Citrus Sinensis ID: 029213

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
Protein Sequence
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATPQTYQANPTVPTSGNLNAQAPEMNH
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccEEEccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mpryycdycdtylthdspsvrkqhnagykhkANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQVGAAYNQHLlaqrprlpvlptpvmpmtgsaplvpgmrppvlprpgpsppgyvsapgmppmmappgapsapgqlngfprppavmnptavsgsaappasssgapsmatpqtyqanptvptsgnlnaqapemnh
Flexible Loop (DISEMBL)
MPRYYCDYCDtylthdspsvrKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATPQTYQANPTVPTSgnlnaqapemnh
Low Complexity Region (SEG)
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMTGSAplvpgmrppvlprpgpsppGYVsapgmppmmappgapsapgQLNGFPRPPAVMNptavsgsaappasssgapsmatpQTYQANPTVPTSGNLNAQAPEMNH
Disordered region (IsUnstruct)
***YYCDYCDTYLTHD***********Y**KANVRSYYQQF*******LIDQRIKEHLGQTAAFQQVGAAYNQHLLAQRPRL*V*****************************************************************************************************************
Disordered Region (DISOPRED)
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLI***************************************************************************************************************************************************
Disordered Region (DISEMBL)
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRPPAVMNPT*********************QTYQANPTVPTSGNLNAQAPEMNH
Disordered Region (DISPRO)
*PRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATPQT*QAN******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATPQTYQANPTVPTSGNLNAQAPEMNH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	197	2.2.26 [Sep-21-2011]
F6HQ26	213	U1 small nuclear ribonucl	yes	no	0.994	0.920	0.742	7e-64
Q56XE4	207	U1 small nuclear ribonucl	yes	no	0.710	0.676	0.709	2e-46
C5XYW4	228	U1 small nuclear ribonucl	N/A	no	0.903	0.780	0.596	4e-43
C5XZK6	231	U1 small nuclear ribonucl	N/A	no	0.913	0.779	0.556	2e-39
A7SEP9	138	U1 small nuclear ribonucl	N/A	no	0.294	0.420	0.676	2e-19
Q8JGS0	159	U1 small nuclear ribonucl	yes	no	0.299	0.371	0.651	2e-19
B0JYS7	159	U1 small nuclear ribonucl	yes	no	0.299	0.371	0.651	2e-19
Q03369	159	U1 small nuclear ribonucl	N/A	no	0.299	0.371	0.651	2e-19
F6TFD9	159	U1 small nuclear ribonucl	no	no	0.299	0.371	0.651	2e-19
P09234	159	U1 small nuclear ribonucl	yes	no	0.299	0.371	0.651	2e-19

>sp|F6HQ26|RU1C_VITVI U1 small nuclear ribonucleoprotein C OS=Vitis vinifera GN=VIT_07s0104g01170 PE=3 SV=1

 Score =  243 bits (620), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 159/214 (74%), Positives = 167/214 (78%), Gaps = 18/214 (8%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  TAAFQQVGAAYNQHLLA-----QRPRLPVLPTPVMPMTGSA------PLVPGMRPPVLPR 109
           TAAFQQVGAAYNQHL++      RPRLPVLPTP MP+ GSA      PLVPGMRPPVLPR
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

Query: 110 PGPSPPGYVSAPGMPPMMAPPGAPSAPG-QLNGFPRPPAVMNPTAVSGSAAPPASSSGAP 168
           P P  PGY+ APGMP MMAPPGAPS P   LN  PRPP +  P AV GS + P +S GAP
Sbjct: 121 PVPGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLPRPPTMNVPPAVPGSTSTP-TSGGAP 179

Query: 169 SMATPQTYQANPTVPTSG-----NLNAQAPEMNH 197
           SM T   YQANP  PTSG     N+NAQ PE NH
Sbjct: 180 SMMTQPMYQANPAGPTSGGFDSFNINAQGPEANH 213

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
Vitis vinifera (taxid: 29760)

>sp|Q56XE4|RU1C_ARATH U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana GN=At4g03120 PE=1 SV=1

 Score =  185 bits (470), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/148 (70%), Positives = 113/148 (76%), Gaps = 8/148 (5%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  TAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSA 120
           T  +QQVGA +NQH+LA+     +LP   MPM        GMRPPVLPRP   P GY+  
Sbjct: 61  TGGYQQVGAVFNQHMLARPRPPMMLPPGSMPM--------GMRPPVLPRPMMPPQGYMPP 112

Query: 121 PGMPPMMAPPGAPSAPGQLNGFPRPPAV 148
           PG+P MMAPPGAP  P   NG  RPP +
Sbjct: 113 PGVPQMMAPPGAPLPPPPQNGILRPPGM 140

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Arabidopsis thaliana (taxid: 3702)

>sp|C5XYW4|RU1C2_SORBI U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor GN=Sb04g028260 PE=3 SV=1

 Score =  174 bits (440), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 127/213 (59%), Positives = 136/213 (63%), Gaps = 35/213 (16%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHL-G 59

Query: 61  TAAFQQVGAAYNQHLLA-----QRPRLPVLPTPVMPMTG-SAPLVPGMRPPVLPRPGPSP 114
            AA  Q GA +NQH+LA      RPRLP+LPTP MP     APL+PG+RPP+LP PG   
Sbjct: 60  QAAAFQAGAPFNQHMLAFPGAVARPRLPILPTPGMPHGFPQAPLMPGVRPPILPAPG--V 117

Query: 115 PGYVSAPGMPPMMAPPGAPSAPGQLNGFPRPPAVM-NPTAVSGS-----------AAPPA 162
           PGY   PG PP M  PGAP  PG +     PP  M  P A  GS              P 
Sbjct: 118 PGY---PGAPPTMPQPGAP--PGSMPQPGAPPGSMPQPGAPPGSMPMQMAPLPRPPTLPP 172

Query: 163 SSSGAP------SMATPQTYQANPTV---PTSG 186
            +SG P      S A P  YQANP     PTSG
Sbjct: 173 PTSGVPGAPIPNSAAPPAIYQANPPAPAGPTSG 205

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Sorghum bicolor (taxid: 4558)

>sp|C5XZK6|RU1C1_SORBI U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor GN=Sb04g009880 PE=3 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 119/214 (55%), Positives = 131/214 (61%), Gaps = 34/214 (15%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHL  
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHL-G 59

Query: 61  TAAFQQVGAAYNQHLL-----AQRPRLPVLPTPVM----PMTGSAPLVPGMRPPVLP--- 108
            AA  Q GA +NQH+L       RPRLP+LPTP M    P    APL+PG+RPP+LP   
Sbjct: 60  QAAAFQAGAPFNQHMLTFPGAVARPRLPILPTPGMPHGFPQAPGAPLMPGVRPPILPAPG 119

Query: 109 ------------RPGPSPPGYVSAPGMPPMMAP-PGAPSAPGQLNGFPRPPAVMNPTAVS 155
                       +PG +PPG +  PG PP   P PGAP     +   P P     P   S
Sbjct: 120 IPGYPGGPPTMLQPG-APPGSMPQPGAPPGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTS 178

Query: 156 GSAAPPASSSGAPSMATPQTYQANPTV---PTSG 186
           G    P  +S AP    P  YQ NP     PTSG
Sbjct: 179 GVPGAPIPNSAAP----PAIYQTNPPAPAGPTSG 208

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Sorghum bicolor (taxid: 4558)

>sp|A7SEP9|RU1C_NEMVE U1 small nuclear ribonucleoprotein C OS=Nematostella vectensis GN=v1g244745 PE=3 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/65 (67%), Positives = 50/65 (76%), Gaps = 7/65 (10%)

Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
          MP+YYCDYCDT+LTHDSPSVRK HN G KHK NVR YYQ++ E+Q Q+LIDQ        
Sbjct: 1  MPKYYCDYCDTFLTHDSPSVRKTHNNGRKHKENVRFYYQKWMEEQAQTLIDQ-------T 53

Query: 61 TAAFQ 65
          TAAFQ
Sbjct: 54 TAAFQ 58

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Nematostella vectensis (taxid: 45351)

>sp|Q8JGS0|RU1C_DANRE U1 small nuclear ribonucleoprotein C OS=Danio rerio GN=snrpc PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)

Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
          MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53

Query: 61 TAAFQQ 66
          TAAFQQ
Sbjct: 54 TAAFQQ 59

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region (By similarity). Regulates alternative splicing of a distinct group of target genes. Essential for early embryonic development.

Danio rerio (taxid: 7955)

>sp|B0JYS7|RU1C_XENTR U1 small nuclear ribonucleoprotein C OS=Xenopus tropicalis GN=snrpc PE=2 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)

Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
          MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53

Query: 61 TAAFQQ 66
          TAAFQQ
Sbjct: 54 TAAFQQ 59

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Xenopus tropicalis (taxid: 8364)

>sp|Q03369|RU1C_XENLA U1 small nuclear ribonucleoprotein C OS=Xenopus laevis GN=snrpc PE=2 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)

Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
          MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53

Query: 61 TAAFQQ 66
          TAAFQQ
Sbjct: 54 TAAFQQ 59

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Xenopus laevis (taxid: 8355)

>sp|F6TFD9|RU1C_MACMU U1 small nuclear ribonucleoprotein C OS=Macaca mulatta GN=SNRPC PE=3 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)

Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
          MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53

Query: 61 TAAFQQ 66
          TAAFQQ
Sbjct: 54 TAAFQQ 59

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Macaca mulatta (taxid: 9544)

>sp|P09234|RU1C_HUMAN U1 small nuclear ribonucleoprotein C OS=Homo sapiens GN=SNRPC PE=1 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)

Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
          MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53

Query: 61 TAAFQQ 66
          TAAFQQ
Sbjct: 54 TAAFQQ 59

Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates E complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
224073782	202	predicted protein [Populus trichocarpa]	0.994	0.970	0.763	7e-64
225436815	213	PREDICTED: uncharacterized protein LOC10	0.994	0.920	0.742	3e-62
255559356	206	U1 small nuclear ribonucleoprotein C, pu	0.954	0.912	0.756	8e-61
449462314	197	PREDICTED: U1 small nuclear ribonucleopr	0.928	0.928	0.706	3e-58
356535539	206	PREDICTED: uncharacterized protein LOC10	0.984	0.941	0.684	4e-55
388496966	192	unknown [Lotus japonicus]	0.893	0.916	0.596	8e-54
294460061	244	unknown [Picea sitchensis]	0.832	0.672	0.627	5e-53
356502842	206	PREDICTED: uncharacterized protein LOC10	0.984	0.941	0.708	2e-52
346467509	254	hypothetical protein [Amblyomma maculatu	0.705	0.547	0.715	4e-52
296086639	190	unnamed protein product [Vitis vinifera]	0.751	0.778	0.806	4e-51

>gi|224073782|ref|XP_002304170.1| predicted protein [Populus trichocarpa] gi|222841602|gb|EEE79149.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 155/203 (76%), Positives = 166/203 (81%), Gaps = 7/203 (3%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQS+IDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSIIDQRIKEHLGQ 60

Query: 61  TAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMTG-SAPLVPGMRPPVLPRPGPSPPGYVS 119
           TAAFQQVGAAYNQHL+ QRPRLPVLPTPVMP+ G +APL PGMRPPVLPRP P  PGY++
Sbjct: 61  TAAFQQVGAAYNQHLMVQRPRLPVLPTPVMPIGGNNAPLFPGMRPPVLPRPMPGAPGYMN 120

Query: 120 APGMPPMMAPPGAPSAPGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATPQTYQAN 179
            P MPPMMAPPGAPS PGQ+NG PRPP ++    V GS A P + SG PSM  P TYQAN
Sbjct: 121 PPMMPPMMAPPGAPSLPGQMNGIPRPPTMIAQPNVPGSTAAP-TPSGPPSMGPPVTYQAN 179

Query: 180 PTVPTSG-----NLNAQAPEMNH 197
               TSG     N+NA APE NH
Sbjct: 180 QAATTSGGFDSFNVNAAAPEANH 202

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436815|ref|XP_002270246.1| PREDICTED: uncharacterized protein LOC100263028 [Vitis vinifera] gi|363805533|sp|F6HQ26.1|RU1C_VITVI RecName: Full=U1 small nuclear ribonucleoprotein C; Short=U1 snRNP C; Short=U1-C; Short=U1C

 Score =  243 bits (620), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 159/214 (74%), Positives = 167/214 (78%), Gaps = 18/214 (8%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  TAAFQQVGAAYNQHLLA-----QRPRLPVLPTPVMPMTGSA------PLVPGMRPPVLPR 109
           TAAFQQVGAAYNQHL++      RPRLPVLPTP MP+ GSA      PLVPGMRPPVLPR
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

Query: 110 PGPSPPGYVSAPGMPPMMAPPGAPSAPG-QLNGFPRPPAVMNPTAVSGSAAPPASSSGAP 168
           P P  PGY+ APGMP MMAPPGAPS P   LN  PRPP +  P AV GS + P +S GAP
Sbjct: 121 PVPGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLPRPPTMNVPPAVPGSTSTP-TSGGAP 179

Query: 169 SMATPQTYQANPTVPTSG-----NLNAQAPEMNH 197
           SM T   YQANP  PTSG     N+NAQ PE NH
Sbjct: 180 SMMTQPMYQANPAGPTSGGFDSFNINAQGPEANH 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559356|ref|XP_002520698.1| U1 small nuclear ribonucleoprotein C, putative [Ricinus communis] gi|223540083|gb|EEF41660.1| U1 small nuclear ribonucleoprotein C, putative [Ricinus communis]

 Score =  238 bits (608), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 149/197 (75%), Positives = 162/197 (82%), Gaps = 9/197 (4%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  TAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMTGSA------PLVPGM-RPPVLPRPGPS 113
            AAFQQVGAAYNQHLL QRPRLPVLPTP+MP+ GSA      PL+PG+  PPVLPRP P+
Sbjct: 61  AAAFQQVGAAYNQHLL-QRPRLPVLPTPMMPIPGSAQLPANTPLMPGIRPPPVLPRPVPA 119

Query: 114 PPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATP 173
            PGY+S+P MPPM+APPGAPS PGQ+NG PRPP  + P  V GSAA  A  SGAPSM  P
Sbjct: 120 APGYMSSPAMPPMVAPPGAPSLPGQVNGLPRPPMSIPPATVPGSAA-VAPPSGAPSMVPP 178

Query: 174 QTYQANPTVPTSGNLNA 190
            +YQ NP  PTS   ++
Sbjct: 179 ASYQTNPAPPTSAGFDS 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462314|ref|XP_004148886.1| PREDICTED: U1 small nuclear ribonucleoprotein C-like [Cucumis sativus] gi|449491514|ref|XP_004158922.1| PREDICTED: U1 small nuclear ribonucleoprotein C-like [Cucumis sativus]

 Score =  229 bits (585), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 135/191 (70%), Positives = 148/191 (77%), Gaps = 8/191 (4%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  TAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMTGSAP-LVPGMRPPVLPRPGPSPPGYVS 119
            AAFQQVGAA+NQHLL QRPRLPVLPTPVMP  G+AP L+PG+RPPVLPRP P  PGY+ 
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMP--GAAPGLMPGIRPPVLPRPIPGAPGYLP 118

Query: 120 APGMPPMMAPPGAPSAPGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATPQTYQAN 179
            P   P M  P     PGQ+N    P     P  + GSA  P+S++GAP +A P TYQAN
Sbjct: 119 TP-TMPPMMAPPGAPIPGQVN---IPSRPPPPAPLPGSAPQPSSTNGAP-LAAPSTYQAN 173

Query: 180 PTVPTSGNLNA 190
           P  P SG  ++
Sbjct: 174 PAAPGSGGYDS 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535539|ref|XP_003536302.1| PREDICTED: uncharacterized protein LOC100790892 [Glycine max]

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 143/209 (68%), Positives = 154/209 (73%), Gaps = 15/209 (7%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  TAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMT-------GSAPLVPGMRPPVLPRPGPS 113
            AAFQQVG AYN HL+ QRP LP +  P            G  PL+ GMRPPV PRP P 
Sbjct: 61  AAAFQQVGVAYN-HLMVQRPNLPPVLPPPRLPIPGNAQIPGGQPLMQGMRPPVFPRP-PG 118

Query: 114 PPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATP 173
            PGYVSA  MPPM+ PPGAP  PGQLN  PRPP++  P  V GS A PA S+GAPSM + 
Sbjct: 119 APGYVSAHTMPPMLPPPGAPQVPGQLNTIPRPPSLAPPPTVPGSTATPA-SNGAPSMVSS 177

Query: 174 QTYQANPTVPTSG-----NLNAQAPEMNH 197
             YQANP  P+SG     N +AQAPE NH
Sbjct: 178 AMYQANPPAPSSGSYDNYNTSAQAPEGNH 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496966|gb|AFK36549.1| unknown [Lotus japonicus]

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 127/213 (59%), Positives = 141/213 (66%), Gaps = 37/213 (17%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHN+GYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNSGYKHKANVRNYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  TAAFQQVGAAYNQHLLA-----------QRPRLPVLPTPVMPMTGSAPLVPGMRPPVLPR 109
            AAFQQVG AYN HL+             +PR P+     MP  G  PL+PGMR P++P 
Sbjct: 61  AAAFQQVGVAYN-HLMVPRPGGPPLLPMPQPRFPMPGNVQMP--GGQPLMPGMR-PLMPL 116

Query: 110 PGPSPPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPS 169
           P P                 PGAP  PGQLN  PRPP+   PT   GS A PA S+GAPS
Sbjct: 117 PRPV----------------PGAPHVPGQLNAIPRPPSFAPPTTAPGSTAAPA-SNGAPS 159

Query: 170 MATPQTYQANPTVPTSG-----NLNAQAPEMNH 197
           M +   YQ NP+ P+SG     N NAQAP+ NH
Sbjct: 160 MVSSAMYQPNPSAPSSGGYDNYNANAQAPDGNH 192

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294460061|gb|ADE75613.1| unknown [Picea sitchensis]

 Score =  212 bits (540), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 113/180 (62%), Positives = 131/180 (72%), Gaps = 16/180 (8%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQR+KEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRAYYQQFEEQQTQSLIDQRVKEHLGQ 60

