRAKPYKDHPTILKMQEL   82 (198)
Q Consensus         4 ~~~~~~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~-~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~   82 (198)
                      .|..+||||++|.+...+++.|++++++++++|.++|+|||||||+ .++|+...+    ..+.++..+ ++..+.++++
T Consensus         6 ~~~~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~----~~~~~~~~~-~~~~~~l~~~   80 (286)
T PLN02798          6 TAGSSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGE----SLAIAEPLD-GPIMQRYRSL   80 (286)
T ss_pred             cccCccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchh----hhhhcccCC-CHHHHHHHHH
Confidence            3556799999999988899999999999999999999999999998 456765432    333344433 5789999999


Q ss_pred             HHHhCCEEEEe-eeec--cCCeeEEEEEEEcCCCCeeeeeeeccCCCC-----CCCCccccccCCCCCeeeEEeCCceEE
Q 029167           83 AKELGVVMPVS-FFEE--ANNAHYNSIAIIDADGSDLGLYRKSHIPDG-----PGYQEKFYFNPGDTGFKVGAWNNLNLN  154 (198)
Q Consensus        83 a~~~~i~iv~g-~~~~--~~~~~yNs~~~i~~~G~il~~y~K~~l~~~-----~~~~e~~~~~~G~~~~~~~~~~~~~ig  154 (198)
                      |+++++.|++| .+++  .++++||++++|+++|++++.|+|+||++.     ..+.|..+|++|+. +.+|+++++|+|
T Consensus        81 A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~~G~~-~~v~~~~~~k~g  159 (286)
T PLN02798         81 ARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTAPGKT-IVAVDSPVGRLG  159 (286)
T ss_pred             HHHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCcccccccccCCCe-eeEEecCCceEE
Confidence            99999999987 5555  457899999999999999999999999532     22357788999998 899999999999


Q ss_pred             EeeeecccCCccccc---cCCCCccccccc
Q 029167          155 LICFFDLIFDDDFPS---RLDFPLPFLNRF  181 (198)
Q Consensus       155 ~~IC~d~~~pe~~r~---~~~~~~~~~~~~  181 (198)
                      ++||||.+||+.+|.   ..|++++++++|
T Consensus       160 ~~IC~D~~fpe~~r~~a~~~Gadlil~ps~  189 (286)
T PLN02798        160 LTVCYDLRFPELYQQLRFEHGAQVLLVPSA  189 (286)
T ss_pred             EEEEEcccChHHHHHHHHhCCCcEEEECCc
Confidence            999999999999999   489999988765

>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

Probab=100.00  E-value=2.3e-34  Score=231.02  Aligned_cols=164  Identities=22%  Similarity=0.304  Sum_probs=140.1

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh--hhHHHHhcCCCCCChHHHHHHHHHHHh
Q 029167           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ--REDFFQRAKPYKDHPTILKMQELAKEL   86 (198)
Q Consensus        10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~--~~~~~~~a~~~~~~~~~~~l~~~a~~~   86 (198)
                      |||++|+++ ..|+++|++++.+++++|+++|+|||||||++++||.+.+.  ...+...     ..+.++.|.+.++++
T Consensus         1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~-----~~~~~~~la~~~~~~   75 (261)
T cd07570           1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPEDLLLRPDFLEA-----AEEALEELAAATADL   75 (261)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChHHHhhCHHHHHH-----HHHHHHHHHHhcccC
Confidence            699999998 78999999999999999999999999999999999976532  1111110     023445555555666


Q ss_pred             CCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcc
Q 029167           87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDD  166 (198)
Q Consensus        87 ~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~  166 (198)
                      ++++++|++++.++++||++++| ++|++++.|+|.||++++++.|..+|++|+. ..+|+++++|+|++||||.+||+.
T Consensus        76 ~i~ii~G~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~~fpe~  153 (261)
T cd07570          76 DIAVVVGLPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYGVFDEKRYFTPGDK-PDVLFFKGLRIGVEICEDLWVPDP  153 (261)
T ss_pred             CcEEEEeceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCccccccccCccCCC-CCeEEECCEEEEEEeecccCCCCc
Confidence            99999999998889999999999 6999999999999999888889999999998 889999999999999999999999


Q ss_pred             -cccc--CCCCcccccc
Q 029167          167 -FPSR--LDFPLPFLNR  180 (198)
Q Consensus       167 -~r~~--~~~~~~~~~~  180 (198)
                       +|.+  .|++++++++
T Consensus       154 ~~r~~~~~ga~ll~~ps  170 (261)
T cd07570         154 PSAELALAGADLILNLS  170 (261)
T ss_pred             hHHHHHHcCCcEEEEeC
Confidence             8886  8999998754

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub

>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

Probab=100.00  E-value=7.7e-34  Score=228.31  Aligned_cols=169  Identities=27%  Similarity=0.294  Sum_probs=144.0

Q ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCE
Q 029167           10 VVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV   89 (198)
Q Consensus        10 ~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~   89 (198)
                      |||++|+++..++++|++++.+++++|.++|+|+|||||++++||.+.+....  ..+... .++..+.++++|++++++
T Consensus         1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~~~~~~--~~~~~~-~~~~~~~l~~~a~~~~i~   77 (265)
T cd07572           1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTDAFKLA--LAEEEG-DGPTLQALSELAKEHGIW   77 (265)
T ss_pred             CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcchhhhhh--hhcccc-CChHHHHHHHHHHHCCeE
Confidence            69999999988999999999999999999999999999999999876542111  012222 257889999999999999


Q ss_pred             EEEe-eeeccC--CeeEEEEEEEcCCCCeeeeeeeccCCCC-----CCCCccccccCCCCCeeeEEeCCceEEEeeeecc
Q 029167           90 MPVS-FFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDG-----PGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDL  161 (198)
Q Consensus        90 iv~g-~~~~~~--~~~yNs~~~i~~~G~il~~y~K~~l~~~-----~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~  161 (198)
                      +++| ++++.+  +++||++++++++|++++.|+|+||++.     ..+.|..+|++|+. +.+|+++++|+|++||||.
T Consensus        78 i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~  156 (265)
T cd07572          78 LVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLTPGDE-VVVVDTPFGKIGLGICYDL  156 (265)
T ss_pred             EEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccCCCCc-ceEEecCCceEEEEEEecc
Confidence            9987 556665  8999999999999999999999999532     13567889999998 8999999999999999999


Q ss_pred             cCCcccccc--CCCCcccccccc
Q 029167          162 IFDDDFPSR--LDFPLPFLNRFS  182 (198)
Q Consensus       162 ~~pe~~r~~--~~~~~~~~~~~~  182 (198)
                      +||+.+|.+  .|++++++++|.
T Consensus       157 ~~pe~~r~~~~~gadli~~p~~~  179 (265)
T cd07572         157 RFPELARALARQGADILTVPAAF  179 (265)
T ss_pred             CcHHHHHHHHHCCCCEEEECCCC
Confidence            999999986  899999987764

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t

>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=1.6e-33  Score=225.27  Aligned_cols=163  Identities=21%  Similarity=0.281  Sum_probs=142.4

Q ss_pred             cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhC
Q 029167            9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG   87 (198)
Q Consensus         9 ~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~   87 (198)
                      ||||++|+++ +.|++.|++++.+.+++|++ |+|||||||++++||.+..     .+.++... +..+++++++|++++
T Consensus         1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~~~-----~~~~~~~~-~~~~~~l~~la~~~~   73 (252)
T cd07575           1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSMNA-----EALAEPMN-GPTLQWMKAQAKKKG   73 (252)
T ss_pred             CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCccH-----HHhhcccC-ChHHHHHHHHHHHCC
Confidence            7999999999 69999999999999999987 9999999999999997543     12233333 688999999999999


Q ss_pred             CEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCccc
Q 029167           88 VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDF  167 (198)
Q Consensus        88 i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~  167 (198)
                      +.+++|++++.++++||++++++++|++ ..|+|+||++++  .|..+|++|+. ..+|+++++|+|++||||.+|||++
T Consensus        74 i~i~~~~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~~--~e~~~~~~G~~-~~~~~~~~~~ig~~IC~D~~~pe~~  149 (252)
T cd07575          74 AAITGSLIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRMA--GEHKVYTAGNE-RVIVEYKGWKILLQVCYDLRFPVWS  149 (252)
T ss_pred             eEEEEEEEEccCCceEEEEEEECCCCCE-EEEeeeecCCCC--CccceecCCCC-ceEEEECCEEEEEEEEeccCChHHH
Confidence            9999899888888999999999999985 599999998643  47788999997 8999999999999999999999999


Q ss_pred             cccCCCCcccccc-cc
Q 029167          168 PSRLDFPLPFLNR-FS  182 (198)
Q Consensus       168 r~~~~~~~~~~~~-~~  182 (198)
                      |.+.+++++++++ |.
T Consensus       150 r~~~~a~lil~~s~~~  165 (252)
T cd07575         150 RNTNDYDLLLYVANWP  165 (252)
T ss_pred             HhhcCCCEEEEeCCCC
Confidence            9987799998654 54

Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.

>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=1.3e-33  Score=226.43  Aligned_cols=167  Identities=22%  Similarity=0.229  Sum_probs=142.5

Q ss_pred             cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhC
Q 029167            9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG   87 (198)
Q Consensus         9 ~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~   87 (198)
                      +|||++|++. .+|.+.|++++.+++++|+++|+|||||||++++||...+. .+.....+..+ ++..+.++++|++++
T Consensus         1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~~~~-~~~~~~~~~~~-~~~~~~l~~~a~~~~   78 (258)
T cd07578           1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCWYDR-AEIAPFVEPIP-GPTTARFAELAREHD   78 (258)
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCcCCH-HHhhhhcccCC-CHHHHHHHHHHHHcC
Confidence            5899999999 68999999999999999999999999999999999986542 22333333333 578899999999999


Q ss_pred             CEEEEeeeecc--CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCc
Q 029167           88 VVMPVSFFEEA--NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDD  165 (198)
Q Consensus        88 i~iv~g~~~~~--~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe  165 (198)
                      +.+++|++++.  ++++||++++|+++| +++.|+|.|+..    .|..+|++|+..+.+|+++++|+|++||||++|||
T Consensus        79 i~ii~G~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~----~e~~~~~~g~~~~~v~~~~~~rig~~IC~D~~fpe  153 (258)
T cd07578          79 CYIVVGLPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYI----SEPKWAADGDLGHQVFDTEIGRIALLICMDIHFFE  153 (258)
T ss_pred             cEEEEecceecCCCCCeeEEEEEECCCC-cEEeEeeecCCc----ccccccCCCCCCceEEECCCccEEEEEeeCCCchH
Confidence            99999998764  478999999999888 789999999854    46778999985478999999999999999999999


Q ss_pred             ccccc--CCCCccccc-ccc
Q 029167          166 DFPSR--LDFPLPFLN-RFS  182 (198)
Q Consensus       166 ~~r~~--~~~~~~~~~-~~~  182 (198)
                      ++|.+  .|+++++++ +|.
T Consensus       154 ~~r~~~~~ga~ll~~ps~~~  173 (258)
T cd07578         154 TARLLALGGADVICHISNWL  173 (258)
T ss_pred             HHHHHHHcCCCEEEEcCCCC
Confidence            99995  899999864 353

Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=1.5e-33  Score=227.28  Aligned_cols=165  Identities=29%  Similarity=0.448  Sum_probs=142.2

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (198)
Q Consensus        10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i   88 (198)
                      |||++|+++ ..+.++|++++.+++++|.++|+|||||||++++||...+.. +....+.....++.++.++++|+++++
T Consensus         1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~   79 (268)
T cd07580           1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVFESRD-EAFALAEEVPDGASTRAWAELAAELGL   79 (268)
T ss_pred             CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCCCCHH-HHHHhhccCCCCchHHHHHHHHHHcCc
Confidence            699999999 689999999999999999999999999999999998765421 222222222235688999999999999


Q ss_pred             EEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcccc
Q 029167           89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFP  168 (198)
Q Consensus        89 ~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r  168 (198)
                      ++++|++++.++++||++++|+++|. ++.|+|.||++    .|..+|++|+..+++|+++++|+|++||||++||+++|
T Consensus        80 ~i~~G~~~~~~~~~yNs~~vi~~~g~-~~~y~K~~l~~----~e~~~f~~G~~~~~v~~~~~~~ig~~IC~D~~fpe~~r  154 (268)
T cd07580          80 YIVAGFAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWN----EEKLLFEPGDLGLPVFDTPFGRIGVAICYDGWFPETFR  154 (268)
T ss_pred             EEEeecccccCCceEEEEEEECCCCc-EEEEEEecCCc----hhcceecCCCCCCceEEcCCCcEEEEEECcccchHHHH
Confidence            99999998888899999999999885 79999999987    47789999997679999999999999999999999998


Q ss_pred             cc--CCCCcccccc
Q 029167          169 SR--LDFPLPFLNR  180 (198)
Q Consensus       169 ~~--~~~~~~~~~~  180 (198)
                      .+  +|++++++++
T Consensus       155 ~~~~~ga~li~~ps  168 (268)
T cd07580         155 LLALQGADIVCVPT  168 (268)
T ss_pred             HHHHcCCCEEEEcC
Confidence            85  8999998643

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=1.5e-33  Score=226.39  Aligned_cols=162  Identities=24%  Similarity=0.388  Sum_probs=142.6

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (198)
Q Consensus        10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i   88 (198)
                      |||++|+++ .++++.|++++.+++++|+++|+|+|||||++++||.+...   ....+.. ..++.++.++++|+++++
T Consensus         1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~~~---~~~~~~~-~~~~~~~~l~~~a~~~~~   76 (261)
T cd07585           1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHVRA---LSREAEV-PDGPSTQALSDLARRYGL   76 (261)
T ss_pred             CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCCcc---cchhccc-CCChHHHHHHHHHHHcCc
Confidence            699999999 78999999999999999999999999999999999986531   1111221 226788999999999999


Q ss_pred             EEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcccc
Q 029167           89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFP  168 (198)
Q Consensus        89 ~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r  168 (198)
                      .+++|++++.++++||++++|+++|. ++.|+|.||++    .|..+|++|+. +++|+++++|+|++||||.+||+++|
T Consensus        77 ~i~~G~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~----~E~~~~~~G~~-~~v~~~~~~rig~~IC~D~~~pe~~r  150 (261)
T cd07585          77 TILAGLIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFR----REHPYIAAGDE-YPVFATPGVRFGILICYDNHFPENVR  150 (261)
T ss_pred             EEEEeccccCCCceeEEEEEECCCCc-EeEEeeecCCc----cccceEcCCCC-CceEEcCCceEEEEEEcCCcCcHHHH
Confidence            99999999888999999999999997 68999999987    47789999998 89999999999999999999999999


Q ss_pred             cc--CCCCccccccc
Q 029167          169 SR--LDFPLPFLNRF  181 (198)
Q Consensus       169 ~~--~~~~~~~~~~~  181 (198)
                      .+  .|+|++++|++
T Consensus       151 ~l~~~gadlil~p~~  165 (261)
T cd07585         151 ATALLGAEILFAPHA  165 (261)
T ss_pred             HHHHCCCCEEEECCc
Confidence            86  89999998754

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=3e-33  Score=223.81  Aligned_cols=167  Identities=26%  Similarity=0.408  Sum_probs=144.7

Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEE
Q 029167           11 VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVM   90 (198)
Q Consensus        11 ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~i   90 (198)
                      ||++|++..+|+++|++++.+++++|+++|+|+|||||++++||...+.  .+.+.+.... ++.++.++++|+++++++
T Consensus         1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~~~--~~~~~~~~~~-~~~~~~l~~~a~~~~i~i   77 (255)
T cd07581           1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDGLD--DYARVAEPLD-GPFVSALARLARELGITV   77 (255)
T ss_pred             CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcchh--hHHhhhccCC-CHHHHHHHHHHHHcCeEE
Confidence            6899999989999999999999999999999999999999999976532  1233444443 578899999999999999


Q ss_pred             EEeeeeccC-CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCC-eeeEEeCCceEEEeeeecccCCcccc
Q 029167           91 PVSFFEEAN-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG-FKVGAWNNLNLNLICFFDLIFDDDFP  168 (198)
Q Consensus        91 v~g~~~~~~-~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~-~~~~~~~~~~ig~~IC~d~~~pe~~r  168 (198)
                      ++|++++.+ +++||++++|+++|+++++|+|.||++...+.|..+|++|+.. ..++.++++|+|++||||.+||+++|
T Consensus        78 v~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~G~~~~~~~~~~~~~kig~~IC~D~~~pe~~~  157 (255)
T cd07581          78 VAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAPGDELPPVVFVVGGVKVGLATCYDLRFPELAR  157 (255)
T ss_pred             EEEeeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCCCCCCCceEEecCCceEEEEEEecccCHHHHH
Confidence            999998865 4899999999999999999999999876566788899999873 45778888999999999999999999


Q ss_pred             cc--CCCCcccccc
Q 029167          169 SR--LDFPLPFLNR  180 (198)
Q Consensus       169 ~~--~~~~~~~~~~  180 (198)
                      .+  +|++++++++
T Consensus       158 ~~~~~ga~lil~ps  171 (255)
T cd07581         158 ALALAGADVIVVPA  171 (255)
T ss_pred             HHHHCCCcEEEECC
Confidence            85  8999998654

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases)

Probab=100.00  E-value=1.6e-33  Score=229.55  Aligned_cols=169  Identities=15%  Similarity=0.188  Sum_probs=137.9

Q ss_pred             cEEEEEeCCC-CCCH-------HHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhh-HHH-----------Hhc-
Q 029167            9 VVVSALQFAC-TDDV-------STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQRE-DFF-----------QRA-   67 (198)
Q Consensus         9 ~~ia~~Q~~~-~~~~-------~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~-~~~-----------~~a-   67 (198)
                      +++|+||... +.+.       ++|++++.+++++|+++|+|||||||++++||...+... .+.           ..+ 
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (299)
T cd07567           1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPDPEVNWNPCLD   80 (299)
T ss_pred             CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccccccccccccc
Confidence            4789999999 5555       899999999999999999999999999999998654211 000           000 


Q ss_pred             -CCCCCChHHHHHHHHHHHhCCEEEEeeeecc-----------C-CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccc
Q 029167           68 -KPYKDHPTILKMQELAKELGVVMPVSFFEEA-----------N-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKF  134 (198)
Q Consensus        68 -~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~-----------~-~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~  134 (198)
                       .....++.++.|+++|++++++|++|++++.           + +++|||+++|+++|+++++|+|.||+     .|..
T Consensus        81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-----~E~~  155 (299)
T cd07567          81 PDRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-----GEPG  155 (299)
T ss_pred             ccccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-----cccc
Confidence             0112257889999999999999999988763           2 36999999999999999999999996     3777


Q ss_pred             cccCCCCCeeeEEeCCc-eEEEeeeecccCCcccccc--C-CCCcccccc-cc
Q 029167          135 YFNPGDTGFKVGAWNNL-NLNLICFFDLIFDDDFPSR--L-DFPLPFLNR-FS  182 (198)
Q Consensus       135 ~~~~G~~~~~~~~~~~~-~ig~~IC~d~~~pe~~r~~--~-~~~~~~~~~-~~  182 (198)
                      +|.+|...+.+|+++++ |+|++||||++|||++|.+  . |++++++++ |.
T Consensus       156 ~~~~G~~~~~vf~t~~g~kiGvlICyD~~FPE~~r~la~~~GAdlil~paaw~  208 (299)
T cd07567         156 FDVPPEPEIVTFDTDFGVTFGIFTCFDILFKEPALELVKKLGVDDIVFPTAWF  208 (299)
T ss_pred             ccCCCCCCceEEECCCCCEEEEEEEeeccchHHHHHHHHhCCCCEEEECCccC
Confidence            89999643789999975 9999999999999999996  6 999998654 53

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking

>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=3.7e-33  Score=223.93  Aligned_cols=162  Identities=30%  Similarity=0.501  Sum_probs=140.8

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (198)
Q Consensus        10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i   88 (198)
                      |||++|.+. ..|++.|++++.+++++|.   +|||||||++++||.+.. ...+.+.++....++.++.++++|+++++
T Consensus         1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~~~-~~~~~~~~~~~~~~~~~~~l~~~a~~~~i   76 (259)
T cd07577           1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAFTS-KEEVASLAESIPDGPTTRFLQELARETGA   76 (259)
T ss_pred             CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCcCC-HHHHHHhhcccCCChHHHHHHHHHHHhCc
Confidence            699999999 6899999999999999883   999999999999998643 22344444433236889999999999999


Q ss_pred             EEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcccc
Q 029167           89 VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFP  168 (198)
Q Consensus        89 ~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r  168 (198)
                      ++++|++++.++++||++++|+++| ++++|+|.||++    .|..+|++|+..+++|+++++|+|++||||.+|||++|
T Consensus        77 ~ii~G~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~----~e~~~~~~G~~~~~~~~~~~~~ig~~IC~D~~fpe~~r  151 (259)
T cd07577          77 YIVAGLPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFY----EEKLFFEPGDTGFRVFDIGDIRIGVMICFDWYFPEAAR  151 (259)
T ss_pred             EEEecceeccCCceEEEEEEECCCc-cEeeEeeccCCh----hhhccccCCCCCCceEEeCCcEEEEEEEcCcccchHHH
Confidence            9999999988899999999999988 899999999976    47788999993389999999999999999999999999


Q ss_pred             cc--CCCCcccccc
Q 029167          169 SR--LDFPLPFLNR  180 (198)
Q Consensus       169 ~~--~~~~~~~~~~  180 (198)
                      .+  .|++++++++
T Consensus       152 ~~~~~Gadli~~ps  165 (259)
T cd07577         152 TLALKGADIIAHPA  165 (259)
T ss_pred             HHHHcCCCEEEECC
Confidence            86  8999998654

Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=100.00  E-value=7e-33  Score=223.33  Aligned_cols=163  Identities=21%  Similarity=0.255  Sum_probs=138.5

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167           10 VVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (198)
Q Consensus        10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i   88 (198)
                      |||++|++. ..+++.|++++.+++++|.++|+|+|||||++++||.+.+.   ..+.+.... .+.++.|++.++  ++
T Consensus         1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~~~---~~~~~~~~~-~~~~~~l~~~a~--~~   74 (269)
T cd07586           1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLGDL---VYEVAMHAD-DPRLQALAEASG--GI   74 (269)
T ss_pred             CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCchhh---hhhhhcccc-hHHHHHHHHHcC--CC
Confidence            699999998 68999999999999999999999999999999999986542   222232221 355556665552  89


Q ss_pred             EEEEeeeecc-CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCccc
Q 029167           89 VMPVSFFEEA-NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDF  167 (198)
Q Consensus        89 ~iv~g~~~~~-~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~  167 (198)
                      .+++|++++. ++++||++++| ++|+++++|+|.||++++.|.|..+|++|+. +++|+++++|+|++||||.+||++.
T Consensus        75 ~ii~G~~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~lp~~~~~~e~~~~~~G~~-~~vf~~~~~~ig~~IC~D~~fp~~~  152 (269)
T cd07586          75 CVVFGFVEEGRDGRFYNSAAYL-EDGRVVHVHRKVYLPTYGLFEEGRYFAPGSH-LRAFDTRFGRAGVLICEDAWHPSLP  152 (269)
T ss_pred             EEEEeCeEEcCCCcEEEEEEEe-cCCEEEEEEEeEeCCCCCccceeeeecCCCc-ceEEEeCCeEEEEEEEeccCCcHHH
Confidence            9999999886 48999999999 8999999999999988766778889999998 8999999999999999999999999


Q ss_pred             ccc--CCCCcccccc
Q 029167          168 PSR--LDFPLPFLNR  180 (198)
Q Consensus       168 r~~--~~~~~~~~~~  180 (198)
                      |.+  .|++++++|+
T Consensus       153 ~~~~~~ga~lil~ps  167 (269)
T cd07586         153 YLLALDGADVIFIPA  167 (269)
T ss_pred             HHHHHCCCCEEEEeC
Confidence            885  8999998654

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>COG0388 Predicted amidohydrolase [General function prediction only]

Probab=100.00  E-value=1.4e-32  Score=222.38  Aligned_cols=170  Identities=32%  Similarity=0.446  Sum_probs=142.4

Q ss_pred             ccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh
Q 029167            8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL   86 (198)
Q Consensus         8 ~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~   86 (198)
                      +||||++|++. ..|...|++++.+++++|+++|+|||||||++++||.+.+  ..+.+.+.....++.++.++++++++
T Consensus         2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~~~--~~~~~~~~~~~~~~~~~~l~~~a~~~   79 (274)
T COG0388           2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPCED--DLFLEEAAAEAGEETLEFLAALAEEG   79 (274)
T ss_pred             ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCccc--HHHHHhhhhccCChHHHHHHHHHHhC
Confidence            58999999998 8999999999999999999999999999999999999874  22333333334478999999999966


