Citrus Sinensis ID: 029187

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEVC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEEccccccccccEEEEEcccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEcccEEEEEEcccccccHHHHEEEEcccccccccccEEccccEEEEcccccccEccccccccccccccccccccccccccccccccccccHHHccccccHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHEEEEcEEEc
Coil and Loop (DISEMBL)
msacsstfrlpnlpnispqnhnivmPTTVFLSLrhstatnpalcklqcvgnnfdstpktieipgkiteesadceprihssggdggagdspggggggggdsgggggdgegndgeekefgpilKFEEVMKEIELkgvglpddMMEAAKTVGIRKMFLLRYLDLqgsvwplgFLMRYCFMLRdrmladpsflfkvgtevc
Flexible Loop (DISEMBL)
msacsstfrlpnlpnispqnhNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELkgvglpddmMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLfkvgtevc
Low Complexity Region (SEG)
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHssggdggagdspggggggggdsgggggdgegndgEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEVC
Disordered region (IsUnstruct)
********************HNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDS***************************************************************PILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVG****
Disordered Region (DISOPRED)
******T**LPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITE***************************************************ILKFEEVMKEIE**GVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEVC
Disordered Region (DISEMBL)
********RLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEVC
Disordered Region (DISPRO)
******TFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIH************************************KEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEVC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIEIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEVC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
15242979	433	protein reticulata-related 1 [Arabidopsi	0.446	0.203	0.818	7e-36
297812405	434	hypothetical protein ARALYDRAFT_326573 [	0.446	0.202	0.795	3e-35
255573012	419	conserved hypothetical protein [Ricinus	0.421	0.198	0.746	1e-32
225440504	443	PREDICTED: uncharacterized protein LOC10	0.431	0.191	0.729	1e-30
356566573	443	PREDICTED: uncharacterized protein LOC10	0.426	0.189	0.714	9e-30
356523205	443	PREDICTED: uncharacterized protein LOC10	0.431	0.191	0.705	9e-30
449440303	439	PREDICTED: uncharacterized protein LOC10	0.431	0.193	0.705	1e-28
359479472	409	PREDICTED: uncharacterized protein LOC10	0.421	0.202	0.746	4e-28
224103009	278	predicted protein [Populus trichocarpa]	0.355	0.251	0.842	7e-28
147802508	387	hypothetical protein VITISV_031174 [Viti	0.416	0.211	0.743	8e-28

>gi|15242979|ref|NP_197671.1| protein reticulata-related 1 [Arabidopsis thaliana] gi|13605899|gb|AAK32935.1|AF367348_1 AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|9758754|dbj|BAB09278.1| unnamed protein product [Arabidopsis thaliana] gi|19548025|gb|AAL87376.1| AT5g22790/K8E10_2 [Arabidopsis thaliana] gi|332005693|gb|AED93076.1| protein reticulata-related 1 [Arabidopsis thaliana]

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 72/88 (81%), Positives = 80/88 (90%)

Query: 109 GNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPL 168
            +  EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VGIRK+FLLRYLDLQGSVWPL
Sbjct: 137 ADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPL 196

Query: 169 GFLMRYCFMLRDRMLADPSFLFKVGTEV 196
           GFLMR C MLR+RMLADPSFLFKVGTEV
Sbjct: 197 GFLMRSCAMLRNRMLADPSFLFKVGTEV 224

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812405|ref|XP_002874086.1| hypothetical protein ARALYDRAFT_326573 [Arabidopsis lyrata subsp. lyrata] gi|297319923|gb|EFH50345.1| hypothetical protein ARALYDRAFT_326573 [Arabidopsis lyrata subsp. lyrata]

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 80/88 (90%)

Query: 109 GNDGEEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPL 168
            +  EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VG+RK+FLLRYLDLQGSVWPL
Sbjct: 138 ADKAEEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGLRKLFLLRYLDLQGSVWPL 197

Query: 169 GFLMRYCFMLRDRMLADPSFLFKVGTEV 196
           GFLMR C MLR+RMLADPSFLFKVGTE+
Sbjct: 198 GFLMRSCAMLRNRMLADPSFLFKVGTEI 225

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573012|ref|XP_002527436.1| conserved hypothetical protein [Ricinus communis] gi|223533171|gb|EEF34928.1| conserved hypothetical protein [Ricinus communis]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 76/83 (91%)