Query: 61  TAAF-QQVGAAYNQHLLA-----QRPRLPVLPTPVMPMTGSAPL------VPGMRPPVLP 108
           TAAF QQVGAA+ QHL +     QRPR+P+LP P +P+ GS  L      +P +RPP+L 
Sbjct: 61  TAAFQQQVGAAFQQHLASMQAGQQRPRIPMLPPPTLPVPGSTQLPNGLSMLPTLRPPILT 120

Query: 109 RPGPSPPGYVSAPGMPPMMAPPGA----PSAPGQLNGFPRPPAVMNPTAVSGSAAPPASS 164
           RP   PPGY  + G  PM+ PPGA    P    Q NG+PRPP +  P +   +A+   SS
Sbjct: 121 RPTLIPPGYGVSVGTSPMIRPPGAAVTSPPGVAQSNGWPRPPTLTPPVSTGVTASTATSS 180

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502842|ref|XP_003520224.1| PREDICTED: uncharacterized protein LOC100795821 [Glycine max]

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 148/209 (70%), Positives = 159/209 (76%), Gaps = 15/209 (7%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  TAAFQQVGAAYNQHLLAQRPRLPVLPTPVMPMT-------GSAPLVPGMRPPVLPRPGPS 113
            AAFQQVG AYN HL+ QRP LP +  P            GS PL+PGMRPPV PRP P 
Sbjct: 61  AAAFQQVGVAYN-HLMVQRPNLPPVLPPPRLPIPGNAQIPGSQPLMPGMRPPVFPRP-PG 118

Query: 114 PPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATP 173
            PGYVSAP MPPM+ PPGAP APGQLN  PRPP++  P AV GS A PA S+GAPSM + 
Sbjct: 119 APGYVSAPTMPPMLPPPGAPQAPGQLNTIPRPPSLAPPPAVPGSTAAPA-SNGAPSMVSS 177

Query: 174 QTYQANPTVPTSG-----NLNAQAPEMNH 197
             YQANP  P+SG     N +AQAPE NH
Sbjct: 178 AMYQANPPAPSSGSYDNYNASAQAPEGNH 206

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346467509|gb|AEO33599.1| hypothetical protein [Amblyomma maculatum]

 Score =  209 bits (532), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 108/151 (71%), Positives = 118/151 (78%), Gaps = 12/151 (7%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 63  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 122

Query: 61  TAAFQQVGAAYNQHLLA-----QRPRLPVLPTPVMPMTGSAP------LVPGMRPPVLPR 109
            AAF QVGA +NQHL++     QRPRLP+L  P+ PM G++P      L+PGMRPPVLP 
Sbjct: 123 AAAFHQVGATFNQHLMSLQGNPQRPRLPILAPPIFPM-GASPQGPIPSLLPGMRPPVLPV 181

Query: 110 PGPSPPGYVSAPGMPPMMAPPGAPSAPGQLN 140
           P    PGY + P  PP M PP A S P Q+N
Sbjct: 182 PMAGVPGYGAPPNAPPSMLPPVATSMPMQMN 212

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|296086639|emb|CBI32274.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (524), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 129/160 (80%), Positives = 134/160 (83%), Gaps = 12/160 (7%)

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  TAAFQQVGAAYNQHLLA-----QRPRLPVLPTPVMPMTGSA------PLVPGMRPPVLPR 109
           TAAFQQVGAAYNQHL++      RPRLPVLPTP MP+ GSA      PLVPGMRPPVLPR
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

Query: 110 PGPSPPGYVSAPGMPPMMAPPGAPSAPG-QLNGFPRPPAV 148
           P P  PGY+ APGMP MMAPPGAPS P   LN  PRPP +
Sbjct: 121 PVPGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLPRPPTM 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	197
TAIR|locus:2125432	207	AT4G03120 [Arabidopsis thalian	0.461	0.439	0.849	6.7e-43
UNIPROTKB|J9P5W0	160	SNRPC "U1 small nuclear ribonu	0.406	0.5	0.545	3.1e-19
FB|FBgn0261792	145	snRNP-U1-C "small ribonucleopr	0.258	0.351	0.705	3.9e-19
UNIPROTKB|Q32PA0	159	SNRPC "U1 small nuclear ribonu	0.406	0.503	0.545	5.1e-19
UNIPROTKB|E2RGI3	159	SNRPC "U1 small nuclear ribonu	0.406	0.503	0.545	5.1e-19
UNIPROTKB|K9J6N9	127	K9J6N9 "Uncharacterized protei	0.406	0.629	0.545	5.1e-19
UNIPROTKB|P09234	159	SNRPC "U1 small nuclear ribonu	0.406	0.503	0.545	5.1e-19
UNIPROTKB|F1RZ16	159	SNRPC "Uncharacterized protein	0.406	0.503	0.545	5.1e-19
MGI|MGI:109489	159	Snrpc "U1 small nuclear ribonu	0.406	0.503	0.545	5.1e-19
RGD|1306065	159	Snrpc "small nuclear ribonucle	0.406	0.503	0.545	5.1e-19

TAIR|locus:2125432 AT4G03120 [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 79/93 (84%), Positives = 83/93 (89%)

Query:     1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
             MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct:     1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query:    61 TAAFQQVGAAYNQHLLAQRPRLPV-LPTPVMPM 92
             T  +QQVGA +NQH+LA RPR P+ LP   MPM
Sbjct:    61 TGGYQQVGAVFNQHMLA-RPRPPMMLPPGSMPM 92

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9P5W0 SNRPC "U1 small nuclear ribonucleoprotein C" [Canis lupus familiaris (taxid:9615)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 48/88 (54%), Positives = 58/88 (65%)

Query:     1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
             MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKT------- 53

Query:    61 TAAFQQVGAAYNQHLLAQRPRLPVLPTP 88
             TAAFQQ G        A  P   ++P P
Sbjct:    54 TAAFQQ-GTIPPTPFSAPPPEGAMIPPP 80

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005685 "U1 snRNP" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

FB|FBgn0261792 snRNP-U1-C "small ribonucleoprotein particle U1 subunit C" [Drosophila melanogaster (taxid:7227)]

 Score = 209 (78.6 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 36/51 (70%), Positives = 42/51 (82%)

Query:     1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLID 51
             MP+YYCDYCDTYLTHDSPSVRK H  G KH+ NV+ YYQ++ E+Q Q LID
Sbjct:     1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLID 51

GO:0030532 "small nuclear ribonucleoprotein complex" evidence=IDA

GO:0005634 "nucleus" evidence=IC;IDA

GO:0003729 "mRNA binding" evidence=ISS

GO:0005692 "U11 snRNP" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0005685 "U1 snRNP" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q32PA0 SNRPC "U1 small nuclear ribonucleoprotein C" [Bos taurus (taxid:9913)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/88 (54%), Positives = 58/88 (65%)

Query:     1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
             MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKT------- 53

Query:    61 TAAFQQVGAAYNQHLLAQRPRLPVLPTP 88
             TAAFQQ G        A  P   ++P P
Sbjct:    54 TAAFQQ-GKIPPTPFSAPPPAGAMIPPP 80

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005685 "U1 snRNP" evidence=IEA

GO:0003727 "single-stranded RNA binding" evidence=IEA

GO:0000387 "spliceosomal snRNP assembly" evidence=IEA

UNIPROTKB|E2RGI3 SNRPC "U1 small nuclear ribonucleoprotein C" [Canis lupus familiaris (taxid:9615)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/88 (54%), Positives = 58/88 (65%)

Query:     1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
             MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKT------- 53

Query:    61 TAAFQQVGAAYNQHLLAQRPRLPVLPTP 88
             TAAFQQ G        A  P   ++P P
Sbjct:    54 TAAFQQ-GKIPPTPFSAPPPAGAMIPPP 80

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005685 "U1 snRNP" evidence=IEA

UNIPROTKB|K9J6N9 K9J6N9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/88 (54%), Positives = 58/88 (65%)

Query:     1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
             MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct:    10 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKT------- 62

Query:    61 TAAFQQVGAAYNQHLLAQRPRLPVLPTP 88
             TAAFQQ G        A  P   ++P P
Sbjct:    63 TAAFQQ-GKIPPTPFSAPPPAGAMIPPP 89

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|P09234 SNRPC "U1 small nuclear ribonucleoprotein C" [Homo sapiens (taxid:9606)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/88 (54%), Positives = 58/88 (65%)

Query:     1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
             MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKT------- 53

Query:    61 TAAFQQVGAAYNQHLLAQRPRLPVLPTP 88
             TAAFQQ G        A  P   ++P P
Sbjct:    54 TAAFQQ-GKIPPTPFSAPPPAGAMIPPP 80

GO:0005685 "U1 snRNP" evidence=IDA

GO:0003727 "single-stranded RNA binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0030619 "U1 snRNA binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0000387 "spliceosomal snRNP assembly" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0015030 "Cajal body" evidence=IDA

UNIPROTKB|F1RZ16 SNRPC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/88 (54%), Positives = 58/88 (65%)

Query:     1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
             MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKT------- 53

Query:    61 TAAFQQVGAAYNQHLLAQRPRLPVLPTP 88
             TAAFQQ G        A  P   ++P P
Sbjct:    54 TAAFQQ-GKIPPTPFSAPPPAGAMIPPP 80

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005685 "U1 snRNP" evidence=IEA

GO:0003727 "single-stranded RNA binding" evidence=IEA

GO:0000387 "spliceosomal snRNP assembly" evidence=IEA

MGI|MGI:109489 Snrpc "U1 small nuclear ribonucleoprotein C" [Mus musculus (taxid:10090)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/88 (54%), Positives = 58/88 (65%)

Query:     1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
             MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKT------- 53

Query:    61 TAAFQQVGAAYNQHLLAQRPRLPVLPTP 88
             TAAFQQ G        A  P   ++P P
Sbjct:    54 TAAFQQ-GKIPPAPFSAPPPAGAMIPPP 80

GO:0000387 "spliceosomal snRNP assembly" evidence=ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003727 "single-stranded RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005685 "U1 snRNP" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISO

GO:0015030 "Cajal body" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

RGD|1306065 Snrpc "small nuclear ribonucleoprotein polypeptide C" [Rattus norvegicus (taxid:10116)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/88 (54%), Positives = 58/88 (65%)

Query:     1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
             MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct:     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKT------- 53

Query:    61 TAAFQQVGAAYNQHLLAQRPRLPVLPTP 88
             TAAFQQ G        A  P   ++P P
Sbjct:    54 TAAFQQ-GKIPPAPFSAPPPAGAMIPPP 80

GO:0000387 "spliceosomal snRNP assembly" evidence=ISO

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003727 "single-stranded RNA binding" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005685 "U1 snRNP" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISO

GO:0015030 "Cajal body" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0030619 "U1 snRNA binding" evidence=ISO

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q56XE4	RU1C_ARATH	No assigned EC number	0.7094	0.7106	0.6763	yes	no
F6HQ26	RU1C_VITVI	No assigned EC number	0.7429	0.9949	0.9201	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	197
pfam06220	38	pfam06220, zf-U1, U1 zinc finger	1e-22
COG5136	188	COG5136, COG5136, U1 snRNP-specific protein C [RNA	4e-11
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	3e-09
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-05
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	8e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	9e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.003
pfam04652	315	pfam04652, DUF605, Vta1 like	0.004

>gnl|CDD|114912 pfam06220, zf-U1, U1 zinc finger

 Score = 85.6 bits (212), Expect = 1e-22
 Identities = 30/38 (78%), Positives = 32/38 (84%)

Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYY 38
          MP+YYCDYCD YLTHDSPSVRK HN G KHK NV+ YY
Sbjct: 1  MPKYYCDYCDCYLTHDSPSVRKSHNGGRKHKDNVKDYY 38

This family consists of several U1 small nuclear ribonucleoprotein C (U1-C) proteins. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site (ss) at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' ss is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' ss. Binding of TIA-1 in the vicinity of a 5' ss helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator. This domain is probably a zinc-binding. It is found in multiple copies in some members of the family. Length = 38

>gnl|CDD|227465 COG5136, COG5136, U1 snRNP-specific protein C [RNA processing and modification]

 Score = 58.9 bits (142), Expect = 4e-11
 Identities = 21/40 (52%), Positives = 26/40 (65%)

Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQ 40
          MPRY+C+YC+  LTHD  SVRK H  G KH    + YY +
Sbjct: 1  MPRYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRKDYYME 40

Length = 188

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 50.3 bits (121), Expect = 3e-09
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSY 37
             +YC  C+   T D  SV   H  G KHK NV+  
Sbjct: 1  TGGFYCKLCNVTFT-DEISVE-AHLKGKKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 34/128 (26%), Positives = 45/128 (35%), Gaps = 16/128 (12%)

Query: 78   QRPRLPVLPTPVMPMTGSA-----PLVPGMRPPVLPRPGPSPPGYVSAPGMPPMM----- 127
            QRPR       V  +T  A     P  P   P  L    P PPG  +A    P +     
Sbjct: 2681 QRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPA 2740

Query: 128  --APPGAPSAPGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATPQTYQANPTVPTS 185
              A P  P+ PG      RPP     TA   + APPA+ +  P     +   A+ +    
Sbjct: 2741 PPAVPAGPATPGGPARPARPPT----TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRE 2796

Query: 186  GNLNAQAP 193
               +   P
Sbjct: 2797 SLPSPWDP 2804

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.6 bits (100), Expect = 6e-05
 Identities = 26/113 (23%), Positives = 34/113 (30%), Gaps = 6/113 (5%)

Query: 77   AQRPRLPVLP-TPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSA 135
            A R   P LP  P  P   + P  PG        P  + P   + P  P    P      
Sbjct: 2727 AARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP 2786

Query: 136  PG-----QLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATPQTYQANPTVP 183
                        P P    +P A   + A     + +P+   P    A PT P
Sbjct: 2787 AVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP 2839

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 24/119 (20%), Positives = 33/119 (27%), Gaps = 2/119 (1%)

Query: 77   AQRPRLPVLPTPVMPMTGSAPLVPGMRPPVLPRP--GPSPPGYVSAPGMPPMMAPPGAPS 134
            A    +   P P  P             P  P    GP+ PG  + P  PP  A P AP+
Sbjct: 2711 APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPA 2770

Query: 135  APGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATPQTYQANPTVPTSGNLNAQAP 193
             P      P         A    +     S   P+            +P + +     P
Sbjct: 2771 PPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLP 2829

Length = 3151

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 28/115 (24%), Positives = 38/115 (33%), Gaps = 9/115 (7%)

Query: 73  QHLLAQ----RPRLPVLPTPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMA 128
            HL  Q    +PR+  LP    PM G+     G  P     P     G         MM 
Sbjct: 369 AHLQDQFMQLQPRMRQLPMG-SPMGGAM----GQPPYYGQGPQQQFNGQPLGWPRMSMMP 423

Query: 129 PPGAPSAPGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATPQTYQANPTVP 183
            P  P  P + NG     AV  P+  + +AA              Q+   +  +P
Sbjct: 424 TPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLP 478

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 24/106 (22%), Positives = 31/106 (29%), Gaps = 2/106 (1%)

Query: 83  PVLPTPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSAPGQLNGF 142
           PV      P    A             P  +PP  V+AP      A P A  A   L   
Sbjct: 393 PVAQAAAAP--APAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPA 450

Query: 143 PRPPAVMNPTAVSGSAAPPASSSGAPSMATPQTYQANPTVPTSGNL 188
           P   A     A+    AP  + + A          A  T    G++
Sbjct: 451 PPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 29/108 (26%), Positives = 35/108 (32%)

Query: 86   PTPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRP 145
            P P +P            PP  P P PS P   S    P        P AP    G PR 
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG 2610

Query: 146  PAVMNPTAVSGSAAPPASSSGAPSMATPQTYQANPTVPTSGNLNAQAP 193
            PA  +P      A  P   S +P+   P  +      P     +  AP
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAP 2658

Length = 3151

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 22/94 (23%), Positives = 27/94 (28%), Gaps = 7/94 (7%)

Query: 74  HLLAQRPRLPVLPTPVMPMTGSAPLVPGM-----RPPVLPRPGPSPPGYVSAPGMPPMMA 128
                   +P        +    P+ P       R P  PRPG  P G    P  P +  
Sbjct: 659 VPGPVPVGMPAHTARPSRVARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDL-- 716

Query: 129 PPGAPSAPGQLNGFPRPPAVMNPTAVSGSAAPPA 162
           P  A  AP   +    P A   P       A  A
Sbjct: 717 PAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGA 750

Length = 753

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 22/93 (23%), Positives = 25/93 (26%), Gaps = 5/93 (5%)

Query: 93  TGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRPPAVMNPT 152
            G         P    RP         AP  P   AP GA +AP + +  P P       
Sbjct: 598 EGPPAPASSGPPEEAARPAAPA-----APAAPAAPAPAGAAAAPAEASAAPAPGVAAPEH 652

Query: 153 AVSGSAAPPASSSGAPSMATPQTYQANPTVPTS 185
                A P AS  G    A           P  
Sbjct: 653 HPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAP 685

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 27/120 (22%), Positives = 36/120 (30%), Gaps = 11/120 (9%)

Query: 76  LAQRPRLPVLPTPVMPMTGSAPLVPGMRPPVL------PRPGPSPPGYVSAPGMPPMMAP 129
           LA  P  P+ P P +P   +AP                P+    PP   SAP   P +  
Sbjct: 357 LAFHPAAPL-PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPL 415

Query: 130 PGAPS----APGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATPQTYQANPTVPTS 185
           P   S    A  QL               + S A P +S+     +      A    P  
Sbjct: 416 PETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAK 475

Length = 647

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 26/110 (23%), Positives = 32/110 (29%), Gaps = 3/110 (2%)

Query: 83  PVLPTPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSAPGQLNGF 142
                                PP      PS P     P  P   + P APS+       
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPP 225

Query: 143 PRPPAVMNPTAVSGSAAPPASSSG---APSMATPQTYQANPTVPTSGNLN 189
           P P +  NP+   G AAPP          S A P    A+ T    G + 
Sbjct: 226 PSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGIT 275