Q ss_pred             CCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcc
Q 029167           87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDD  166 (198)
Q Consensus        87 ~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~  166 (198)
                      ++.++.|...... ..||++++++++|++++.|+|.||++. .+.|+.+|.+|+....+|+++++|+|+.||||.+|||+
T Consensus        80 ~~~ivg~~~~~~~-~~~~~~~~i~~~G~ii~~y~K~hl~~~-~~~e~~~~~~G~~~~~v~~~~~~kig~~IC~D~~fPe~  157 (274)
T COG0388          80 GVIIVGGPLPERE-KLYNNAALIDPDGEILGKYRKLHLFDA-FYEERRFFTPGDEGVVVFETDGGKIGLLICYDLRFPEL  157 (274)
T ss_pred             CeEEEEeeeeccc-cceeeEEEEcCCCcEEeEEeeecCCCC-ccchhhhccCCCccceeEEeCCceEEEEEEeeccCHHH
Confidence            6666655443333 889999999899999999999999986 56788999999983369999999999999999999998


Q ss_pred             cccc---CCCCccccccc
Q 029167          167 FPSR---LDFPLPFLNRF  181 (198)
Q Consensus       167 ~r~~---~~~~~~~~~~~  181 (198)
                      +|.+   .|++++++|+.
T Consensus       158 ~~~~~a~~Gaeii~~p~a  175 (274)
T COG0388         158 ARRLLALGGAELLLVPAA  175 (274)
T ss_pred             HHHHHHhcCCeEEEEcCC
Confidence            8863   78999986543

>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

Probab=100.00  E-value=2.1e-32  Score=218.11  Aligned_cols=166  Identities=34%  Similarity=0.524  Sum_probs=143.9

Q ss_pred             EEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCE
Q 029167           11 VSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV   89 (198)
Q Consensus        11 ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~   89 (198)
                      ||++|+++ ..+.++|++++.+.+++|.++|+|+|||||++++||......... ..+... .....+.++++|++++++
T Consensus         1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~~~~~~-~~~~~~-~~~~~~~l~~~a~~~~i~   78 (253)
T cd07197           1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFESAKEDL-DLAEEL-DGPTLEALAELAKELGIY   78 (253)
T ss_pred             CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCccccchhhh-hhcccC-CchHHHHHHHHHHHhCeE
Confidence            68999999 699999999999999999999999999999999998765421110 112222 257899999999999999


Q ss_pred             EEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCccccc
Q 029167           90 MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFPS  169 (198)
Q Consensus        90 iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~r~  169 (198)
                      +++|++++.++++||++++++++|+++.+|+|.||++   +.|..+|++|+. ..+|+++++|+|++||+|.+||+.+|.
T Consensus        79 ii~G~~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~---~~E~~~~~~g~~-~~~f~~~~~~ig~~IC~d~~~~~~~~~  154 (253)
T cd07197          79 IVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFD---FGERRYFSPGDE-FPVFDTPGGKIGLLICYDLRFPELARE  154 (253)
T ss_pred             EEeeeEEccCCceEEEEEEECCCCeEEEEEEEeecCC---CcccceecCCCC-CceEEcCCceEEEEEEecCCCcHHHHH
Confidence            9999999888899999999999999999999999998   357788999998 899999999999999999999999887


Q ss_pred             c--CCCCcccccccc
Q 029167          170 R--LDFPLPFLNRFS  182 (198)
Q Consensus       170 ~--~~~~~~~~~~~~  182 (198)
                      +  +|+|+++++++.
T Consensus       155 ~~~~g~dli~~ps~~  169 (253)
T cd07197         155 LALKGADIILVPAAW  169 (253)
T ss_pred             HHHCCCcEEEECCcC
Confidence            5  889999876543

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)

Probab=100.00  E-value=3.3e-32  Score=221.85  Aligned_cols=164  Identities=22%  Similarity=0.189  Sum_probs=138.1

Q ss_pred             cEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHh--CCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHH
Q 029167            9 VVVSALQFAC-----TDDVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE   81 (198)
Q Consensus         9 ~~ia~~Q~~~-----~~~~~~n~~~i~~~i~~A~~--~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~   81 (198)
                      ++||++|+++     ..+++.|++++.+++++|++  +|+|||||||++++||....  ....+.++..+ ++.++.+++
T Consensus         1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~~--~~~~~~a~~~~-~~~~~~l~~   77 (291)
T cd07565           1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDK--WTMDETACTVP-GPETDIFAE   77 (291)
T ss_pred             CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCCc--chhhhhccCCC-ChhHHHHHH
Confidence            4799999997     47899999999999999986  59999999999999987532  12334454444 688999999


Q ss_pred             HHHHhCCEEEEeeeeccC---CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeC-CceEEEee
Q 029167           82 LAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWN-NLNLNLIC  157 (198)
Q Consensus        82 ~a~~~~i~iv~g~~~~~~---~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~ig~~I  157 (198)
                      +|+++++.+++|+.++.+   +++||++++|+++|+++++|+|.||..     +...|.+|+...++|++. |.|+|++|
T Consensus        78 lA~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~-----~~e~~~~G~~~~~v~~~~~g~riG~~I  152 (291)
T cd07565          78 ACKEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWV-----PIEPWYPGDLGTPVCEGPKGSKIALII  152 (291)
T ss_pred             HHHHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCC-----CcccccCCCCCceeeECCCCCEEEEEE
Confidence            999999999999887753   689999999999999999999999853     223578998657888885 67999999


Q ss_pred             eecccCCcccccc--CCCCcccccc
Q 029167          158 FFDLIFDDDFPSR--LDFPLPFLNR  180 (198)
Q Consensus       158 C~d~~~pe~~r~~--~~~~~~~~~~  180 (198)
                      |||.+|||++|.+  +||+++++++
T Consensus       153 CyD~~fPe~~r~la~~GAdill~ps  177 (291)
T cd07565         153 CHDGMYPEIARECAYKGAELIIRIQ  177 (291)
T ss_pred             EcCCCCcHHHHHHHHCCCeEEEECC
Confidence            9999999999995  8999999875

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic

>PRK02628 nadE NAD synthetase; Reviewed

Probab=100.00  E-value=2e-32  Score=244.64  Aligned_cols=171  Identities=20%  Similarity=0.176  Sum_probs=145.6

Q ss_pred             CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhh--hHHHHhcCCCCCChHHHHHHHHH
Q 029167            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR--EDFFQRAKPYKDHPTILKMQELA   83 (198)
Q Consensus         7 ~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~--~~~~~~a~~~~~~~~~~~l~~~a   83 (198)
                      +.||||++|+++ ..|++.|++++.+++++|+++|+|||||||++++||.+.+..  ..+.+.     ..+.++.|++++
T Consensus        11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~~dl~~~~~~~~~-----~~~~l~~L~~~a   85 (679)
T PRK02628         11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSCDDLFLQDTLLDA-----VEDALATLVEAS   85 (679)
T ss_pred             CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCcchhhccHHHHHh-----hHHHHHHHHHHH
Confidence            469999999999 699999999999999999999999999999999999987641  122211     136788999999


Q ss_pred             HHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCe----------------eeEE
Q 029167           84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF----------------KVGA  147 (198)
Q Consensus        84 ~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~----------------~~~~  147 (198)
                      +++++.+++|++++.++++||++++|+ +|++++.|+|.||+.++.|.|.++|++|+...                .+|+
T Consensus        86 ~~~~i~ivvG~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~~~~~~~g~~vpfG~~~vf~  164 (679)
T PRK02628         86 ADLDPLLVVGAPLRVRHRLYNCAVVIH-RGRILGVVPKSYLPNYREFYEKRWFAPGDGARGETIRLCGQEVPFGTDLLFE  164 (679)
T ss_pred             hhcCEEEEEeeEEEECCEEEEEEEEEc-CCEEEEEeccccCCCCCcccccccccCCCCCCCceEeecCeeeccCCceeEE
Confidence            999999999999888889999999996 79999999999999988889999999998621                2465


Q ss_pred             e---CCceEEEeeeecccCCccc-ccc--CCCCccccccccc
Q 029167          148 W---NNLNLNLICFFDLIFDDDF-PSR--LDFPLPFLNRFSK  183 (198)
Q Consensus       148 ~---~~~~ig~~IC~d~~~pe~~-r~~--~~~~~~~~~~~~~  183 (198)
                      +   ++.|+|+.||||+||||.. +.+  .||+++++++.+.
T Consensus       165 ~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp  206 (679)
T PRK02628        165 AEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASN  206 (679)
T ss_pred             ecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCC
Confidence            5   6899999999999999985 543  8999999755443

>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases)

Probab=100.00  E-value=2e-32  Score=221.05  Aligned_cols=157  Identities=17%  Similarity=0.195  Sum_probs=139.7

Q ss_pred             cEEEEEeCCC-CC------CHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHH
Q 029167            9 VVVSALQFAC-TD------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE   81 (198)
Q Consensus         9 ~~ia~~Q~~~-~~------~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~   81 (198)
                      +|||++|+++ ..      +.++|++++.+++++|+++|+|+|||||++++||...              .++.++.+++
T Consensus         1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~~~--------------~~~~~~~l~~   66 (270)
T cd07571           1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQR--------------DPDALARLAR   66 (270)
T ss_pred             CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCccccc--------------CHHHHHHHHH
Confidence            5899999998 33      7899999999999999999999999999999988521              2578899999


Q ss_pred             HHHHhCCEEEEeeeeccC--CeeEEEEEEEcCCCCeeeeeeeccCCCCCCC---------------CccccccCCCCCee
Q 029167           82 LAKELGVVMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGPGY---------------QEKFYFNPGDTGFK  144 (198)
Q Consensus        82 ~a~~~~i~iv~g~~~~~~--~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~---------------~e~~~~~~G~~~~~  144 (198)
                      +|+++++++++|++++.+  +++||++++|+++|+++++|+|.||+++.++               .|..+|.+|+. .+
T Consensus        67 ~ak~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~~e~~~~~~G~~-~~  145 (270)
T cd07571          67 AARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTG-PQ  145 (270)
T ss_pred             HHHhcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcccccCCCCCCCC-CC
Confidence            999999999999998765  4899999999999999999999999987653               35678999998 89


Q ss_pred             eEEeCC-ceEEEeeeecccCCcccccc--CCCCcccccc
Q 029167          145 VGAWNN-LNLNLICFFDLIFDDDFPSR--LDFPLPFLNR  180 (198)
Q Consensus       145 ~~~~~~-~~ig~~IC~d~~~pe~~r~~--~~~~~~~~~~  180 (198)
                      +|++++ +|+|++||||.+|||.+|.+  +|++++++++
T Consensus       146 vf~~~~~~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ps  184 (270)
T cd07571         146 PLLLGGGVRVGPLICYESIFPELVRDAVRQGADLLVNIT  184 (270)
T ss_pred             ccccCCCceEEEEEEeeeeChHHHHhhcccCCCEEEEcC
Confidence            999999 99999999999999999986  7999998765

ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.

>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases)

Probab=100.00  E-value=2.2e-32  Score=221.73  Aligned_cols=168  Identities=20%  Similarity=0.235  Sum_probs=137.9

Q ss_pred             cEEEEEeCCC-C-CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCc---chhh--hHHHHhcCCCCCChHHHHHHH
Q 029167            9 VVVSALQFAC-T-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFC---QAQR--EDFFQRAKPYKDHPTILKMQE   81 (198)
Q Consensus         9 ~~ia~~Q~~~-~-~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~---~~~~--~~~~~~a~~~~~~~~~~~l~~   81 (198)
                      ||||++|+++ . .+.++|++++++++++|+++|+|||||||++++||..   ....  .+........ .+..++.+++
T Consensus         1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~   79 (280)
T cd07574           1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSLLPEAIDGLDEAIRALAAL-TPDYVALFSE   79 (280)
T ss_pred             CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHhCCcccccHHHHHHHHHHH-HHHHHHHHHH
Confidence            7999999998 3 7999999999999999999999999999999987521   1110  1111111111 1578899999


Q ss_pred             HHHHhCCEEEEee-eeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeec
Q 029167           82 LAKELGVVMPVSF-FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFD  160 (198)
Q Consensus        82 ~a~~~~i~iv~g~-~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d  160 (198)
                      +|++++++|++|. +++.++++||++++++++|.+ ++|+|.||++++  .+...+.+|+. +.+|+++++|+|++||||
T Consensus        80 ~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e--~~~~~~~~G~~-~~v~~~~~~~ig~~IC~D  155 (280)
T cd07574          80 LARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFE--REEWGISGGDK-LKVFDTDLGKIGILICYD  155 (280)
T ss_pred             HHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchh--hhcccccCCCC-ceEEecCCccEEEEEecc
Confidence            9999999999985 566788999999999999987 999999998853  23345789998 899999999999999999


Q ss_pred             ccCCcccccc--CCCCccccccc
Q 029167          161 LIFDDDFPSR--LDFPLPFLNRF  181 (198)
Q Consensus       161 ~~~pe~~r~~--~~~~~~~~~~~  181 (198)
                      .+||+++|.+  +|+++++++++
T Consensus       156 ~~fpe~~r~l~~~ga~ii~~ps~  178 (280)
T cd07574         156 SEFPELARALAEAGADLLLVPSC  178 (280)
T ss_pred             cccHHHHHHHHHcCCCEEEECCc
Confidence            9999999986  89999998764

Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK13981 NAD synthetase; Provisional

Probab=99.98  E-value=8.2e-32  Score=236.13  Aligned_cols=164  Identities=23%  Similarity=0.285  Sum_probs=143.9

Q ss_pred             cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh--hhHHHHhcCCCCCChHHHHHHHHHHH
Q 029167            9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ--REDFFQRAKPYKDHPTILKMQELAKE   85 (198)
Q Consensus         9 ~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~--~~~~~~~a~~~~~~~~~~~l~~~a~~   85 (198)
                      ||||++|+++ .+|++.|++++.+++++|+++|+|||||||++++||.+.+.  .+.+.        ....+.+++++++
T Consensus         1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~d~~~~~~~~--------~~~~~~l~~La~~   72 (540)
T PRK13981          1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPEDLLLRPAFL--------AACEAALERLAAA   72 (540)
T ss_pred             CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChhhhhcCHHHH--------HHHHHHHHHHHHh
Confidence            7999999999 79999999999999999999999999999999999987642  11111        1334567777776


Q ss_pred             --hCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccC
Q 029167           86 --LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIF  163 (198)
Q Consensus        86 --~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~  163 (198)
                        +++.+++|++++.++++||++++|+ +|++++.|+|+||++++.|.|..+|++|+. ..+|+++++|+|++||+|.+|
T Consensus        73 ~~~~i~ii~G~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~~~~~E~~~f~~G~~-~~~~~~~g~rigv~IC~D~~~  150 (540)
T PRK13981         73 TAGGPAVLVGHPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYGVFDEKRYFAPGPE-PGVVELKGVRIGVPICEDIWN  150 (540)
T ss_pred             cCCCCEEEEeCcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCCCCcCccccccCCCC-ceEEEECCEEEEEEEehhhcC
Confidence              7999999999888889999999997 899999999999999988899999999998 889999999999999999999


Q ss_pred             Ccccccc--CCCCcccccccc
Q 029167          164 DDDFPSR--LDFPLPFLNRFS  182 (198)
Q Consensus       164 pe~~r~~--~~~~~~~~~~~~  182 (198)
                      |+++|.+  .|++++++++.+
T Consensus       151 pe~~r~la~~Gadlil~psa~  171 (540)
T PRK13981        151 PEPAETLAEAGAELLLVPNAS  171 (540)
T ss_pred             CcHHHHHHHCCCcEEEEcCCC
Confidence            9999886  899999875543

>PLN02339 NAD+ synthase (glutamine-hydrolysing)

Probab=99.98  E-value=3.2e-32  Score=243.23  Aligned_cols=174  Identities=13%  Similarity=0.051  Sum_probs=140.7

Q ss_pred             CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHH
Q 029167            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE   85 (198)
Q Consensus         7 ~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~   85 (198)
                      +.||||++|++. .+|++.|.+++.+.+++|+++|||||||||++++||.+.+.   +.+.+......+.+..|.+.+++
T Consensus         2 ~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~~Dl---~~~~~~~~~~~~~L~~La~~a~~   78 (700)
T PLN02339          2 RLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGCEDH---FLELDTVTHSWECLAEILVGDLT   78 (700)
T ss_pred             ceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCChHHH---hhChhHHHHHHHHHHHHHhhccc
Confidence            479999999999 58999999999999999999999999999999999998653   11111100002334444444456


Q ss_pred             hCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCC-----------------------
Q 029167           86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG-----------------------  142 (198)
Q Consensus        86 ~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~-----------------------  142 (198)
                      +++.+++|+++..++++||+++++ .+|++++.|+|.||++++.|.|.++|++|+..                       
T Consensus        79 ~~i~vvvG~p~~~~~~lYN~a~vi-~~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~~~~~~~g~~~vpf  157 (700)
T PLN02339         79 DGILCDIGMPVIHGGVRYNCRVFC-LNRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPEEIAEATSQKSVPF  157 (700)
T ss_pred             CCeEEEEeeeEEECCeEEEEEEEE-eCCEEEEEEecccCCCCCccccccccccCccCCcceeeccccchhhccCCceecc
Confidence            799999999988788999999999 58999999999999999889999999998621                       


Q ss_pred             -eeeEEeCCceEEEeeeecccCCccccc-c--CCCCcccccccccc
Q 029167          143 -FKVGAWNNLNLNLICFFDLIFDDDFPS-R--LDFPLPFLNRFSKL  184 (198)
Q Consensus       143 -~~~~~~~~~~ig~~IC~d~~~pe~~r~-~--~~~~~~~~~~~~~~  184 (198)
                       ..+|++++.++|+.||||+|||+..+. +  .||+++++++.+..
T Consensus       158 g~~~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~  203 (700)
T PLN02339        158 GDGYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHH  203 (700)
T ss_pred             CcceeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChh
Confidence             124456688999999999999999885 4  89999998776544

>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases)

Probab=99.98  E-value=1.1e-31  Score=218.89  Aligned_cols=171  Identities=22%  Similarity=0.234  Sum_probs=133.2

Q ss_pred             EEEEEeCCC-CCCHHHHHHHHHHHHHHHHh----CCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHH
Q 029167           10 VVSALQFAC-TDDVSTNLATAERLVRAAHG----KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAK   84 (198)
Q Consensus        10 ~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~----~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~   84 (198)
                      |||++|+++ ..|+++|++++.+++++|.+    +|+|||||||++++||...+. .+....++....++..+.++++|+
T Consensus         1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~~~~-~~~~~~ae~~~~g~~~~~l~~lAk   79 (295)
T cd07566           1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNFHSL-EHIKPYLEPTTSGPSFEWAREVAK   79 (295)
T ss_pred             CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCcccH-HHHHHHHHhcCCCHHHHHHHHHHH
Confidence            699999998 58999999999999999988    899999999999999976432 122222332223688899999999


Q ss_pred             HhCCEEEEeeeeccC---CeeEEEEEEEcCCCCeeeeeeeccCCCCCC---CCcc-cccc------CCCCCee-eEEeCC
Q 029167           85 ELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG---YQEK-FYFN------PGDTGFK-VGAWNN  150 (198)
Q Consensus        85 ~~~i~iv~g~~~~~~---~~~yNs~~~i~~~G~il~~y~K~~l~~~~~---~~e~-~~~~------~G~~~~~-~~~~~~  150 (198)
                      +++++|++|++++.+   +++|||+++|+++|+++++|+|.||++..+   +.|. ..+.      +|+.... .+...+
T Consensus        80 ~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~~~e~~~~~~~~~~~~~G~~~~~~~~~~~~  159 (295)
T cd07566          80 KFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWGCEENPGGFQTFPLPFAKDDDFDGGSVDVT  159 (295)
T ss_pred             hcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccccCCCCCccccccccccccccccccccCCc
Confidence            999999999988754   489999999999999999999999986421   1122 1222      6765222 233358


Q ss_pred             ceEEEeeeeccc---C--C----cccccc--CCCCccccc-cc
Q 029167          151 LNLNLICFFDLI---F--D----DDFPSR--LDFPLPFLN-RF  181 (198)
Q Consensus       151 ~~ig~~IC~d~~---~--p----e~~r~~--~~~~~~~~~-~~  181 (198)
                      +|+|+.||||++   |  |    |++|.+  .||+++++| .|
T Consensus       160 ~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw  202 (295)
T cd07566         160 LKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAW  202 (295)
T ss_pred             ceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechh
Confidence            899999999996   8  6    999985  899999864 44

Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.

>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=99.97  E-value=4e-31  Score=215.85  Aligned_cols=170  Identities=22%  Similarity=0.249  Sum_probs=137.5

Q ss_pred             EEEEEeCCC-----CCCHHHHHHHHHHHHHHHHh-----CCCcEEEeCCCCCCccCcchhhh--HHHHhcCCCCCChHHH
Q 029167           10 VVSALQFAC-----TDDVSTNLATAERLVRAAHG-----KGANIILIQELFEGYYFCQAQRE--DFFQRAKPYKDHPTIL   77 (198)
Q Consensus        10 ~ia~~Q~~~-----~~~~~~n~~~i~~~i~~A~~-----~g~dlvv~PE~~~~g~~~~~~~~--~~~~~a~~~~~~~~~~   77 (198)
                      +++++|+..     ..|++.|++++.+++++|++     +|+|||||||++++||.+.+...  .+.+.++..+ ++.++
T Consensus         2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~~~~~~~~~~~~a~~~~-~~~~~   80 (294)
T cd07582           2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMGEPREVWQFDKAAIDIP-GPETE   80 (294)
T ss_pred             eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcccchhhhhhhhccccCC-CHHHH
Confidence            578889888     27899999999999999987     47999999999999998754311  1345555554 68999


Q ss_pred             HHHHHHHHhCCEEEEeeeeccC---CeeEEEEEEEcCCCCeeeeeeeccCCCCCC-------CCc-cccccCC-CCCeee
Q 029167           78 KMQELAKELGVVMPVSFFEEAN---NAHYNSIAIIDADGSDLGLYRKSHIPDGPG-------YQE-KFYFNPG-DTGFKV  145 (198)
Q Consensus        78 ~l~~~a~~~~i~iv~g~~~~~~---~~~yNs~~~i~~~G~il~~y~K~~l~~~~~-------~~e-~~~~~~G-~~~~~~  145 (198)
                      .|+++|++++++|++|..++.+   +++||++++|+++|++++.|+|.||+...+       +.+ ..++.+| ...+++
T Consensus        81 ~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~~~g~g~~~~~~v  160 (294)
T cd07582          81 ALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIEVYGYGLDALFPV  160 (294)
T ss_pred             HHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcccCCCccccccee
Confidence            9999999999999999887653   689999999999999999999999975311       111 1234555 333689


Q ss_pred             EEeCCceEEEeeeecccCCcccccc--CCCCcccccc
Q 029167          146 GAWNNLNLNLICFFDLIFDDDFPSR--LDFPLPFLNR  180 (198)
Q Consensus       146 ~~~~~~~ig~~IC~d~~~pe~~r~~--~~~~~~~~~~  180 (198)
                      ++++++|+|++||||.+|||.+|.+  .|++++++++
T Consensus       161 ~~~~~~~iG~~ICyD~~fpe~~r~la~~Gadlil~ps  197 (294)
T cd07582         161 ADTEIGNLGCLACEEGLYPEVARGLAMNGAEVLLRSS  197 (294)
T ss_pred             ecCCCceEEEEEeecccChHHHHHHHHCCCcEEEEcC
Confidence            9999999999999999999999985  8999998654

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK13287 amiF formamidase; Provisional

Probab=99.97  E-value=3e-30  Score=213.56  Aligned_cols=167  Identities=19%  Similarity=0.175  Sum_probs=137.7

Q ss_pred             CCccEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHhC--CCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHH
Q 029167            6 RREVVVSALQFAC-----TDDVSTNLATAERLVRAAHGK--GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK   78 (198)
Q Consensus         6 ~~~~~ia~~Q~~~-----~~~~~~n~~~i~~~i~~A~~~--g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~   78 (198)
                      .+++|||++|+++     ..++++|++++.+++++|++.  |+|||||||++++||....+.  ..+.+...+ ++.++.
T Consensus        11 ~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~~~--~~~~a~~~~-g~~~~~   87 (333)
T PRK13287         11 IEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKKWT--TEEFLCTVD-GPEVDA   87 (333)
T ss_pred             CCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccccc--hhhhcccCC-CHHHHH
Confidence            3679999999997     378999999999999999864  899999999999999764321  123344443 678999