Query: 115 KEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRY 174
           KEFGPI+++E+++KE E +GV LP DM+EAAKT GIR++F+LRYLDLQGSVWPLGFLM+Y
Sbjct: 102 KEFGPIMRYEQIIKEAETRGVQLPHDMIEAAKTTGIRQLFVLRYLDLQGSVWPLGFLMKY 161

Query: 175 CFMLRDRMLADPSFLFKVGTEVC 197
           C MLR+RMLADPSFLFKVGTE+ 
Sbjct: 162 CTMLRNRMLADPSFLFKVGTEIV 184

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440504|ref|XP_002272506.1| PREDICTED: uncharacterized protein LOC100264910 [Vitis vinifera]

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 73/85 (85%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPIL FEEVM+E + +G  LP DM+ AAK+VGIRK+ LLRYLDLQGSVWPLGF M
Sbjct: 152 EEEEFGPILSFEEVMREAQARGASLPSDMLTAAKSVGIRKILLLRYLDLQGSVWPLGFAM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEVC 197
           + C MLR+RMLADPSFLFK+GTE+ 
Sbjct: 212 KSCSMLRNRMLADPSFLFKIGTEIV 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566573|ref|XP_003551505.1| PREDICTED: uncharacterized protein LOC100783806 [Glycine max]

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 60/84 (71%), Positives = 74/84 (88%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPILK++EVM+E E +G  LP DM+EAAK+VGIRK+ LLRYLDLQGS WPLGF M
Sbjct: 152 EEEEFGPILKYDEVMRETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEV 196
           + C MLR+RMLADP+FLFK+G+E+
Sbjct: 212 KSCSMLRNRMLADPAFLFKIGSEI 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523205|ref|XP_003530232.1| PREDICTED: uncharacterized protein LOC100780872 [Glycine max]

 Score =  135 bits (340), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 74/85 (87%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPILK++EVM+E E +G  LP DM+EAAK+VGIRK+ LLRYLDLQGS WPLGF M
Sbjct: 152 EEEEFGPILKYDEVMRETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFM 211

Query: 173 RYCFMLRDRMLADPSFLFKVGTEVC 197
           + C MLR+RMLADP+FLFK+G+E+ 
Sbjct: 212 KSCSMLRNRMLADPAFLFKIGSEIV 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440303|ref|XP_004137924.1| PREDICTED: uncharacterized protein LOC101202748 [Cucumis sativus] gi|449483677|ref|XP_004156657.1| PREDICTED: uncharacterized protein LOC101226426 [Cucumis sativus]

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 73/85 (85%)

Query: 113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
           EE+EFGPI+KFEEVMKE+E +GV LP DM+EAAK+ GIRK+ LLRYL++QG  WPLGFLM
Sbjct: 148 EEEEFGPIMKFEEVMKELESRGVTLPSDMLEAAKSEGIRKLLLLRYLEMQGLGWPLGFLM 207

Query: 173 RYCFMLRDRMLADPSFLFKVGTEVC 197
           R C M+R+R+LADPSF FKVG E+ 
Sbjct: 208 RSCAMIRNRVLADPSFFFKVGVELV 232

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479472|ref|XP_003632277.1| PREDICTED: uncharacterized protein LOC100854755 [Vitis vinifera]

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 70/83 (84%)

Query: 114 EKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMR 173
           E+EFG ILKFEEVM+E E +G  LP DM EAAKT GIR++ L RYLDLQGSVWPLGF M+
Sbjct: 119 EEEFGRILKFEEVMREAENRGASLPSDMWEAAKTTGIREVILFRYLDLQGSVWPLGFGMK 178

Query: 174 YCFMLRDRMLADPSFLFKVGTEV 196
           +  MLR+RMLADPSFLFKVGTEV
Sbjct: 179 HFSMLRNRMLADPSFLFKVGTEV 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103009|ref|XP_002312888.1| predicted protein [Populus trichocarpa] gi|222849296|gb|EEE86843.1| predicted protein [Populus trichocarpa]

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 65/70 (92%)