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	197
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	99.89
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	99.78
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	99.62
COG5136	188	U1 snRNP-specific protein C [RNA processing and mo	99.57
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	99.09
KOG4727	193	consensus U1-like Zn-finger protein [General funct	98.73
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.54
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	98.28
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	98.13
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.11
KOG2893	341	consensus Zn finger protein [General function pred	98.01
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	97.48
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	97.46
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	96.78
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	96.75
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	96.51
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	95.84
PF04988	165	AKAP95: A-kinase anchoring protein 95 (AKAP95); In	95.61
PF14968	336	CCDC84: Coiled coil protein 84	94.39
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	94.37
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	93.95
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	93.7
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	93.31
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	92.98
KOG3032	264	consensus Uncharacterized conserved protein [Funct	92.9
KOG2384	223	consensus Major histocompatibility complex protein	92.81
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	92.1
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	90.89
PF14968	336	CCDC84: Coiled coil protein 84	90.75
smart00355	26	ZnF_C2H2 zinc finger.	89.43
KOG0796	319	consensus Spliceosome subunit [RNA processing and	88.31
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	87.69
PF04988	165	AKAP95: A-kinase anchoring protein 95 (AKAP95); In	83.61
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	83.19
PTZ00448	373	hypothetical protein; Provisional	82.78
PHA02768	55	hypothetical protein; Provisional	82.49
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	81.76
KOG2505	591	consensus Ankyrin repeat protein [General function	80.63

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=99.89  E-value=5.6e-23  Score=170.44  Aligned_cols=59  Identities=66%  Similarity=1.151  Sum_probs=55.6

Q ss_pred             CCcccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 029213            1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLG   59 (197)
Q Consensus         1 MPryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~~~~ek~Q~l~dk~lkk~l~   59 (197)
                      |+||||||||+||+|||+||||.|+.|++|++||+.||+.|.+|++|.+||+..+..+.
T Consensus         1 MpRYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY~k~~eeqAq~liD~~~~~~~~   59 (165)
T KOG3454|consen    1 MPRYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYYQKWMEEQAQKLIDETILRFIG   59 (165)
T ss_pred             CCcchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            89999999999999999999999999999999999999999999999999997777654

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.78  E-value=5.7e-20  Score=119.68  Aligned_cols=38  Identities=76%  Similarity=1.521  Sum_probs=26.3

Q ss_pred             CCcccccCCcceeccCCHHHHHHhhcchHHHHHHHHHH
Q 029213            1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYY   38 (197)
Q Consensus         1 MPryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy   38 (197)
                      |+||||||||+||++|+.++|++|+.|++|++||++||
T Consensus         1 m~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~y   38 (38)
T PF06220_consen    1 MPRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRYY   38 (38)
T ss_dssp             --S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHHT
T ss_pred             CcCeecccccceecCCChHHHHHhhccHHHHHHHHHhC
Confidence            89999999999999999999999999999999999986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=99.62  E-value=6.3e-16  Score=139.26  Aligned_cols=72  Identities=25%  Similarity=0.584  Sum_probs=65.8

Q ss_pred             CcccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhhHHHHHHhHHhhhhhh
Q 029213            2 PRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQ-TQSLIDQRIKEHLGQTAAFQQVGAAYNQHLL   76 (197)
Q Consensus         2 PryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~~~~ek-~Q~l~dk~lkk~l~~teaf~~ag~~y~~dla   76 (197)
                      +++|||||+|||. |+..+++.|++|+||+.||+++++.+++.. .+.+.++.|.+.|++||+.  |-++|++||.
T Consensus         9 ~kkfCdyCKiWi~-dN~~Sv~~He~GkrHke~V~Kritdi~rks~~kekeekKls~~la~mEaa--A~~syaedl~   81 (336)
T KOG0150|consen    9 PKKFCDYCKIWIK-DNPASVRFHERGKRHKENVAKRITDIHRKSLKKEKEEKKLSKELAAMEAA--ASASYAEDLS   81 (336)
T ss_pred             cchhhhhhhhhhc-CChHHHHhHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhhHHHHHHHH--HHHHHHHhhh
Confidence            6899999999995 778778999999999999999999999884 5777999999999999995  8999999997

>COG5136 U1 snRNP-specific protein C [RNA processing and modification]

Probab=99.57  E-value=1.4e-15  Score=127.22  Aligned_cols=57  Identities=42%  Similarity=0.799  Sum_probs=48.0

Q ss_pred             CCcccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhH
Q 029213            1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTA   62 (197)
Q Consensus         1 MPryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~~~~ek~Q~l~dk~lkk~l~~te   62 (197)
                      |+|||||||++||+||++||||.|+.|++|..++++||..+-++     |.++..+.|..|.
T Consensus         1 MpRY~CeyC~~~LthD~lsvRk~H~~G~~H~~~~~dYY~~~a~d-----i~~e~~~~lr~i~   57 (188)
T COG5136           1 MPRYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRKDYYMEMAED-----IAAEMASILRDIK   57 (188)
T ss_pred             CcchHHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999987653     3344444455554

>smart00451 ZnF_U1 U1-like zinc finger

Probab=99.09  E-value=5.3e-11  Score=73.53  Aligned_cols=35  Identities=31%  Similarity=0.586  Sum_probs=29.9

Q ss_pred             CCcccccCCcceeccCCHHHHHHhhcchHHHHHHHHH
Q 029213            1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSY   37 (197)
Q Consensus         1 MPryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~y   37 (197)
                      +++|||++|+++|.  +.+.+++|+.|++|++|++++
T Consensus         1 ~~~~~C~~C~~~~~--~~~~~~~H~~gk~H~~~~~~~   35 (35)
T smart00451        1 TGGFYCKLCNVTFT--DEISVEAHLKGKKHKKNVKKR   35 (35)
T ss_pred             CcCeEccccCCccC--CHHHHHHHHChHHHHHHHHcC
Confidence            57899999999994  455569999999999999864

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=98.73  E-value=4e-08  Score=83.33  Aligned_cols=35  Identities=37%  Similarity=0.603  Sum_probs=30.1

Q ss_pred             CCcccccCCcceeccCCHHHHHHhhcchHHHHHHHHH
Q 029213            1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSY   37 (197)
Q Consensus         1 MPryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~y   37 (197)
                      +++||||+|||.+ .||.. +.+|++|++|++|+...
T Consensus        73 ~~GyyCdVCdcvv-KDSin-flDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   73 KGGYYCDVCDCVV-KDSIN-FLDHINGKKHQRNLGMS  107 (193)
T ss_pred             cCceeeeecceee-hhhHH-HHHHhccHHHHHHHhhh
Confidence            4689999999999 59888 59999999999995443

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.54  E-value=4.6e-08  Score=58.27  Aligned_cols=27  Identities=48%  Similarity=0.912  Sum_probs=23.8

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHK   31 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk   31 (197)
                      +|||++||++|  .+...+++|++|++||
T Consensus         1 q~~C~~C~k~f--~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYF--SSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBB--SSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCc--CCHHHHHHHHccCCCC
Confidence            58999999999  4678889999999997

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=98.28  E-value=2.4e-05  Score=78.70  Aligned_cols=19  Identities=37%  Similarity=0.646  Sum_probs=10.2

Q ss_pred             CCCCCCCCCCCCCCCCCCC
Q 029213          103 RPPVLPRPGPSPPGYVSAP  121 (197)
Q Consensus       103 ~pp~~p~~~p~~pg~~~~p  121 (197)
                      +||+.++|+||.+|.+++|
T Consensus       542 pppPppPPlpggag~PPPP  560 (1102)
T KOG1924|consen  542 PPPPPPPPLPGGAGPPPPP  560 (1102)
T ss_pred             CCCCCCCCCCCCCCCCccC
Confidence            3344456677776644433

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=98.13  E-value=2.5e-06  Score=79.48  Aligned_cols=61  Identities=15%  Similarity=0.246  Sum_probs=45.6

Q ss_pred             CcccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhhHHHH
Q 029213            2 PRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQ-QTQSLIDQRIKEHLGQTAAFQ   65 (197)
Q Consensus         2 PryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~~~~e-k~Q~l~dk~lkk~l~~teaf~   65 (197)
                      +++||.+|.+||  ...+|+..|+.||+|.+|+++.-...+.| .+++ +.+.+.+.+..|++||
T Consensus       237 ~~~YC~~C~r~f--~~~~VFe~Hl~gK~H~k~~~~~~~~v~~Ey~l~r-~~kyl~d~~s~trs~V  298 (470)
T COG5188         237 PKVYCVKCGREF--SRSKVFEYHLEGKRHCKEGQGKEEFVYSEYVLHR-YLKYLGDPVSETRSLV  298 (470)
T ss_pred             cceeeHhhhhHh--hhhHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHhCChhHHHHHHH
Confidence            478999999999  56799999999999999998876655555 4444 4555555555555553

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.11  E-value=2.2e-06  Score=49.44  Aligned_cols=25  Identities=36%  Similarity=0.766  Sum_probs=22.8

Q ss_pred             ccccCCcceeccCCHHHHHHhhcchHH
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNAGYKH   30 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~GkrH   30 (197)
                      |+|+.|++.|  .+...+++|++|++|
T Consensus         1 ~~C~~C~~~f--~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSF--SSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEE--SSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCc--CCHHHHHHHHCcCCC
Confidence            7999999999  567788999999998

>KOG2893 consensus Zn finger protein [General function prediction only]

Probab=98.01  E-value=7.4e-05  Score=67.14  Aligned_cols=25  Identities=24%  Similarity=0.563  Sum_probs=20.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYK   29 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~Gkr   29 (197)
                      |-||=|||+-|  |...++.+|..-|.
T Consensus        10 kpwcwycnref--ddekiliqhqkakh   34 (341)
T KOG2893|consen   10 KPWCWYCNREF--DDEKILIQHQKAKH   34 (341)
T ss_pred             Cceeeeccccc--chhhhhhhhhhhcc
Confidence            45999999999  77788899877554

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=97.48  E-value=5.4e-05  Score=61.28  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=29.3

Q ss_pred             CCcccccCCcceeccCCHHHHHHhhcchHHHHHHHHH
Q 029213            1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSY   37 (197)
Q Consensus         1 MPryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~y   37 (197)
                      ++-|||-.|++||  .+.++++.|..++.||+.|++.
T Consensus        55 ~GqfyCi~CaRyF--i~~~~l~~H~ktK~HKrRvK~l   89 (129)
T KOG3408|consen   55 GGQFYCIECARYF--IDAKALKTHFKTKVHKRRVKEL   89 (129)
T ss_pred             Cceeehhhhhhhh--cchHHHHHHHhccHHHHHHHhc
Confidence            4579999999999  4567789999999999776653

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=9.4e-05  Score=70.78  Aligned_cols=40  Identities=35%  Similarity=0.589  Sum_probs=36.6

Q ss_pred             ccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQ   45 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~~~~ek   45 (197)
                      +||..|++.|  .|...+++|+++|+|++||++.-+.++++.
T Consensus       293 lyC~vCnKsF--KseKq~kNHEnSKKHkenv~eLrqemEEEe  332 (508)
T KOG0717|consen  293 LYCVVCNKSF--KSEKQLKNHENSKKHKENVAELRQEMEEEE  332 (508)
T ss_pred             eEEeeccccc--cchHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            7999999999  678889999999999999999998888763

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=96.78  E-value=0.00051  Score=54.94  Aligned_cols=34  Identities=24%  Similarity=0.471  Sum_probs=29.6

Q ss_pred             CcccccCCcceeccCCHHHHHHhhcchHHHHHHHHH
Q 029213            2 PRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSY   37 (197)
Q Consensus         2 PryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~y   37 (197)
                      +.+||-.|++||  ++..++..|..|+-|++.+++.
T Consensus        54 GqhYCieCaryf--~t~~aL~~HkkgkvHkRR~Kel   87 (126)
T COG5112          54 GQHYCIECARYF--ITEKALMEHKKGKVHKRRAKEL   87 (126)
T ss_pred             ceeeeehhHHHH--HHHHHHHHHhccchhHHHHHHH
Confidence            368999999999  7888889999999999877654

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=96.75  E-value=0.092  Score=53.86  Aligned_cols=9  Identities=11%  Similarity=-0.193  Sum_probs=6.5

Q ss_pred             cccCCccee
Q 029213            5 YCDYCDTYL   13 (197)
Q Consensus         5 YCdYCd~~f   13 (197)
                      .|++||--|
T Consensus       438 Hr~~~DPdf  446 (1102)
T KOG1924|consen  438 HRTGMDPDF  446 (1102)
T ss_pred             hcCCCCCCc
Confidence            577887766

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=96.51  E-value=0.0018  Score=56.33  Aligned_cols=42  Identities=24%  Similarity=0.441  Sum_probs=35.0

Q ss_pred             CcccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 029213            2 PRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQ   45 (197)
Q Consensus         2 PryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~~~~ek   45 (197)
                      ++|-|..|.+.  |.+-.++..|..||||+.|+.++-....+++
T Consensus        52 G~yeCkLClT~--H~ne~Syl~HtqGKKHq~Nlarraa~e~k~s   93 (222)
T KOG0227|consen   52 GKYECKLCLTL--HNNEGSYLAHTQGKKHQTNLARRAAKEAKES   93 (222)
T ss_pred             cceeehhhhhh--hcchhhhhhhhccchhhHHHHHHHHHHhhcC
Confidence            58999999986  5677778999999999999999877655543

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=95.84  E-value=0.0081  Score=52.11  Aligned_cols=34  Identities=29%  Similarity=0.415  Sum_probs=29.8

Q ss_pred             CcccccCCcceeccCCHHHHHHhhcchHHHHHHHHH
Q 029213            2 PRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSY   37 (197)
Q Consensus         2 PryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~y   37 (197)
                      ++|-|..|++.-  -+-+++..|..||||+.|+.++
T Consensus        52 Gk~vC~LC~T~H--~~e~Sy~~H~~GKKH~~n~~rr   85 (222)
T COG5246          52 GKYVCLLCKTKH--LTEMSYVKHREGKKHKENSSRR   85 (222)
T ss_pred             CcEEeeeecccc--ccHHHHHHhhccchhhhhHHHH
Confidence            589999999874  5667779999999999999998

>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex

Probab=95.61  E-value=0.022  Score=48.15  Aligned_cols=41  Identities=22%  Similarity=0.382  Sum_probs=37.3

Q ss_pred             ccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQ   45 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~~~~ek   45 (197)
                      ..|--||.+|- ...++...|+.+..|.+|++.+..+++++.
T Consensus        92 ~hCsACd~~IP-~~~~~vQ~Hl~S~~H~~Nrr~~~eq~Kr~s  132 (165)
T PF04988_consen   92 AHCSACDVFIP-MQHSSVQKHLKSQDHNKNRRAMMEQSKRSS  132 (165)
T ss_pred             hhhhHhhhhcc-CcHHHHHHHhccHHHHhhHHHHHHHHHHHH
Confidence            47999999995 778888999999999999999999999885

The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus

>PF14968 CCDC84: Coiled coil protein 84

Probab=94.39  E-value=0.022  Score=52.61  Aligned_cols=38  Identities=24%  Similarity=0.590  Sum_probs=30.2

Q ss_pred             cccccCCcceeccCCH-----HHHHHhhcchHHHHHHHHHHHHH
Q 029213            3 RYYCDYCDTYLTHDSP-----SVRKQHNAGYKHKANVRSYYQQF   41 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~-----SvRk~H~~GkrHk~NVk~yy~~~   41 (197)
                      +|||-+||.-+. |..     .....|+.+..|++||++++...
T Consensus        58 ~fWC~fC~~ev~-~~~s~~~~~~ai~HLaS~eH~k~vk~F~w~~  100 (336)
T PF14968_consen   58 RFWCVFCDCEVR-EHDSSFACGGAIEHLASPEHRKNVKKFWWKN  100 (336)
T ss_pred             eeEeeCccchhh-hccchhhhccHHhhcCCHHHHHHHHHHHHHc
Confidence            789999999994 442     12468999999999999996554

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=94.37  E-value=0.033  Score=30.40  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=15.9

Q ss_pred             ccccCCcceeccCCHHHHHHhhc
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      |-|++|++.|  ++...++.|+.
T Consensus         1 ~~C~~C~~~~--~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSF--RSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EE--SSHHHHHHHHH
T ss_pred             CCCcCCCCcC--CcHHHHHHHHH
Confidence            6799999999  67788888875

...