Q ss_pred             HHHHHHHhCCEEEEeeeecc-CC-eeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeC-CceEEE
Q 029167           79 MQELAKELGVVMPVSFFEEA-NN-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWN-NLNLNL  155 (198)
Q Consensus        79 l~~~a~~~~i~iv~g~~~~~-~~-~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~ig~  155 (198)
                      ++++|+++++++++|..++. ++ ++|||+++|+++|+++++|+|.||..     ....|++|+...++|+++ |.|+|+
T Consensus        88 l~~~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~-----p~~~~~pG~~~~~v~~~~~g~kiG~  162 (333)
T PRK13287         88 FAQACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWV-----PVEPWEPGDLGIPVCDGPGGSKLAV  162 (333)
T ss_pred             HHHHHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccCC-----ccccccCCCCCCceEECCCCceEEE
Confidence            99999999999999987764 33 39999999999999999999999742     234578998437899986 569999


Q ss_pred             eeeecccCCcccccc--CCCCcccccc
Q 029167          156 ICFFDLIFDDDFPSR--LDFPLPFLNR  180 (198)
Q Consensus       156 ~IC~d~~~pe~~r~~--~~~~~~~~~~  180 (198)
                      +||||.+|||++|.+  +||+++++++
T Consensus       163 ~ICyD~~fPe~~R~~a~~GAeill~~s  189 (333)
T PRK13287        163 CICHDGMFPEMAREAAYKGANVMIRIS  189 (333)
T ss_pred             EEEecccchHHHHHHHHCCCeEEEECC
Confidence            999999999999995  8999998765

>PRK13286 amiE acylamide amidohydrolase; Provisional

Probab=99.97  E-value=2.3e-30  Score=214.79  Aligned_cols=166  Identities=17%  Similarity=0.174  Sum_probs=136.0

Q ss_pred             CCccEEEEEeCCC-----CCCHHHHHHHHHHHHHHHH--hCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHH
Q 029167            6 RREVVVSALQFAC-----TDDVSTNLATAERLVRAAH--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK   78 (198)
Q Consensus         6 ~~~~~ia~~Q~~~-----~~~~~~n~~~i~~~i~~A~--~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~   78 (198)
                      ...++||++|.+.     ..++.+|++++.+.+++|+  ..|+|||||||++++||....  .++.+.+..++ ++..+.
T Consensus        10 ~~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~~--~~~~~~a~~i~-g~~~~~   86 (345)
T PRK13286         10 NDTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYDR--QEMYETASTIP-GEETAI   86 (345)
T ss_pred             CCceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcCh--HHHHHhcccCC-CHHHHH
Confidence            4569999999985     3678999999999999987  458999999999999965432  23455566555 688899


Q ss_pred             HHHHHHHhCCEEEEeee-ec----cCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeC-Cce
Q 029167           79 MQELAKELGVVMPVSFF-EE----ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWN-NLN  152 (198)
Q Consensus        79 l~~~a~~~~i~iv~g~~-~~----~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~-~~~  152 (198)
                      ++++|+++++++++|.. +.    .++++||++++|+++|+++++|+|.|++.     +...|.+|+. ..+|+++ |.|
T Consensus        87 l~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~-----~~e~~~pG~~-~~v~~~~~G~k  160 (345)
T PRK13286         87 FAEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWC-----PIEGWYPGDC-TYVSEGPKGLK  160 (345)
T ss_pred             HHHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCc-----hhhceecCCC-CEEEeCCCCcE
Confidence            99999999999988766 33    13569999999999999999999999754     3356789998 7898986 569


Q ss_pred             EEEeeeecccCCcccccc--CCCCcccccc
Q 029167          153 LNLICFFDLIFDDDFPSR--LDFPLPFLNR  180 (198)
Q Consensus       153 ig~~IC~d~~~pe~~r~~--~~~~~~~~~~  180 (198)
                      +|++||||.+|||++|.+  .||+++++++
T Consensus       161 iG~lIC~D~~fPE~~R~la~~GAelii~ps  190 (345)
T PRK13286        161 ISLIICDDGNYPEIWRDCAMKGAELIVRCQ  190 (345)
T ss_pred             EEEEEEecccChHHHHHHHHcCCeEEEEcc
Confidence            999999999999988885  8888887643

>TIGR00546 lnt apolipoprotein N-acyltransferase

Probab=99.96  E-value=2.9e-29  Score=212.33  Aligned_cols=159  Identities=14%  Similarity=0.123  Sum_probs=134.0

Q ss_pred             CccEEEEEeCCCCC-------CHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHH
Q 029167            7 REVVVSALQFACTD-------DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM   79 (198)
Q Consensus         7 ~~~~ia~~Q~~~~~-------~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l   79 (198)
                      +++|||++|+++..       +.++|++++.+++++|.+ ++|+|||||++++++....             .....+.+
T Consensus       158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~~~-------------~~~~~~~l  223 (391)
T TIGR00546       158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLENS-------------PQKLADRL  223 (391)
T ss_pred             CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchhhC-------------cHHHHHHH
Confidence            56999999999932       357889999999988876 8999999999998764211             12367889


Q ss_pred             HHHHHHhCCEEEEeeeeccCC---eeEEEEEEEcCCCCeeeeeeeccCCCCCCCCc----------------cccccCCC
Q 029167           80 QELAKELGVVMPVSFFEEANN---AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE----------------KFYFNPGD  140 (198)
Q Consensus        80 ~~~a~~~~i~iv~g~~~~~~~---~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e----------------~~~~~~G~  140 (198)
                      +++++++++.+++|.++..++   ++|||+++++++|+++.+|+|+||+|++|+..                ...|++|+
T Consensus       224 ~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~~~~~~~~~~~~~~G~  303 (391)
T TIGR00546       224 KLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLSKLFFLLSQEDFSRGP  303 (391)
T ss_pred             HHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHHHHhccCCccCCCCCC
Confidence            999999999999999876543   79999999999999999999999999877532                24688998


Q ss_pred             CCeeeEEeCCceEEEeeeecccCCcccccc--CCCCcccccc
Q 029167          141 TGFKVGAWNNLNLNLICFFDLIFDDDFPSR--LDFPLPFLNR  180 (198)
Q Consensus       141 ~~~~~~~~~~~~ig~~IC~d~~~pe~~r~~--~~~~~~~~~~  180 (198)
                      + .++++++++|+|++||||.+|||+.|.+  +|+|++++++
T Consensus       304 ~-~~~~~~~~~~~g~~ICyE~~fp~~~r~~~~~Ga~~lv~~s  344 (391)
T TIGR00546       304 G-PQVLKLPGGKIAPLICYESIFPDLVRASARQGAELLVNLT  344 (391)
T ss_pred             C-CCCCcCCCceeeeeEEeehhchHHHHhhccCCCCEEEEec
Confidence            8 8999999999999999999999999995  7899998644

This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.

>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.95  E-value=3.9e-27  Score=182.45  Aligned_cols=172  Identities=23%  Similarity=0.275  Sum_probs=148.1

Q ss_pred             ccEEEEEeCCC----CCC----HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccC-cchhhhHHHHhcCCCCCChHHHH
Q 029167            8 EVVVSALQFAC----TDD----VSTNLATAERLVRAAHGKGANIILIQELFEGYYF-CQAQREDFFQRAKPYKDHPTILK   78 (198)
Q Consensus         8 ~~~ia~~Q~~~----~~~----~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~-~~~~~~~~~~~a~~~~~~~~~~~   78 (198)
                      .+||+++|-.+    ...    .+...+++...++.|+.+|+++|+|.|.|..+|. |...+-.|.+++++++.+++.+.
T Consensus        73 ~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~f  152 (387)
T KOG0808|consen   73 VVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTKF  152 (387)
T ss_pred             EEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHHH
Confidence            48999999988    233    3455567777888888999999999999998874 56556678999999999999999


Q ss_pred             HHHHHHHhCCEEEEeeeecc---CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEE
Q 029167           79 MQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNL  155 (198)
Q Consensus        79 l~~~a~~~~i~iv~g~~~~~---~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~  155 (198)
                      ++++|+++++.|+....+++   ++.++|++++|+.+|.++++.+|.|.|..+.|.|+.+|..|+.+.++|++..+||++
T Consensus       153 lqklakkhdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~lghpvfet~fgriav  232 (387)
T KOG0808|consen  153 LQKLAKKHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGDLGHPVFETVFGRIAV  232 (387)
T ss_pred             HHHHHhhCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecCCCCceeeeecceEEE
Confidence            99999999999999988874   578999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccCCcccccc--CCCCccccc
Q 029167          156 ICFFDLIFDDDFPSR--LDFPLPFLN  179 (198)
Q Consensus       156 ~IC~d~~~pe~~r~~--~~~~~~~~~  179 (198)
                      .|||--++|..+-.+  +||+++|+|
T Consensus       233 nicygrhhplnwlmy~lngaeiifnp  258 (387)
T KOG0808|consen  233 NICYGRHHPLNWLMYGLNGAEIIFNP  258 (387)
T ss_pred             EeeccCCCchhhhhhhccCceEEECC
Confidence            999999999944442  455555543

>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.95  E-value=1.2e-27  Score=183.20  Aligned_cols=166  Identities=23%  Similarity=0.308  Sum_probs=141.3

Q ss_pred             cEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCC
Q 029167            9 VVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGV   88 (198)
Q Consensus         9 ~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i   88 (198)
                      -+||++|...+.|...|++...+++.+|+.+||++|.|||.+-  |.... +.+-.+.++.++ ++..+..+++|++++|
T Consensus        16 ~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~d--Fi~~n-~~esi~Lae~l~-~k~m~~y~elar~~nI   91 (295)
T KOG0807|consen   16 KRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFD--FIGQN-PLESIELAEPLD-GKFMEQYRELARSHNI   91 (295)
T ss_pred             ceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhh--hhcCC-cccceecccccC-hHHHHHHHHHHHhcCe
Confidence            7899999999999999999999999999999999999999764  22211 223334566654 8999999999999999


Q ss_pred             EEEEeee-eccC---CeeEEEEEEEcCCCCeeeeeeeccCCC-----CCCCCccccccCCCCCeeeEEeCCceEEEeeee
Q 029167           89 VMPVSFF-EEAN---NAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFF  159 (198)
Q Consensus        89 ~iv~g~~-~~~~---~~~yNs~~~i~~~G~il~~y~K~~l~~-----~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~  159 (198)
                      ++.+|-. ++.+   .+++|+.++|+.+|+++..|+|.||++     .+.+.|+....||+...++++++-+|+|..|||
T Consensus        92 wlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t~pG~~i~~pv~tP~GklGlaICY  171 (295)
T KOG0807|consen   92 WLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTTQPGTAIESPVDTPLGKLGLAICY  171 (295)
T ss_pred             eEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCcCCCcccCCccCCcccccceeeee
Confidence            9988655 4433   689999999999999999999999953     455789999999999778899999999999999


Q ss_pred             cccCCcccccc--CCCCcccc
Q 029167          160 DLIFDDDFPSR--LDFPLPFL  178 (198)
Q Consensus       160 d~~~pe~~r~~--~~~~~~~~  178 (198)
                      |++|||++..+  .||+++-.
T Consensus       172 DiRFpE~sl~LR~~gA~iLty  192 (295)
T KOG0807|consen  172 DIRFPELSLKLRKMGAQILTY  192 (295)
T ss_pred             eccCchHHHHHHHcCCcEEec
Confidence            99999999986  89998854

>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed

Probab=99.95  E-value=3.8e-27  Score=205.32  Aligned_cols=159  Identities=19%  Similarity=0.174  Sum_probs=129.4

Q ss_pred             CccEEEEEeCCCC-------CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHH
Q 029167            7 REVVVSALQFACT-------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM   79 (198)
Q Consensus         7 ~~~~ia~~Q~~~~-------~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l   79 (198)
                      +++|||++|+++.       .+.++|++++.+.++++ ++++|+|||||.+++++. .+            ..++..+.+
T Consensus       218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~-~~------------~~~~~~~~l  283 (505)
T PRK00302        218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLL-ED------------LPQAFLKAL  283 (505)
T ss_pred             CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccccccc-cc------------ccHHHHHHH
Confidence            4699999999993       24567888888888854 568999999999987652 11            013566789


Q ss_pred             HHHHHHhCCEEEEeeeeccC---C-eeEEEEEEEcCCCCeeeeeeeccCCCCCCCCc---------------cccccCCC
Q 029167           80 QELAKELGVVMPVSFFEEAN---N-AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE---------------KFYFNPGD  140 (198)
Q Consensus        80 ~~~a~~~~i~iv~g~~~~~~---~-~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e---------------~~~~~~G~  140 (198)
                      +++++++++++++|.+++.+   + ++||+++++++ |+++.+|+|+||+|+++|..               ...|++|+
T Consensus       284 ~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~~~~~~~~~~~~~G~  362 (505)
T PRK00302        284 DDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLAPFFNLPMGDFSRGP  362 (505)
T ss_pred             HHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHHHhcCCCcCCCCCCC
Confidence            99999999999999887543   3 69999999988 88899999999999877532               12689998


Q ss_pred             CCeeeEEeCCceEEEeeeecccCCcccccc--CCCCcccccc
Q 029167          141 TGFKVGAWNNLNLNLICFFDLIFDDDFPSR--LDFPLPFLNR  180 (198)
Q Consensus       141 ~~~~~~~~~~~~ig~~IC~d~~~pe~~r~~--~~~~~~~~~~  180 (198)
                      ...++++++++|+|++||||.+|||..|++  +|+|++++++
T Consensus       363 ~~~~v~~~~~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~s  404 (505)
T PRK00302        363 YVQPPLLAKGLKLAPLICYEIIFPEEVRANVRQGADLLLNIS  404 (505)
T ss_pred             CCCCCcccCCceEEEEEeehhcChHHHHhhccCCCCEEEEcc
Confidence            438899999999999999999999999996  7899998643

>PRK12291 apolipoprotein N-acyltransferase; Reviewed

Probab=99.94  E-value=1.6e-26  Score=196.42  Aligned_cols=152  Identities=11%  Similarity=0.115  Sum_probs=124.7

Q ss_pred             cEEEEEeCCCCCC-------HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHH
Q 029167            9 VVVSALQFACTDD-------VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQE   81 (198)
Q Consensus         9 ~~ia~~Q~~~~~~-------~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~   81 (198)
                      .+|+++|+|+.++       .+++.++..+++++|.+.++|+|||||++++.+...              .+...+.+++
T Consensus       195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~~--------------~~~~~~~l~~  260 (418)
T PRK12291        195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALNN--------------SPILLDKLKE  260 (418)
T ss_pred             CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchhh--------------CHHHHHHHHH
Confidence            4999999999433       357888999999988888999999999998754311              1245566777


Q ss_pred             HHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCC----------------CccccccCCCCCeee
Q 029167           82 LAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY----------------QEKFYFNPGDTGFKV  145 (198)
Q Consensus        82 ~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~----------------~e~~~~~~G~~~~~~  145 (198)
                      .+  .++.+++|.+..+++++|||++++++ |+ +.+|+|+||+|++++                .+...|++|+. .++
T Consensus       261 ~~--~~~~ii~G~~~~~~~~~yNS~~vi~~-G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~~~~~f~~G~~-~~~  335 (418)
T PRK12291        261 LS--HKITIITGALRVEDGHIYNSTYIFSK-GN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFGGASDFSKASK-FSD  335 (418)
T ss_pred             hc--cCCcEEEeeeeccCCceEEEEEEECC-CC-cceecccCCCCCcccCccHHHHHhhhHHHhccCcccCCCCCC-Ccc
Confidence            64  57999999988777789999999974 87 789999999998763                34457999988 889


Q ss_pred             EEeCCceEEEeeeecccCCccccccCCCCcccc---ccc
Q 029167          146 GAWNNLNLNLICFFDLIFDDDFPSRLDFPLPFL---NRF  181 (198)
Q Consensus       146 ~~~~~~~ig~~IC~d~~~pe~~r~~~~~~~~~~---~~~  181 (198)
                      +++++.|+|++||||.+|||+.|  +|++++++   +.|
T Consensus       336 ~~~~g~~ig~lICYE~~Fpel~r--~ga~~Lv~iSNdaW  372 (418)
T PRK12291        336 FTLDGVKFRNAICYEATSEELYE--GNPKIVIAISNNAW  372 (418)
T ss_pred             eeeCCeEEEEEEeeeecchHhhc--cCCCEEEEeccccc
Confidence            99999999999999999999998  89999875   447

>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.94  E-value=6e-27  Score=186.47  Aligned_cols=172  Identities=23%  Similarity=0.272  Sum_probs=147.8

Q ss_pred             CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCC----CChHHHHHHH
Q 029167            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYK----DHPTILKMQE   81 (198)
Q Consensus         7 ~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~----~~~~~~~l~~   81 (198)
                      .++++|++|... ..+...|+..+++.+++|+++|+++|||||.++.||...+.   +...++...    .++....+++
T Consensus        12 ~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~~s---f~py~E~i~~~~~~~ps~~~ls~   88 (298)
T KOG0806|consen   12 PNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFTES---FYPYLEDIPDPGCRDPSRQGLSE   88 (298)
T ss_pred             cccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhcccccccccc---ccchhhhCCCcccCChhHHHhHH
Confidence            468999999999 56899999999999999999999999999999999988421   333333333    3689999999


Q ss_pred             HHHHhCCEEEEeeeeccC--CeeEEEEEEEcCCCCeeeeeeeccCCCCC-----CCCccccccCCCCCeeeEEeCCceEE
Q 029167           82 LAKELGVVMPVSFFEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPDGP-----GYQEKFYFNPGDTGFKVGAWNNLNLN  154 (198)
Q Consensus        82 ~a~~~~i~iv~g~~~~~~--~~~yNs~~~i~~~G~il~~y~K~~l~~~~-----~~~e~~~~~~G~~~~~~~~~~~~~ig  154 (198)
                      +|++++++++.|.++...  ++.||++.+++++|+.++.|+|.||++..     -|.|...|.+|.. +.++....+|||
T Consensus        89 va~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~-f~~~~~~~gkfG  167 (298)
T KOG0806|consen   89 VAERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQ-FTVVDTSYGKFG  167 (298)
T ss_pred             HHhhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcC-CCcccCCCCceE
Confidence            999999999999887654  89999999999999999999999998642     2567788999999 899999999999


Q ss_pred             EeeeecccCCcccccc--CCCCcccc-cccc
Q 029167          155 LICFFDLIFDDDFPSR--LDFPLPFL-NRFS  182 (198)
Q Consensus       155 ~~IC~d~~~pe~~r~~--~~~~~~~~-~~~~  182 (198)
                      +.||||++|+|+++.+  .|+++++. ..|-
T Consensus       168 i~IC~Di~F~d~A~~~~~~g~~~ivyPtaw~  198 (298)
T KOG0806|consen  168 IFICFDIRFYDPAMILVKDGADLIVYPTAWN  198 (298)
T ss_pred             EEEEecccccchHHHHHHcCCcEEEecchHh
Confidence            9999999999999996  88998874 4455

>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]

Probab=99.90  E-value=8e-23  Score=157.37  Aligned_cols=159  Identities=23%  Similarity=0.263  Sum_probs=135.1

Q ss_pred             CCCccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh------------hhHH---HHhcC
Q 029167            5 KRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ------------REDF---FQRAK   68 (198)
Q Consensus         5 ~~~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~------------~~~~---~~~a~   68 (198)
                      ++.+.||+++|... ..|....++++++.+.+|++.|++||||||.++.||+-+..            ++++   ...|-
T Consensus        14 ~~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AI   93 (337)
T KOG0805|consen   14 SSSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRKYHASAI   93 (337)
T ss_pred             cccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHHHHHHhh
Confidence            45679999999999 67888899999999999999999999999999999976531            3333   33444


Q ss_pred             CCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCcccccc--CCCCCeeeE
Q 029167           69 PYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFN--PGDTGFKVG  146 (198)
Q Consensus        69 ~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~--~G~~~~~~~  146 (198)
                      ..+ ++..++|.++|+++++++++|..++++..+|.++++|+|+|..++.+||..+..    .|+-.|-  .|+. .|+|
T Consensus        94 ev~-gpEv~~l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKlmPTa----lERciWGqGDGST-iPV~  167 (337)
T KOG0805|consen   94 EVP-GPEVERLAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKLMPTA----LERCIWGQGDGST-IPVY  167 (337)
T ss_pred             cCC-ChHHHHHHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCccccccccccccch----hhheeeccCCCcc-ccee
Confidence            444 689999999999999999999999999999999999999999999999998766    4554444  4555 8999


Q ss_pred             EeCCceEEEeeeecccCCccccc
Q 029167          147 AWNNLNLNLICFFDLIFDDDFPS  169 (198)
Q Consensus       147 ~~~~~~ig~~IC~d~~~pe~~r~  169 (198)
                      +++-++||.+||+|.+.|-+-..
T Consensus       168 dT~iGKIG~AICWEN~MPl~R~a  190 (337)
T KOG0805|consen  168 DTPIGKIGAAICWENRMPLYRTA  190 (337)
T ss_pred             ecccchhceeeecccccHHHHHH
Confidence            99999999999999999975433

>PRK13825 conjugal transfer protein TraB; Provisional

Probab=99.89  E-value=2.3e-22  Score=169.06  Aligned_cols=152  Identities=13%  Similarity=-0.011  Sum_probs=116.3

Q ss_pred             cEEEEEeCCCCCC-----HHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHH
Q 029167            9 VVVSALQFACTDD-----VSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA   83 (198)
Q Consensus         9 ~~ia~~Q~~~~~~-----~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a   83 (198)
                      -++..+++++.++     .-++..++.+.+++|.++|+|+|||||+++++|....              .   +.+++.+
T Consensus       186 ~~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~~~--------------~---~~~~~~l  248 (388)
T PRK13825        186 AGWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTPTT--------------E---RLWRESL  248 (388)
T ss_pred             CCeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcccccccccc--------------c---HHHHHHH
Confidence            4667777777311     1244556677788888889999999999998874211              1   1245556


Q ss_pred             HHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCC-------ccccccCCCCCeeeEEeCCceEEEe
Q 029167           84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ-------EKFYFNPGDTGFKVGAWNNLNLNLI  156 (198)
Q Consensus        84 ~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~-------e~~~~~~G~~~~~~~~~~~~~ig~~  156 (198)
                      +++++.+++|..+++++++||++++++++|. ...|+|+||+|++++.       |..++.+|....++|++++.|+|++
T Consensus       249 ~~~~i~II~G~~~~~~~~~yNsa~v~~~~G~-~~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~~~~~vf~l~g~rvg~l  327 (388)
T PRK13825        249 RGSDVTVIAGAAVVDPGGYDNVLVAISAGGG-RILYRERMPVPVSMWQPWRPWTGQGGGARAHFFANPVVEIDGRRAAPL  327 (388)
T ss_pred             HhCCCeEEEEeeecCCCCceEEEEEEeCCCC-eeeEeeeeCcCccccCchHHhhccccCCCCCCCCCCceeeCCeEEEEE
Confidence            8899999999988888889999999998886 4599999999877642       5566777743246899999999999


Q ss_pred             eeecccC--CccccccCCCCcccc
Q 029167          157 CFFDLIF--DDDFPSRLDFPLPFL  178 (198)
Q Consensus       157 IC~d~~~--pe~~r~~~~~~~~~~  178 (198)
                      ||||.+|  |++.+.++|+|++++
T Consensus       328 ICYE~~F~~pel~~~~~GadlLv~  351 (388)
T PRK13825        328 ICYEQLLVWPVLQSMLHSPDVIVA  351 (388)
T ss_pred             EeeeecCcHHHHHhhccCCCEEEE
Confidence            9999988  776555689999874

>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]

Probab=99.87  E-value=1.7e-21  Score=168.87  Aligned_cols=162  Identities=14%  Similarity=0.170  Sum_probs=119.5