Query: 127 MKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADP 186
           MKEIE +GV LP DMMEAAK++GIRKMFLLRYLDLQGS WPLGFLM+YC MLR+RMLADP
Sbjct: 1   MKEIEARGVELPADMMEAAKSIGIRKMFLLRYLDLQGSAWPLGFLMKYCTMLRNRMLADP 60

Query: 187 SFLFKVGTEV 196
           SFLFKVGTE+
Sbjct: 61  SFLFKVGTEI 70

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802508|emb|CAN73121.1| hypothetical protein VITISV_031174 [Vitis vinifera]

 Score =  129 bits (323), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 69/82 (84%)

Query: 114 EKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMR 173
           E+EFG ILKFEEVM+E E +G  LP DM EAAKT GIR++ L RYLDLQGSVWPLGF M+
Sbjct: 122 EEEFGRILKFEEVMREAENRGASLPSDMWEAAKTTGIREVILFRYLDLQGSVWPLGFGMK 181

Query: 174 YCFMLRDRMLADPSFLFKVGTE 195
           +  MLR+RMLADPSFLFKVGTE
Sbjct: 182 HFSMLRNRMLADPSFLFKVGTE 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2158155	433	RER1 "AT5G22790" [Arabidopsis	0.426	0.193	0.857	1.1e-34
TAIR|locus:2065649	432	LCD1 "AT2G37860" [Arabidopsis	0.426	0.194	0.714	1.5e-26

TAIR|locus:2158155 RER1 "AT5G22790" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 72/84 (85%), Positives = 79/84 (94%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VGIRK+FLLRYLDLQGSVWPLGFLM
Sbjct:   141 EEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLM 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTEV 196
             R C MLR+RMLADPSFLFKVGTEV
Sbjct:   201 RSCAMLRNRMLADPSFLFKVGTEV 224

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2065649 LCD1 "AT2G37860" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 60/84 (71%), Positives = 67/84 (79%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G  LP DM+EAAK  GIRK+ LLRYLDLQ S   LGF +
Sbjct:   141 EEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAI 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTEV 196
             R   MLR+RMLADPSFLFK+G E+
Sbjct:   201 RSWAMLRNRMLADPSFLFKIGAEI 224


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      197       163   0.00084  107 3  11 22  0.48    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  150 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.57u 0.13s 14.70t   Elapsed:  00:00:01
  Total cpu time:  14.57u 0.13s 14.70t   Elapsed:  00:00:01
  Start:  Fri May 10 09:24:31 2013   End:  Fri May 10 09:24:32 2013

GO:0003674 "molecular_function" evidence=ND

GO:0048366 "leaf development" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
PRK05325	401	PRK05325, PRK05325, hypothetical protein; Provisio	3e-06
PLN03138	796	PLN03138, PLN03138, Protein TOC75; Provisional	7e-06
COG1512	271	COG1512, COG1512, Beta-propeller domains of methan	3e-04
PHA00370	297	PHA00370, III, attachment protein	8e-04
COG2718	423	COG2718, COG2718, Uncharacterized conserved protei	0.002
pfam11891	179	pfam11891, DUF3411, Domain of unknown function (DU	0.002
PLN03184	673	PLN03184, PLN03184, chloroplast Hsp70; Provisional	0.002
PRK06958	182	PRK06958, PRK06958, single-stranded DNA-binding pr	0.002
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.003
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.004
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.004

>gnl|CDD|235409 PRK05325, PRK05325, hypothetical protein; Provisional

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 12/79 (15%)

Query: 58  KTIEIPGKITEE------SADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGND 111
           + + IP +  +E             +    G+   GD  G   GGGG  G GGGDGEG D
Sbjct: 37  EVVSIPIRDIDEPKFRYGRGGKREGVGPGNGEFVVGDRIGRPQGGGGGGGQGGGDGEGED 96

Query: 112 GEE-----KEFGPILKFEE 125
             E     +E   +L FE+
Sbjct: 97  YFEFEISLEELLDLL-FED 114

Length = 401

>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 23/112 (20%), Positives = 36/112 (32%), Gaps = 11/112 (9%)

Query: 2   SACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTIE 61
           S   S     +L +  PQ  +         S + +T +  A      +  +  ++  +  
Sbjct: 5   STMVSAAASTSLSSSRPQLSSFSS-----RSPQSATRSPRA----SSIKCSASASASSSA 55