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.95  E-value=0.046  Score=30.50  Aligned_cols=21  Identities=33%  Similarity=0.562  Sum_probs=17.5

Q ss_pred             ccccCCcceeccCCHHHHHHhhc
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      |-|++|++.|  .+.+.++.|..
T Consensus         1 y~C~~C~~~f--~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSF--SSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEE--SSHHHHHHHHH
T ss_pred             CCCCCCCCcc--CCHHHHHHHHh
Confidence            6799999999  56777888875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=93.70  E-value=0.019  Score=40.97  Aligned_cols=30  Identities=23%  Similarity=0.522  Sum_probs=24.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANV   34 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NV   34 (197)
                      .+.|.+|++.|  ++...++.|++.+.|++..
T Consensus        50 ~~~C~~C~~~f--~s~~~l~~Hm~~~~H~~~~   79 (100)
T PF12756_consen   50 SFRCPYCNKTF--RSREALQEHMRSKHHKKRN   79 (100)
T ss_dssp             SEEBSSSS-EE--SSHHHHHHHHHHTTTTC-S
T ss_pred             CCCCCccCCCC--cCHHHHHHHHcCccCCCcc
Confidence            38999999999  6788889999999998654

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=93.31  E-value=0.067  Score=30.96  Aligned_cols=21  Identities=29%  Similarity=0.616  Sum_probs=18.1

Q ss_pred             ccccCCcceeccCCHHHHHHhhc
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      |.|+.|++.|  .+.+.+..|..
T Consensus         2 ~~C~~C~~~F--~~~~~l~~H~~   22 (27)
T PF13912_consen    2 FECDECGKTF--SSLSALREHKR   22 (27)
T ss_dssp             EEETTTTEEE--SSHHHHHHHHC
T ss_pred             CCCCccCCcc--CChhHHHHHhH
Confidence            7899999999  67888898874

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=92.98  E-value=0.15  Score=45.10  Aligned_cols=39  Identities=21%  Similarity=0.483  Sum_probs=27.4

Q ss_pred             ccccCCcceec-cCCHHHHHHhhcchHHHHH--HHHHHHHHH
Q 029213            4 YYCDYCDTYLT-HDSPSVRKQHNAGYKHKAN--VRSYYQQFE   42 (197)
Q Consensus         4 yYCdYCd~~ft-~Ds~SvRk~H~~GkrHk~N--Vk~yy~~~~   42 (197)
                      --||+|+.||+ +|+.+=+.+|..||.|..=  +++.|..+.
T Consensus       191 ~VCeVCGA~Ls~~D~d~RladH~~GK~HlGy~~IR~~l~el~  232 (254)
T PF03194_consen  191 EVCEVCGAFLSVGDNDRRLADHFGGKQHLGYAKIREKLKELK  232 (254)
T ss_pred             cchhhhhhHHhccchHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence            46999999984 4766655779999999853  333344444

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.90  E-value=0.074  Score=47.59  Aligned_cols=33  Identities=24%  Similarity=0.503  Sum_probs=28.6

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHHHHHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYY   38 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy   38 (197)
                      ..-|-+|++-|  . .++|..|.+|++|+.+|....
T Consensus        35 ql~C~vCn~pi--K-p~lW~vHvnsKkHre~id~lK   67 (264)
T KOG3032|consen   35 QLVCRVCNVPI--K-PSLWDVHVNSKKHREAIDSLK   67 (264)
T ss_pred             CeeEEEecCcc--c-HHHHHHHhccHHHHHHHHHHH
Confidence            45799999999  3 899999999999998887655

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=92.81  E-value=0.029  Score=49.13  Aligned_cols=31  Identities=26%  Similarity=0.684  Sum_probs=24.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHHHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRS   36 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~   36 (197)
                      -+||+.||+||. |+.+  -.|..+..|+-|.+.
T Consensus        84 lfyCE~Cd~~ip-~~~~--snH~tSttHllsl~~  114 (223)
T KOG2384|consen   84 LFYCEVCDIYIP-NSKK--SNHFTSTTHLLSLQH  114 (223)
T ss_pred             cchhhhhhhhcc-CCCC--ccchhhHHHHhhhcc
Confidence            589999999994 6554  478888888877654

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.10  E-value=0.091  Score=36.19  Aligned_cols=25  Identities=28%  Similarity=0.573  Sum_probs=20.8

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKA   32 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~   32 (197)
                      .-||+.|.+.|  |+   +..|+.+.+|++
T Consensus         5 ~GYCE~C~~ky--~~---l~~Hi~s~~Hr~   29 (49)
T PF07535_consen    5 PGYCENCRVKY--DD---LEEHIQSEKHRK   29 (49)
T ss_pred             CccCccccchh--hh---HHHHhCCHHHHH
Confidence            45999999999  32   588999999983

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=90.89  E-value=0.11  Score=35.97  Aligned_cols=25  Identities=28%  Similarity=0.530  Sum_probs=20.7

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKA   32 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~   32 (197)
                      .-||+-|...|  |+   +..|+.+++|++
T Consensus         5 ~GYCE~Cr~kf--d~---l~~Hi~s~~Hr~   29 (49)
T smart00586        5 PGYCENCREKY--DD---LETHLLSEKHRR   29 (49)
T ss_pred             CcccccHhHHH--hh---HHHHhccHHHHH
Confidence            35999999999  42   578999999983

>PF14968 CCDC84: Coiled coil protein 84

Probab=90.75  E-value=0.22  Score=46.13  Aligned_cols=35  Identities=23%  Similarity=0.623  Sum_probs=30.0

Q ss_pred             cccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 029213            5 YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQ   44 (197)
Q Consensus         5 YCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~~~~e   44 (197)
                      ||+.|.+..  |.   ++.|.-+++|+++++..+..|+..
T Consensus         1 yC~vCr~~h--~~---gr~H~Y~~~Hq~~L~~~L~rf~~K   35 (336)
T PF14968_consen    1 YCEVCRRNH--DQ---GRRHVYSPKHQKSLSAFLSRFRSK   35 (336)
T ss_pred             CcchhhCcc--cc---cCCCccCHHHHHHHHHHHHHHHHH
Confidence            899999875  53   699999999999999998888744

>smart00355 ZnF_C2H2 zinc finger

Probab=89.43  E-value=0.29  Score=26.59  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=16.1

Q ss_pred             ccccCCcceeccCCHHHHHHhhc
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      |-|+.|++.|  .+.+.++.|..
T Consensus         1 ~~C~~C~~~f--~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVF--KSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchh--CCHHHHHHHHH
Confidence            5799999999  34566677775

>KOG0796 consensus Spliceosome subunit [RNA processing and modification]

Probab=88.31  E-value=0.68  Score=42.86  Aligned_cols=40  Identities=20%  Similarity=0.497  Sum_probs=28.5

Q ss_pred             cccCCcceec-cCCHHHHHHhhcchHHHHH--HHHHHHHHHHH
Q 029213            5 YCDYCDTYLT-HDSPSVRKQHNAGYKHKAN--VRSYYQQFEEQ   44 (197)
Q Consensus         5 YCdYCd~~ft-~Ds~SvRk~H~~GkrHk~N--Vk~yy~~~~~e   44 (197)
                      .|++|+.||. +|+.+=...|++||-|..-  ++..|..++++
T Consensus       188 VCeVCGa~L~~~D~d~RlaDHf~GKlHlGy~~iR~~l~eLk~~  230 (319)
T KOG0796|consen  188 VCEVCGAFLSVNDADRRLADHFGGKLHLGYVLIREKLAELKKE  230 (319)
T ss_pred             HHHhhhHHHhccchHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            5999999985 4555545569999999965  34445555544

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=87.69  E-value=0.21  Score=47.16  Aligned_cols=36  Identities=25%  Similarity=0.513  Sum_probs=31.7

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQ   40 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~   40 (197)
                      -+||..|++.|  .+....++|+..++|+.|+.++++.
T Consensus        68 ~~~c~~c~k~~--~s~~a~~~hl~Sk~h~~~~~~~~r~  103 (390)
T KOG2785|consen   68 VVYCEACNKSF--ASPKAHENHLKSKKHVENLSNHQRS  103 (390)
T ss_pred             ceehHHhhccc--cChhhHHHHHHHhhcchhhhhhhcc
Confidence            47999999999  4666679999999999999999973

>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex

Probab=83.61  E-value=2.1  Score=36.42  Aligned_cols=32  Identities=16%  Similarity=0.341  Sum_probs=24.2

Q ss_pred             ccccCCcceeccCCHHHHHHhhcchHHHHHHHHH
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSY   37 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~y   37 (197)
                      |.|.+|+-...  .......|+.++.|++-++.-
T Consensus         1 F~Cs~CKfrtf--~~~ei~~HleS~~H~E~~~~i   32 (165)
T PF04988_consen    1 FTCSFCKFRTF--EEKEIEKHLESKFHKETLKYI   32 (165)
T ss_pred             Cccceeeeecc--cHHHHHHHHccchHHHHHHHH
Confidence            67999997764  334569999999999765544

The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=83.19  E-value=2.3  Score=37.17  Aligned_cols=29  Identities=24%  Similarity=0.607  Sum_probs=18.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANV   34 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NV   34 (197)
                      ||.|..|.|-|  .....++.|+. .||.+-|
T Consensus        77 K~~C~lc~KlF--kg~eFV~KHI~-nKH~e~v  105 (214)
T PF04959_consen   77 KWRCPLCGKLF--KGPEFVRKHIF-NKHPEKV  105 (214)
T ss_dssp             EEEE-SSS-EE--SSHHHHHHHHH-HH-HHHH
T ss_pred             EECCCCCCccc--CChHHHHHHHh-hcCHHHH
Confidence            78999999999  44555577776 4566444

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PTZ00448 hypothetical protein; Provisional

Probab=82.78  E-value=0.81  Score=43.17  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=33.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFE   42 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~~~   42 (197)
                      .|.|--|+..|  ++...++.|..+--|+-|++++++.+-
T Consensus       314 ~~tC~~C~v~F--~~~~~qR~H~KSDwHrYNLKRkl~gLp  351 (373)
T PTZ00448        314 MLLCRKCNIQL--MDHNAFKQHYRSEWHIFNTKRNARKME  351 (373)
T ss_pred             Ccccccccccc--CCHHHHHHHhhhhHHHHHHHHHhcCCC
Confidence            37799999999  567778999999999999999998864

>PHA02768 hypothetical protein; Provisional

Probab=82.49  E-value=0.85  Score=32.24  Aligned_cols=21  Identities=19%  Similarity=0.355  Sum_probs=14.6

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      +|.|+.|++.|+ . .+.+..|.
T Consensus         5 ~y~C~~CGK~Fs-~-~~~L~~H~   25 (55)
T PHA02768          5 GYECPICGEIYI-K-RKSMITHL   25 (55)
T ss_pred             ccCcchhCCeec-c-HHHHHHHH
Confidence            689999999995 3 33344444

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.76  E-value=0.88  Score=29.18  Aligned_cols=23  Identities=26%  Similarity=0.522  Sum_probs=15.1

Q ss_pred             cccccCCcceeccC--CHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHD--SPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~D--s~SvRk~H~   25 (197)
                      +..|.||++.|..+  +.+.++.|+
T Consensus        16 ~a~C~~C~~~~~~~~~~ts~l~~HL   40 (45)
T PF02892_consen   16 KAKCKYCGKVIKYSSGGTSNLKRHL   40 (45)
T ss_dssp             -EEETTTTEE-----SSTHHHHHHH
T ss_pred             eEEeCCCCeEEeeCCCcHHHHHHhh
Confidence            56899999999765  666777787

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=80.63  E-value=0.94  Score=44.60  Aligned_cols=37  Identities=16%  Similarity=0.252  Sum_probs=33.6

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQF   41 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~~   41 (197)
                      +.+|-.|++-|  ++...++.|...--|+-|+++.++.+
T Consensus        66 ~~~CstCq~~F--~s~~eqr~HyksD~HR~N~Krkl~~~  102 (591)
T KOG2505|consen   66 SDQCSTCQIPF--GSRQEQREHYKSDWHRFNTKRKLRGK  102 (591)
T ss_pred             cccccccCCcc--ccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            56899999999  78999999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	197
2vrd_A	61	The Structure Of The Zinc Finger From The Human Spl		2e-19
3cw1_L	77	Crystal Structure Of Human Spliceosomal U1 Snrnp Le		5e-19

>pdb|2VRD|A Chain A, The Structure Of The Zinc Finger From The Human Spliceosomal Protein U1c Length = 61

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)
Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
          MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53
Query: 61 TAAFQQ 66
          TAAFQQ
Sbjct: 54 TAAFQQ 59

>pdb|3CW1|L Chain L, Crystal Structure Of Human Spliceosomal U1 Snrnp Length = 77

Iteration: 1
 Score = 90.5 bits (223), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 50/66 (75%), Gaps = 7/66 (10%)
Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
          MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YY ++ E+Q QSLID+        
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWMEEQAQSLIDK-------T 53
Query: 61 TAAFQQ 66
          TAAFQQ
Sbjct: 54 TAAFQQ 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	197
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	2e-26
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	5e-04

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A Length = 77

 Score = 95.4 bits (237), Expect = 2e-26
 Identities = 36/57 (63%), Positives = 44/57 (77%)

Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEH 57
          MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YY ++ E+Q QSLID+     
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWMEEQAQSLIDKTTAAF 57

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.7 bits (97), Expect = 8e-05
 Identities = 13/109 (11%), Positives = 22/109 (20%), Gaps = 1/109 (0%)

Query: 86  PTPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRP 145
           P   +    +A  +      + P+   +        GMPP  A P             + 
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 146 P-AVMNPTAVSGSAAPPASSSGAPSMATPQTYQANPTVPTSGNLNAQAP 193
              +   T               P+             P        A 
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 13/110 (11%), Positives = 18/110 (16%), Gaps = 3/110 (2%)

Query: 88  PVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSAPGQLNGFPRPPA 147
           P   +       P  +P     P               M  PP           F  P  
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAA---GMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66

Query: 148 VMNPTAVSGSAAPPASSSGAPSMATPQTYQANPTVPTSGNLNAQAPEMNH 197
                 +  +                      P VP       Q  +   
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPM 116

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 16/64 (25%)

Query: 16  DSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQTAAFQQVGAAYNQHL 75
           D+ S   +     K K ++  + Q+  EQ  ++ I+ RI +      AF           
Sbjct: 102 DAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD-----KAF----------- 145

Query: 76  LAQR 79
             Q 
Sbjct: 146 YQQP 149

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 6/102 (5%)

Query: 76  LAQRPRLPVLPTPVMPMTGSAPLVPGMRPPVLPRPGPSPPGYVSAPGMPPMMAPPGAPSA 135
           L  R    V+P+  +    S  L     P  +P P P P      P  P    PP   + 
Sbjct: 14  LVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPP------PPAPAAGNPPDTVTG 67

Query: 136 PGQLNGFPRPPAVMNPTAVSGSAAPPASSSGAPSMATPQTYQ 177
              L    R P     T+++ +             + P    
Sbjct: 68  DSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAG 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	197
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	99.89
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	98.41
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	98.12
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	98.01
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	94.97
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	92.51
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	92.01
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	92.0
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.67
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	91.64
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	91.45
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	91.44
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.42
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.33
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	91.33
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	91.33
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.28
1ard_A	29	Yeast transcription factor ADR1; transcription reg	91.21
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	91.15
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	91.13
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	91.13
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	90.67
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	90.51
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	90.15
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.74
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	89.72
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	89.69
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.69
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	89.17
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	89.57
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	89.2
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	89.17
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	89.11
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	89.09
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	89.08
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	89.07
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	89.02
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.01
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	88.65
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.96
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.94
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.91
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	88.91
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	88.88
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.82
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	88.75
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	88.72
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	88.7
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	88.38
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.58
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	88.52
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	88.4
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.38
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	88.34
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.23
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.21
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	88.18
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.14
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.13
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.09
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	88.07
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.05
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	88.02
1paa_A	30	Yeast transcription factor ADR1; transcription reg	88.01
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	88.0
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	88.0
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.95
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.9
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.87
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.86
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	87.86
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.81
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.8
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.77
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	87.77
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	87.7
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	87.68
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	87.6
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.57
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	87.49
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	87.41
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.36
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	87.32
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.32
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	87.3
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.29
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.25
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	87.12
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.02
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.97
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.96
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.94
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.9
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.87
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.86
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	86.86
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	86.77
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	86.76
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	86.71
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.71
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	86.68
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	86.6
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.59
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	86.59
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.57
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	86.56
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.53
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.52
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.5
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	86.49
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.43
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.4
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.38
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.34
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.29
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	86.28
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	86.28
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	86.28
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.23
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.22
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.15
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	86.05
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	86.01
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	86.0
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	85.96
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.87
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	85.85
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	85.74
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.69
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.57
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.2
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	85.11
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	84.91
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.85
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	84.81
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	84.69
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	84.64
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	84.52
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	84.47
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	84.43
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	84.33
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	83.86
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	83.78
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	83.57
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	83.51
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	83.49
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	83.45
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	83.29
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	83.25
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	83.24
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	83.22
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	83.22
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	83.2
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	82.91
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	82.63
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	82.34
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	82.23
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	82.19
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	81.73
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	81.52
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	81.51
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	81.4
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	80.59
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	80.25

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=99.89  E-value=2e-23  Score=153.79  Aligned_cols=52  Identities=69%  Similarity=1.251  Sum_probs=49.6

Q ss_pred             CCcccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHHHHHHHhhHHHHH
Q 029213            1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQ   52 (197)
Q Consensus         1 MPryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~~~~ek~Q~l~dk   52 (197)
                      ||||||||||+||+|||.++|++|++|++|++||++||++|+++++|+++|+
T Consensus         1 mPkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy~~~~~~~~~~~id~   52 (77)
T 3cw1_L            1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYCKWMEEQAQSLIDK   52 (77)
T ss_pred             CCCcccccCCceecCCCHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999988887765

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=98.41  E-value=3.5e-07  Score=84.08  Aligned_cols=64  Identities=19%  Similarity=0.359  Sum_probs=52.6

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhhHHHHHHhH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQ-QTQSLIDQRIKEHLGQTAAFQQVGA   69 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~~~~e-k~Q~l~dk~lkk~l~~teaf~~ag~   69 (197)
                      +.||..|+|||  .+.+|++.|+.|++|++|++++..-...| +++. +.+.|.++++.|++++.-.+
T Consensus       292 ~l~C~~c~K~F--s~~~v~~~hL~GKkh~K~~~~~k~iA~~E~~I~~-l~~~L~~~~~~Tk~nVERKq  356 (402)
T 4dgw_A          292 GIYCPFCSRWF--KTSSVFESHLVGKIHKKNESKRRNFVYSEYKLHR-YLKYLNDEFSRTRSFVERKL  356 (402)
T ss_dssp             EECBTTTTBCB--SSHHHHHTTSSSHHHHHHHHHSHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHHH
T ss_pred             Ceeehhhhhhh--ccccccHHHhcccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            58999999999  58999999999999999998876655555 5666 55788899999988875433

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=98.12  E-value=1.5e-06  Score=67.34  Aligned_cols=36  Identities=31%  Similarity=0.438  Sum_probs=32.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQ   40 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~   40 (197)
                      .+||++|++.|  ++.+.++.|+.|++|++||+.|+..
T Consensus        32 ~~~C~~C~v~~--~S~s~~~~H~~gkkH~~~v~~~~~~   67 (127)
T 1zu1_A           32 DTQCKVCSAVL--ISESQKLAHYQSRKHANKVRRYMAI   67 (127)
T ss_dssp             SSEETTTTEEC--CSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCcCcCCCCEe--CCHHHHHHHHCcHHHHHHHHHHhcc
Confidence            47999999999  5889999999999999999887763

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=98.01  E-value=3e-06  Score=66.88  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=29.6