Q ss_pred             CccEEEEEeCCCCC----CHHHHHHHHHHHHHH---HH--hCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHH
Q 029167            7 REVVVSALQFACTD----DVSTNLATAERLVRA---AH--GKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTIL   77 (198)
Q Consensus         7 ~~~~ia~~Q~~~~~----~~~~n~~~i~~~i~~---A~--~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~   77 (198)
                      ++++|+++|+++.+    +.++....+...+..   +.  .+++|+|||||.+++-....              ......
T Consensus       226 ~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~~~--------------~~~~~~  291 (518)
T COG0815         226 PTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDLTR--------------HPDALA  291 (518)
T ss_pred             CceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccchhh--------------cchHHH
Confidence            45999999999943    333333333333322   22  37899999999999732211              123367


Q ss_pred             HHHHHHHHhCCEEEEeeeec--cCC--eeEEEEEEEcCCCCeeeeeeeccCCCCCCCCc---------------cccccC
Q 029167           78 KMQELAKELGVVMPVSFFEE--ANN--AHYNSIAIIDADGSDLGLYRKSHIPDGPGYQE---------------KFYFNP  138 (198)
Q Consensus        78 ~l~~~a~~~~i~iv~g~~~~--~~~--~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e---------------~~~~~~  138 (198)
                      ++.+.+++.+..+++|+...  .++  .+|||+++++++|++..+|+|+||+|++||-.               ...|.+
T Consensus       292 ~~~~~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~l~~~~~~~~~~~~~f~~  371 (518)
T COG0815         292 RLAEALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPELLRPLYFFLNLPMSDFSR  371 (518)
T ss_pred             HHHHHHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHHHHHHhhhhccccccccC
Confidence            78888999999999994432  234  48999999999989999999999999998742               235677


Q ss_pred             CCCCeeeEEeCC-ceEEEeeeecccCCcccccc--CCCCccc---cccccc
Q 029167          139 GDTGFKVGAWNN-LNLNLICFFDLIFDDDFPSR--LDFPLPF---LNRFSK  183 (198)
Q Consensus       139 G~~~~~~~~~~~-~~ig~~IC~d~~~pe~~r~~--~~~~~~~---~~~~~~  183 (198)
                      |+. ..++.+++ .|+++.||||+.||+..|..  +|+++++   ++.|-.
T Consensus       372 G~~-~~v~~~~~~~~~~~~ICYE~~F~~~~r~~~~qga~~Lin~SNDAWf~  421 (518)
T COG0815         372 GPG-PQVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSNDAWFG  421 (518)
T ss_pred             CCC-CcceecCCCceeeceeeehhhchHHHHHhhcCCCcEEEEcccccccC
Confidence            888 66666664 67999999999999999995  7999986   466653

>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]

Probab=99.65  E-value=9.2e-17  Score=134.56  Aligned_cols=178  Identities=17%  Similarity=0.116  Sum_probs=136.1

Q ss_pred             CCCccEEEEEeCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHH
Q 029167            5 KRREVVVSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELA   83 (198)
Q Consensus         5 ~~~~~~ia~~Q~~~~-~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a   83 (198)
                      |+..++||.++.|-| .|.+.|..+|.+-+++|++.||.+-+=||+-++||.|.+   .+.+....+   ...+.+.++.
T Consensus         1 m~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~D---Hf~E~Dt~~---HswE~l~~l~   74 (706)
T KOG2303|consen    1 MGRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCED---HFLESDTLL---HSWEMLAELV   74 (706)
T ss_pred             CCceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHH---hhccchHHH---HHHHHHHHHH
Confidence            567899999999995 799999999999999999999999999999999999986   243332222   3334444444


Q ss_pred             ---HHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCe-----------------
Q 029167           84 ---KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF-----------------  143 (198)
Q Consensus        84 ---~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~-----------------  143 (198)
                         ...++.+.+|+|....+..||+.+++ -+|+|+.+..|..|.+.+.|.|.+||++.+...                 
T Consensus        75 ~~~~~~~il~diGmPv~hr~~ryNCrv~~-~n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y~lP~~i~~~~~Q  153 (706)
T KOG2303|consen   75 ESPVTQDILCDIGMPVMHRNVRYNCRVLF-LNRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEYQLPRMIQKHTGQ  153 (706)
T ss_pred             cCCCCCCeeEecCCchhhhhhhhccceee-cCCeEEEEcccceeccCCCchhhccccccccccccceeeccHHHHHHhCC
Confidence               33478888999999999999999999 689999999999999999999999999988630                 


Q ss_pred             -------eeEEeCCceEEEeeeecccCCccccc---cCCCCcccccccccccccce
Q 029167          144 -------KVGAWNNLNLNLICFFDLIFDDDFPS---RLDFPLPFLNRFSKLNLQKL  189 (198)
Q Consensus       144 -------~~~~~~~~~ig~~IC~d~~~pe~~r~---~~~~~~~~~~~~~~~~~~~~  189 (198)
                             .++++...-+|.-||.|+|-|.--.-   +.|.+++.+.+.+.--|.++
T Consensus       154 ~tVPfGdavl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~  209 (706)
T KOG2303|consen  154 ETVPFGDAVLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKL  209 (706)
T ss_pred             eeecccceeeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhh
Confidence                   23334445689999999998762221   25555555555554444333

>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases)

Probab=90.29  E-value=3.4  Score=33.71  Aligned_cols=70  Identities=17%  Similarity=0.094  Sum_probs=44.1

Q ss_pred             HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-cC-CeeEEEEEEE
Q 029167           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-AN-NAHYNSIAII  109 (198)
Q Consensus        32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~~-~~~yNs~~~i  109 (198)
                      ..+....+|+|+|+.|-.+.....                 ......++..|.+++++++.....- ++ ..++=.+.++
T Consensus       161 ~~r~la~~GAdill~ps~~~~~~~-----------------~~w~~~~~aRA~En~~~vv~aN~~G~~~~~~~~G~S~iv  223 (291)
T cd07565         161 IARECAYKGAELIIRIQGYMYPAK-----------------DQWIITNKANAWCNLMYTASVNLAGFDGVFSYFGESMIV  223 (291)
T ss_pred             HHHHHHHCCCeEEEECCcCCCCcc-----------------hHHHHHHHHHHHhcCcEEEEecccccCCCceeeeeeEEE
Confidence            344445679999999975432110                 1222346778899999998532221 22 3455678888


Q ss_pred             cCCCCeeee
Q 029167          110 DADGSDLGL  118 (198)
Q Consensus       110 ~~~G~il~~  118 (198)
                      +|+|+++..
T Consensus       224 dP~G~ila~  232 (291)
T cd07565         224 NFDGRTLGE  232 (291)
T ss_pred             CCCCCEEEe
Confidence            999998754

Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic

>cd07576 R-amidase_like Pseudomonas sp

Probab=88.68  E-value=4.9  Score=31.62  Aligned_cols=69  Identities=19%  Similarity=0.119  Sum_probs=42.0

Q ss_pred             HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-cCC-eeEEEEEEEc
Q 029167           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANN-AHYNSIAIID  110 (198)
Q Consensus        33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~~~-~~yNs~~~i~  110 (198)
                      .+....+|+|+|+.|-.+...+.                 ......++..|.+++++++.....- .++ .++=.+.+++
T Consensus       151 ~~~~~~~gadii~~p~~~~~~~~-----------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~i~~  213 (254)
T cd07576         151 VRALALAGADLVLVPTALMEPYG-----------------FVARTLVPARAFENQIFVAYANRCGAEDGLTYVGLSSIAG  213 (254)
T ss_pred             HHHHHHCCCCEEEECCccCCCcc-----------------hhhhhhhHHHHHhCCCEEEEEcccCCCCCceeeeeeEEEC
Confidence            34445679999999864432221                 1122345677889999988643321 222 3445578888


Q ss_pred             CCCCeeee
Q 029167          111 ADGSDLGL  118 (198)
Q Consensus       111 ~~G~il~~  118 (198)
                      |+|+++..
T Consensus       214 p~G~il~~  221 (254)
T cd07576         214 PDGTVLAR  221 (254)
T ss_pred             CCCCEeEe
Confidence            99997643

MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl

>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=86.41  E-value=7.3  Score=30.79  Aligned_cols=70  Identities=16%  Similarity=0.138  Sum_probs=40.7

Q ss_pred             HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEe-eeeccCCeeE-EEEEEE
Q 029167           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVS-FFEEANNAHY-NSIAII  109 (198)
Q Consensus        32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g-~~~~~~~~~y-Ns~~~i  109 (198)
                      ..+.+..+|+|+++.|=.+...    . .            .......+..|.+++++++.. ..-..++..| =...++
T Consensus       154 ~~r~~~~~gadll~~ps~~~~~----~-~------------~~~~~~~~~rA~En~~~vv~~n~~g~~~~~~~~G~S~ii  216 (258)
T cd07584         154 VARILTLKGAEVIFCPSAWREQ----D-A------------DIWDINLPARALENTVFVAAVNRVGNEGDLVLFGKSKIL  216 (258)
T ss_pred             HHHHHHHCCCcEEEECCccCCC----C-c------------hHHHHHHHHHHHhCCcEEEEECccccCCCceecceeEEE
Confidence            3455566899999999533211    0 0            111123456688999999852 2212223333 367788


Q ss_pred             cCCCCeeee
Q 029167          110 DADGSDLGL  118 (198)
Q Consensus       110 ~~~G~il~~  118 (198)
                      +|+|+++..
T Consensus       217 ~p~G~il~~  225 (258)
T cd07584         217 NPRGQVLAE  225 (258)
T ss_pred             CCCCceeee
Confidence            999997643

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=85.56  E-value=7.6  Score=30.74  Aligned_cols=73  Identities=19%  Similarity=0.092  Sum_probs=42.2

Q ss_pred             HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-ccCC-eeEEEEEEEc
Q 029167           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAIID  110 (198)
Q Consensus        33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~~~-~~yNs~~~i~  110 (198)
                      .+....+|+|+|+.|=.+........  .           ......++..|.+++++++..... ..++ .+.=...+++
T Consensus       149 ~r~l~~~gadlil~p~~~~~~~~~~~--~-----------~~~~~~~~~rA~e~~~~vv~~n~~g~~~~~~~~G~S~i~~  215 (261)
T cd07585         149 VRATALLGAEILFAPHATPGTTSPKG--R-----------EWWMRWLPARAYDNGVFVAACNGVGRDGGEVFPGGAMILD  215 (261)
T ss_pred             HHHHHHCCCCEEEECCccCCCCCcch--H-----------HHHHHHhHHHHhhcCeEEEEecccccCCCceecceEEEEC
Confidence            45556789999999964432111000  0           111234567788899999864222 1222 2334568888


Q ss_pred             CCCCeeee
Q 029167          111 ADGSDLGL  118 (198)
Q Consensus       111 ~~G~il~~  118 (198)
                      |+|+++..
T Consensus       216 p~G~v~~~  223 (261)
T cd07585         216 PYGRVLAE  223 (261)
T ss_pred             CCCCEEec
Confidence            99997654

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>PRK13286 amiE acylamide amidohydrolase; Provisional

Probab=85.27  E-value=9.6  Score=32.05  Aligned_cols=70  Identities=21%  Similarity=0.192  Sum_probs=44.5

Q ss_pred             HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-ccC-CeeEEEEEEE
Q 029167           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EAN-NAHYNSIAII  109 (198)
Q Consensus        32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~~-~~~yNs~~~i  109 (198)
                      ..+.++.+|+++|+-|-.+..+.  .               ......++..|.+++++++..... .++ -.++=.+.++
T Consensus       174 ~~R~la~~GAelii~psa~~~~~--~---------------~~~~~~~rarA~eN~~yVv~aN~~G~~~~~~~~G~S~Iv  236 (345)
T PRK13286        174 IWRDCAMKGAELIVRCQGYMYPA--K---------------EQQVLVAKAMAWANNCYVAVANAAGFDGVYSYFGHSAII  236 (345)
T ss_pred             HHHHHHHcCCeEEEEccccCCCc--h---------------HHHHHHHHHHHHHCCCEEEEEecccccCCceeeeeEEEE
Confidence            44455678999999885432210  0               122345677788999999874332 222 2445668899


Q ss_pred             cCCCCeeee
Q 029167          110 DADGSDLGL  118 (198)
Q Consensus       110 ~~~G~il~~  118 (198)
                      +|+|+++..
T Consensus       237 dp~G~vla~  245 (345)
T PRK13286        237 GFDGRTLGE  245 (345)
T ss_pred             CCCCcEEEe
Confidence            999998765

>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional

Probab=84.14  E-value=5  Score=32.00  Aligned_cols=58  Identities=14%  Similarity=-0.004  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167           20 DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV   92 (198)
Q Consensus        20 ~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~   92 (198)
                      .+.....+.+.+.++...++|..+++|||..-+....         .      .+.-.-.-.+|.+.+++|+-
T Consensus       119 ~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs~~g~---------l------~~Fk~Ga~~lA~~~~~PIvP  176 (245)
T PRK15018        119 NNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRG---------L------LPFKTGAFHAAIAAGVPIIP  176 (245)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEECCccCCCCCC---------C------CCccHHHHHHHHHcCCCEEE
Confidence            3455666677777777777789999999987653210         0      13334566778888888864

>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=82.67  E-value=8.1  Score=30.42  Aligned_cols=71  Identities=17%  Similarity=0.049  Sum_probs=41.8

Q ss_pred             HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-cc-CCeeEEEEEEE
Q 029167           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EA-NNAHYNSIAII  109 (198)
Q Consensus        32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~-~~~~yNs~~~i  109 (198)
                      ..+....+|+|+|+.|=.+... . .               .......+..|.+++++++..... .. +..++=.+.++
T Consensus       151 ~~r~~~~~ga~ll~~ps~~~~~-~-~---------------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii  213 (253)
T cd07583         151 LFRKLALEGAEILFVPAEWPAA-R-I---------------EHWRTLLRARAIENQAFVVACNRVGTDGGNEFGGHSMVI  213 (253)
T ss_pred             HHHHHHHcCCcEEEECCCCCCC-c-h---------------HHHHHHHHHHHHHhCCEEEEEcCcccCCCceecceeEEE
Confidence            4455567899999999543211 0 0               011123466788999998753221 12 23344556778


Q ss_pred             cCCCCeeeee
Q 029167          110 DADGSDLGLY  119 (198)
Q Consensus       110 ~~~G~il~~y  119 (198)
                      +|+|+++...
T Consensus       214 ~p~G~il~~~  223 (253)
T cd07583         214 DPWGEVLAEA  223 (253)
T ss_pred             CCCchhheec
Confidence            8999976543

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes

Probab=82.33  E-value=10  Score=29.58  Aligned_cols=69  Identities=26%  Similarity=0.213  Sum_probs=45.2

Q ss_pred             HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-c-cCCeeEEEEEEEc
Q 029167           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-E-ANNAHYNSIAIID  110 (198)
Q Consensus        33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~-~~~~~yNs~~~i~  110 (198)
                      .+.+..+|+|+|+.|-......                 ........+..|.+++++++..... . .+...+-...+++
T Consensus       152 ~~~~~~~g~dli~~ps~~~~~~-----------------~~~~~~~~~~~A~e~~~~vv~~n~~G~~~~~~~~G~S~i~~  214 (253)
T cd07197         152 ARELALKGADIILVPAAWPTAR-----------------REHWELLLRARAIENGVYVVAANRVGEEGGLEFAGGSMIVD  214 (253)
T ss_pred             HHHHHHCCCcEEEECCcCCCcc-----------------hHHHHHHHHHHHHHhCCeEEEecCCCCCCCccccceeEEEC
Confidence            3445577999999998754321                 0234456777899999999874332 1 2234556678888


Q ss_pred             CCCCeeee
Q 029167          111 ADGSDLGL  118 (198)
Q Consensus       111 ~~G~il~~  118 (198)
                      |+|+++..
T Consensus       215 p~G~~~~~  222 (253)
T cd07197         215 PDGEVLAE  222 (253)
T ss_pred             CCCceeee
Confidence            99987643

This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and

>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases)

Probab=82.16  E-value=15  Score=28.95  Aligned_cols=70  Identities=14%  Similarity=-0.028  Sum_probs=42.1

Q ss_pred             HHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-cCC-eeEEEEEEEcC
Q 029167           34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-ANN-AHYNSIAIIDA  111 (198)
Q Consensus        34 ~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~~~-~~yNs~~~i~~  111 (198)
                      +.....|+|+++.|=.+..  ....    .         ......++..|.+++++++.....- .++ .+.=.+.+++|
T Consensus       156 r~~~~~ga~ll~~ps~~~~--~~~~----~---------~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~G~S~ii~p  220 (261)
T cd07570         156 AELALAGADLILNLSASPF--HLGK----Q---------DYRRELVSSRSARTGLPYVYVNQVGGQDDLVFDGGSFIADN  220 (261)
T ss_pred             HHHHHcCCcEEEEeCCCcc--ccCc----H---------HHHHHHHHHHHHHhCCcEEEEeCCCCCceEEEECceEEEcC
Confidence            3345679999999965421  1110    0         1122457788999999998743322 222 23344788889


Q ss_pred             CCCeeee
Q 029167          112 DGSDLGL  118 (198)
Q Consensus       112 ~G~il~~  118 (198)
                      +|+++..
T Consensus       221 ~G~vl~~  227 (261)
T cd07570         221 DGELLAE  227 (261)
T ss_pred             CCCEEEe
Confidence            9998754

Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub

>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases)

Probab=81.95  E-value=9.4  Score=31.41  Aligned_cols=70  Identities=16%  Similarity=0.107  Sum_probs=43.6

Q ss_pred             HHHHHhC-CCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcC
Q 029167           33 VRAAHGK-GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA  111 (198)
Q Consensus        33 i~~A~~~-g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~  111 (198)
                      .+....+ |+|+++.|=.+......                ......++..|.+++++++.-..... ...+-.+.+++|
T Consensus       189 ~r~la~~~GAdlil~paaw~~~~~~----------------~~w~~l~~arA~eN~~~vi~~N~~g~-~~~~G~S~iv~P  251 (299)
T cd07567         189 ALELVKKLGVDDIVFPTAWFSELPF----------------LTAVQIQQAWAYANGVNLLAANYNNP-SAGMTGSGIYAG  251 (299)
T ss_pred             HHHHHHhCCCCEEEECCccCCCCCc----------------hhHHHHHHHHHHHcCceEEEecCCCC-cCccccceEEcC
Confidence            3444456 99999999554321110                01124467789999999987433221 223456788889


Q ss_pred             C-CCeeeee
Q 029167          112 D-GSDLGLY  119 (198)
Q Consensus       112 ~-G~il~~y  119 (198)
                      + |+++...
T Consensus       252 ~~G~v~a~~  260 (299)
T cd07567         252 RSGALVYHY  260 (299)
T ss_pred             CCCcEEEEe
Confidence            9 9988765

These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking

>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=80.94  E-value=14  Score=29.07  Aligned_cols=71  Identities=17%  Similarity=0.050  Sum_probs=41.8

Q ss_pred             HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeeccCCeeEEEEEEEcC
Q 029167           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDA  111 (198)
Q Consensus        32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~~~~~~yNs~~~i~~  111 (198)
                      ..+..+.+|+++|+.|=.+......               ........+..|.+++++++.....  +....=.+.+++|
T Consensus       155 ~~~~~~~~ga~lil~ps~~~~~~~~---------------~~~~~~~~~~rA~en~~~vv~~n~~--g~~~~G~S~i~~p  217 (255)
T cd07581         155 LARALALAGADVIVVPAAWVAGPGK---------------EEHWETLLRARALENTVYVAAAGQA--GPRGIGRSMVVDP  217 (255)
T ss_pred             HHHHHHHCCCcEEEECCcccCCCCc---------------hHHHHHHHHHHHHHhCCEEEEEcCc--CCCcccceEEECC
Confidence            3455566799999999643221100               0122345667788999998864322  1123334678889


Q ss_pred             CCCeeeee
Q 029167          112 DGSDLGLY  119 (198)
Q Consensus       112 ~G~il~~y  119 (198)
                      +|+++...
T Consensus       218 ~G~i~~~~  225 (255)
T cd07581         218 LGVVLADL  225 (255)
T ss_pred             Ccceeeec
Confidence            99876543

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)

Probab=80.36  E-value=24  Score=27.99  Aligned_cols=74  Identities=14%  Similarity=0.080  Sum_probs=42.0

Q ss_pred             HHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE-eeeeccCC-eeEEEEEEEcC
Q 029167           34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV-SFFEEANN-AHYNSIAIIDA  111 (198)
Q Consensus        34 ~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~-g~~~~~~~-~~yNs~~~i~~  111 (198)
                      +....+|+|+|+.|=.+........       ...    .......+..|.+++++++. +..-.+++ .++=...+++|
T Consensus       154 r~~~~~ga~li~~ps~~~~~~~~~~-------~~~----~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p  222 (268)
T cd07580         154 RLLALQGADIVCVPTNWVPMPRPPE-------GGP----PMANILAMAAAHSNGLFIACADRVGTERGQPFIGQSLIVGP  222 (268)
T ss_pred             HHHHHcCCCEEEEcCcccccCCccc-------ccC----cHHHHhhHHHHhhCCcEEEEEeeeeeccCceEeeeeEEECC
Confidence            4445679999999976543221000       000    01112345567889999976 33322233 34456789999


Q ss_pred             CCCeeee
Q 029167          112 DGSDLGL  118 (198)
Q Consensus       112 ~G~il~~  118 (198)
                      +|+++..
T Consensus       223 ~G~~~~~  229 (268)
T cd07580         223 DGWPLAG  229 (268)
T ss_pred             CCCeeee
Confidence            9997543

The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.