Query: 62  IPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGE 113
                +  +         S      G   GGGG GG   GGGGG G G    
Sbjct: 56  TSSSASLVAN--GAVALLSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGWR 105

Length = 796

>gnl|CDD|224429 COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 16/33 (48%), Positives = 16/33 (48%)

Query: 75  PRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDG 107
                  G  G G S GG  GGGG SGGGG  G
Sbjct: 237 SSGSGGSGGSGGGSSGGGFSGGGGSSGGGGASG 269

Length = 271

>gnl|CDD|164795 PHA00370, III, attachment protein

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 80  SGGDGGAGDSPGG-GGGGGGDSGGGGGDGEGNDGEEKEFG 118
           +GGD G G++ GG GGG  G SGGGG DG G++G      
Sbjct: 96  TGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKS 135

Length = 297

>gnl|CDD|225339 COG2718, COG2718, Uncharacterized conserved protein [Function unknown]

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 76  RIHSSGGDGGAGD---SPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPILKFEEVMKEIEL 132
            +     +   GD    P GGGGGG   G   GDGEG D    EF   +  EEV+ ++  
Sbjct: 74  HVGPGNDEFAVGDRIERPQGGGGGGSGKGQAAGDGEGED----EFVFQISREEVL-DLLF 128

Query: 133 KGVGLPD 139
           + + LP+
Sbjct: 129 EDLELPN 135

Length = 423

>gnl|CDD|221294 pfam11891, DUF3411, Domain of unknown function (DUF3411)

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 11/17 (64%), Positives = 14/17 (82%)

Query: 180 DRMLADPSFLFKVGTEV 196
           +R+LADPSFLFK+  E 
Sbjct: 1   ERLLADPSFLFKLAMEE 17

This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif. Length = 179

>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 77  IHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGE 113
           +++  G GGAG +PGG  G    S  GG   +  D +
Sbjct: 634 LYNQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDAD 670

Length = 673

>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 19/34 (55%), Positives = 20/34 (58%)

Query: 79  SSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDG 112
            SGG GG GD  G GGGGGG  GG GG+     G
Sbjct: 113 GSGGGGGGGDEGGYGGGGGGGGGGYGGESRSGGG 146

Length = 182

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 17/32 (53%), Positives = 17/32 (53%)

Query: 81  GGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDG 112
           G  GG G   GGGGGGG   GG GG   G  G
Sbjct: 5   GFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRG 36

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 15/29 (51%), Positives = 15/29 (51%)

Query: 81  GGDGGAGDSPGGGGGGGGDSGGGGGDGEG 109
           GG GG      G G GGG  G GGG G G
Sbjct: 25  GGRGGGRGGGRGRGRGGGGGGRGGGGGGG 53

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 18/32 (56%), Positives = 18/32 (56%)

Query: 81  GGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDG 112
           GG GG G    GGGG GG  GGG G G G  G
Sbjct: 12  GGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGG 43

Length = 293

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
PLN03138	796	Protein TOC75; Provisional	95.08
COG4907	595	Predicted membrane protein [Function unknown]	88.96
TIGR02877	371	spore_yhbH sporulation protein YhbH. This protein	87.98
PRK05325	401	hypothetical protein; Provisional	87.87
PF04285	421	DUF444: Protein of unknown function (DUF444); Inte	86.28
PLN03138	796	Protein TOC75; Provisional	80.66
PHA00370	297	III attachment protein	80.42

>PLN03138 Protein TOC75; Provisional

Probab=95.08  E-value=0.058  Score=54.80  Aligned_cols=19  Identities=26%  Similarity=0.183  Sum_probs=13.6

Q ss_pred             CcccccccCCCCCCCCCCC
Q 029187            2 SACSSTFRLPNLPNISPQN   20 (197)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~   20 (197)
                      ++|.+.++-+.++...+|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~   23 (796)
T PLN03138          5 STMVSAAASTSLSSSRPQL   23 (796)
T ss_pred             cccceeccCCCccCCCccc
Confidence            5777777777777766664

>COG4907 Predicted membrane protein [Function unknown]

Probab=88.96  E-value=0.34  Score=47.58  Aligned_cols=10  Identities=0%  Similarity=-0.104  Sum_probs=5.7