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHHHHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSY   37 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~y   37 (197)
                      .|||..|+++|  .+.+.++.|.++++|+++|+++
T Consensus        50 pfyC~~C~K~F--~~~~~L~~H~rsK~HKrrvk~l   82 (124)
T 1zr9_A           50 LHRCLACARYF--IDSTNLKTHFRSKDHKKRLKQL   82 (124)
T ss_dssp             CSEETTTTEEC--SSHHHHHHHTTCHHHHHHHHHH
T ss_pred             ceEcccCcchh--CCHHHHHHHHhhhhhhHHHHHh
Confidence            69999999999  4678889999999999988875

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=94.97  E-value=0.011  Score=40.88  Aligned_cols=36  Identities=19%  Similarity=0.339  Sum_probs=30.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQ   40 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~   40 (197)
                      +--|.+||+.+. ...++ .+|+-.++|+.+|++.++.
T Consensus        13 ~~eC~lC~vkYs-~r~sl-qDHIFs~qHI~~vk~~v~~   48 (55)
T 2yrk_A           13 KPECTLCGVKYS-ARLSI-RDHIFSKQHISKVRETVGS   48 (55)
T ss_dssp             CSCCTTTTCCCC-SSSCH-HHHHTSHHHHHHHHHTTCS
T ss_pred             CccccccCcccc-cccch-hhhhccHHHHHHHHHHHHh
Confidence            457999999995 44665 9999999999999987754

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=92.51  E-value=0.078  Score=27.57  Aligned_cols=21  Identities=24%  Similarity=0.570  Sum_probs=16.4

Q ss_pred             ccccCCcceeccCCHHHHHHhhc
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      |-|++|++.|  .+.+.++.|..
T Consensus         2 ~~C~~C~k~f--~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSF--VEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBC--SSHHHHHHHGG
T ss_pred             ccCCCCCCcC--CCHHHHHHHHH
Confidence            7899999999  45566777863

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.01  E-value=0.079  Score=29.78  Aligned_cols=22  Identities=18%  Similarity=0.523  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus         9 ~~~C~~C~k~f~--~~~~l~~H~~   30 (36)
T 2els_A            9 IFTCEYCNKVFK--FKHSLQAHLR   30 (36)
T ss_dssp             CEECTTTCCEES--SHHHHHHHHH
T ss_pred             CEECCCCCceeC--CHHHHHHHHH
Confidence            588999999994  4566677753

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=92.00  E-value=0.092  Score=29.21  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus         7 ~~~C~~C~k~f~--~~~~l~~H~~   28 (35)
T 1srk_A            7 PFVCRICLSAFT--TKANCARHLK   28 (35)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHG
T ss_pred             CeeCCCCCcccC--CHHHHHHHHH
Confidence            478999999994  5666777864

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.67  E-value=0.097  Score=29.39  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|  .+.+.++.|.
T Consensus         9 ~~~C~~C~k~f--~~~~~l~~H~   29 (36)
T 2elq_A            9 PFKCSLCEYAT--RSKSNLKAHM   29 (36)
T ss_dssp             SEECSSSSCEE--SCHHHHHHHH
T ss_pred             CccCCCCCchh--CCHHHHHHHH
Confidence            47899999999  4566677775

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=91.64  E-value=0.083  Score=33.65  Aligned_cols=20  Identities=25%  Similarity=0.579  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQH   24 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H   24 (197)
                      ++||+-||+.|  .+...++.|
T Consensus         8 ~~~C~~C~IsF--~~l~ty~aH   27 (36)
T 1fu9_A            8 KKYCSTCDISF--NYVKTYLAH   27 (36)
T ss_dssp             CSEETTTTEEC--SSHHHHHHH
T ss_pred             cCeecccccee--hhhHHHhhh
Confidence            68999999999  567777776

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=91.45  E-value=0.11  Score=29.31  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=16.9

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|.  ..+.++.|..
T Consensus        11 ~~~C~~C~k~f~--~~~~l~~H~~   32 (37)
T 1p7a_A           11 PFQCPDCDRSFS--RSDHLALHRK   32 (37)
T ss_dssp             SBCCTTTCCCBS--SHHHHHHHHG
T ss_pred             CccCCCCCcccC--cHHHHHHHHH
Confidence            588999999994  5566677753

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.44  E-value=0.11  Score=27.27  Aligned_cols=21  Identities=19%  Similarity=0.363  Sum_probs=16.3

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|  ...+.++.|.
T Consensus         3 ~~~C~~C~k~f--~~~~~l~~H~   23 (27)
T 2kvh_A            3 PFSCSLCPQRS--RDFSAMTKHL   23 (27)
T ss_dssp             CEECSSSSCEE--SSHHHHHHHH
T ss_pred             CccCCCcChhh--CCHHHHHHHH
Confidence            47899999999  4566667775

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=91.42  E-value=0.11  Score=28.75  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|.  ..+.++.|..
T Consensus         7 ~~~C~~C~k~f~--~~~~L~~H~~   28 (35)
T 2elx_A            7 GYVCALCLKKFV--SSIRLRSHIR   28 (35)
T ss_dssp             SEECSSSCCEES--SHHHHHHHHH
T ss_pred             CeECCCCcchhC--CHHHHHHHHH
Confidence            488999999994  5566677753

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.33  E-value=0.092  Score=29.58  Aligned_cols=22  Identities=23%  Similarity=0.534  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus         9 ~~~C~~C~k~f--~~~~~l~~H~~   30 (37)
T 2elo_A            9 SYSCPVCEKSF--SEDRLIKSHIK   30 (37)
T ss_dssp             CCEETTTTEEC--SSHHHHHHHHH
T ss_pred             CcCCCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  45666777763

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.33  E-value=0.12  Score=27.09  Aligned_cols=22  Identities=18%  Similarity=0.431  Sum_probs=16.8

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus         3 ~~~C~~C~k~f~--~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFS--LKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEES--CHHHHHHHHT
T ss_pred             CccCCCCCcccC--CHHHHHHHHH
Confidence            478999999994  5566677753

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=91.33  E-value=0.11  Score=27.20  Aligned_cols=21  Identities=33%  Similarity=0.898  Sum_probs=16.0

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  ..+.++.|.
T Consensus         3 ~~~C~~C~~~f~--~~~~l~~H~   23 (30)
T 2m0d_A            3 PYQCDYCGRSFS--DPTSKMRHL   23 (30)
T ss_dssp             CEECTTTCCEES--CHHHHHHHH
T ss_pred             CccCCCCCcccC--CHHHHHHHH
Confidence            478999999993  556667775

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.28  E-value=0.11  Score=28.95  Aligned_cols=21  Identities=19%  Similarity=0.256  Sum_probs=16.5

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|  ...+.++.|.
T Consensus         9 ~~~C~~C~k~f--~~~~~l~~H~   29 (36)
T 2elt_A            9 PYKCPQCSYAS--AIKANLNVHL   29 (36)
T ss_dssp             SEECSSSSCEE--SSHHHHHHHH
T ss_pred             CCCCCCCCccc--CCHHHHHHHH
Confidence            48899999999  4556667776

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=91.21  E-value=0.11  Score=27.24  Aligned_cols=22  Identities=18%  Similarity=0.499  Sum_probs=16.5

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus         2 ~~~C~~C~~~f~--~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFA--RQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCS--SHHHHHHHHH
T ss_pred             CeECCCCCcccC--CHHHHHHHHH
Confidence            378999999994  5566677753

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=91.15  E-value=0.12  Score=27.39  Aligned_cols=22  Identities=23%  Similarity=0.381  Sum_probs=16.8

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus         3 ~~~C~~C~k~f~--~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCP--SLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEES--CHHHHHHHHT
T ss_pred             CcCCCCCCcccC--CHHHHHHHHH
Confidence            478999999994  5566777753

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=91.13  E-value=0.11  Score=27.36  Aligned_cols=22  Identities=14%  Similarity=0.323  Sum_probs=16.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus         2 ~~~C~~C~k~f~--~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFM--RSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEES--CSHHHHHHHT
T ss_pred             CccCCCCCchhC--CHHHHHHHHH
Confidence            378999999994  4455677764

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.13  E-value=0.12  Score=28.96  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus         9 ~~~C~~C~k~f~--~~~~l~~H~~   30 (36)
T 2elv_A            9 LYDCHICERKFK--NELDRDRHML   30 (36)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHT
T ss_pred             CeECCCCCCccC--CHHHHHHHHH
Confidence            478999999994  5666777864

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=90.67  E-value=0.14  Score=26.66  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=16.1

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|  .+.+.++.|.
T Consensus         2 ~~~C~~C~k~f--~~~~~l~~H~   22 (29)
T 2m0f_A            2 PLKCRECGKQF--TTSGNLKRHL   22 (29)
T ss_dssp             CEECTTTSCEE--SCHHHHHHHH
T ss_pred             CccCCCCCCcc--CChhHHHHHH
Confidence            47899999999  3556667775

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=90.51  E-value=0.11  Score=27.19  Aligned_cols=22  Identities=32%  Similarity=0.599  Sum_probs=16.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus         2 ~~~C~~C~k~f~--~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQYCEFRSA--DSSNLKTHIK   23 (30)
T ss_dssp             CCCCSSSSCCCS--CSHHHHHHHH
T ss_pred             CccCCCCCCccC--CHHHHHHHHH
Confidence            378999999994  4455677753

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.15  E-value=0.13  Score=29.03  Aligned_cols=21  Identities=33%  Similarity=0.657  Sum_probs=15.9

Q ss_pred             cccccCCcceeccCCH-HHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSP-SVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~-SvRk~H~   25 (197)
                      .|.|++|++.|.  .. +.++.|.
T Consensus         9 ~~~C~~C~k~f~--~~~~~L~~H~   30 (37)
T 2elp_A            9 AMKCPYCDFYFM--KNGSDLQRHI   30 (37)
T ss_dssp             CEECSSSSCEEC--SSCHHHHHHH
T ss_pred             CeECCCCChhhc--cCHHHHHHHH
Confidence            488999999994  44 5567775

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.74  E-value=0.15  Score=29.13  Aligned_cols=20  Identities=30%  Similarity=0.657  Sum_probs=15.6

Q ss_pred             cccccCCcceeccCCHHHHHHh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQH   24 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H   24 (197)
                      .|.|++|++.|.  ..+.++.|
T Consensus         9 ~~~C~~C~k~f~--~~~~L~~H   28 (37)
T 2elm_A            9 LYYCSQCHYSSI--TKNCLKRH   28 (37)
T ss_dssp             EEECSSSSCEEE--CHHHHHHH
T ss_pred             CeECCCCCcccC--CHHHHHHH
Confidence            378999999994  45666777

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=89.72  E-value=0.16  Score=28.41  Aligned_cols=22  Identities=14%  Similarity=0.397  Sum_probs=16.8

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus         2 p~~C~~C~k~F~--~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFM--RSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCS--SHHHHHHHHH
T ss_pred             cccCCCCCchhC--CHHHHHHHHH
Confidence            378999999994  5666777863

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.69  E-value=0.17  Score=28.14  Aligned_cols=21  Identities=29%  Similarity=0.567  Sum_probs=16.3

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|  .+.+.++.|.
T Consensus         9 ~~~C~~C~k~f--~~~~~l~~H~   29 (36)
T 2elr_A            9 THLCDMCGKKF--KSKGTLKSHK   29 (36)
T ss_dssp             SCBCTTTCCBC--SSHHHHHHHH
T ss_pred             CeecCcCCCCc--CchHHHHHHH
Confidence            58899999999  4556667775

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.69  E-value=0.19  Score=29.76  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2emi_A           12 HYECSECGKAFI--QKSTLSMHQR   33 (46)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHG
T ss_pred             CCCCCCCCcccC--CHHHHHHHHh
Confidence            488999999994  5666777864

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=89.17  E-value=0.065  Score=28.42  Aligned_cols=22  Identities=23%  Similarity=0.561  Sum_probs=15.9

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus         3 ~~~C~~C~k~f~--~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFA--DPGALQRHVR   24 (30)
Confidence            478999999994  3444577753

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.57  E-value=0.2  Score=29.60  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (44)
T 2epv_A           12 PYECNECGKAF--IWKSLLIVHER   33 (44)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHG
T ss_pred             CeECCCCCccc--CchHHHHHHHh
Confidence            48899999999  45666788864

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=89.20  E-value=0.19  Score=30.84  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|.  ..+.++.|..
T Consensus         7 p~~C~~C~k~F~--~~~~L~~H~~   28 (48)
T 3iuf_A            7 PYACDICGKRYK--NRPGLSYHYA   28 (48)
T ss_dssp             CEECTTTCCEES--SHHHHHHHHH
T ss_pred             CEECCCcCcccC--CHHHHHHHhh
Confidence            488999999994  4566677753

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.17  E-value=0.24  Score=28.62  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        10 ~~~C~~C~k~f--~~~~~L~~H~~   31 (41)
T 2ept_A           10 VYECQECGKSF--RQKGSLTLHER   31 (41)
T ss_dssp             CEECSSSCCEE--SSHHHHHHHGG
T ss_pred             CeECCCCCCCc--CCHHHHHHHHH
Confidence            47899999999  45666788864

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.11  E-value=0.26  Score=29.15  Aligned_cols=21  Identities=14%  Similarity=0.320  Sum_probs=16.1

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|.|++|++.|.  ..+.++.|.
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~   32 (46)
T 2en3_A           12 PFQCKECGMNFS--WSCSLFKHL   32 (46)
T ss_dssp             SEECSSSCCEES--SSHHHHHHH
T ss_pred             CeeCcccChhhC--CHHHHHHHH
Confidence            478999999994  445567776

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=89.09  E-value=0.16  Score=26.35  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=15.4

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  ..+.++.|.
T Consensus         2 ~~~C~~C~~~f~--~~~~l~~H~   22 (29)
T 2m0e_A            2 EHKCPHCDKKFN--QVGNLKAHL   22 (29)
T ss_dssp             CCCCSSCCCCCC--TTTHHHHHH
T ss_pred             CCcCCCCCcccC--CHHHHHHHH
Confidence            378999999994  344457776

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=89.08  E-value=0.2  Score=28.69  Aligned_cols=22  Identities=23%  Similarity=0.540  Sum_probs=16.9

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus         6 ~~~C~~C~k~f--~~~~~L~~H~~   27 (39)
T 1njq_A            6 SYTCSFCKREF--RSAQALGGHMN   27 (39)
T ss_dssp             SEECTTTCCEE--SSHHHHHHHHH
T ss_pred             ceECCCCCccc--CCHHHHHHHHH
Confidence            47899999999  45666777753

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.07  E-value=0.2  Score=28.98  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        11 ~~~C~~C~k~f--~~~~~L~~H~~   32 (42)
T 2en2_A           11 PYKCETCGARF--VQVAHLRAHVL   32 (42)
T ss_dssp             SEECTTTCCEE--SSHHHHHHHTH
T ss_pred             CEeCCCcChhh--CCHHHHHHHHH
Confidence            48899999999  45666788864

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.02  E-value=0.22  Score=28.95  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        11 ~~~C~~C~k~f--~~~~~L~~H~~   32 (42)
T 2eos_A           11 PYPCEICGTRF--RHLQTLKSHLR   32 (42)
T ss_dssp             CBCCSSSCCCB--SSHHHHHHHTT
T ss_pred             CEECCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  45666788864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.01  E-value=0.21  Score=29.59  Aligned_cols=21  Identities=24%  Similarity=0.517  Sum_probs=16.8

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|  .+.+.++.|.
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~   32 (46)
T 2em3_A           12 PYECKVCSKAF--TQKAHLAQHQ   32 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHH
T ss_pred             CeECCCCCccc--CCHHHHHHHH
Confidence            48899999999  4566677776

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=88.65  E-value=0.076  Score=28.21  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=15.9

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus         2 ~~~C~~C~k~f~--~~~~l~~H~~   23 (29)
T 2lvt_A            2 PCQCVMCGKAFT--QASSLIAHVR   23 (29)
Confidence            378999999994  3444577763

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.96  E-value=0.21  Score=29.62  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2emg_A           12 PFICSECGKVFT--HKTNLIIHQK   33 (46)
T ss_dssp             SCBCTTTCCBCS--SHHHHHHHHT
T ss_pred             CEECCccCcccC--CHHHHHHHHH
Confidence            488999999994  5666788864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.94  E-value=0.22  Score=29.55  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2ytp_A           12 HYECSECGKAF--ARKSTLIMHQR   33 (46)
T ss_dssp             CEECSSSCCEE--SSHHHHHHHHT
T ss_pred             CeECCcCCccc--CCHHHHHHHHH
Confidence            47899999999  45666788864

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.91  E-value=0.22  Score=29.73  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eon_A           12 PYKCQVCGKAF--RVSSHLVQHHS   33 (46)
T ss_dssp             SCBCSSSCCBC--SSHHHHHHHTT
T ss_pred             ccCCCCCCccc--CcHHHHHHHHH
Confidence            48899999999  45666788864

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=88.91  E-value=0.22  Score=28.72  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=16.5

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  +.+.++.|.
T Consensus        11 ~~~C~~C~k~f~--~~~~l~~H~   31 (42)
T 2epc_A           11 PYLCGQCGKSFT--QRGSLAVHQ   31 (42)
T ss_dssp             CEECSSSCCEES--SHHHHHHHH
T ss_pred             CeECCCCCcccC--CHHHHHHHh
Confidence            488999999994  556667775

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=88.88  E-value=0.24  Score=28.62  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        10 ~~~C~~C~k~f--~~~~~L~~H~~   31 (42)
T 2el5_A           10 PYECSECGKAF--NRKDQLISHQR   31 (42)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHG
T ss_pred             CccCCCcChhh--CCHHHHHHHHH
Confidence            47899999999  45666777763

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.82  E-value=0.2  Score=29.90  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2eom_A           12 GHRCSDCGKFF--LQASNFIQHRR   33 (46)
T ss_dssp             SCCCSSSCCCC--SSHHHHHHHHH
T ss_pred             CcCCCCCCCee--CChHHHHHHHH
Confidence            58899999999  45666777753

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.75  E-value=0.22  Score=29.47  Aligned_cols=22  Identities=14%  Similarity=0.353  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (45)
T 2epu_A           12 PFECTHCGKSF--RAKGNLVTHQR   33 (45)
T ss_dssp             SEEETTTTEEE--SSHHHHHHHHT
T ss_pred             CccCCCCCCcc--CChHHHHHHHH
Confidence            47899999999  45666777864