>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases)

Probab=80.31  E-value=8.3  Score=30.51  Aligned_cols=70  Identities=21%  Similarity=0.174  Sum_probs=40.9

Q ss_pred             HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-c-CCe-eEEEEEE
Q 029167           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A-NNA-HYNSIAI  108 (198)
Q Consensus        32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~-~~~-~yNs~~~  108 (198)
                      ..+.+..+|+|+|+.|-.+....  ..              .......+..|.+++++++.....- . ++. .+=.+.+
T Consensus       161 ~~r~~~~~gadli~~p~~~~~~~--~~--------------~~~~~~~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i  224 (265)
T cd07572         161 LARALARQGADILTVPAAFTMTT--GP--------------AHWELLLRARAIENQCYVVAAAQAGDHEAGRETYGHSMI  224 (265)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCc--ch--------------HHHHHHHHHHHHhcCCEEEEEcccccCCCCCeecceeEE
Confidence            44556678999999995332111  00              1112334666888999998753321 1 122 2335777


Q ss_pred             EcCCCCeee
Q 029167          109 IDADGSDLG  117 (198)
Q Consensus       109 i~~~G~il~  117 (198)
                      ++|+|+++.
T Consensus       225 ~~p~G~il~  233 (265)
T cd07572         225 VDPWGEVLA  233 (265)
T ss_pred             ECCCcHHHh
Confidence            889998653

This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
1j31_A	262	Crystal Structure Of Hypothetical Protein Ph0642 Fr		3e-14
3ivz_A	262	Crystal Structure Of Hyperthermophilic Nitrilase Le		9e-13
2vhh_A	405	Crystal Structure Of A Pyrimidine Degrading Enzyme		5e-10
1erz_A	303	Crystal Structure Of N-Carbamyl-D-Amino Acid Amidoh		2e-07
1uf4_A	303	Crystal Structure Of C171aV236A MUTANT OF N-Carbamy		2e-07
2ggl_A	304	The Mutant A222c Of Agrobacterium Radiobacter N-Car		4e-07
2ggk_A	304	The Mutant A302c Of Agrobacterium Radiobacter N-Car		4e-07
1fo6_A	304	Crystal Structure Analysis Of N-Carbamoyl-D-Amino-A		4e-07
2w1v_A	276	Crystal Structure Of Mouse Nitrilase-2 At 1.4a Reso		2e-06

>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From Pyrococcus Horikoshii Length = 262

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 73/126 (57%), Gaps = 8/126 (6%)
Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKM 79
           ++  N + AE+L++ A  +GA ++++ ELF+ GY F    RE+ F  A+   +  T   +
Sbjct: 15  ELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNF--ESREEVFDVAQQIPEGETTTFL 72
Query: 80  QELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPG 139
            ELA+ELG+ +     E++ N  YNS  ++   G  +G YRK H+     Y+EK +F PG
Sbjct: 73  XELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGY-IGKYRKIHL----FYREKVFFEPG 127
Query: 140 DTGFKV 145
           D GFKV
Sbjct: 128 DLGFKV 133

>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase Length = 262

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 71/122 (58%), Gaps = 8/122 (6%)
Query: 25  NLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAKPYKDHPTILKMQELA 83
           N + AE+L++ A  +GA ++++ ELF+ GY F    RE+ F+ A+   +  T   + ++A
Sbjct: 19  NYSKAEKLIKEASKQGAQLVVLPELFDTGYNF--ETREEVFEIAQKIPEGETTTFLMDVA 76
Query: 84  KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF 143
           ++ GV +     E+  +  YNS  ++   G  +G YRK H+     Y+EKF+F PGD GF
Sbjct: 77  RDTGVYIVAGTAEKDGDVLYNSAVVVGPRGF-IGKYRKIHL----FYREKFFFEPGDLGF 131
Query: 144 KV 145
           +V
Sbjct: 132 RV 133

>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From Drosophila Melanogaster Length = 405

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 5   KRREVVVSALQFACTDDVSTNLAT--------AERLVRAAHGKGANIILIQELFE-GYYF 55
           KRR V V A+Q +     +  +           + +++AA   G NI+  QE +   + F
Sbjct: 69  KRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAF 128
Query: 56  CQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE---EANNAHYNSIAIIDAD 112
           C  ++  + + A+  ++ PT   + ELAK   +V+  S  E   E     +N+  +I   
Sbjct: 129 CTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNS 188
Query: 113 GSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKV 145
           G  LG +RK+HIP    + E  Y+  G+TG  V
Sbjct: 189 GRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPV 221

>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid Amidohydrolase With A Novel Catalytic Framework Common To Amidohydrolases Length = 303

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 21/132 (15%)
Query: 32  LVRAAHGKGANIILIQEL-----FEGYYFC-QAQREDFFQRAKPYKDHPTILKMQELAKE 85
           ++  A  +GAN I+  EL     F  ++F  +A+ + F++   P    P +  + E A E
Sbjct: 30  MLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMP---GPVVRPLFEKAAE 86
Query: 86  LGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EK 133
           LG+   + +     E      +N+  ++D  G  +G YRK H+P    Y+        EK
Sbjct: 87  LGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK 146
Query: 134 FYFNPGDTGFKV 145
            YF PGD GF V
Sbjct: 147 RYFEPGDLGFPV 158

>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D- Amino Acid Amidohydrolase Length = 303

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 21/132 (15%)
Query: 32  LVRAAHGKGANIILIQEL-----FEGYYFC-QAQREDFFQRAKPYKDHPTILKMQELAKE 85
           ++  A  +GAN I+  EL     F  ++F  +A+ + F++   P    P +  + E A E
Sbjct: 30  MLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMP---GPVVRPLFEKAAE 86
Query: 86  LGVVMPVSF----FEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EK 133
           LG+   + +     E      +N+  ++D  G  +G YRK H+P    Y+        EK
Sbjct: 87  LGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK 146
Query: 134 FYFNPGDTGFKV 145
            YF PGD GF V
Sbjct: 147 RYFEPGDLGFPV 158

>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter N-Carbamoyl-D-Amino Acid Amidohydrolase Length = 304

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 36/163 (22%)
Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
           + + + RE VV  L      D+ TN A+          +G N I+  EL     F  ++F
Sbjct: 15  IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56  C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
             +A+ + F++   P    P +  + E A ELG+   + +     E      +N+  ++D
Sbjct: 60  TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKV 145
             G  +G YRK H+P    Y+        EK YF PGD GF V
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPV 159

>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter N-Carbamoyl-D- Amino-Acid Amidohydrolase Length = 304

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 36/163 (22%)
Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
           + + + RE VV  L      D+ TN A+          +G N I+  EL     F  ++F
Sbjct: 15  IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56  C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
             +A+ + F++   P    P +  + E A ELG+   + +     E      +N+  ++D
Sbjct: 60  TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKV 145
             G  +G YRK H+P    Y+        EK YF PGD GF V
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPV 159

>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid Amidohydrolase Length = 304

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 36/163 (22%)
Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQEL-----FEGYYF 55
           + + + RE VV  L      D+ TN A+          +G N I+  EL     F  ++F
Sbjct: 15  IARAETREQVVGRLL-----DMLTNAAS----------RGVNFIVFPELALTTFFPRWHF 59
Query: 56  C-QAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIID 110
             +A+ + F++   P    P +  + E A ELG+   + +     E      +N+  ++D
Sbjct: 60  TDEAELDSFYETEMP---GPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVD 116
Query: 111 ADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKV 145
             G  +G YRK H+P    Y+        EK YF PGD GF V
Sbjct: 117 KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPV 159

>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution Length = 276

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           ++ +Q   +   S NL  A  LVR A  +GANI+ + E F   Y        +F      
Sbjct: 6   LALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPY-----GTTYFPDYAEK 60
Query: 71  KDHPTILKMQELAKELGV-VMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHI--PDG 127
               +  K+ E+AKE  + ++  S  EE     YN+ ++   DGS L  +RK H+   D 
Sbjct: 61  IPGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDV 120
Query: 128 PG---YQEKFYFNPGDT 141
           PG   +QE    +PGD+
Sbjct: 121 PGKITFQESKTLSPGDS 137

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	4e-57
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	1e-54
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	1e-52
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	4e-42
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	6e-42
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	1e-29
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	2e-26
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	5e-21
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	8e-21
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	7e-19
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	6e-17
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	9e-09
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	2e-08
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	1e-07
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	8e-07

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Length = 405

 Score =  184 bits (468), Expect = 4e-57
 Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 12/153 (7%)

Query: 5   KRREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFE-GYYF 55
           KRR V V A+Q +                    + +++AA   G NI+  QE +   + F
Sbjct: 69  KRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAF 128

Query: 56  CQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE---ANNAHYNSIAIIDAD 112
           C  ++  + + A+  ++ PT   + ELAK   +V+  S  E         +N+  +I   
Sbjct: 129 CTREKFPWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNS 188

Query: 113 GSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKV 145
           G  LG +RK+HIP    + E  Y+  G+TG  V
Sbjct: 189 GRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPV 221

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A Length = 262

 Score =  173 bits (441), Expect = 1e-54
 Identities = 42/136 (30%), Positives = 75/136 (55%), Gaps = 7/136 (5%)

Query: 11  VSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKP 69
           V+ +Q      +   N + AE+L++ A  +GA ++++ ELF+  Y  +  RE+ F+ A+ 
Sbjct: 4   VAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFE-TREEVFEIAQK 62

Query: 70  YKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPG 129
             +  T   + ++A++ GV +     E+  +  YNS  ++   G  +G YRK H+     
Sbjct: 63  IPEGETTTFLMDVARDTGVYIVAGTAEKDGDVLYNSAVVVGPRGF-IGKYRKIHL----F 117

Query: 130 YQEKFYFNPGDTGFKV 145
           Y+EKF+F PGD GF+V
Sbjct: 118 YREKFFFEPGDLGFRV 133

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Length = 303

 Score =  169 bits (431), Expect = 1e-52
 Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 18/157 (11%)

Query: 7   REVVVSALQF---ACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ---AQR 60
           R+++++  Q    A  +     +     ++  A  +GAN I+  EL    +F +      
Sbjct: 2   RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDE 61

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEA----NNAHYNSIAIIDADGSDL 116
            +     +     P +  + E A ELG+   + + E          +N+  ++D  G  +
Sbjct: 62  AELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIV 121

Query: 117 GLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKV 145
           G YRK H+P    Y+        EK YF PGD GF V
Sbjct: 122 GKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPV 158

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A Length = 334

 Score =  143 bits (362), Expect = 4e-42
 Identities = 38/149 (25%), Positives = 54/149 (36%), Gaps = 18/149 (12%)

Query: 7   REVVVSALQFAC-----TDDVSTNLATAERLVRA--AHGKGANIILIQELFEGYYFCQAQ 59
              +V+A+QF         D+  N+ +  R + A  A   G  +I+  E           
Sbjct: 12  EGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKW 71

Query: 60  REDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE---EANNAHYNSIAIIDADGSDL 116
             + F    P           +  KE  V    S  E   ++N   YN+  IID  G  +
Sbjct: 72  LSEEFLLDVP---GKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEII 128

Query: 117 GLYRKSHIPDGPGYQEKFYFNPGDTGFKV 145
             YRK   P  P   E +Y  PGD G  V
Sbjct: 129 LKYRKLF-PWNP--IEPWY--PGDLGMPV 152

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP} Length = 283

 Score =  141 bits (358), Expect = 6e-42
 Identities = 32/162 (19%), Positives = 62/162 (38%), Gaps = 11/162 (6%)

Query: 5   KRREVVVSALQFACTD-DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDF 63
           +   + ++ +Q      D   NL   +     A  +GA ++L  ELF   Y         
Sbjct: 17  RGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVP----SQI 72

Query: 64  FQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAH-YNSIAIIDADGSDLGLYRKS 122
             +    +      +++ +A++ G+ +  S            +  + D  G  L  Y+K 
Sbjct: 73  CAQVSAEQVDAARSRLRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKV 132

Query: 123 HIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNL-ICFFDLIF 163
            +      +EK  F PG+    V +W    L+L +C +D+ F
Sbjct: 133 QLYG---PEEKAAFVPGEQPPPVLSWGGRQLSLLVC-YDVEF 170

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Length = 341

 Score =  110 bits (277), Expect = 1e-29
 Identities = 29/181 (16%), Positives = 55/181 (30%), Gaps = 24/181 (13%)

Query: 1   MEKG----KRREVVVSALQFAC-----TDDVSTNLATAERLVR--AAHGKGANIILIQEL 49
           M  G        V V+ + +         +V  N      ++        G ++++  E 
Sbjct: 1   MRHGDISSSNDTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEY 60

Query: 50  FEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVV-----MPVSFFEEANNAHYN 104
                       +  + A                ++  V            E    A YN
Sbjct: 61  SL--QGIMYDPAEMMETAVAI-PGEETEIFSRACRKANVWGVFSLTGERHEEHPRKAPYN 117

Query: 105 SIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFD 164
           ++ +ID +G  +  YRK   P  P   E +Y  PG   +       + ++LI   D  + 
Sbjct: 118 TLVLIDNNGEIVQKYRKII-PWCP--IEGWY--PGGQTYVSEGPKGMKISLIIXDDGNYP 172

Query: 165 D 165
           +
Sbjct: 173 E 173

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Length = 276

 Score =  100 bits (252), Expect = 2e-26
 Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 26/166 (15%)

Query: 11  VSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPY 70
           ++ +Q   +   S NL  A  LVR A  +GANI+ + E F            F   A+  
Sbjct: 6   LALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFN----SPYGTTYFPDYAEKI 61

Query: 71  KDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDLGLYRKSH-----I 124
               +  K+ E+AKE  + +   S  EE     YN+ ++   DGS L  +RK H     +
Sbjct: 62  -PGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDV 120

Query: 125 PDGPGYQEKFYFNPGDT-------GFKVGAWNNLNLNLICFFDLIF 163
           P    +QE    +PGD+         KVG         IC +D+ F
Sbjct: 121 PGKITFQESKTLSPGDSFSTFDTPYCKVGL-------GIC-YDMRF 158

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Length = 440

 Score = 88.6 bits (220), Expect = 5e-21
 Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 22/175 (12%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           M  G+     ++  Q    +D+  N   A+ ++  A  K   ++ + E F+         
Sbjct: 10  MATGRHF---IAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFD----FIGLN 62

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVV-----MPVSFFEEANNAHYNSIAIIDADGSD 115
           ++         D   + K +ELA++  +      +      +A +  +N+  IID+DG  
Sbjct: 63  KNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHP-WNTHLIIDSDGVT 121

Query: 116 LGLYRKSH-----IPDGPGYQEKFYFNPGDTGFKV--GAWNNLNLNLICFFDLIF 163
              Y K H     IP      E  +   G             L L  IC +D+ F
Sbjct: 122 RAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGL-SIC-YDVRF 174

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp} Length = 281

 Score = 86.2 bits (214), Expect = 8e-21
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 26/164 (15%)

Query: 11  VSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKP 69
           V   Q      D S N     +          +++++ E++   Y      E   ++A  
Sbjct: 23  VQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDL----EHLNEKADN 78

Query: 70  YKDHPTILKMQELAKELGVVMPV-SFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGP 128
                +   ++ LA++  V +   S     NN  +N+   ++  G  +  Y K H+    
Sbjct: 79  -NLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVP-- 135

Query: 129 GYQEKFYFNPGDT---------GFKVGAWNNLNLNLICFFDLIF 163
             +E  +   G+          G  V         LIC +DL F
Sbjct: 136 MLREHEFLTAGEYVAEPFQLSDGTYVTQ-------LIC-YDLRF 171

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Length = 291

 Score = 81.2 bits (201), Expect = 7e-19
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 16/144 (11%)

Query: 11  VSALQFACT-DDVSTNLATAERLVR--AAHGKGANIILIQELFEGYYFCQAQREDFFQRA 67
           V+ +Q + +  D   NL  A   +           ++++ E F   Y    Q   + +  
Sbjct: 13  VALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTD-QFRKYSEVI 71

Query: 68  KPYKDHPTILKMQELAKELGVV-----MPVSFFEEANNAHYNSIAIIDADGSDLGLYRKS 122
            P +   ++  +  LA +  ++     +P    +   +  YN+  I + DG  +  +RK 
Sbjct: 72  NPKEPSTSVQFLSNLANKFKIILVGGTIPEL--DPKTDKIYNTSIIFNEDGKLIDKHRKV 129

Query: 123 H-----IPDGPGYQEKFYFNPGDT 141
           H     IP+G  + E    +PG+ 
Sbjct: 130 HLFDVDIPNGISFHESETLSPGEK 153

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV} Length = 266

 Score = 75.8 bits (187), Expect = 6e-17
 Identities = 31/162 (19%), Positives = 60/162 (37%), Gaps = 28/162 (17%)

Query: 11  VSALQFACT-DDVSTNLATAERLVRAAHGKGANIILIQELFE-GYYFCQAQREDFFQRAK 68
           +S +Q +    D + N      L+    G  ++++++ E F  G+        +   +A+
Sbjct: 6   ISLVQGSTRWHDPAGNRDYYGALLEPLAG-QSDLVILPETFTSGF------SNEAIDKAE 58

Query: 69  PYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGP 128
              D PT+  ++  A  LG  +  S      +  +N +     DG  L  Y K H+    
Sbjct: 59  D-MDGPTVAWIRTQAARLGAAITGSVQLRTEHGVFNRLLWATPDG-ALQYYDKRHLFR-- 114

Query: 129 GYQEKFYFNPGDT-------GFKVGAWNNLNLNLICFFDLIF 163
              E   +  G         G+++          +C +DL F
Sbjct: 115 FGNEHLRYAAGRERLCVEWKGWRINP-------QVC-YDLRF 148

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Length = 634

 Score = 53.4 bits (129), Expect = 9e-09
 Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 22/151 (14%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ--AQREDFFQRAKPYKDHPTILK 78
           D   N+      +  A      I+ + EL    Y C+     +   + A  Y        
Sbjct: 19  DWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEY-------- 70

Query: 79  MQELAKELG-----VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEK 133
             E+A         + +P+          YN + +++ +G   G   K  + +   + E 
Sbjct: 71  CFEIAASCTDITVSLGLPMRI----AGITYNCVCLVE-NGIVKGFSAKQFLANEGVHYET 125

Query: 134 FYFNPGDTGFKVGAWNNLNLNLICFFDLIFD 164
            +F               N     F D++++
Sbjct: 126 RWFTAWPRN--HTTTFLYNDVKYPFGDVLYN 154

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 41/162 (25%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ--AQREDFFQRAKPYKDHPTILK 78
           D++ N     R  R +  +GA+++   E+    Y  +  A R  F + ++          
Sbjct: 18  DIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTA-------- 69

Query: 79  MQELAKEL------------GVVMPVSFFEEANNAH----YNSIAIIDADGSDLGLYRKS 122
           ++ELA  L            G +      +           N+ A++   G     + K 
Sbjct: 70  LRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKH 128

Query: 123 HIPDGPGYQEKFYFNPGDT-------GFKVGAWNNLNLNLIC 157
           H+P+   + E  YF PGDT       G  +          IC
Sbjct: 129 HLPNYGVFDEFRYFVPGDTMPIVRLHGVDIAL-------AIC 163

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A* Length = 680

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 8/122 (6%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ--AQREDFFQRAKPYKDHPTILK 78
           D + N A+   + RA H  GA + +  EL    Y  +    ++      +       +L 
Sbjct: 26  DPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAVE-----DALLD 80

Query: 79  MQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNP 138
           +   + +L  V+ V       +  YN+  +I   G+ LG+  KS++P    + E+    P
Sbjct: 81  LVTESADLLPVLVVGAPLRHRHRIYNTAVVI-HRGAVLGVVPKSYLPTYREFYERRQMAP 139

Query: 139 GD 140
           GD
Sbjct: 140 GD 141

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis} Length = 565

 Score = 47.5 bits (113), Expect = 8e-07
 Identities = 34/160 (21%), Positives = 50/160 (31%), Gaps = 18/160 (11%)

Query: 21  DVSTNLATAERLVRAAHGKGANIILIQELF-EGYY---------FCQAQRE--DFFQRAK 68
           D + N+A      +AAH  GA+ ++  EL   GY          F  A            
Sbjct: 20  DFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPEDLLLRPAFYAASDAALAELAAQL 79

Query: 69  PYKDHPTIL--KMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPD 126
                  +L           G               YN+ ++I   G   G YRK  +P+
Sbjct: 80  KPFAGLAVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASLIV-GGEVAGTYRKQDLPN 138

Query: 127 GPGYQEKFYFNPGDTGFKVGAWNNLNLNL-ICFFDLIFDD 165
              + EK YF        V   N +   + IC  D+    
Sbjct: 139 TEVFDEKRYFATDA-APYVFELNGVKFGVVIC-EDVWHAS 176

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	100.0
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	100.0
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	100.0
2w1v_A	276	Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A	100.0
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	100.0
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	100.0
2vhh_A	405	CG3027-PA; hydrolase; 2.8A {Drosophila melanogaste	100.0
1uf5_A	303	N-carbamyl-D-amino acid amidohydrolase; HET: CDT;	100.0
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	100.0
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	100.0
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	100.0
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	100.0
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	100.0
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	100.0
1ems_A	440	Nitfhit, NIT-fragIle histidine triad fusion protei	100.0
3hkx_A	283	Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alp	90.34
3obe_A	305	Sugar phosphate isomerase/epimerase; structural ge	87.39
3p8k_A	281	Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A	86.69
2uxy_A	341	Aliphatic amidase; nitrilase superfamily, hydrolas	84.52
3ivz_A	262	Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {	83.32
4fva_A	256	5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy	83.31
2dyu_A	334	Formamidase; AMIF, CEK, catalytic triad, helicobac	83.02
1f89_A	291	32.5 kDa protein YLR351C; nitrilase, dimer, struct	80.4
2e11_A	266	Hydrolase; dimethylarsenic inhibi complex, cacodyl	80.13
3cqj_A	295	L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre	80.01

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A

Probab=100.00  E-value=1.2e-37  Score=249.18  Aligned_cols=166  Identities=28%  Similarity=0.474  Sum_probs=149.3

Q ss_pred             cEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhC
Q 029167            9 VVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG   87 (198)
Q Consensus         9 ~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~   87 (198)
                      ||||++|+++ ..|++.|++++.+++++|+++|+|||||||++++||...+ .+++.+.++....++.++.++++|++++
T Consensus         2 ~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~~~-~~~~~~~a~~~~~~~~~~~l~~~a~~~~   80 (262)
T 3ivz_A            2 VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFET-REEVFEIAQKIPEGETTTFLMDVARDTG   80 (262)
T ss_dssp             CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSC-HHHHHHHCBCTTTSHHHHHHHHHHHHHC
T ss_pred             eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCCCC-HHHHHHhcCccCCCHHHHHHHHHHHHcC
Confidence            8999999999 5999999999999999999999999999999999998654 3355666664334789999999999999


Q ss_pred             CEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCccc
Q 029167           88 VVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDF  167 (198)
Q Consensus        88 i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~~  167 (198)
                      +++++|++++.++++||++++|+++| +++.|+|.||+    +.|..+|++|+..+++|+++++|+|++||||.+|||++
T Consensus        81 ~~iv~G~~~~~~~~~yNs~~~i~~~G-~~~~y~K~hL~----~~E~~~f~~G~~~~~v~~~~~~~ig~~IC~D~~fpe~~  155 (262)
T 3ivz_A           81 VYIVAGTAEKDGDVLYNSAVVVGPRG-FIGKYRKIHLF----YREKFFFEPGDLGFRVFDLGFMKVGVMICFDWFFPESA  155 (262)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEETTE-EEEEEECSSCC----GGGGGTCBCCCSCSCEEECSSCEEEECCGGGGGSHHHH
T ss_pred             cEEEEeEEEeeCCcEEEEEEEEcCCe-eEEEEeecccC----CchhceEeCCCCCceEEEECCEEEEEEEecCCCchHHH
Confidence            99999999999999999999999999 99999999995    37899999999338999999999999999999999999


Q ss_pred             ccc--CCCCcccccc
Q 029167          168 PSR--LDFPLPFLNR  180 (198)
Q Consensus       168 r~~--~~~~~~~~~~  180 (198)
                      |.+  .|++++++++
T Consensus       156 r~~~~~ga~li~~ps  170 (262)
T 3ivz_A          156 RTLALKGADVIAHPA  170 (262)
T ss_dssp             HHHHHTTCSEEEEEE
T ss_pred             HHHHHCCCCEEEEcC
Confidence            986  8999998754

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.4e-37  Score=251.23  Aligned_cols=171  Identities=14%  Similarity=0.204  Sum_probs=151.5

Q ss_pred             CCCCccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHH
Q 029167            4 GKRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQEL   82 (198)
Q Consensus         4 ~~~~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~   82 (198)
                      +++++||||++|+++ ..|++.|++++.+++++|+++|+|||||||++++||...+    +.+.++..+ ++.++.|+++
T Consensus        16 ~~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~~----~~~~a~~~~-~~~~~~l~~l   90 (281)
T 3p8k_A           16 PRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEH----LNEKADNNL-GQSFSFIKHL   90 (281)
T ss_dssp             CTTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTCGGG----HHHHSEETT-HHHHHHHHHH
T ss_pred             ccCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCChhH----HHHhhhccC-cHHHHHHHHH
Confidence            355779999999999 6999999999999999999999999999999999998653    455555443 6889999999


Q ss_pred             HHHhCCEEEEeee-eccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCe-eeEEe-CCceEEEeeee
Q 029167           83 AKELGVVMPVSFF-EEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF-KVGAW-NNLNLNLICFF  159 (198)
Q Consensus        83 a~~~~i~iv~g~~-~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~-~~~~~-~~~~ig~~IC~  159 (198)
                      |+++++++++|++ ++.++++||++++|+++|++++.|+|.||+++  |.|..+|++|+. . ++|++ +++|+|++|||
T Consensus        91 a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~--f~E~~~f~~G~~-~~~v~~~~~~~~ig~~IC~  167 (281)
T 3p8k_A           91 AEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPM--LREHEFLTAGEY-VAEPFQLSDGTYVTQLICY  167 (281)
T ss_dssp             HHHHTCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEECSCCCTT--TTGGGTCCCCSS-CCCCEECTTCCEEEEEEGG
T ss_pred             HhhCCeEEEEeeeEEccCCcEEEEEEEEcCCCeEEEEEeeEECCCC--cCccccCcCCCC-CceeEEeCCCcEEEEEEec
Confidence            9999999999975 56788999999999999999999999999873  468999999998 6 99999 99999999999


Q ss_pred             cccCCcccccc--CCCCcccccc-cc
Q 029167          160 DLIFDDDFPSR--LDFPLPFLNR-FS  182 (198)
Q Consensus       160 d~~~pe~~r~~--~~~~~~~~~~-~~  182 (198)
                      |++|||++|.+  .|++++++++ |.
T Consensus       168 D~~fpe~~r~~~~~Gadli~~psa~~  193 (281)
T 3p8k_A          168 DLRFPELLRYPARSGAKIAFYVAQWP  193 (281)
T ss_dssp             GGGCTHHHHHHHHTTCCEEEEEECCB
T ss_pred             CCCCcHHHHHHHHCCCCEEEECCCCC
Confidence            99999999986  8999998654 54

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1

Probab=100.00  E-value=3.9e-37  Score=249.59  Aligned_cols=177  Identities=17%  Similarity=0.219  Sum_probs=149.2