Q ss_pred             eeeecccccC
Q 029187           30 FLSLRHSTAT   39 (197)
Q Consensus        30 ~~~l~hs~~~   39 (197)
                      |...||+.+|
T Consensus       546 ~~i~h~nysr  555 (595)
T COG4907         546 SPIFHNNYSR  555 (595)
T ss_pred             eeEEecchhh
Confidence            4445666664

>TIGR02877 spore_yhbH sporulation protein YhbH

Probab=87.98  E-value=1.6  Score=41.25  Aligned_cols=31  Identities=35%  Similarity=0.468  Sum_probs=18.3

Q ss_pred             CCCCCCCCCCccccccCcccHHHHHHHHHHhCCCCc
Q 029187          103 GGGDGEGNDGEEKEFGPILKFEEVMKEIELKGVGLP  138 (197)
Q Consensus       103 g~g~g~~dd~~e~efG~il~~eeVLaEa~Rrg~SLP  138 (197)
                      |.|+|+++|+-+    --++.||.+.....-+ .||
T Consensus       100 gag~geGed~fe----~e~s~eE~~~~lfEdL-eLP  130 (371)
T TIGR02877       100 GAGDQEGEDYYE----TEVTLEELFELLFEDL-ELP  130 (371)
T ss_pred             CCCCCCCcceEE----EEecHHHHHHHHHhhc-cCC
Confidence            344455555433    4478888888777654 355

This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.

>PRK05325 hypothetical protein; Provisional

Probab=87.87  E-value=1.5  Score=41.71  Aligned_cols=15  Identities=13%  Similarity=0.102  Sum_probs=10.0

Q ss_pred             CcccHHHHHHHHHHh
Q 029187          119 PILKFEEVMKEIELK  133 (197)
Q Consensus       119 ~il~~eeVLaEa~Rr  133 (197)
                      --++.||.+......
T Consensus       100 ~els~eE~~~~lfEd  114 (401)
T PRK05325        100 FEISLEELLDLLFED  114 (401)
T ss_pred             EEecHHHHHHHHHhh
Confidence            446777777776654

>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56

Probab=86.28  E-value=1.9  Score=41.22  Aligned_cols=26  Identities=42%  Similarity=0.500  Sum_probs=13.5

Q ss_pred             CCCCCCCCCCccccccCcccHHHHHHHHHH
Q 029187          103 GGGDGEGNDGEEKEFGPILKFEEVMKEIEL  132 (197)
Q Consensus       103 g~g~g~~dd~~e~efG~il~~eeVLaEa~R  132 (197)
                      |.|+++|+|+-+    --++.||++.....
T Consensus       104 gag~geGeD~fe----~els~eE~~~llfE  129 (421)
T PF04285_consen  104 GAGDGEGEDDFE----FELSREEFLDLLFE  129 (421)
T ss_pred             CCCCCCCCCeEE----EEEEHHHHHHHhHH
Confidence            445555555433    34566666655554

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].

>PLN03138 Protein TOC75; Provisional

Probab=80.66  E-value=1.5  Score=44.96  Aligned_cols=7  Identities=14%  Similarity=0.311  Sum_probs=2.6

Q ss_pred             HHHHHhh
Q 029187          155 LLRYLDL  161 (197)
Q Consensus       155 L~Ryl~L  161 (197)
                      |..+++.
T Consensus       257 l~~~~~~  263 (796)
T PLN03138        257 KMEYYRS  263 (796)
T ss_pred             HHHHhhc
Confidence            3333333

>PHA00370 III attachment protein

Probab=80.42  E-value=2.8  Score=38.52  Aligned_cols=19  Identities=21%  Similarity=0.046  Sum_probs=9.3

Q ss_pred             HHHHHHHhhhcCcchHHHHH
Q 029187          153 MFLLRYLDLQGSVWPLGFLM  172 (197)
Q Consensus       153 a~L~Ryl~L~asp~~l~~L~  172 (197)
                      ++|...=+=+.+|| +.+|.
T Consensus       213 s~md~lg~g~gS~~-~~~l~  231 (297)
T PHA00370        213 SEMDQLGEGDGSPL-ESFLN  231 (297)
T ss_pred             hhhhhhcccCCcHH-HHhhc
Confidence            44443334455566 45554

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00