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.72  E-value=0.24  Score=29.24  Aligned_cols=22  Identities=23%  Similarity=0.475  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2yrj_A           12 PYRCGECGKAFA--QKANLTQHQR   33 (46)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHT
T ss_pred             CeECCCCCCccC--CHHHHHHHHH
Confidence            488999999994  5666777863

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.70  E-value=0.23  Score=28.95  Aligned_cols=21  Identities=24%  Similarity=0.512  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|  .+.+.++.|.
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~   32 (44)
T 2eof_A           12 PYECNECQKAF--NTKSNLMVHQ   32 (44)
T ss_dssp             SEECTTTCCEE--SCHHHHHHHH
T ss_pred             CeECCCCCccc--CCHhHHHHHH
Confidence            48899999999  4566677776

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=88.38  E-value=0.082  Score=27.54  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=15.8

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus         2 p~~C~~C~k~f~--~~~~l~~H~~   23 (26)
T 2lvu_A            2 PYVCERCGKRFV--QSSQLANHIR   23 (26)
Confidence            378999999994  3455677753

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.58  E-value=0.27  Score=28.99  Aligned_cols=22  Identities=23%  Similarity=0.467  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2yts_A           12 PYICNECGKSF--IQKSHLNRHRR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHGG
T ss_pred             CEECCCCChhh--CChHHHHHHHH
Confidence            47899999999  45666788864

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.52  E-value=0.23  Score=29.31  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eor_A           12 PYNCEECGKAF--IHDSQLQEHQR   33 (46)
T ss_dssp             SEECTTTCCEE--SSHHHHHHHHH
T ss_pred             CccCCCCCCCc--CCHHHHHHHHH
Confidence            48899999999  45666777863

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.40  E-value=0.22  Score=29.59  Aligned_cols=22  Identities=18%  Similarity=0.317  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2emz_A           12 PFKCNECGKGF--GRRSHLAGHLR   33 (46)
T ss_dssp             SCCCSSSCCCC--SSHHHHHHHHH
T ss_pred             CeECCCCCccc--CCHHHHHHHHH
Confidence            48899999999  45666777764

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.38  E-value=0.22  Score=29.58  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=16.4

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  ..+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (46)
T 2eoh_A           12 PYECKECRKTFI--QIGHLNQHK   32 (46)
T ss_dssp             SCCCSSSCCCCS--SHHHHHHHH
T ss_pred             CcCCCCcCchhC--CHHHHHHHH
Confidence            488999999994  556667775

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.34  E-value=0.24  Score=29.17  Aligned_cols=21  Identities=24%  Similarity=0.727  Sum_probs=16.5

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|.|++|++.|  ...+.++.|.
T Consensus        10 ~~~C~~C~k~f--~~~~~L~~H~   30 (43)
T 2yrm_A           10 AFFCNECDCRF--SEEASLKRHT   30 (43)
T ss_dssp             CBCCSSSCCCB--SSHHHHHHHH
T ss_pred             CEECCCCCCee--CChHHHHHHH
Confidence            48899999999  4566667775

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.23  E-value=0.23  Score=29.47  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2en9_A           12 LFKCNECKKTFT--QSSSLTVHQR   33 (46)
T ss_dssp             CCBCTTTCCBCS--SHHHHHHHHH
T ss_pred             CEECCccCcccC--CHHHHHHHHH
Confidence            488999999994  5666777763

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.21  E-value=0.26  Score=29.18  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2enf_A           12 PYKCNECGKVFT--QNSHLVRHRG   33 (46)
T ss_dssp             SCBCSSSCCBCS--SHHHHHHHHT
T ss_pred             CeECCCCCcccC--CHHHHHHHHH
Confidence            488999999994  5666777863

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.18  E-value=0.24  Score=28.97  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (44)
T 2eoj_A           12 PYECCECGKVF--SRKDQLVSHQK   33 (44)
T ss_dssp             SCEETTTTEEC--SSHHHHHHHHT
T ss_pred             CeeCCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  45666777764

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.14  E-value=0.27  Score=29.08  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eq2_A           12 PYQCNECGKAF--SQTSKLARHQR   33 (46)
T ss_dssp             SSSCCSSCCCC--SSHHHHHHHGG
T ss_pred             CeECCCCCccc--CCHHHHHHHHH
Confidence            48899999999  45666788863

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.13  E-value=0.26  Score=29.26  Aligned_cols=22  Identities=14%  Similarity=0.277  Sum_probs=16.8

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2em2_A           12 PFKCKECGKAFR--QNIHLASHLR   33 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHHH
T ss_pred             CEECCcCCchhC--CHHHHHHHHH
Confidence            488999999994  5566677753

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.09  E-value=0.31  Score=28.91  Aligned_cols=22  Identities=18%  Similarity=0.424  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2emf_A           12 HFECTECGKAF--TRKSTLSMHQK   33 (46)
T ss_dssp             CEECSSSCCEE--SCHHHHHHHGG
T ss_pred             CeECCCCCchh--CCHHHHHHHHH
Confidence            48899999999  45677788864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=88.07  E-value=0.26  Score=29.23  Aligned_cols=22  Identities=18%  Similarity=0.382  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2emj_A           12 PFECAECGKSF--SISSQLATHQR   33 (46)
T ss_dssp             SEECSSSSCEE--SSHHHHHHHHH
T ss_pred             CEECCCCCccc--CCHHHHHHHHH
Confidence            48899999999  45666777763

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.05  E-value=0.26  Score=29.02  Aligned_cols=21  Identities=19%  Similarity=0.431  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|  .+.+.++.|.
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~   32 (46)
T 2ytf_A           12 PFECSECQKAF--NTKSNLIVHQ   32 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHH
T ss_pred             CcCCCCCCccc--CCHHHHHHHH
Confidence            48899999999  4566667775

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=88.02  E-value=0.31  Score=28.72  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2el4_A           12 PYGCSQCAKTFS--LKSQLIVHQR   33 (46)
T ss_dssp             SEECSSSSCEES--SHHHHHHHGG
T ss_pred             ceECCCCCchhC--CHHHHHHHHH
Confidence            488999999994  5666788864

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=88.01  E-value=0.22  Score=26.28  Aligned_cols=20  Identities=25%  Similarity=0.614  Sum_probs=15.1

Q ss_pred             cccccCCcceeccCCHHHHHHh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQH   24 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H   24 (197)
                      .|-|+.|++.|.  +.+.++.|
T Consensus         2 ~~~C~~C~k~f~--~~~~l~~H   21 (30)
T 1paa_A            2 AYACGLCNRAFT--RRDLLIRH   21 (30)
T ss_dssp             CSBCTTTCCBCS--SSHHHHHH
T ss_pred             CcCCcccCcccC--ChHHHHHH
Confidence            378999999994  44556777

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.00  E-value=0.31  Score=28.54  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (44)
T 2emb_A           12 RYECSKCQATF--NLRKHLIQHQK   33 (44)
T ss_dssp             SEECTTTCCEE--SCHHHHHHHGG
T ss_pred             CeECCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  45666788864

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.00  E-value=0.3  Score=28.81  Aligned_cols=22  Identities=27%  Similarity=0.646  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eme_A           12 PYVCDYCGKAF--GLSAELVRHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHG
T ss_pred             CeECCCCChhh--CCHHHHHHHHH
Confidence            48899999999  45677788864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.95  E-value=0.27  Score=28.98  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ep1_A           12 PYECSDCGKSF--IKKSQLHVHQR   33 (46)
T ss_dssp             SSCCSSSCCCC--SSHHHHHHHHG
T ss_pred             CcCCCCCCchh--CCHHHHHHHHH
Confidence            48899999999  45666788864

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.90  E-value=0.3  Score=28.94  Aligned_cols=22  Identities=18%  Similarity=0.457  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2yth_A           12 PFQCEECGKRF--TQNSHLHSHQR   33 (46)
T ss_dssp             SBCCSSSCCCB--SSHHHHHHHGG
T ss_pred             CCCCCCCCccc--CCHHHHHHHHH
Confidence            48899999999  45666788864

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.87  E-value=0.24  Score=29.39  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=16.8

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2enh_A           12 PYECDVCRKAFS--HHASLTQHQR   33 (46)
T ss_dssp             SCBCTTTCCBCS--SSHHHHHHGG
T ss_pred             CcCCCCcCchhC--CHHHHHHHHH
Confidence            488999999994  4455678864

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.86  E-value=0.29  Score=28.93  Aligned_cols=22  Identities=27%  Similarity=0.425  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ep3_A           12 PYRCAECGKAFT--DRSNLFTHQK   33 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHHT
T ss_pred             CeECCCCCchhC--CHHHHHHHHH
Confidence            488999999994  5666777863

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.86  E-value=0.25  Score=29.12  Aligned_cols=22  Identities=27%  Similarity=0.523  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eq3_A           12 PYECNQCGKAF--SVRSSLTTHQA   33 (46)
T ss_dssp             SSEETTTTEEC--SSHHHHHHHHT
T ss_pred             CeECCCCChhh--CCHHHHHHHHH
Confidence            48899999999  45666777863

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.81  E-value=0.28  Score=29.10  Aligned_cols=22  Identities=27%  Similarity=0.566  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2em6_A           12 CYKCDVCGKEFS--QSSHLQTHQR   33 (46)
T ss_dssp             CCBCSSSCCBCS--SHHHHHHHHT
T ss_pred             CeECCCCCcccC--CHHHHHHHHH
Confidence            488999999994  5666777763

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.80  E-value=0.27  Score=29.11  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2yti_A           12 PYKCNECGKVFT--QNSHLARHRG   33 (46)
T ss_dssp             TTCCSSSCCCCS--SHHHHHHHHT
T ss_pred             CeECCCCCcccC--ChhHHHHHhH
Confidence            488999999994  5666777763

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.77  E-value=0.28  Score=29.10  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=16.9

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2em4_A           12 PYECIECGKAFK--TKSSLICHRR   33 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHHH
T ss_pred             CcCCCCCCCccC--CHHHHHHHHH
Confidence            488999999994  5566777753

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.77  E-value=0.26  Score=29.17  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eq1_A           12 PYKCNECGKAF--RAHSNLTTHQV   33 (46)
T ss_dssp             CCCCTTTTCCC--SSHHHHHHHHT
T ss_pred             CeECCcCChhh--CCHHHHHHHHH
Confidence            58899999999  45666777864

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.70  E-value=0.27  Score=28.32  Aligned_cols=22  Identities=23%  Similarity=0.465  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        10 ~~~C~~C~k~f~--~~~~L~~H~~   31 (42)
T 2yte_A           10 PYSCAECKETFS--DNNRLVQHQK   31 (42)
T ss_dssp             SCBCTTTCCBCS--SHHHHHHHHH
T ss_pred             CeECCCCCCccC--CHHHHHHHHH
Confidence            488999999994  5566677753

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.68  E-value=0.28  Score=28.24  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        11 ~~~C~~C~k~f~--~~~~L~~H~~   32 (42)
T 2ytb_A           11 PYRCDQCGKAFS--QKGSLIVHIR   32 (42)
T ss_dssp             SBCCTTTTCCBS--SHHHHHTTGG
T ss_pred             CeeCCCccchhC--CHHHHHHHHH
Confidence            588999999994  5666788864

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.60  E-value=0.26  Score=29.00  Aligned_cols=21  Identities=19%  Similarity=0.412  Sum_probs=16.3

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|.|++|++.|  ...+.++.|.
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~   32 (44)
T 2eou_A           12 TSECQECGKIF--RHSSLLIEHQ   32 (44)
T ss_dssp             CCCCTTTCCCC--SSHHHHHHHH
T ss_pred             CeECCCCCccc--CCHHHHHHHH
Confidence            48899999999  4556667775

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.57  E-value=0.29  Score=28.91  Aligned_cols=21  Identities=29%  Similarity=0.475  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  +.+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (46)
T 2ytj_A           12 PYICAECGKAFT--IRSNLIKHQ   32 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHH
T ss_pred             CeECCCCChhhC--CHHHHHHHH
Confidence            488999999994  566677776

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.49  E-value=0.28  Score=28.55  Aligned_cols=22  Identities=27%  Similarity=0.461  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (44)
T 2en7_A           12 PYVCNECGKAF--RSKSYLIIHTR   33 (44)
T ss_dssp             SSCCTTTCCCC--SSHHHHHHHHT
T ss_pred             CeECCCCCCcc--CCHHHHHHHhh
Confidence            48899999999  45666777863

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=87.41  E-value=0.28  Score=29.87  Aligned_cols=21  Identities=33%  Similarity=0.679  Sum_probs=16.9

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|.|+.|++.|  ...+.++.|.
T Consensus         8 p~~C~~CgK~F--~~~s~L~~H~   28 (36)
T 1fv5_A            8 RFMCLPCGIAF--SSPSTLEAHQ   28 (36)
T ss_dssp             CCEETTTTEEC--SCHHHHHHHH
T ss_pred             CeECCCCCCcc--CCHhHccCcC
Confidence            48899999999  4566677776

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.36  E-value=0.28  Score=29.08  Aligned_cols=21  Identities=24%  Similarity=0.490  Sum_probs=16.5

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  ..+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (46)
T 2eoz_A           12 PYSCNVCGKAFV--LSAHLNQHL   32 (46)
T ss_dssp             SEEETTTTEEES--SHHHHHHHH
T ss_pred             CeECcccChhhC--CHHHHHHHH
Confidence            488999999994  566667775

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.32  E-value=0.31  Score=28.81  Aligned_cols=22  Identities=18%  Similarity=0.368  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2emy_A           12 PYECHECGKAFS--RKYQLISHQR   33 (46)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHH
T ss_pred             CcCCCCCCcccC--cHHHHHHHHH
Confidence            488999999994  5666777863

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.32  E-value=0.31  Score=28.74  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|  ...+.++.|.
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~   32 (46)
T 2eow_A           12 PYKCNECGKAF--RARSSLAIHQ   32 (46)
T ss_dssp             CEECTTSCCEE--SSHHHHHHHH
T ss_pred             CeeccccCChh--cCHHHHHHHH
Confidence            47899999999  4566677776

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.30  E-value=0.3  Score=29.00  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ytt_A           12 PYQCSECGKSF--SGSYRLTQHWI   33 (46)
T ss_dssp             TTCCSSSCCCC--SSHHHHHHHHT
T ss_pred             CeeCCCCCccc--CCHHHHHHHHH
Confidence            58899999999  45666788864

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.29  E-value=0.33  Score=28.79  Aligned_cols=22  Identities=23%  Similarity=0.295  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2em5_A           12 SHQCHECGRGF--TLKSHLNQHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHT
T ss_pred             CeECCcCCCcc--CCHHHHHHHHH
Confidence            48899999999  45677788863

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.25  E-value=0.33  Score=28.67  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ep0_A           12 PYKCDVCHKSF--RYGSSLTVHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHT
T ss_pred             CeeCcccCccc--CChHHHHHHHH
Confidence            48899999999  45666788864

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=87.12  E-value=0.36  Score=28.63  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2el6_A           12 PYKCSQCEKSFS--GKLRLLVHQR   33 (46)
T ss_dssp             SEECSSSSCEES--SHHHHHHHHG
T ss_pred             CeECCCCCcccC--CHHHHHHHHH
Confidence            488999999994  5666777864

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=87.02  E-value=0.38  Score=28.30  Aligned_cols=22  Identities=23%  Similarity=0.437  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2em9_A           12 PYNCKECGKSF--RWASCLLKHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHGG
T ss_pred             CeECCcccccc--CChHHHHHHHH
Confidence            48899999999  45666788864

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.97  E-value=0.37  Score=28.47  Aligned_cols=22  Identities=18%  Similarity=0.421  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eml_A           12 PYECSVCGKAF--SHRQSLSVHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHG
T ss_pred             CeeCCCcCCcc--CCHHHHHHHHH
Confidence            47899999999  45666788864

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.96  E-value=0.33  Score=28.66  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ysp_A           12 PYKCEKCGKGY--NSKFNLDMHQK   33 (46)
T ss_dssp             SEEETTTTEEE--SCHHHHHHHHT
T ss_pred             CeECCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  45666788864

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.94  E-value=0.34  Score=28.55  Aligned_cols=22  Identities=18%  Similarity=0.274  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2emm_A           12 PHKCNECGKSF--IQSAHLIQHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHH
T ss_pred             CeeCCCCChhh--CCHHHHHHHHH
Confidence            48899999999  45666777763

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.90  E-value=0.34  Score=28.73  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  ..+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (46)
T 2yto_A           12 PYKCSDCGKAFT--RKSGLHIHQ   32 (46)
T ss_dssp             CEECSSSCCEES--SHHHHHHHH
T ss_pred             CEECcccCCccC--CHhHHHHHH
Confidence            488999999994  556677775

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.87  E-value=0.36  Score=28.52  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ene_A           12 PYKCNECGKVF--RHNSYLSRHQR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHT
T ss_pred             CeECCCCCchh--CChHHHHHHHh
Confidence            48899999999  45666788864

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.86  E-value=0.34  Score=28.72  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2eoo_A           12 PYGCNECGKNF--GRHSHLIEHLK   33 (46)
T ss_dssp             CEECSSSCCEE--SSHHHHHHHHH
T ss_pred             CEEccccCccc--CCHHHHHHHHH
Confidence            48899999999  45666777863

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=86.86  E-value=0.32  Score=30.13  Aligned_cols=22  Identities=14%  Similarity=0.289  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        24 ~~~C~~C~k~f--~~~~~L~~H~~   45 (54)
T 1yui_A           24 PATCPICYAVI--RQSRNLRRHLE   45 (54)
T ss_dssp             CEECTTTCCEE--SSHHHHHHHHH
T ss_pred             CccCCCCCccc--CCHHHHHHHHH
Confidence            47899999999  45666777753

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.77  E-value=0.29  Score=28.66  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=15.9

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  ..+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (44)
T 2yu5_A           12 PFKCSKCDRVFT--QRNYLVQHE   32 (44)
T ss_dssp             SEECSSSSCEES--SSHHHHHHH
T ss_pred             CeECCCCCchhC--CHHHHHHHh
Confidence            488999999994  345567775