Q ss_pred             CCCC--CCCccEEEEEeCCC-CCCHHHHHHHHHHHHHHH--HhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCC-CC--
Q 029167            1 MEKG--KRREVVVSALQFAC-TDDVSTNLATAERLVRAA--HGKGANIILIQELFEGYYFCQAQREDFFQRAKPY-KD--   72 (198)
Q Consensus         1 ~~~~--~~~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A--~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~-~~--   72 (198)
                      |+++  |+++||||++|+++ ..+++.|++++.+++++|  .++|+|||||||++++||...    ++...++.. ..  
T Consensus         1 ~~~~~~m~~~~~va~vQ~~~~~~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~~~~----~~~~~~~~~~~~~~   76 (291)
T 1f89_A            1 MSASKILSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTD----QFRKYSEVINPKEP   76 (291)
T ss_dssp             -CCSSSBSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHH----HHHHHTTBCCSSSC
T ss_pred             CCccccccccceEEEEeccCCcCCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCCChH----HHHHHhhhhccCCC
Confidence            4444  66679999999995 889999999999999999  889999999999999998643    344555543 22  


Q ss_pred             ChHHHHHHHHHHHhCCEEEEee-eeccC--CeeEEEEEEEcCCCCeeeeeeeccCCC-----CCCCCccccccCCCCCee
Q 029167           73 HPTILKMQELAKELGVVMPVSF-FEEAN--NAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFK  144 (198)
Q Consensus        73 ~~~~~~l~~~a~~~~i~iv~g~-~~~~~--~~~yNs~~~i~~~G~il~~y~K~~l~~-----~~~~~e~~~~~~G~~~~~  144 (198)
                      ++..+.|+++|++++++|++|. +++.+  +++||++++|+++|++++.|+|.||++     ...+.|..+|++|+. .+
T Consensus        77 ~~~~~~l~~~a~~~~~~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hLf~e~~P~~~~~~E~~~f~~G~~-~~  155 (291)
T 1f89_A           77 STSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEK-ST  155 (291)
T ss_dssp             CHHHHHHHHHHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCC-CE
T ss_pred             ChHHHHHHHHHHHcCcEEEeceeecccCCCCceEEEEEEECCCCcEEeEEeeeccCCCccCccccccccccccCCCC-Cc
Confidence            5789999999999999999994 66665  789999999999999999999999953     113468889999998 89


Q ss_pred             eEEeCCceEEEeeeecccCCcccccc--CCCCcccccccc
Q 029167          145 VGAWNNLNLNLICFFDLIFDDDFPSR--LDFPLPFLNRFS  182 (198)
Q Consensus       145 ~~~~~~~~ig~~IC~d~~~pe~~r~~--~~~~~~~~~~~~  182 (198)
                      +|+++++|+|++||||++|||++|.+  .|++++++++|.
T Consensus       156 v~~~~~~~ig~~ICyD~~fpe~~r~l~~~Ga~ll~~ps~~  195 (291)
T 1f89_A          156 TIDTKYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSAF  195 (291)
T ss_dssp             EEEETTEEEEECCGGGGGCHHHHHHHHHTTEEEEEEECCC
T ss_pred             eEecCCeeEEEEEecccCchHHHHHHHhhCCCEEEECCcC
Confidence            99999999999999999999999985  899999987764

>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}

Probab=100.00  E-value=3.7e-37  Score=248.03  Aligned_cols=170  Identities=26%  Similarity=0.271  Sum_probs=148.9

Q ss_pred             CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh
Q 029167            7 REVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL   86 (198)
Q Consensus         7 ~~~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~   86 (198)
                      ++||||++|+++..+.+.|++++.+++++|.++|+|||||||++++||...+    +...++... ++.++.|+++|+++
T Consensus         2 ~~~~va~vQ~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~----~~~~~~~~~-~~~~~~l~~~a~~~   76 (276)
T 2w1v_A            2 STFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTY----FPDYAEKIP-GESTQKLSEVAKES   76 (276)
T ss_dssp             CEEEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCSTTT----HHHHCBCSS-SHHHHHHHHHHHHH
T ss_pred             CccEEEEEeccccCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCHHH----HHHHhccCC-CHHHHHHHHHHHHc
Confidence            5699999999998999999999999999999999999999999999997643    344454443 68999999999999


Q ss_pred             CCEEEEe-eeeccCCeeEEEEEEEcCCCCeeeeeeeccCC----CCCC-CCccccccCCCCCeeeEEeCCceEEEeeeec
Q 029167           87 GVVMPVS-FFEEANNAHYNSIAIIDADGSDLGLYRKSHIP----DGPG-YQEKFYFNPGDTGFKVGAWNNLNLNLICFFD  160 (198)
Q Consensus        87 ~i~iv~g-~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~----~~~~-~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d  160 (198)
                      ++++++| .+++.++++||++++|+++|++++.|+|+||+    |+++ +.|..+|++|+. +++|+++++|+|++||||
T Consensus        77 ~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~vP~~e~~~E~~~f~~G~~-~~v~~~~~~~ig~~ICyD  155 (276)
T 2w1v_A           77 SIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLSPGDS-FSTFDTPYCKVGLGICYD  155 (276)
T ss_dssp             TSEEECCCEEEEETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCCCCCC-CCEEECSSCEEEECCGGG
T ss_pred             CeEEEecceeecCCCcEEEEEEEECCCCcEEEEEecccccCcccCccccccccccccCCCC-ceeEEeCCceEEEEEEec
Confidence            9999998 45656789999999999999999999999993    4332 357889999998 899999999999999999


Q ss_pred             ccCCcccccc--CCCCcccccccc
Q 029167          161 LIFDDDFPSR--LDFPLPFLNRFS  182 (198)
Q Consensus       161 ~~~pe~~r~~--~~~~~~~~~~~~  182 (198)
                      ++|||++|.+  .|++++++++|.
T Consensus       156 ~~fpe~~r~~~~~ga~ll~~ps~~  179 (276)
T 2w1v_A          156 MRFAELAQIYAQRGCQLLVYPGAF  179 (276)
T ss_dssp             GGCHHHHHHHHHTTEEEEEEECCC
T ss_pred             cccHHHHHHHHHcCCCEEEECCcC
Confidence            9999999886  899999987764

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}

Probab=100.00  E-value=2.4e-36  Score=242.05  Aligned_cols=165  Identities=19%  Similarity=0.286  Sum_probs=145.2

Q ss_pred             CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHH
Q 029167            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE   85 (198)
Q Consensus         7 ~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~   85 (198)
                      .+||||++|+++ ..+++.|++++.+++++| ++|+|||||||++++||....     ...++... ++..+.++++|++
T Consensus         2 ~~~kva~~Q~~~~~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy~~~~-----~~~a~~~~-~~~~~~l~~~a~~   74 (266)
T 2e11_A            2 HDLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFSNEA-----IDKAEDMD-GPTVAWIRTQAAR   74 (266)
T ss_dssp             CCEEEEEEECCCCTTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCSCSGG-----GGGCEETT-SHHHHHHHHHHHH
T ss_pred             CccEEEEEeCCCCcCCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccCChhH-----HHhhccCC-CHHHHHHHHHHHH
Confidence            459999999999 689999999999999999 889999999999999996432     22333332 6889999999999


Q ss_pred             hCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCc
Q 029167           86 LGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDD  165 (198)
Q Consensus        86 ~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe  165 (198)
                      +++++++|++++.++++||++++|+++|+++ .|+|.||+++  +.|..+|++|+. .++|+++++|+|++||||++|||
T Consensus        75 ~~~~iv~G~~~~~~~~~yNs~~~i~~~G~i~-~y~K~hL~~~--~~E~~~f~~G~~-~~v~~~~~~~ig~~ICyD~~fpe  150 (266)
T 2e11_A           75 LGAAITGSVQLRTEHGVFNRLLWATPDGALQ-YYDKRHLFRF--GNEHLRYAAGRE-RLCVEWKGWRINPQVCYDLRFPV  150 (266)
T ss_dssp             HTSEEEEEEEEEETTEEEEEEEEECTTSCEE-EEECSSCCGG--GTTTTTSBCCCS-CCCEEETTEEEEEEEGGGGGCTT
T ss_pred             hCCEEEEeeeEccCCcEEEEEEEECCCCCEE-EEeeeccCCC--cChhhhccCCCC-ceEEEECCEEEEEEEEeccCCHH
Confidence            9999999999988899999999999999999 9999999985  357889999998 89999999999999999999999


Q ss_pred             cccccC--------CCCcccccc-cc
Q 029167          166 DFPSRL--------DFPLPFLNR-FS  182 (198)
Q Consensus       166 ~~r~~~--------~~~~~~~~~-~~  182 (198)
                      ++|.+.        |++++++++ |.
T Consensus       151 ~~r~~~~~~~~~~~ga~~i~~~s~w~  176 (266)
T 2e11_A          151 FCRNRFDVERPGQLDFDLQLFVANWP  176 (266)
T ss_dssp             TTCCCBSSSSTTSBSCSEEEEEECCC
T ss_pred             HHHHHHhhhhccCCCCcEEEEeCCCC
Confidence            999852        999998655 54

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}

Probab=100.00  E-value=2.8e-37  Score=249.71  Aligned_cols=169  Identities=20%  Similarity=0.272  Sum_probs=147.5

Q ss_pred             CCCCccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHH-HhcCCCCCChHHHHHHH
Q 029167            4 GKRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFF-QRAKPYKDHPTILKMQE   81 (198)
Q Consensus         4 ~~~~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~-~~a~~~~~~~~~~~l~~   81 (198)
                      .++++||||++|+++ ..|++.|++++.+++++|.++|+|||||||++++||.+.+    +. +.++... ++.++.+++
T Consensus        16 ~~~~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~d----~~~~~a~~~~-~~~~~~l~~   90 (283)
T 3hkx_A           16 IRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYVPSQ----ICAQVSAEQV-DAARSRLRG   90 (283)
T ss_dssp             CTTEEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCSCHHH----HHHHCCHHHH-HHHHHHHHH
T ss_pred             ecCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHH----HHHHhccccC-CHHHHHHHH
Confidence            355679999999999 5799999999999999999999999999999999998653    22 2232211 578899999


Q ss_pred             HHHHhCCEEEEeeeeccC-CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeec
Q 029167           82 LAKELGVVMPVSFFEEAN-NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFD  160 (198)
Q Consensus        82 ~a~~~~i~iv~g~~~~~~-~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d  160 (198)
                      +|+++++++++|++++.+ +++||++++|+++|++++.|+|.||++.   .|..+|++|+...++|+++++|+|++||||
T Consensus        91 ~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~---~E~~~f~~G~~~~~v~~~~~~~ig~~IC~D  167 (283)
T 3hkx_A           91 IARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGP---EEKAAFVPGEQPPPVLSWGGRQLSLLVCYD  167 (283)
T ss_dssp             HHHHTTSEEEECCBCSSCTTTCCBEEEEECTTSCEEEEEECSSCCHH---HHHHHSCCCCSCCCEEEETTEEEEECCGGG
T ss_pred             HHHHhCCEEEEEEEEEcCCCCEEEEEEEEcCCCcEEEEEccccCCCc---CchhhccCCCCCceEEEECCEEEEEEEecC
Confidence            999999999999998875 8999999999999999999999999752   478899999985579999999999999999


Q ss_pred             ccCCcccccc--CCCCcccccc
Q 029167          161 LIFDDDFPSR--LDFPLPFLNR  180 (198)
Q Consensus       161 ~~~pe~~r~~--~~~~~~~~~~  180 (198)
                      ++|||++|.+  .|++++++++
T Consensus       168 ~~fpe~~r~l~~~Ga~li~~ps  189 (283)
T 3hkx_A          168 VEFPEMVRAAAARGAQLVLVPT  189 (283)
T ss_dssp             GGSHHHHHHHHHTTCSEEEEEC
T ss_pred             cCCHHHHHHHHHCCCCEEEECC
Confidence            9999999986  8999998654

>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A

Probab=100.00  E-value=9.1e-36  Score=251.57  Aligned_cols=176  Identities=24%  Similarity=0.295  Sum_probs=139.7

Q ss_pred             CCCccEEEEEeCCCC--------CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcch-hhhHHHHhcCCCCCChH
Q 029167            5 KRREVVVSALQFACT--------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQA-QREDFFQRAKPYKDHPT   75 (198)
Q Consensus         5 ~~~~~~ia~~Q~~~~--------~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~-~~~~~~~~a~~~~~~~~   75 (198)
                      ++++||||++|+++.        .+.+.|++++.+++++|.++|+|||||||++++||.... ....+.+.++....++.
T Consensus        69 ~~~~~rVAlvQ~~i~~~~~~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~~~~~~~~~~~~ae~~~~~~~  148 (405)
T 2vhh_A           69 KRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGPT  148 (405)
T ss_dssp             CCCEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSHH
T ss_pred             CCCCCEEEEEeccccccccccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCcccccccccccchhhHHHHHhhccCCHH
Confidence            345699999999972        357899999999999999999999999999999985321 11123344554434788


Q ss_pred             HHHHHHHHHHhCCEEEEeeeecc---CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCce
Q 029167           76 ILKMQELAKELGVVMPVSFFEEA---NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLN  152 (198)
Q Consensus        76 ~~~l~~~a~~~~i~iv~g~~~~~---~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~  152 (198)
                      ++.|+++|++++++|++|++++.   ++++||++++|+++|++++.|+|.||++++.|.|..+|++|+...++|+++++|
T Consensus       149 ~~~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hL~~~g~f~E~~~f~~G~~~~~vf~~~~~r  228 (405)
T 2vhh_A          149 TKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETEFGK  228 (405)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEEETTTTTEEEEEEEEECTTSCEEEEEECSCCCC----------CCCCSCCCEEEETTEE
T ss_pred             HHHHHHHHHHCCEEEEEeceecccCCCCcEEEEEEEECCCCeEEEEEecccCCCCCCcCcccceeCCCCCCeeEEECCEE
Confidence            99999999999999999999875   578999999999999999999999999988888999999998547899999999


Q ss_pred             EEEeeeecccCCcccccc--CCCCcccccc
Q 029167          153 LNLICFFDLIFDDDFPSR--LDFPLPFLNR  180 (198)
Q Consensus       153 ig~~IC~d~~~pe~~r~~--~~~~~~~~~~  180 (198)
                      +|++||||++|||++|.+  +||+++++++
T Consensus       229 iG~~ICyD~~fPe~~r~la~~GAdill~ps  258 (405)
T 2vhh_A          229 LAVNICYGRHHPQNWMMFGLNGAEIVFNPS  258 (405)
T ss_dssp             EEECCGGGGGCHHHHHHHHHTTCSEEEEEE
T ss_pred             EEEEEeccccChHHHHHHHHcCCCEEEEcc
Confidence            999999999999999875  8999998754

>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A

Probab=100.00  E-value=2.7e-35  Score=239.81  Aligned_cols=175  Identities=21%  Similarity=0.316  Sum_probs=144.8

Q ss_pred             CccEEEEEeCCC-C--CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh---hhHHHHhcCCCCCChHHHHHH
Q 029167            7 REVVVSALQFAC-T--DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ---REDFFQRAKPYKDHPTILKMQ   80 (198)
Q Consensus         7 ~~~~ia~~Q~~~-~--~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~---~~~~~~~a~~~~~~~~~~~l~   80 (198)
                      ++||||++|+++ .  .+.+.|++++.+++++|.++|+|||||||++++||.+...   +.++....+....++.++.|+
T Consensus         2 ~~~~va~~Q~~~~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   81 (303)
T 1uf5_A            2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLF   81 (303)
T ss_dssp             CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHH
T ss_pred             ccEEEEEEEecCcccccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHH
Confidence            469999999998 4  7999999999999999999999999999999999865421   111111111101267889999


Q ss_pred             HHHHHhCCEEEEeeeecc-CC---eeEEEEEEEcCCCCeeeeeeeccCCCCCC------C--CccccccCCC-CCeeeEE
Q 029167           81 ELAKELGVVMPVSFFEEA-NN---AHYNSIAIIDADGSDLGLYRKSHIPDGPG------Y--QEKFYFNPGD-TGFKVGA  147 (198)
Q Consensus        81 ~~a~~~~i~iv~g~~~~~-~~---~~yNs~~~i~~~G~il~~y~K~~l~~~~~------~--~e~~~~~~G~-~~~~~~~  147 (198)
                      ++|+++++++++|++++. ++   ++||++++|+++|++++.|+|.||+++++      |  .|..+|++|+ . .++|+
T Consensus        82 ~~a~~~~~~iv~G~~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~e~~p~~~~~~~E~~~f~~G~~~-~~v~~  160 (303)
T 1uf5_A           82 EKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLG-FPVYD  160 (303)
T ss_dssp             HHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHHCCCCSSC-SCEEE
T ss_pred             HHHHHhCeEEEEeeeEecCCCCCcceeeEEEEECCCCCEeeeEeeeecCCcccccccccccccchhhccCCCCC-CceEe
Confidence            999999999999999874 45   79999999999999999999999963332      3  5888999999 6 89999


Q ss_pred             eCCceEEEeeeecccCCcccccc--CCCCcc---cccccc
Q 029167          148 WNNLNLNLICFFDLIFDDDFPSR--LDFPLP---FLNRFS  182 (198)
Q Consensus       148 ~~~~~ig~~IC~d~~~pe~~r~~--~~~~~~---~~~~~~  182 (198)
                      ++++|+|++||||++|||++|.+  .|++++   .++.|.
T Consensus       161 ~~~~~ig~~ICyD~~fpe~~r~l~~~ga~ll~~~~~~~~~  200 (303)
T 1uf5_A          161 VDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTH  200 (303)
T ss_dssp             ETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBSC
T ss_pred             cCCceEEEEEecCccCHHHHHHHHHCCCCEEEEecCCccc
Confidence            99999999999999999999986  899999   455554

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}

Probab=100.00  E-value=5.1e-35  Score=255.78  Aligned_cols=171  Identities=22%  Similarity=0.272  Sum_probs=145.8

Q ss_pred             ccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh--hhHHHHhcCCCCCChHHHHHHHHHH
Q 029167            8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ--REDFFQRAKPYKDHPTILKMQELAK   84 (198)
Q Consensus         8 ~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~--~~~~~~~a~~~~~~~~~~~l~~~a~   84 (198)
                      +||||++|+++ .+|++.|++++.+++++|+++|||||||||++++||++.+.  ++.+.+.+        .+.+.++++
T Consensus         6 kmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY~~~Dl~~~~~~~~~~--------~~~l~~la~   77 (565)
T 4f4h_A            6 KTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYPPEDLLLRPAFYAAS--------DAALAELAA   77 (565)
T ss_dssp             CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGGGCHHHHHHH--------HHHHHHHHH
T ss_pred             ceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCCChHHhhhCHHHHHHH--------HHHHHHHHH
Confidence            59999999999 69999999999999999999999999999999999998864  23333322        233444443


Q ss_pred             ----HhCCEEEEeeeeccC----------------CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCee
Q 029167           85 ----ELGVVMPVSFFEEAN----------------NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFK  144 (198)
Q Consensus        85 ----~~~i~iv~g~~~~~~----------------~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~  144 (198)
                          ..++.+++|++.+.+                +++||+++++. +|++++.|+|+||++++.|.|.++|.+|+. +.
T Consensus        78 ~~~~~~~i~ivvG~p~~~~~~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~hLp~~~~f~E~r~f~~G~~-~~  155 (565)
T 4f4h_A           78 QLKPFAGLAVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASLIV-GGEVAGTYRKQDLPNTEVFDEKRYFATDAA-PY  155 (565)
T ss_dssp             HHTTSTTCEEEEEEEEECC-----CCCCCCTTSCCCSEEEEEEEEE-TTEEEEEEECCSCCCSTTCCGGGTCCCCCC-CC
T ss_pred             HhhhcCCcEEEEeeeeeecccccccccceecccCCCceEEEEEEEE-CCEEEEEEeeeecCCCcccceeccccCCCc-ce
Confidence                358999999987543                35999999996 799999999999999999999999999999 89


Q ss_pred             eEEeCCceEEEeeeecccCCcccccc--CCCCcccccccccccccc
Q 029167          145 VGAWNNLNLNLICFFDLIFDDDFPSR--LDFPLPFLNRFSKLNLQK  188 (198)
Q Consensus       145 ~~~~~~~~ig~~IC~d~~~pe~~r~~--~~~~~~~~~~~~~~~~~~  188 (198)
                      +|+++++|+|+.||||+||||.+|.+  .||+++++++.+.....+
T Consensus       156 v~~~~g~~iGv~IC~Dlwfpe~~r~la~~GA~ii~~psAs~~~~gk  201 (565)
T 4f4h_A          156 VFELNGVKFGVVICEDVWHASAAQLAKAAGAQVLIVPNGSPYHMNK  201 (565)
T ss_dssp             EEEETTEEEEECCGGGGGSSHHHHHHHHTTCSEEEEEECCBCCTTH
T ss_pred             eEEecCcEEEEEEeehhcccchhHHHHhCCCeeeecccccccccCc
Confidence            99999999999999999999999986  999999988877655443

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}

Probab=100.00  E-value=2.4e-34  Score=254.75  Aligned_cols=169  Identities=13%  Similarity=0.083  Sum_probs=140.7

Q ss_pred             CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHH
Q 029167            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKE   85 (198)
Q Consensus         7 ~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~   85 (198)
                      ++||||++|+++ .+|++.|.+++.+++++|+++|+|||||||++++||.+.+..   .  .... .++..+.++++|++
T Consensus         4 ~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~---~--~~~~-~~~~~~~l~~la~~   77 (634)
T 3ilv_A            4 STIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGCEDLF---L--TDWV-AETAIEYCFEIAAS   77 (634)
T ss_dssp             CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCGGGG---G--SHHH-HHHHHHHHHHHHTT
T ss_pred             CCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCChHHHh---h--Chhh-hHHHHHHHHHHHHh
Confidence            579999999999 689999999999999999999999999999999999987531   0  0001 13567889999998


Q ss_pred             h-CCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCC---------------eeeEEeC
Q 029167           86 L-GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTG---------------FKVGAWN  149 (198)
Q Consensus        86 ~-~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~---------------~~~~~~~  149 (198)
                      + ++.+++|++++.++++||+++++ ++|++++.|+|.||+++++|.|.++|++|+..               ..+|+++
T Consensus        78 ~~~i~ivvG~p~~~~~~lyNsa~vi-~~G~il~~y~K~hL~~~~~f~E~r~f~pG~~~~~~~~~~~g~~~p~g~~vf~~~  156 (634)
T 3ilv_A           78 CTDITVSLGLPMRIAGITYNCVCLV-ENGIVKGFSAKQFLANEGVHYETRWFTAWPRNHTTTFLYNDVKYPFGDVLYNVK  156 (634)
T ss_dssp             CTTSEEEEEEEEEETTEEEEEEEEE-ETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTCEEEEEETTEEEEEESCCEEET
T ss_pred             CCCCEEEEeeeEeeCCCccEEEEEE-ECCeEEEEEcCEeCCCCCCcChhhhcCCCCccccceecccCcccccCCeEEEEC
Confidence            6 99999999999899999999999 79999999999999999999999999999872               1689999


Q ss_pred             CceEEEeeeecccCCc-ccccc--CCCCcccccccc
Q 029167          150 NLNLNLICFFDLIFDD-DFPSR--LDFPLPFLNRFS  182 (198)
Q Consensus       150 ~~~ig~~IC~d~~~pe-~~r~~--~~~~~~~~~~~~  182 (198)
                      ++|+|+.||||+|||+ ++|.+  .||+++++++.+
T Consensus       157 g~~iG~~IC~D~~fPe~~~r~la~~GAdii~~psas  192 (634)
T 3ilv_A          157 DARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSAS  192 (634)
T ss_dssp             TEEEEECCTTC----------CGGGTCSEEEEEECC
T ss_pred             CEEEEEEEeccccCChHHHHHHHHCCCcEEEEecCC
Confidence            9999999999999998 88885  899999976654

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}

Probab=100.00  E-value=3.3e-34  Score=252.37  Aligned_cols=168  Identities=21%  Similarity=0.290  Sum_probs=148.6

Q ss_pred             CCCccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhh--hHHHHhcCCCCCChHHHHHHH
Q 029167            5 KRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR--EDFFQRAKPYKDHPTILKMQE   81 (198)
Q Consensus         5 ~~~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~--~~~~~~a~~~~~~~~~~~l~~   81 (198)
                      |+.+||||++|+++ ..|++.|++++.+++++|+++|+|||||||++++||++.+..  +++.        ....+.|++
T Consensus         1 M~~~~rvA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~~dl~~~~~~~--------~~~~~~l~~   72 (590)
T 3n05_A            1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFV--------EASRTALRE   72 (590)
T ss_dssp             -CEEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCSCCGGGGGCHHHH--------HHHHHHHHH
T ss_pred             CCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCCChHHHhhCHHHH--------HHHHHHHHH
Confidence            55679999999999 699999999999999999999999999999999999987631  1111        356788999