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=86.76  E-value=0.4  Score=24.91  Aligned_cols=22  Identities=18%  Similarity=0.502  Sum_probs=16.8

Q ss_pred             ccccc--CCcceeccCCHHHHHHhhc
Q 029213            3 RYYCD--YCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCd--YCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|+  .|++.|  .+.+.++.|..
T Consensus         2 ~~~C~~~~C~k~f--~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VYVCHFENCGRSF--NDRRKLNRHKK   25 (29)
T ss_dssp             CEEECSTTTCEEE--SSHHHHHHHHG
T ss_pred             CCCCcCCcCcCcc--CCHHHHHHHHH
Confidence            37899  999999  45666677764

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.71  E-value=0.36  Score=28.52  Aligned_cols=22  Identities=23%  Similarity=0.452  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2eq0_A           12 PYKCHECGKVF--RRNSHLARHQL   33 (46)
T ss_dssp             CEECTTTCCEE--SSHHHHHHHHT
T ss_pred             CeECCCCCchh--CCHHHHHHHHH
Confidence            48899999999  45666788864

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=86.71  E-value=0.35  Score=28.69  Aligned_cols=22  Identities=23%  Similarity=0.452  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2emk_A           12 PYECKECGKAF--SQTTHLIQHQR   33 (46)
T ss_dssp             SCBCSSSCCBC--SCHHHHHHHHH
T ss_pred             ceECCCCCchh--CCHHHHHHHHH
Confidence            48899999999  45666777863

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=86.68  E-value=0.37  Score=29.00  Aligned_cols=22  Identities=14%  Similarity=0.378  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (48)
T 2epr_A           12 QVACEICGKIF--RDVYHLNRHKL   33 (48)
T ss_dssp             SEEETTTTEEE--SSHHHHHHHGG
T ss_pred             CeeCCCCCccc--CCHHHHHHHHH
Confidence            58899999999  45666788864

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.60  E-value=0.37  Score=28.41  Aligned_cols=22  Identities=18%  Similarity=0.240  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (47)
T 2epx_A           12 PYECIECGKAF--IQNTSLIRHWR   33 (47)
T ss_dssp             SBCCSSSCCCB--SSHHHHHHHHT
T ss_pred             CEECCccCchh--CChHHHHHHhH
Confidence            48899999999  45666787864

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.59  E-value=0.35  Score=28.46  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2eop_A           12 PHECRECGKSFS--FNSQLIVHQR   33 (46)
T ss_dssp             SCBCTTTCCBCS--SHHHHHHHHT
T ss_pred             CeeCCCCCchhC--CHHHHHHHHH
Confidence            488999999994  5666777864

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.59  E-value=0.4  Score=28.41  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2elz_A           12 PYKCEDCGKGY--NRRLNLDMHQR   33 (46)
T ss_dssp             SCBCSSSCCBC--SSHHHHHHHGG
T ss_pred             CeeCcccCchh--CCHHHHHHHHH
Confidence            48899999999  45666788864

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.57  E-value=0.35  Score=28.48  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=16.8

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|  .+.+.++.|.
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~   32 (46)
T 2eov_A           12 PYKCSDCGKSF--TWKSRLRIHQ   32 (46)
T ss_dssp             SCBCSSSCCBC--SSHHHHHHHH
T ss_pred             CccCCccChhh--CCHHHHHHHH
Confidence            48899999999  4566678886

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.56  E-value=0.37  Score=28.20  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        10 ~~~C~~C~k~f--~~~~~L~~H~~   31 (44)
T 2emx_A           10 PFGCSCCEKAF--SSKSYLLVHQQ   31 (44)
T ss_dssp             CEECSSSSCEE--SSHHHHHHHHH
T ss_pred             CccCCCCCccc--CCHHHHHHHHH
Confidence            48899999999  45666777863

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.53  E-value=0.36  Score=28.49  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ep2_A           12 PYECSICGKSF--TKKSQLHVHQQ   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHH
T ss_pred             CcCCCCCCccc--CCHHHHHHHHH
Confidence            48899999999  45666787863

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.52  E-value=0.36  Score=28.58  Aligned_cols=22  Identities=18%  Similarity=0.217  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2em8_A           12 PYKCVECGKGYK--RRLDLDFHQR   33 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHHH
T ss_pred             CeECcccCchhC--CHHHHHHHHH
Confidence            588999999994  5666788864

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.50  E-value=0.35  Score=28.54  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2emh_A           12 PYICTVCGKAF--TDRSNLIKHQK   33 (46)
T ss_dssp             SEECTTTCCEE--SSHHHHHHHHH
T ss_pred             CcCCCCCCchh--CCHHHHHHHHH
Confidence            48899999999  45666787863

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=86.49  E-value=0.38  Score=28.39  Aligned_cols=22  Identities=23%  Similarity=0.545  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2em0_A           12 TWKCRECDMCFS--QASSLRLHQN   33 (46)
T ss_dssp             CCCCSSSCCCCS--SHHHHHHHGG
T ss_pred             CeECCCCCcccC--CHHHHHHHHH
Confidence            488999999994  5666788864

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.43  E-value=0.34  Score=28.51  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ytr_A           12 PYKCNECGKAF--SQTSKLARHQR   33 (46)
T ss_dssp             TTCCTTTCCCC--SSHHHHHHHHT
T ss_pred             CcCCCCCCCcc--CCHHHHHHHHH
Confidence            48899999999  45666788864

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.40  E-value=0.35  Score=28.78  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ytm_A           12 PYKCMECGKAFG--DNSSCTQHQR   33 (46)
T ss_dssp             SSSBTTTTBCCS--SHHHHHHHHH
T ss_pred             CcCCCCCCchhC--CHHHHHHHHH
Confidence            488999999994  5666788863

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.38  E-value=0.4  Score=28.30  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (46)
T 2ytn_A           12 PYKCNECGKVFT--QNSHLARHRG   33 (46)
T ss_dssp             SCBCTTTCCBCS--SHHHHHHHGG
T ss_pred             CeECCCCCCeeC--CHHHHHHHhh
Confidence            488999999994  5666788863

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.34  E-value=0.39  Score=28.44  Aligned_cols=22  Identities=27%  Similarity=0.378  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ytq_A           12 PYGCSECGKAFS--SKSYLIIHMR   33 (46)
T ss_dssp             SCBCSSSCCBCS--CHHHHHHHHT
T ss_pred             CcCCCccChhhC--ChHHHHHHHH
Confidence            488999999994  5666788864

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.29  E-value=0.35  Score=28.55  Aligned_cols=22  Identities=23%  Similarity=0.545  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2en6_A           12 PYGCNECGKTFS--QKSILSAHQR   33 (46)
T ss_dssp             CEEETTTTEEES--SHHHHHHHHH
T ss_pred             CeECCCCCcccC--chHHHHHHHH
Confidence            478999999994  5666777763

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.28  E-value=0.26  Score=28.86  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~~   33 (44)
T 2eox_A           12 SYNCNECGKAFT--RIFHLTRHQK   33 (44)
T ss_dssp             CEEETTTTEEES--SSHHHHTTHH
T ss_pred             CeECcccCcccC--CHHHHHHHHH
Confidence            478999999994  4555677863

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.28  E-value=0.38  Score=28.42  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2epz_A           12 PFDCIDCGKAFS--DHIGLNQHRR   33 (46)
T ss_dssp             SBCCTTTCCCBS--SHHHHHHHHT
T ss_pred             CeECCCCCceeC--CHHHHHHHHH
Confidence            588999999994  5666788864

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.28  E-value=0.33  Score=28.76  Aligned_cols=22  Identities=18%  Similarity=0.526  Sum_probs=16.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2eoy_A           12 CFKCNKCEKTFS--CSKYLTQHER   33 (46)
T ss_dssp             CEECSSSCCEES--SSHHHHHHHT
T ss_pred             CEECcCCCCcCC--CHHHHHHHHH
Confidence            478999999994  4455677763

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.23  E-value=0.35  Score=28.57  Aligned_cols=22  Identities=23%  Similarity=0.489  Sum_probs=16.9

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2eoq_A           12 PFKCDICGKSF--CGRSRLNRHSM   33 (46)
T ss_dssp             SCCCSSSCCCC--SSHHHHHHHHH
T ss_pred             CcCCCcCCchh--CCHHHHHHHHH
Confidence            48899999999  45666777753

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.22  E-value=0.32  Score=28.75  Aligned_cols=22  Identities=18%  Similarity=0.369  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ytg_A           12 PFKCGECGKSYN--QRVHLTQHQR   33 (46)
T ss_dssp             SEECTTTCCEES--SSHHHHTTGG
T ss_pred             CeECCCCCcccC--CHHHHHHHHH
Confidence            588999999994  4556788864

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.15  E-value=0.46  Score=28.01  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2em7_A           12 PYKCEECGKGF--ICRRDLYTHHM   33 (46)
T ss_dssp             SEECSSSCCEE--SCHHHHHHHGG
T ss_pred             CccCCCccchh--CCHHHHHHHHH
Confidence            47899999999  45666788864

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.05  E-value=0.4  Score=28.31  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ytk_A           12 PYKCNECGKVFT--QNSHLTNHWR   33 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHHH
T ss_pred             CEeCCcCCCccC--CHHHHHHHHH
Confidence            478999999994  5666777763

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.01  E-value=0.61  Score=32.44  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=19.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKA   32 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~   32 (197)
                      .|.|++|++.|. ++.+.++.|.  +.|..
T Consensus        24 ~~~C~~C~k~f~-~~~~~L~~H~--~~h~~   50 (98)
T 2gqj_A           24 EAVCPTCNVVTR-KTLVGLKKHM--EVCQK   50 (98)
T ss_dssp             CCCCTTTCCCCS-SCSHHHHHHH--HHHHH
T ss_pred             CcCCCCCCCChh-hhHHHHHHHH--HHHcC
Confidence            588999999993 1556678887  34553

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.00  E-value=0.38  Score=28.28  Aligned_cols=21  Identities=19%  Similarity=0.499  Sum_probs=16.5

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  +.+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (46)
T 2eq4_A           12 LYNCKECGKSFS--RAPCLLKHE   32 (46)
T ss_dssp             CCCBTTTTBCCS--CHHHHHHHH
T ss_pred             CeECCCCCCccC--chHHHHHHH
Confidence            488999999994  566677775

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=85.96  E-value=0.43  Score=27.11  Aligned_cols=22  Identities=18%  Similarity=0.359  Sum_probs=16.8

Q ss_pred             cccccC--CcceeccCCHHHHHHhhc
Q 029213            3 RYYCDY--CDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdY--Cd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++  |++.|  ...+.++.|..
T Consensus         8 ~~~C~~~~C~k~f--~~~~~L~~H~~   31 (37)
T 1va1_A            8 QHICHIQGCGKVY--GKTSHLRAHLR   31 (37)
T ss_dssp             CEECCSTTCCCEE--SCHHHHHHHHH
T ss_pred             CCCCCCCCCCCcc--CCHHHHHHHHH
Confidence            478996  99999  45666788863

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=85.87  E-value=0.43  Score=28.13  Aligned_cols=22  Identities=32%  Similarity=0.637  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ema_A           12 RYKCNECGKVFS--RNSQLSQHQK   33 (46)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHT
T ss_pred             CcCCCCCcchhC--CHHHHHHHHH
Confidence            488999999994  5566777764

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.85  E-value=0.41  Score=28.23  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2ytd_A           12 PYKCSECGKAF--HRHTHLNEHRR   33 (46)
T ss_dssp             SEECSSSCCEE--SSHHHHHHHHH
T ss_pred             CeECCCCCCee--CChHHHHHHHH
Confidence            48899999999  45666777753

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=85.74  E-value=0.34  Score=38.50  Aligned_cols=26  Identities=19%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             ccccCCcceeccCCHHHHHHhhcchHHHHHH
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNAGYKHKANV   34 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NV   34 (197)
                      -||+.|.+.|  ++   +++|+.+.+|++-+
T Consensus        88 GyCE~C~~~y--~~---l~~H~~s~~Hr~fa  113 (144)
T 4f9c_B           88 GYCECCLQKY--ED---LETHLLSEQHRNFA  113 (144)
T ss_dssp             CEETTTTEEC--SC---HHHHHHSHHHHHHH
T ss_pred             CCccchhhhh--hh---HHHHcCCHHHHHHH
Confidence            4999999999  33   47899999998544

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.69  E-value=0.44  Score=28.12  Aligned_cols=22  Identities=23%  Similarity=0.478  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2emp_A           12 PYMCNECGKAF--SVYSSLTTHQV   33 (46)
T ss_dssp             SEECSSSCCEE--SCHHHHHHHHH
T ss_pred             CeECCCCCchh--CCHHHHHHHHH
Confidence            48899999999  45666788863

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.57  E-value=0.44  Score=27.99  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2en8_A           12 SHTCDECGKNFC--YISALRIHQR   33 (46)
T ss_dssp             SEECTTTCCEES--SHHHHHHHHT
T ss_pred             CeECCCcCcccC--CHHHHHHHHH
Confidence            488999999994  5666777863

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.20  E-value=0.49  Score=27.88  Aligned_cols=22  Identities=18%  Similarity=0.458  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~f--~~~~~L~~H~~   33 (46)
T 2en1_A           12 PFKCEECGKRF--TQNSQLHSHQR   33 (46)
T ss_dssp             SEEETTTTEEE--SSHHHHHHHGG
T ss_pred             CeeCCCCCccc--CCHHHHHHHHH
Confidence            47899999999  45666788864

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.11  E-value=0.46  Score=28.04  Aligned_cols=21  Identities=14%  Similarity=0.227  Sum_probs=16.4

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  +.+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (46)
T 2yso_A           12 SHQCRECGEIFF--QYVSLIEHQ   32 (46)
T ss_dssp             CEECTTTCCEES--SHHHHHHHH
T ss_pred             CEEccccChhhC--CHHHHHHHH
Confidence            488999999994  556667775

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.91  E-value=0.47  Score=27.90  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=17.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        12 ~~~C~~C~k~F--~~~~~L~~H~~   33 (46)
T 2eoe_A           12 PYKCNECGKVF--TQNSHLANHQR   33 (46)
T ss_dssp             SSEETTTTEEC--SSHHHHHHHHG
T ss_pred             CeECCCcChhh--CCHHHHHHHHH
Confidence            48899999999  45666788863

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.85  E-value=0.49  Score=27.88  Aligned_cols=21  Identities=19%  Similarity=0.403  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  +.+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (46)
T 2enc_A           12 PFKCEECGKGFY--TNSQCYSHQ   32 (46)
T ss_dssp             SEECSSSCCEES--SHHHHHHHH
T ss_pred             CcCCCCCCCcCC--ChHHHHHHH
Confidence            488999999994  566677775

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=84.81  E-value=0.39  Score=28.47  Aligned_cols=22  Identities=18%  Similarity=0.369  Sum_probs=16.5

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  +.+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2ely_A           12 PFKCVECGKGFS--RRSALNVHHK   33 (46)
T ss_dssp             SBCCSSSCCCBS--STTHHHHHHH
T ss_pred             CcccCccCcccC--CHHHHHHHHH
Confidence            488999999995  4455677763

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=84.69  E-value=0.49  Score=28.89  Aligned_cols=22  Identities=23%  Similarity=0.576  Sum_probs=14.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        29 ~~~C~~C~~~f--~~~~~l~~H~~   50 (57)
T 1bbo_A           29 PYHCTYCNFSF--KTKGNLTKHMK   50 (57)
T ss_dssp             CEECSSSSCEE--SSHHHHHHHHH
T ss_pred             CccCCCCCchh--cCHHHHHHHHH
Confidence            36788888887  34555566653

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=84.64  E-value=0.91  Score=31.43  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=12.6

Q ss_pred             ccccCCcceeccCCHHHHHHhhc
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      |.|++|++.|.  +...++.|..
T Consensus        38 ~~C~~C~~~f~--~~~~l~~H~~   58 (110)
T 2csh_A           38 YGCGVCGKKFK--MKHHLVGHMK   58 (110)
T ss_dssp             EECTTTSCEES--SSHHHHHHHT
T ss_pred             ccCCCCCcccC--CHHHHHHHHH
Confidence            66777777773  3444566653

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=84.52  E-value=0.48  Score=30.74  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=17.1

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        14 ~~~C~~C~k~f--~~~~~L~~H~~   35 (72)
T 1x6e_A           14 PYGCVECGKAF--SRSSILVQHQR   35 (72)
T ss_dssp             CEECSSSCCEE--SSHHHHHHHHH
T ss_pred             CccCCCCCCcc--CCHHHHHHHHH
Confidence            58899999999  45666777864

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=84.47  E-value=0.47  Score=27.95  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=16.8

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus        10 ~~~C~~C~k~f~--~~~~l~~H~~   31 (45)
T 2epq_A           10 PYSCPVCGLRFK--RKDRMSYHVR   31 (45)
T ss_dssp             SSEETTTTEECS--CHHHHHHHHH
T ss_pred             CCcCCCCCcccC--CHHHHHHHHH
Confidence            588999999994  5566677753

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=84.43  E-value=0.49  Score=29.86  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=11.9

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|.|++|++.|  .+.+.++.|.
T Consensus        40 ~~~C~~C~k~f--~~~~~L~~H~   60 (66)
T 2drp_A           40 VYPCPFCFKEF--TRKDNMTAHV   60 (66)
T ss_dssp             CEECTTTCCEE--SCHHHHHHHH
T ss_pred             CeECCCCCCcc--CCHHHHHHHH
Confidence            35666776666  3444455554

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=84.33  E-value=0.5  Score=30.38  Aligned_cols=20  Identities=30%  Similarity=0.695  Sum_probs=10.6

Q ss_pred             ccccCCcceeccCCHHHHHHhh
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      |.|++|++.|  .+.+.++.|.
T Consensus        38 ~~C~~C~~~f--~~~~~L~~H~   57 (70)
T 1x5w_A           38 FKCNYCSFDT--KQPSNLSKHM   57 (70)
T ss_dssp             EECSSSSCEE--SSHHHHHHHH
T ss_pred             EeCCCCCCcc--CCHHHHHHHH
Confidence            5566666666  2344445554

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.86  E-value=0.53  Score=30.81  Aligned_cols=21  Identities=14%  Similarity=0.300  Sum_probs=17.0