Q ss_pred             HHHHh--C----CEEEEeeeeccC----------CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeee
Q 029167           82 LAKEL--G----VVMPVSFFEEAN----------NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKV  145 (198)
Q Consensus        82 ~a~~~--~----i~iv~g~~~~~~----------~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~  145 (198)
                      +|+++  +    +++++|++++.+          +++||++++|+ +|++++.|+|+||++++.|.|.++|++|+. +.+
T Consensus        73 la~~~~~~~~~~i~ivvG~~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~~L~~~~~f~E~r~f~~G~~-~~v  150 (590)
T 3n05_A           73 LAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPNYGVFDEFRYFVPGDT-MPI  150 (590)
T ss_dssp             HHHHHHHTTCTTSCEEEEEEEECSSCBTTTTBCTTCEEEEEEEEE-TTEEEEEEECCCCCSSSSCCHHHHCCCCCE-EEE
T ss_pred             HHHhhhhccCCceEEEEeeEEEEcCcccccccccCCeeEEEEEEe-CCEEEEEEeCccCCCCCccCccccccCCCc-ceE
Confidence            99988  6    999999998753          37999999997 999999999999999999999999999998 899


Q ss_pred             EEeCCceEEEeeeecccC-Ccccccc--CCCCcccccccc
Q 029167          146 GAWNNLNLNLICFFDLIF-DDDFPSR--LDFPLPFLNRFS  182 (198)
Q Consensus       146 ~~~~~~~ig~~IC~d~~~-pe~~r~~--~~~~~~~~~~~~  182 (198)
                      |+++++|+|+.||||+|| |+.++.+  .||+++++++.+
T Consensus       151 ~~~~g~~iG~~IC~D~~f~pe~~~~la~~Ga~ii~~psa~  190 (590)
T 3n05_A          151 VRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNAS  190 (590)
T ss_dssp             EEETTEEEEEEEGGGGGSTTSHHHHHHHTTCSEEEEEECC
T ss_pred             EEECCEEEEEEeehhhccCChHHHHHHHcCCCEEEEecCC
Confidence            999999999999999999 9999986  899999876543

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*

Probab=100.00  E-value=6.5e-34  Score=253.31  Aligned_cols=170  Identities=20%  Similarity=0.183  Sum_probs=148.8

Q ss_pred             CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh--hhHHHHhcCCCCCChHHHHHHHHH
Q 029167            7 REVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ--REDFFQRAKPYKDHPTILKMQELA   83 (198)
Q Consensus         7 ~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~--~~~~~~~a~~~~~~~~~~~l~~~a   83 (198)
                      +.||||++|+++ .+|++.|.+++.+++++|+++|+|||||||++++||.+.+.  ..++.+.+     .+.++.|.+++
T Consensus        11 g~~rVAl~Q~~~~~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~~dl~~~~~~~~~~-----~~~l~~l~~~a   85 (680)
T 3sdb_A           11 GFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAV-----EDALLDLVTES   85 (680)
T ss_dssp             TEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCGGGGGGGGCHHHHHHH-----HHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCChHHHhhCHHHHHhh-----HHHHHHHHHHh
Confidence            469999999999 69999999999999999999999999999999999998764  22332222     46788999999


Q ss_pred             HHhCCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCe---------------eeE--
Q 029167           84 KELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGF---------------KVG--  146 (198)
Q Consensus        84 ~~~~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~---------------~~~--  146 (198)
                      +++++++++|++++.++++||++++++ +|++++.|+|+||+++++|.|.++|++|+...               .+|  
T Consensus        86 ~~~~i~ivvG~p~~~~~~lyNsa~vi~-~G~il~~y~K~hL~~~~~f~E~r~F~~G~~~~~~i~~~g~~vpfg~~~vf~~  164 (680)
T 3sdb_A           86 ADLLPVLVVGAPLRHRHRIYNTAVVIH-RGAVLGVVPKSYLPTYREFYERRQMAPGDGERGTIRIGGADVAFGTDLLFAA  164 (680)
T ss_dssp             TTCSSEEEEEEEEEETTEEEEEEEEEE-TTEEEEEEECSCCCEETTEEGGGTEECCTTCCSEEEETTEEEEBSSCEEEEE
T ss_pred             hcCCcEEEEeceEEeCCCceEEEEEEe-CCCEEEEEeeecCCCCCccChhhhcCCCCCCCceeeecCcccccCCceeEee
Confidence            999999999999998999999999998 89999999999999999999999999998731               146  


Q ss_pred             -EeCCceEEEeeeecccCCccc-ccc--CCCCcccccccc
Q 029167          147 -AWNNLNLNLICFFDLIFDDDF-PSR--LDFPLPFLNRFS  182 (198)
Q Consensus       147 -~~~~~~ig~~IC~d~~~pe~~-r~~--~~~~~~~~~~~~  182 (198)
                       +++++|+|+.||||+|||+.. |.+  .||+++++++.+
T Consensus       165 ~~~~g~riGv~IC~Dl~fPe~~~r~la~~GAdiil~pSas  204 (680)
T 3sdb_A          165 SDLPGFVLHVEIAEDMFVPMPPSAEAALAGATVLANLSGS  204 (680)
T ss_dssp             TTCTTCEEEEEEGGGGGSSSCHHHHHHHHTCCEEEEECCC
T ss_pred             eccCCeEEEEEEeccccccccHHHHHHhcCCeEEEEecCC
Confidence             689999999999999999996 664  899999876654

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A

Probab=100.00  E-value=2.7e-33  Score=231.79  Aligned_cols=165  Identities=16%  Similarity=0.162  Sum_probs=141.3

Q ss_pred             CccEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHh--CCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHH
Q 029167            7 REVVVSALQFAC-----TDDVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM   79 (198)
Q Consensus         7 ~~~~ia~~Q~~~-----~~~~~~n~~~i~~~i~~A~~--~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l   79 (198)
                      ++||||++|+++     ..+++.|++++.+++++|.+  +|+|||||||++++||....  .++.+.++..+ ++.++.|
T Consensus        11 ~~~kValvQ~~i~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~--~~~~~~a~~~~-~~~~~~l   87 (341)
T 2uxy_A           11 DTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYDP--AEMMETAVAIP-GEETEIF   87 (341)
T ss_dssp             TEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCCSH--HHHHHHCBCSS-SHHHHHH
T ss_pred             CccEEEEEECCcccCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcccccCCCH--HHHHHHhccCC-CHHHHHH
Confidence            679999999995     35789999999999999987  79999999999999975432  34555666554 6899999


Q ss_pred             HHHHHHhCCEEEEeee-eccC----CeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEe-CCceE
Q 029167           80 QELAKELGVVMPVSFF-EEAN----NAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAW-NNLNL  153 (198)
Q Consensus        80 ~~~a~~~~i~iv~g~~-~~~~----~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~-~~~~i  153 (198)
                      +++|+++++++++|++ ++.+    +++||++++|+++|++++.|+|.||+.     |..+|++|+. ..+|++ .|.|+
T Consensus        88 ~~~a~~~~i~iv~G~~ge~~~~~~~~~~yNsa~vi~p~G~i~~~Y~K~hlf~-----e~~~f~pG~~-~~v~~~~~G~ri  161 (341)
T 2uxy_A           88 SRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPWC-----PIEGWYPGGQ-TYVSEGPKGMKI  161 (341)
T ss_dssp             HHHHHHHTCEEEEEEEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSSCCT-----TTCCCBCCCC-CCCEECGGGCEE
T ss_pred             HHHHHHhCcEEEEEeeeeEcCCCCCCceEEEEEEECCCCcEEEEEEeeccCC-----CccceeCCCC-ceEEECCCCCEE
Confidence            9999999999999998 7643    349999999999999999999999853     4567999998 789999 46799


Q ss_pred             EEeeeecccCCcccccc--CCCCcccccc
Q 029167          154 NLICFFDLIFDDDFPSR--LDFPLPFLNR  180 (198)
Q Consensus       154 g~~IC~d~~~pe~~r~~--~~~~~~~~~~  180 (198)
                      |++||||++|||++|.+  .|++++++++
T Consensus       162 G~~ICyD~~fpe~~r~l~~~Gadlll~ps  190 (341)
T 2uxy_A          162 SLIIXDDGNYPEIWRDCAMKGAELIVRCQ  190 (341)
T ss_dssp             EEEEGGGGGSHHHHHHHHHTTCSEEEEEE
T ss_pred             EEEEccCCcCcHHHHHHHHcCCCEEEEcC
Confidence            99999999999999986  8999998654

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A

Probab=100.00  E-value=3.2e-33  Score=230.82  Aligned_cols=166  Identities=19%  Similarity=0.144  Sum_probs=138.8

Q ss_pred             CccEEEEEeCCC-----CCCHHHHHHHHHHHHHHHHh--CCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHH
Q 029167            7 REVVVSALQFAC-----TDDVSTNLATAERLVRAAHG--KGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKM   79 (198)
Q Consensus         7 ~~~~ia~~Q~~~-----~~~~~~n~~~i~~~i~~A~~--~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l   79 (198)
                      .+||||++|+++     ..+.+.|++++.+++++|++  +|+|||||||++++||.+..  .++.+.++..+ ++.++.|
T Consensus        12 ~~~~Va~vQ~~i~~~~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~~~~~--~~~~~~a~~~~-~~~~~~l   88 (334)
T 2dyu_A           12 EGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAK--WLSEEFLLDVP-GKETELY   88 (334)
T ss_dssp             -CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTTT--TTSGGGCBCSS-SHHHHHH
T ss_pred             CccEEEEEecCCccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccCCCCh--hHHHHhhccCC-CHHHHHH
Confidence            469999999985     35789999999999999987  79999999999999976432  12334444433 6889999


Q ss_pred             HHHHHHhCCEEEEeeeeccC-Ce--eEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEe-CCceEEE
Q 029167           80 QELAKELGVVMPVSFFEEAN-NA--HYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAW-NNLNLNL  155 (198)
Q Consensus        80 ~~~a~~~~i~iv~g~~~~~~-~~--~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~-~~~~ig~  155 (198)
                      +++|+++++++++|++++.+ ++  +||++++|+++|++++.|+|.||+.     |..+|++|+...++|++ .|.|+|+
T Consensus        89 ~~~a~~~~i~iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hlf~-----e~~~f~~G~~~~~v~~~~~g~~iG~  163 (334)
T 2dyu_A           89 AKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFPWN-----PIEPWYPGDLGMPVCEGPGGSKLAV  163 (334)
T ss_dssp             HHHHHHHTCEEEEEEEECCSSTTSCCEEEEEEECTTSCEEEEEECSSCCT-----TTCCCCCCCSCCCCEECGGGCEEEE
T ss_pred             HHHHHHhCeEEEEeeEEECCCCCceeEEEEEEECCCCCEEEEEeeccCCC-----CcccCcCCCCCceeEECCCCCEEEE
Confidence            99999999999999998753 44  9999999999999999999999753     45678999974459998 4679999


Q ss_pred             eeeecccCCcccccc--CCCCcccccc
Q 029167          156 ICFFDLIFDDDFPSR--LDFPLPFLNR  180 (198)
Q Consensus       156 ~IC~d~~~pe~~r~~--~~~~~~~~~~  180 (198)
                      +||||++|||++|.+  .|++++++++
T Consensus       164 ~ICyD~~fpe~~r~~~~~Gadlil~ps  190 (334)
T 2dyu_A          164 CICHDGMIPELAREAAYKGCNVYIRIS  190 (334)
T ss_dssp             EEGGGGGCHHHHHHHHHTTCSEEEEEE
T ss_pred             EEECCCCchHHHHHHHHcCCCEEEEeC
Confidence            999999999999986  8999998754

>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1

Probab=100.00  E-value=1.8e-33  Score=240.05  Aligned_cols=170  Identities=18%  Similarity=0.187  Sum_probs=143.2

Q ss_pred             CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh
Q 029167            7 REVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL   86 (198)
Q Consensus         7 ~~~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~   86 (198)
                      ++||||++|+++..|.+.|++++.+++++|+++|+|||||||++++++.....   ....++..+ ++.++.|+++|+++
T Consensus        13 ~~~kVa~vQ~~~~~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~~~~~~---~~~~a~~~~-~~~~~~l~~~A~~~   88 (440)
T 1ems_A           13 GRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNE---QIDLAMATD-CEYMEKYRELARKH   88 (440)
T ss_dssp             SEEEEEEECBCCCSCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSHHH---HHHHHHHHH-HHHHHHHHHHHHHT
T ss_pred             CCceEEEEecCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccCcchhH---HHHhhccCC-CHHHHHHHHHHHHc
Confidence            46999999999988999999999999999999999999999999987764321   112222111 57889999999999


Q ss_pred             CCEEEEeeee---c-cCCeeEEEEEEEcCCCCeeeeeeeccCCC-----CCCCCccccccCCCCCeee-EEeCCceEEEe
Q 029167           87 GVVMPVSFFE---E-ANNAHYNSIAIIDADGSDLGLYRKSHIPD-----GPGYQEKFYFNPGDTGFKV-GAWNNLNLNLI  156 (198)
Q Consensus        87 ~i~iv~g~~~---~-~~~~~yNs~~~i~~~G~il~~y~K~~l~~-----~~~~~e~~~~~~G~~~~~~-~~~~~~~ig~~  156 (198)
                      ++++++|++.   + .++++||++++|+++|++++.|+|.||++     +..|.|..+|++|+. ..+ |+++++|+|++
T Consensus        89 ~i~iv~G~~~~~e~~~~~~~yNs~~~i~~~G~i~~~yrK~hL~~~~~P~~~~~~E~~~f~~G~~-~~~~~~~~~~~iG~~  167 (440)
T 1ems_A           89 NIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTE-MIPPVDTPIGRLGLS  167 (440)
T ss_dssp             TCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCS-CCCCEEETTEEECCC
T ss_pred             CeEEEeccccccccCCCCcEEEEEEEECCCCcEEEEEeeeeecCccCCCCCcccccccccCCCC-CceeEECCCeeEEEE
Confidence            9999999664   3 35789999999999999999999999963     223468889999998 666 99999999999


Q ss_pred             eeecccCCcccccc--CCCCccccccc
Q 029167          157 CFFDLIFDDDFPSR--LDFPLPFLNRF  181 (198)
Q Consensus       157 IC~d~~~pe~~r~~--~~~~~~~~~~~  181 (198)
                      ||||.+|||++|.+  .|++++++++|
T Consensus       168 ICyD~~fpe~~r~l~~~Ga~il~~psa  194 (440)
T 1ems_A          168 ICYDVRFPELSLWNRKRGAQLLSFPSA  194 (440)
T ss_dssp             CGGGGGCHHHHHHHHHTTCSEEECCBC
T ss_pred             EeccccChHHHHHHHHcCCcEEEECCc
Confidence            99999999999986  89999987664

>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}

Probab=90.34  E-value=1.1  Score=34.99  Aligned_cols=70  Identities=20%  Similarity=0.279  Sum_probs=43.8

Q ss_pred             HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-ccCCe-eEEEEEEE
Q 029167           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANNA-HYNSIAII  109 (198)
Q Consensus        32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~~~~-~yNs~~~i  109 (198)
                      ..+....+|+|+|+.|-.+..++.                 ......++..|.+++++++..... ..++. .+=.+.++
T Consensus       173 ~~r~l~~~Ga~li~~ps~~~~~~~-----------------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii  235 (283)
T 3hkx_A          173 MVRAAAARGAQLVLVPTALAGDET-----------------SVPGILLPARAVENGITLAYANHCGPEGGLVFDGGSVVV  235 (283)
T ss_dssp             HHHHHHHTTCSEEEEECCCBSCCT-----------------HHHHTHHHHHHHHHTCEEEEECBEEEETTEEEECCCEEE
T ss_pred             HHHHHHHCCCCEEEECCCCCCccc-----------------HHHHHHHHHHHHHhCCEEEEEccccCCCCeEEeeEEEEE
Confidence            344455679999999976543221                 011234667789999999874332 22332 23347888


Q ss_pred             cCCCCeeee
Q 029167          110 DADGSDLGL  118 (198)
Q Consensus       110 ~~~G~il~~  118 (198)
                      +|+|+++..
T Consensus       236 ~p~G~vl~~  244 (283)
T 3hkx_A          236 GPAGQPLGE  244 (283)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCCEEEe
Confidence            999998754

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=87.39  E-value=3.4  Score=32.50  Aligned_cols=73  Identities=10%  Similarity=0.100  Sum_probs=49.4

Q ss_pred             cEEEEEeCCCC------CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHH
Q 029167            9 VVVSALQFACT------DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQEL   82 (198)
Q Consensus         9 ~~ia~~Q~~~~------~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~   82 (198)
                      +++..+..+..      ...+...+.+.+.++.|.+-|++.|++|-.  ..   ......+...+      +.++.+.+.
T Consensus        90 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~--~~---~~~~~~~~~~~------~~l~~l~~~  158 (305)
T 3obe_A           90 LRISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMVQPSL--PR---IENEDDAKVVS------EIFNRAGEI  158 (305)
T ss_dssp             CEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEECCC--CC---CSSHHHHHHHH------HHHHHHHHH
T ss_pred             CeEEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeCCC--CC---CCCHHHHHHHH------HHHHHHHHH
Confidence            66766665541      234667788899999999999999999832  11   11122333332      567888889


Q ss_pred             HHHhCCEEEE
Q 029167           83 AKELGVVMPV   92 (198)
Q Consensus        83 a~~~~i~iv~   92 (198)
                      |+++|+.+.+
T Consensus       159 a~~~Gv~l~l  168 (305)
T 3obe_A          159 TKKAGILWGY  168 (305)
T ss_dssp             HHTTTCEEEE
T ss_pred             HHHcCCEEEE
Confidence            9999999876

>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}

Probab=86.69  E-value=2.2  Score=33.30  Aligned_cols=68  Identities=15%  Similarity=0.033  Sum_probs=42.6

Q ss_pred             HHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-ccCC-eeEEEEEEEcC
Q 029167           34 RAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAIIDA  111 (198)
Q Consensus        34 ~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~~~-~~yNs~~~i~~  111 (198)
                      +....+|+|+|+.|-.+....     .            ......++..|.+++++++..... ..++ .++=.+.+++|
T Consensus       176 r~~~~~Gadli~~psa~~~~~-----~------------~~~~~~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p  238 (281)
T 3p8k_A          176 RYPARSGAKIAFYVAQWPMSR-----L------------QHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINP  238 (281)
T ss_dssp             HHHHHTTCCEEEEEECCBGGG-----H------------HHHHHHHHHHHHHHTSEEEEEECEEECSSCEEECCCEEECT
T ss_pred             HHHHHCCCCEEEECCCCCCcc-----H------------HHHHHHHHHHHHHcCCEEEEEccCcCCCCcEEeeeEEEECC
Confidence            344567999999996443210     0            011234667789999999864332 2233 34455788899


Q ss_pred             CCCeeee
Q 029167          112 DGSDLGL  118 (198)
Q Consensus       112 ~G~il~~  118 (198)
                      +|+++..
T Consensus       239 ~G~vl~~  245 (281)
T 3p8k_A          239 NGDLVGE  245 (281)
T ss_dssp             TSCEEEE
T ss_pred             CCCEEEe
Confidence            9998765

>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A

Probab=84.52  E-value=3.9  Score=32.95  Aligned_cols=70  Identities=20%  Similarity=0.200  Sum_probs=43.9

Q ss_pred             HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-ccCC-eeEEEEEEE
Q 029167           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAII  109 (198)
Q Consensus        32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~~~-~~yNs~~~i  109 (198)
                      ..+.+..+|+|+|+.|-.+..  ..   .            ......++..|.+++++++..... .+++ .++=.++++
T Consensus       174 ~~r~l~~~Gadlll~psa~~~--~~---~------------~~~~~l~~arA~En~~~vv~an~~G~~~~~~~~G~S~Ii  236 (341)
T 2uxy_A          174 IWRDCAMKGAELIVRCQGYMY--PA---K------------DQQVMMAKAMAWANNCYVAVANAAGFDGVYSYFGHSAII  236 (341)
T ss_dssp             HHHHHHHTTCSEEEEEECCBT--TC---H------------HHHHHHHHHHHHHHTCEEEEEECEEECSSCEEECCCEEE
T ss_pred             HHHHHHHcCCCEEEEcCCCCC--Cc---H------------HHHHHHHHHHHHhCCcEEEEECCCCCCCCceeeeEEEEE
Confidence            344455679999999965421  10   0            122345677789999999874332 2222 344467888


Q ss_pred             cCCCCeeee
Q 029167          110 DADGSDLGL  118 (198)
Q Consensus       110 ~~~G~il~~  118 (198)
                      +|+|+++..
T Consensus       237 dp~G~vla~  245 (341)
T 2uxy_A          237 GFDGRTLGE  245 (341)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCCEEEE
Confidence            999998764

>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A

Probab=83.32  E-value=3.5  Score=31.60  Aligned_cols=66  Identities=18%  Similarity=-0.001  Sum_probs=42.3

Q ss_pred             HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-ccCCe-eEEEEEEEc
Q 029167           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANNA-HYNSIAIID  110 (198)
Q Consensus        33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~~~~-~yNs~~~i~  110 (198)
                      .+....+|+|+|+.|-.+...                    .....++..|.+++++++..... ..++. .+=.+.+++
T Consensus       155 ~r~~~~~ga~li~~ps~~~~~--------------------~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii~  214 (262)
T 3ivz_A          155 ARTLALKGADVIAHPANLVMP--------------------YAPRAMPIRALENKVYTVTADRVGEERGLKFIGKSLIAS  214 (262)
T ss_dssp             HHHHHHTTCSEEEEEECCCSS--------------------CHHHHHHHHHHHHTCEEEEEECCSEETTEECCCCCEEEC
T ss_pred             HHHHHHCCCCEEEEcCCCCch--------------------HHHHHHHHHHHhcCcEEEEECCCCcCCCceEeeeEEEEC
Confidence            344556799999999775321                    11234667789999999874332 12222 233468889


Q ss_pred             CCCCeeee
Q 029167          111 ADGSDLGL  118 (198)
Q Consensus       111 ~~G~il~~  118 (198)
                      |+|+++..
T Consensus       215 p~G~il~~  222 (262)
T 3ivz_A          215 PKAEVLSM  222 (262)
T ss_dssp             TTSCEEEE
T ss_pred             CCCCEeec
Confidence            99998754

>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}

Probab=83.31  E-value=0.77  Score=34.31  Aligned_cols=47  Identities=17%  Similarity=0.349  Sum_probs=27.8

Q ss_pred             CCCCCCCccEEEEEeCCCC----CCHHHHHHHHHHHHHHHHhCCCcEEEeCCCC
Q 029167            1 MEKGKRREVVVSALQFACT----DDVSTNLATAERLVRAAHGKGANIILIQELF   50 (198)
Q Consensus         1 ~~~~~~~~~~ia~~Q~~~~----~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~   50 (198)
                      |+++..+.+++-++..|+.    .+.....+.+.+.|+   +.++|||+|.|..
T Consensus         4 ~~~~~~~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~---~~~pDIi~LQEv~   54 (256)
T 4fva_A            4 MTAEDLKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVK---NVNPDILFLQEVV   54 (256)
T ss_dssp             ----CCTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHH---HHCCSEEEEEEEC
T ss_pred             CCCCcCCCCEEEEEEEecCCCCCcCHHHHHHHHHHHHH---HcCCCEEEEEecC
Confidence            3444445567777778872    234444555555554   4489999999974

>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A

Probab=83.02  E-value=4.4  Score=32.48  Aligned_cols=70  Identities=19%  Similarity=0.061  Sum_probs=43.9

Q ss_pred             HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec-c-CCeeEEEEEEE
Q 029167           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE-A-NNAHYNSIAII  109 (198)
Q Consensus        32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~-~-~~~~yNs~~~i  109 (198)
                      ..+.+..+|+|+|+.|-.+....  .               ......++..|.+++++++.....- . +..++=.+.++
T Consensus       174 ~~r~~~~~Gadlil~psaw~~~~--~---------------~~~~~~~~arA~En~~~vv~an~~G~~~~~~~~G~S~Ii  236 (334)
T 2dyu_A          174 LAREAAYKGCNVYIRISGYSTQV--N---------------DQWILTNRSNAWHNLMYTVSVNLAGYDNVFYYFGEGQIC  236 (334)
T ss_dssp             HHHHHHHTTCSEEEEEESSCTTS--H---------------HHHHHHHHHHHHHHTCEEEEEECSBSSSSCCCCCEEEEE
T ss_pred             HHHHHHHcCCCEEEEeCCCCCCc--H---------------HHHHHHHHHHHHhCCCEEEEECCCcCCCCeeeeeEEEEE
Confidence            34445567999999996543210  0               1223456777899999998743321 2 22344667788


Q ss_pred             cCCCCeeee
Q 029167          110 DADGSDLGL  118 (198)
Q Consensus       110 ~~~G~il~~  118 (198)
                      +|+|+++..
T Consensus       237 dp~G~vla~  245 (334)
T 2dyu_A          237 NFDGTTLVQ  245 (334)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCCEeee
Confidence            999998764

>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1

Probab=80.40  E-value=3.7  Score=31.95  Aligned_cols=70  Identities=14%  Similarity=0.093  Sum_probs=42.4

Q ss_pred             HHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeeec---cCCeeEEEEEEE
Q 029167           33 VRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEE---ANNAHYNSIAII  109 (198)
Q Consensus        33 i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~~---~~~~~yNs~~~i  109 (198)
                      .+....+|+|+|+.|-.+..  ...  .            ......++..|.+++++++.....-   .+..++=.+.++
T Consensus       178 ~r~l~~~Ga~ll~~ps~~~~--~~~--~------------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii  241 (291)
T 1f89_A          178 AMLSARKGAFAMIYPSAFNT--VTG--P------------LHWHLLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIVV  241 (291)
T ss_dssp             HHHHHHTTEEEEEEECCCBT--THH--H------------HHHHHHHHHHHHHHTSEEEEECCCCCTTSSSCBCCCCEEE
T ss_pred             HHHHHhhCCCEEEECCcCCC--CCc--H------------HHHHHHHHHHHHHcCCEEEEecCccCCCCCCeeeeEEEEE
Confidence            34445679999999953321  100  0            0122446677899999998754322   122344467889


Q ss_pred             cCCCCeeee
Q 029167          110 DADGSDLGL  118 (198)
Q Consensus       110 ~~~G~il~~  118 (198)
                      +|+|+++..
T Consensus       242 ~p~G~vl~~  250 (291)
T 1f89_A          242 DPRGKIVAE  250 (291)
T ss_dssp             CTTSCEEEE
T ss_pred             CCCCCEEEe
Confidence            999998754

>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}

Probab=80.13  E-value=6.5  Score=30.07  Aligned_cols=62  Identities=13%  Similarity=-0.088  Sum_probs=39.8

Q ss_pred             CCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-ccCC--eeEEEEEEEcCCCCee
Q 029167           40 GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN--AHYNSIAIIDADGSDL  116 (198)
Q Consensus        40 g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~~~--~~yNs~~~i~~~G~il  116 (198)
                      |+|+|+.|-.+....     .            ......++..|.+++++++..... ..++  ..+=.+.+++|+|+++
T Consensus       165 ga~~i~~~s~w~~~~-----~------------~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~ii~p~G~v~  227 (266)
T 2e11_A          165 DFDLQLFVANWPSAR-----A------------YAWKTLLRARAIENLCFVAAVNRVGVDGNQLHYAGDSAVIDFLGQPQ  227 (266)
T ss_dssp             SCSEEEEEECCCGGG-----H------------HHHHHHHHHHHHHTTSEEEEEECEEECTTSCEEEEEEEEECTTSCEE
T ss_pred             CCcEEEEeCCCCCCc-----h------------HHHHHHHHHHHHhcCcEEEEEcCCcCCCCCceEeeeEEEECCCCcee
Confidence            899999987643210     0            011234667789999999874332 2222  4445688999999987


Q ss_pred             ee
Q 029167          117 GL  118 (198)
Q Consensus       117 ~~  118 (198)
                      ..
T Consensus       228 ~~  229 (266)
T 2e11_A          228 VE  229 (266)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A

Probab=80.01  E-value=8.1  Score=29.76  Aligned_cols=62  Identities=16%  Similarity=0.229  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEE
Q 029167           23 STNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPV   92 (198)
Q Consensus        23 ~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~   92 (198)
                      +..++.+.+.++.|.+-|++.|+++=..  .+........+...      .+.++.+.+.|+++|+.+.+
T Consensus       104 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~--~~~~~~~~~~~~~~------~~~l~~l~~~a~~~Gv~l~l  165 (295)
T 3cqj_A          104 AQGLEIMRKAIQFAQDVGIRVIQLAGYD--VYYQEANNETRRRF------RDGLKESVEMASRAQVTLAM  165 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEECCCS--CSSSCCCHHHHHHH------HHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEECCCC--CCcCcCHHHHHHHH------HHHHHHHHHHHHHhCCEEEE
Confidence            4567788889999999999999987211  11111111122222      25667888889999999877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d1uf5a_	303	d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrol	4e-19
d1j31a_	262	d.160.1.2 (A:) Hypothetical protein PH0642 {Archae	4e-17
d1emsa2	271	d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-te	2e-16
d1f89a_	281	d.160.1.1 (A:) hypothetical protein yl85 {Baker's	2e-09

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

 Score = 80.9 bits (198), Expect = 4e-19
 Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 18/179 (10%)

Query: 7   REVVVSALQFACT---DDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQ---AQR 60
           R+++++  Q       +     +     ++  A  +GAN I+  EL    +F +      
Sbjct: 2   RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDE 61

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF----FEEANNAHYNSIAIIDADGSDL 116
            +     +     P +  + E A ELG+   + +     E      +N+  ++D  G  +
Sbjct: 62  AELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIV 121

Query: 117 GLYRKSHIPDGPGYQE--------KFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDF 167
           G YRK H+P    Y+         K YF PGD GF V   +   + +    D  + + +
Sbjct: 122 GKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAW 180

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 74.7 bits (182), Expect = 4e-17
 Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 8/150 (5%)

Query: 11  VSALQFACTD-DVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKP 69
           V  +Q      ++  N + AE+L++ A  +GA ++++ ELF+  Y  +  RE+ F  A+ 
Sbjct: 4   VGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFE-SREEVFDVAQQ 62

Query: 70  YKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPG 129
             +  T   + ELA+ELG+ +     E++ N  YNS  ++   G  +G YRK H+     
Sbjct: 63  IPEGETTTFLMELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGY-IGKYRKIHLF---- 117

Query: 130 YQEKFYFNPGDTGFKVGAWNNLNLN-LICF 158
           Y+EK +F PGD GFKV       +  +ICF
Sbjct: 118 YREKVFFEPGDLGFKVFDIGFAKVGVMICF 147

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 72.9 bits (177), Expect = 2e-16
 Identities = 25/171 (14%), Positives = 52/171 (30%), Gaps = 3/171 (1%)

Query: 1   MEKGKRREVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQR 60
           M  G+     ++  Q    +D+  N   A+ ++  A  K   ++ + E F+     + ++
Sbjct: 1   MATGRHF---IAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQ 57

Query: 61  EDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYR 120
            D                 ++    L +              +N+  IID+DG     Y 
Sbjct: 58  IDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYN 117

Query: 121 KSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDDFPSRL 171
           K H+ D     +        +         ++  +      I  D     L
Sbjct: 118 KLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPEL 168

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 281

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 2e-09
 Identities = 14/99 (14%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 7   REVVVSALQFACT-DDVSTNLATAERLVR--AAHGKGANIILIQELFEGYYFCQAQREDF 63
           +++ V+ +Q + +  D   NL  A   +           ++++ E F   Y    Q   +
Sbjct: 8   QKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTD-QFRKY 66

Query: 64  FQRAKPYKDHPTILKMQELAKELGVVMPVSFFEEANNAH 102
            +   P +   ++  +  LA +  +++      E +   
Sbjct: 67  SEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKT 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d1j31a_	262	Hypothetical protein PH0642 {Archaeon Pyrococcus h	100.0
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	100.0
d1f89a_	281	hypothetical protein yl85 {Baker's yeast (Saccharo	100.0
d1emsa2	271	NIT-FHIT fusion protein, N-terminal domain {Nemato	100.0
d1uf5a_	303	N-carbamoyl-D-aminoacid amidohydrolase {Agrobacter	87.08
d1j31a_	262	Hypothetical protein PH0642 {Archaeon Pyrococcus h	84.23

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=3.2e-36  Score=238.87  Aligned_cols=169  Identities=28%  Similarity=0.420  Sum_probs=148.2

Q ss_pred             ccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHh
Q 029167            8 EVVVSALQFAC-TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKEL   86 (198)
Q Consensus         8 ~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~   86 (198)
                      .||||++|+++ ..|+++|++++.+++++|.++|+|||||||++++||.+... ......+.....++..+.++++|+++
T Consensus         1 ~~ria~~Q~~~~~~d~e~nl~~i~~~i~~A~~~gadlvvfPE~~l~gy~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~   79 (262)
T d1j31a_           1 MVKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESR-EEVFDVAQQIPEGETTTFLMELAREL   79 (262)
T ss_dssp             CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCCSSH-HHHHTTCBCTTTSHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCchhhh-hHhhhhhhhcccCHHHHHHHHhhhcc
Confidence            38999999998 79999999999999999999999999999999999987653 22333444444478999999999999


Q ss_pred             CCEEEEeeeeccCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCCccccccCCCCCeeeEEeCCceEEEeeeecccCCcc
Q 029167           87 GVVMPVSFFEEANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVGAWNNLNLNLICFFDLIFDDD  166 (198)
Q Consensus        87 ~i~iv~g~~~~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~e~~~~~~G~~~~~~~~~~~~~ig~~IC~d~~~pe~  166 (198)
                      ++.+++|++++.++++||+++++++ |+++..|+|.||++    .|..+|.+|+..+++|+++++|+|++||+|.+|||+
T Consensus        80 ~i~i~~g~~~~~~~~~~n~~~~i~~-g~~~~~y~K~~l~~----~e~~~~~~G~~~~~v~~~~~~~ig~~IC~D~~~pe~  154 (262)
T d1j31a_          80 GLYIVAGTAEKSGNYLYNSAVVVGP-RGYIGKYRKIHLFY----REKVFFEPGDLGFKVFDIGFAKVGVMICFDWFFPES  154 (262)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEEEET-TEEEEEEECSSCCT----THHHHCCCCCSCSCEEECSSCEEEECCGGGGGSHHH
T ss_pred             CceEEeeeeecccccccccceEEEe-eeEEEEEeeeecCc----cCceeECCCCCCceEEEeCCceEEEEEehhhhhhHH
Confidence            9999999999999999999999985 88999999999986    477889999886789999999999999999999998


Q ss_pred             cccc--CCCCcccccccc
Q 029167          167 FPSR--LDFPLPFLNRFS  182 (198)
Q Consensus       167 ~r~~--~~~~~~~~~~~~  182 (198)
                      +|.+  +|+++++++++.
T Consensus       155 ~~~~~~~ga~lil~p~~~  172 (262)
T d1j31a_         155 ARTLALKGAEIIAHPANL  172 (262)
T ss_dssp             HHHHHHTTCSEEEEECCC
T ss_pred             HHHHHHhccccccCCccc
Confidence            8885  888888765443

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=100.00  E-value=1.1e-34  Score=234.26  Aligned_cols=172  Identities=22%  Similarity=0.333  Sum_probs=143.5

Q ss_pred             CccEEEEEeCCC---CCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchh---hhHHHHhcCCCCCChHHHHHH
Q 029167            7 REVVVSALQFAC---TDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQ---REDFFQRAKPYKDHPTILKMQ   80 (198)
Q Consensus         7 ~~~~ia~~Q~~~---~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~---~~~~~~~a~~~~~~~~~~~l~   80 (198)
                      ++||||++|+++   ..+.+.|++++.+++++|+++|+|||||||++++||.+...   ..++....+.....+.++.+.
T Consensus         2 ~~~~ia~~Q~~Pi~~~~~~~~~l~r~~~li~~A~~~gadlvvfPE~~l~Gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (303)
T d1uf5a_           2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLF   81 (303)
T ss_dssp             CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHH
T ss_pred             cEEEEEEEccCCcCCCcCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCCccccccchhHHhhhhhhhcCCHHHHHHH
Confidence            579999999865   36889999999999999999999999999999999976532   223333222223367889999


Q ss_pred             HHHHHhCCEEEEeeeec----cCCeeEEEEEEEcCCCCeeeeeeeccCCCCCCCC--------ccccccCCCCCeeeEEe
Q 029167           81 ELAKELGVVMPVSFFEE----ANNAHYNSIAIIDADGSDLGLYRKSHIPDGPGYQ--------EKFYFNPGDTGFKVGAW  148 (198)
Q Consensus        81 ~~a~~~~i~iv~g~~~~----~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~~--------e~~~~~~G~~~~~~~~~  148 (198)
                      ++|+++++++++|+.+.    .++++||++++|+++|++++.|+|+||++++++.        |..+|.++....++|++
T Consensus        82 ~~A~~~~i~i~~G~~~~~~~~~~~~~yNs~~li~~~G~i~~~y~K~~L~~~~e~~~~~~~~~~e~~~~~~~~~~~~~~~~  161 (303)
T d1uf5a_          82 EKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDV  161 (303)
T ss_dssp             HHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHHCCCCSSCSCEEEE
T ss_pred             HHHHhcCceEEEEeeeeeeecCCCeeEEEEEeeccccccccccccccCCCCccccccccccccccceecccCCcceeEEe
Confidence            99999999999998764    2468999999999999999999999999876553        44556777766889999


Q ss_pred             CCceEEEeeeecccCCcccccc--CCCCcccc
Q 029167          149 NNLNLNLICFFDLIFDDDFPSR--LDFPLPFL  178 (198)
Q Consensus       149 ~~~~ig~~IC~d~~~pe~~r~~--~~~~~~~~  178 (198)
                      +++|+|++||||.+|||++|.+  +||+++++
T Consensus       162 ~~~rig~~IC~D~~~pe~~~~la~~Ga~ii~~  193 (303)
T d1uf5a_         162 DAAKMGMFIANDRRWPEAWRVMGLRGAEIICG  193 (303)
T ss_dssp             TTEEEEECCGGGGGCHHHHHHHHHTTCSEEEE
T ss_pred             cCcEEEeeccccchhhHhhhhHhhCCCEEEEE
Confidence            9999999999999999999885  88998875

>d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: hypothetical protein yl85
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-34  Score=229.11  Aligned_cols=179  Identities=17%  Similarity=0.219  Sum_probs=145.8

Q ss_pred             CCCCCCccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhC--CCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHH
Q 029167            2 EKGKRREVVVSALQFAC-TDDVSTNLATAERLVRAAHGK--GANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILK   78 (198)
Q Consensus         2 ~~~~~~~~~ia~~Q~~~-~~~~~~n~~~i~~~i~~A~~~--g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~   78 (198)
                      ++-|+++||||++|+++ +.|.+.|++++++++++|.++  |+|||||||++++||.+.+.. +..........++.++.
T Consensus         3 ~~~m~~~~kia~~Q~~~~~~D~~~N~~~~~~~i~~A~~~~~~a~lvv~PE~~l~gy~~~~~~-~~~~~~~~~~~~~~~~~   81 (281)
T d1f89a_           3 SKILSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFR-KYSEVINPKEPSTSVQF   81 (281)
T ss_dssp             SSSBSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSCHHHHH-HHTTBCCSSSCCHHHHH
T ss_pred             hhhhccCceEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCEEEEcCCcccCCCchhHHH-HHHhhhcccCCCHHHHH
Confidence            56688899999999999 789999999999999999654  899999999999999876532 12222222234789999


Q ss_pred             HHHHHHHhCCEEEEeee-e--ccCCeeEEEEEEEcCCCCeeeeeeeccCCCCC-----CCCccccccCCCCCeeeEEeCC
Q 029167           79 MQELAKELGVVMPVSFF-E--EANNAHYNSIAIIDADGSDLGLYRKSHIPDGP-----GYQEKFYFNPGDTGFKVGAWNN  150 (198)
Q Consensus        79 l~~~a~~~~i~iv~g~~-~--~~~~~~yNs~~~i~~~G~il~~y~K~~l~~~~-----~~~e~~~~~~G~~~~~~~~~~~  150 (198)
                      ++++|++++++|++|+. +  +.++++||++++++++|+++..|+|++++++.     .+.|..+|.+|+. ..++++++
T Consensus        82 l~~~A~~~~i~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~~~k~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~  160 (281)
T d1f89a_          82 LSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEK-STTIDTKY  160 (281)
T ss_dssp             HHHHHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHHSCCCCCC-CEEEEETT
T ss_pred             HHHHhhhcCceeecceeeeeccccCceeeecccccccccccccccccccccccccccccccccceeeeecc-cccccccc
Confidence            99999999999999864 3  34679999999999999999999999987653     2346677888888 89999999


Q ss_pred             ceEEEeeeecccCCcccccc--CCCCcccccccc
Q 029167          151 LNLNLICFFDLIFDDDFPSR--LDFPLPFLNRFS  182 (198)
Q Consensus       151 ~~ig~~IC~d~~~pe~~r~~--~~~~~~~~~~~~  182 (198)
                      +++|++||+|.++|+.+|.+  ++++++++++|.
T Consensus       161 ~~~g~~iC~d~~~p~~~r~~~~~~~~~i~~~~~~  194 (281)
T d1f89a_         161 GKFGVGICYDMRFPELAMLSARKGAFAMIYPSAF  194 (281)
T ss_dssp             EEEEECCGGGGGCHHHHHHHHHTTEEEEEEECCC
T ss_pred             cccccccccccccccchhhhhcccccceeEeecc
Confidence            99999999999999987775  777777665443

>d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Nitrilase
domain: NIT-FHIT fusion protein, N-terminal domain
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=7.6e-34  Score=225.88  Aligned_cols=171  Identities=18%  Similarity=0.164  Sum_probs=143.1

Q ss_pred             ccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhC
Q 029167            8 EVVVSALQFACTDDVSTNLATAERLVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELG   87 (198)
Q Consensus         8 ~~~ia~~Q~~~~~~~~~n~~~i~~~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~   87 (198)
                      ++|||++|++...|+++|++++.+++++|+++|+|||||||++.+++.+..   +..+.+...+ ++.++.++++|++++
T Consensus         5 ~~rVA~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~~~~~~~~~---~~~~~a~~~~-~~~~~~l~~~a~~~~   80 (271)
T d1emsa2           5 RHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKN---EQIDLAMATD-CEYMEKYRELARKHN   80 (271)
T ss_dssp             EEEEEEECBCCCSCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSSHH---HHHHHHHHHH-HHHHHHHHHHHHHTT
T ss_pred             CeEEEEEeCCCCCCHHHHHHHHHHHHHHHHHCcCeEEECCccccccCCCHH---HHHHHHHhhc-chHHHhhhhhhhccc
Confidence            399999999998899999999999999999999999999999755444332   2333333333 578899999999999


Q ss_pred             CEEEEeeeecc----CCeeEEEEEEEcCCCCeeeeeeeccCCCCCCC-----CccccccCCCCCeeeEEeCCceEEEeee
Q 029167           88 VVMPVSFFEEA----NNAHYNSIAIIDADGSDLGLYRKSHIPDGPGY-----QEKFYFNPGDTGFKVGAWNNLNLNLICF  158 (198)
Q Consensus        88 i~iv~g~~~~~----~~~~yNs~~~i~~~G~il~~y~K~~l~~~~~~-----~e~~~~~~G~~~~~~~~~~~~~ig~~IC  158 (198)
                      +++++|+++..    ++++||++++++++|++++.|+|.||+++..+     .|..++.+|+...++|+++++++|++||
T Consensus        81 i~v~~G~~~~~~~~~~~~~yNsa~vi~~~g~i~~~~~K~~l~~~~~~~~~~~~e~~~~~~g~~~~~v~~~~~~~~g~~iC  160 (271)
T d1emsa2          81 IWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSIC  160 (271)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCCCCCSCCCCEEETTEEECCCCG
T ss_pred             ccccccceeeeeecCCCceeEEEEEEeCCceEEEeeeeecccccccccccceeccccccCCccccceeecCCcccccccc
Confidence            99999876542    46899999999999999999999999875433     3567899998767899999999999999


Q ss_pred             ecccCCcccccc--CCCCcccccccc
Q 029167          159 FDLIFDDDFPSR--LDFPLPFLNRFS  182 (198)
Q Consensus       159 ~d~~~pe~~r~~--~~~~~~~~~~~~  182 (198)
                      +|.+||+++|.+  .|+++++++++.
T Consensus       161 ~D~~~~e~~~~~~~~ga~~i~~p~a~  186 (271)
T d1emsa2         161 YDVRFPELSLWNRKRGAQLLSFPSAF  186 (271)
T ss_dssp             GGGGCHHHHHHHHHTTCSEEECCBCC
T ss_pred             ccccccHHHHHHHhhcCcEEEecccc
Confidence            999999999885  899999877544

>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: N-carbamoyl-D-aminoacid amidohydrolase
species: Agrobacterium sp. [TaxId: 361]

Probab=87.08  E-value=1.3  Score=32.79  Aligned_cols=80  Identities=18%  Similarity=0.045  Sum_probs=44.3

Q ss_pred             HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEee-eeccCC-eeEEEEEEE
Q 029167           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSF-FEEANN-AHYNSIAII  109 (198)
Q Consensus        32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~-~~~~~~-~~yNs~~~i  109 (198)
                      ..+.++.+|+++|+.|=.+.+.............       ......++..|.+++++++... ...+++ .++=.+.++
T Consensus       179 ~~~~la~~Ga~ii~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~arA~en~~~vv~~n~~g~~~~~~~~G~S~I~  251 (303)
T d1uf5a_         179 AWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTS-------FHHLLSMQAGSYQNGAWSAAAGKAGMEENCMLLGHSCIV  251 (303)
T ss_dssp             HHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHH-------HHHHHHHHHHHHHHTCEEEEEEBCEEETTEEECCCCEEE
T ss_pred             hhhhHhhCCCEEEEEeccccccCCcccccchhhc-------chhhhhhhhhhhcccceeeeccccccccccccccCcEEE
Confidence            3344567799999987655443221110000000       1122334566788999997643 333333 334456799


Q ss_pred             cCCCCeeee
Q 029167          110 DADGSDLGL  118 (198)
Q Consensus       110 ~~~G~il~~  118 (198)
                      +|+|+++..
T Consensus       252 ~p~G~vla~  260 (303)
T d1uf5a_         252 APTGEIVAL  260 (303)
T ss_dssp             CTTSCEEEE
T ss_pred             eCCCCEEEE
Confidence            999998753

>d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Carbon-nitrogen hydrolase
superfamily: Carbon-nitrogen hydrolase
family: Carbamilase
domain: Hypothetical protein PH0642
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.23  E-value=1.6  Score=31.64  Aligned_cols=66  Identities=20%  Similarity=-0.027  Sum_probs=40.9

Q ss_pred             HHHHHHhCCCcEEEeCCCCCCccCcchhhhHHHHhcCCCCCChHHHHHHHHHHHhCCEEEEeeee-ccCC-eeEEEEEEE
Q 029167           32 LVRAAHGKGANIILIQELFEGYYFCQAQREDFFQRAKPYKDHPTILKMQELAKELGVVMPVSFFE-EANN-AHYNSIAII  109 (198)
Q Consensus        32 ~i~~A~~~g~dlvv~PE~~~~g~~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~i~iv~g~~~-~~~~-~~yNs~~~i  109 (198)
                      ..+.+..+|+|+|+.|-.+...                    .....++..|.+++++++..... .+++ .++=.+.++
T Consensus       154 ~~~~~~~~ga~lil~p~~~~~~--------------------~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~i~  213 (262)
T d1j31a_         154 SARTLALKGAEIIAHPANLVMP--------------------YAPRAMPIRALENRVYTITADRVGEERGLKFIGKSLIA  213 (262)
T ss_dssp             HHHHHHHTTCSEEEEECCCCSS--------------------CHHHHHHHHHHHHTCEEEEECCCSEETTEECCCCCEEE
T ss_pred             HHHHHHHhccccccCCcccccc--------------------cchhhhhhhhhcccceEEEEecccccCCccccCCCEEE
Confidence            3455567899999998433211                    11234566789999999864332 2223 233446788


Q ss_pred             cCCCCeee
Q 029167          110 DADGSDLG  117 (198)
Q Consensus       110 ~~~G~il~  117 (198)
                      +|+|+++.
T Consensus       214 ~p~G~~l~  221 (262)
T d1j31a_         214 SPKAEVLS  221 (262)
T ss_dssp             CTTSCEEE
T ss_pred             eCCCCEEE
Confidence            89999865