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|  .+.+.++.|.
T Consensus         7 ~~~C~~C~k~f--~~~~~L~~H~   27 (78)
T 2d9h_A            7 GLQCEICGFTC--RQKASLNWHQ   27 (78)
T ss_dssp             CEECSSSCCEE--SSHHHHHHHH
T ss_pred             CeECCCCCCee--CCHHHHHHHH
Confidence            58899999999  4566678886

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.78  E-value=0.48  Score=27.92  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~~   33 (46)
T 2yu8_A           12 PYKCNECGKVFT--QNSHLARHRR   33 (46)
T ss_dssp             SEECSSSCCEES--SSHHHHHHTH
T ss_pred             CeECCcCCchhC--CHHHHHHHHH
Confidence            488999999994  4455677863

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.57  E-value=0.5  Score=27.76  Aligned_cols=21  Identities=19%  Similarity=0.232  Sum_probs=16.0

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  ..+.++.|.
T Consensus        12 ~~~C~~C~k~F~--~~~~L~~H~   32 (46)
T 2epw_A           12 PCKCTECGKAFC--WKSQLIMHQ   32 (46)
T ss_dssp             SEECSSSCCEES--SSHHHHHHH
T ss_pred             CeeCCCCCCccC--CHHHHHHHH
Confidence            488999999994  445567775

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=83.51  E-value=0.5  Score=32.37  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=15.8

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  ..+.++.|.
T Consensus        13 py~C~~CgK~F~--~~s~L~~H~   33 (66)
T 2epp_A           13 ILPCGLCGKVFT--DANRLRQHE   33 (66)
T ss_dssp             CCCCTTTCCCCS--CHHHHHHHH
T ss_pred             CcCCCCCCCccC--CHHHHHhhh
Confidence            488999999994  455566665

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=83.49  E-value=0.65  Score=24.89  Aligned_cols=22  Identities=23%  Similarity=0.659  Sum_probs=16.4

Q ss_pred             ccccc--CCcceeccCCHHHHHHhhc
Q 029213            3 RYYCD--YCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCd--YCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|+  +|++.|.  ..+.++.|..
T Consensus         2 p~~C~~~~C~k~f~--~~~~L~~H~~   25 (31)
T 1sp2_A            2 PFMCTWSYCGKRFT--RSDELQRHKR   25 (31)
T ss_dssp             CCBCCSTTCCCBCS--SHHHHHHHHT
T ss_pred             CcCCcCCCCCcccC--CHhHHHHHHH
Confidence            37898  9999994  5666777763

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.45  E-value=0.6  Score=30.58  Aligned_cols=20  Identities=30%  Similarity=0.472  Sum_probs=10.7

Q ss_pred             ccccCCcceeccCCHHHHHHhh
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      |.|++|++.|  .+.+.++.|.
T Consensus        46 ~~C~~C~~~f--~~~~~L~~H~   65 (77)
T 2ct1_A           46 FHCPHCDTVI--ARKSDLGVHL   65 (77)
T ss_dssp             EECSSSSCEE--SSHHHHHHHH
T ss_pred             cCCCCCCCcc--CCHHHHHHHH
Confidence            5566666666  2344445554

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=83.29  E-value=0.58  Score=28.95  Aligned_cols=22  Identities=18%  Similarity=0.486  Sum_probs=16.6

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  .+.+.++.|..
T Consensus         2 ~~~C~~C~~~f--~~~~~l~~H~~   23 (60)
T 2adr_A            2 SFVCEVCTRAF--ARQEHLKRHYR   23 (60)
T ss_dssp             CBCCTTTCCCB--SCHHHHHHHHH
T ss_pred             cCcCCCCcccc--CCHHHHHHHHH
Confidence            37899999999  45666777764

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=83.25  E-value=0.58  Score=29.53  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=16.8

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        10 ~~~C~~C~k~f--~~~~~l~~H~~   31 (66)
T 2drp_A           10 TYRCKVCSRVY--THISNFCRHYV   31 (66)
T ss_dssp             EEECTTTCCEE--SSHHHHHHHHH
T ss_pred             ceECCCCcchh--CCHHHHHHHHH
Confidence            47899999999  45666677753

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=83.24  E-value=0.59  Score=28.54  Aligned_cols=22  Identities=23%  Similarity=0.470  Sum_probs=16.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  .+.+.++.|..
T Consensus         4 ~~~C~~C~~~f--~~~~~l~~H~~   25 (57)
T 3uk3_C            4 SRECSYCGKFF--RSNYYLNIHLR   25 (57)
T ss_dssp             -CBCTTTCCBC--SCHHHHHHHHH
T ss_pred             CccCCCCcchh--CChHHHHHHHH
Confidence            58899999999  45666677764

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.22  E-value=0.59  Score=30.30  Aligned_cols=22  Identities=23%  Similarity=0.339  Sum_probs=17.5

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        42 ~~~C~~C~~~f--~~~~~L~~H~~   63 (72)
T 1x6e_A           42 PYKCLECGKAF--SQNSGLINHQR   63 (72)
T ss_dssp             CEECSSSCCEE--SSHHHHHHHHH
T ss_pred             CeECCCCCccc--CCHHHHHHHHH
Confidence            48899999999  45677788863

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=83.22  E-value=0.57  Score=28.58  Aligned_cols=21  Identities=33%  Similarity=0.706  Sum_probs=16.6

Q ss_pred             ccccCCcceeccCCHHHHHHhhc
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      |.|++|++.|  .+.+.++.|..
T Consensus         2 ~~C~~C~~~f--~~~~~l~~H~~   22 (57)
T 1bbo_A            2 YICEECGIRX--KKPSMLKKHIR   22 (57)
T ss_dssp             CBCTTTCCBC--SSHHHHHHHHH
T ss_pred             CcCCCCcCcC--CCHHHHHHHHH
Confidence            7899999999  45666777763

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=83.20  E-value=0.65  Score=29.82  Aligned_cols=22  Identities=18%  Similarity=0.282  Sum_probs=17.7

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus         9 ~~~C~~C~k~f--~~~~~L~~H~~   30 (70)
T 1x5w_A            9 PEKCSECSYSC--SSKAALRIHER   30 (70)
T ss_dssp             SEECSSSSCEE--SSHHHHHHHHG
T ss_pred             CeECCCCCccc--CCHHHHHHHHH
Confidence            58899999999  45666788874

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=82.91  E-value=0.65  Score=28.33  Aligned_cols=22  Identities=18%  Similarity=0.525  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|++|++.|  .+.+.++.|..
T Consensus        32 ~~~C~~C~~~f--~~~~~l~~H~~   53 (57)
T 3uk3_C           32 PYKCEFCEYAA--AQKTSLRYHLE   53 (57)
T ss_dssp             CEECSSSSCEE--SSHHHHHHHHH
T ss_pred             CcCCCCCcchh--CCHHHHHHHHH
Confidence            47899999999  45666777764

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=82.63  E-value=0.67  Score=28.69  Aligned_cols=21  Identities=24%  Similarity=0.550  Sum_probs=16.2

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|.|++|++.|.  ..+.++.|.
T Consensus        12 ~~~C~~C~k~f~--~~~~L~~H~   32 (54)
T 2eps_A           12 PYICQSCGKGFS--RPDHLNGHI   32 (54)
T ss_dssp             CEECSSSCCEES--SHHHHHHHH
T ss_pred             CeECCCCCcccC--CHHHHHHHH
Confidence            488999999994  456667775

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=82.34  E-value=0.64  Score=30.84  Aligned_cols=22  Identities=18%  Similarity=0.643  Sum_probs=16.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  ...+.++.|..
T Consensus         4 py~C~~C~k~F--~~~~~L~~H~~   25 (60)
T 4gzn_C            4 PFFCNFCGKTY--RDASGLSRHRR   25 (60)
T ss_dssp             CEECTTTCCEE--SSHHHHHHHHH
T ss_pred             CccCCCCCCEe--CCHHHHHHHHH
Confidence            37899999999  35566677763

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=82.23  E-value=0.71  Score=29.70  Aligned_cols=20  Identities=15%  Similarity=0.386  Sum_probs=11.9

Q ss_pred             ccccCCcceeccCCHHHHHHhh
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      |.|++|++.|  .+.+.++.|.
T Consensus        50 ~~C~~C~~~f--~~~~~l~~H~   69 (73)
T 1f2i_G           50 FQCRICMRNF--SRSDHLTTHI   69 (73)
T ss_dssp             EECTTTCCEE--SCHHHHHHHH
T ss_pred             eECCCCCchh--CCHHHHHHHH
Confidence            5677777776  3445555554

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=82.19  E-value=0.67  Score=30.32  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|  .+.+.++.|..
T Consensus        15 ~~~C~~C~k~f--~~~~~L~~H~~   36 (77)
T 2ct1_A           15 PYECYICHARF--TQSGTMKMHIL   36 (77)
T ss_dssp             SEECTTTCCEE--SCHHHHHHHHH
T ss_pred             CeECCCcCchh--CCHHHHHHHHH
Confidence            48899999999  45666777763

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=81.73  E-value=0.67  Score=32.81  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=12.4

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|.|++|++.|.  ..+.++.|+
T Consensus        56 ~~~C~~C~k~F~--~~~~L~~H~   76 (85)
T 2lv2_A           56 VFPCKYCPATFY--SSPGLTRHI   76 (85)
T ss_dssp             SEECTTSSCEES--SHHHHHHHH
T ss_pred             ccCCCCCCCEeC--CHHHHHHhC
Confidence            366777777773  344455554

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=81.52  E-value=0.74  Score=24.74  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=16.2

Q ss_pred             ccccc--CCcceeccCCHHHHHHhhc
Q 029213            3 RYYCD--YCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCd--YCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|+  .|++.|.  ..+.++.|..
T Consensus         3 ~~~C~~~~C~k~f~--~~~~L~~H~~   26 (32)
T 1zfd_A            3 PYSCDHPGCDKAFV--RNHDLIRHKK   26 (32)
T ss_dssp             SBCCCCTTCCCCBS--SSHHHHHHHG
T ss_pred             CCcCcCCCCCCccC--CHHHHHHHHH
Confidence            47899  8999994  4455677764

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=81.51  E-value=0.11  Score=28.82  Aligned_cols=21  Identities=14%  Similarity=0.395  Sum_probs=15.0

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  ..+.++.|.
T Consensus         2 p~~C~~C~k~f~--~~~~L~~H~   22 (32)
T 2kfq_A            2 AFACPACPKRFM--RSDALSKHI   22 (32)
T ss_dssp             CSSSSSSCTTHH--HHHTTSSST
T ss_pred             CCCCCCCCcccC--CHHHHHHHH
Confidence            378999999994  344456665

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.40  E-value=0.79  Score=29.95  Aligned_cols=21  Identities=24%  Similarity=0.817  Sum_probs=16.4

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|.|++|++.|  .+.+.++.|.
T Consensus        38 ~~~C~~C~k~f--~~~~~L~~H~   58 (78)
T 2d9h_A           38 RFPCEFCGKRF--EKPDSVAAHR   58 (78)
T ss_dssp             CEECTTTCCEE--SSHHHHHHHH
T ss_pred             ccCCCCCCchh--CCHHHHHHHH
Confidence            58899999999  4556667775

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=80.59  E-value=0.92  Score=25.44  Aligned_cols=21  Identities=19%  Similarity=0.468  Sum_probs=16.1

Q ss_pred             cccccC--CcceeccCCHHHHHHhh
Q 029213            3 RYYCDY--CDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdY--Cd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++  |++.|.  ..+.++.|.
T Consensus         6 ~~~C~~~~C~k~f~--~~~~L~~H~   28 (38)
T 1bhi_A            6 PFLCTAPGCGQRFT--NEDHLAVHK   28 (38)
T ss_dssp             CEECCCTTTCCEES--SHHHHHHHH
T ss_pred             ceECCCCCCCcccC--CHHHHHHHH
Confidence            478995  999994  566677786

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.25  E-value=0.71  Score=32.07  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=16.7

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|.|++|++.|  .+.+.++.|.
T Consensus        54 ~~~C~~C~k~F--~~~~~L~~H~   74 (98)
T 2gqj_A           54 ALKCQHCRKQF--KSKAGLNYHT   74 (98)
T ss_dssp             HHSCSSSCCCC--SCHHHHHHHH
T ss_pred             CEECCCCCCcc--CCHHHHHHHH
Confidence            47899999999  4566677775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	197
d2vrda1	61	g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human	2e-33
d1zu1a1	72	g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF34	0.004

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 2e-33
 Identities = 43/66 (65%), Positives = 51/66 (77%), Gaps = 7/66 (10%)

Query: 1  MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
          MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct: 1  MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 53

Query: 61 TAAFQQ 66
          TAAFQQ
Sbjct: 54 TAAFQQ 59

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 72

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 32.7 bits (74), Expect = 0.004
 Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 2/41 (4%)

Query: 5  YCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQ 45
           C  C   L  +S   +  H    KH   VR Y    + + 
Sbjct: 34 QCKVCSAVLISESQ--KLAHYQSRKHANKVRRYMAINQGED 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	197
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	99.88
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	98.63
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.04
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.66
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	96.01
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	94.65
d1fu9a_	36	U-shaped transcription factor, different fingers {	92.66
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	92.42
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	91.74
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	89.76
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	88.76
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	88.62
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	88.45
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	88.09
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	87.93
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	87.81
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	87.77
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	87.7
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	87.66
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	87.47
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	86.88
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	86.39
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	86.05
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	85.14
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	85.14
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	83.97
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	81.08
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	80.89
d1pg5b2	56	Aspartate carbamoyltransferase, Regulatory-chain,	80.82
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	80.8

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1e-24  Score=152.79  Aligned_cols=55  Identities=67%  Similarity=1.206  Sum_probs=51.4

Q ss_pred             CCcccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 029213            1 MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIK   55 (197)
Q Consensus         1 MPryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~~~~ek~Q~l~dk~lk   55 (197)
                      ||||||||||+||+||+.++|+.|++|++|++||++||+.|.++++++++|+.++
T Consensus         1 MpryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy~~~~~~~aq~l~d~~~~   55 (61)
T d2vrda1           1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTA   55 (61)
T ss_dssp             CCSCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHTSSSSSSCCCSHHHHHHH
T ss_pred             CCchhhhhhcchhccCChhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888888887543

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=6.4e-09  Score=72.86  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             CcccccCCcceeccCCHHHHHHhhcchHHHHHHHHH
Q 029213            2 PRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSY   37 (197)
Q Consensus         2 PryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~y   37 (197)
                      +.|||..|++||  .|..++++|+.+|+||++|++.
T Consensus        14 gqfYCv~C~K~F--~se~~l~~H~ksKkHKrrvk~L   47 (67)
T d1zr9a1          14 GLHRCLACARYF--IDSTNLKTHFRSKDHKKRLKQL   47 (67)
T ss_dssp             GCSEETTTTEEC--SSHHHHHHHTTCHHHHHHHHHH
T ss_pred             CEEecccccCcc--CCHHHHHHHHcccHHHHHHHHh
Confidence            479999999999  5788899999999999988864

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.04  E-value=1.4e-06  Score=58.81  Aligned_cols=33  Identities=30%  Similarity=0.525  Sum_probs=29.8

Q ss_pred             cccccCCcceeccCCHHHHHHhhcchHHHHHHHHH
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSY   37 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~y   37 (197)
                      ..||+.|+.||  +|..+..+|-.||+|.+|+++.
T Consensus        21 nk~C~lCn~~F--ns~~~AqsHY~GK~H~K~lk~~   53 (55)
T d1zu1a2          21 SKCCPVCNMTF--SSPVVAESHYIGKTHIKNLRLR   53 (55)
T ss_dssp             TTEETTTTEEC--SSHHHHHHHHTSHHHHHHHHHH
T ss_pred             hhhhhhhhccc--CCHHHHHHHhhhhHHHHHHHHh
Confidence            46999999999  7888889999999999999864

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.66  E-value=1.5e-05  Score=55.95  Aligned_cols=35  Identities=31%  Similarity=0.453  Sum_probs=31.4

Q ss_pred             ccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHH
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQ   40 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~   40 (197)
                      -||+.|+..|  -+.|-|..|-.|+||.+||++||.-
T Consensus        33 ~~CkvC~a~L--~seSQriaHYeskkHa~kvr~yf~~   67 (72)
T d1zu1a1          33 TQCKVCSAVL--ISESQKLAHYQSRKHANKVRRYMAI   67 (72)
T ss_dssp             SEETTTTEEC--CSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hhHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999  4677789999999999999999964

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0013  Score=42.72  Aligned_cols=37  Identities=19%  Similarity=0.331  Sum_probs=31.2

Q ss_pred             CcccccCCcceeccCCHHHHHHhhcchHHHHHHHHHHHH
Q 029213            2 PRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQ   40 (197)
Q Consensus         2 PryYCdYCd~~ft~Ds~SvRk~H~~GkrHk~NVk~yy~~   40 (197)
                      ++--|.||++-++ ...|+ ++|+-.++|+.+|+.++..
T Consensus         5 p~~eC~lC~vKYs-~~~Sv-rdHiFskqHI~~Vk~~v~~   41 (48)
T d2yrka1           5 TKPECTLCGVKYS-ARLSI-RDHIFSKQHISKVRETVGS   41 (48)
T ss_dssp             CCSCCTTTTCCCC-SSSCH-HHHHTSHHHHHHHHHTTCS
T ss_pred             CcccCcccceeee-eecch-HhhhhhHHHHHHHHHHHHh
Confidence            3567999999995 66777 8999999999999988654

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0073  Score=35.04  Aligned_cols=22  Identities=32%  Similarity=0.703  Sum_probs=19.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      ||.|+||++.-  ...|+++.|.+
T Consensus         1 kYvC~~Cg~~C--~KPSvL~KHIR   22 (28)
T d1bboa1           1 KYICEECGIRA--KKPSMLKKHIR   22 (28)
T ss_dssp             CCBCTTTCCBC--SSHHHHHHHHH
T ss_pred             CccccccCccc--CCHHHHHHHHH
Confidence            79999999997  67999998875

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.66  E-value=0.023  Score=34.63  Aligned_cols=21  Identities=24%  Similarity=0.564  Sum_probs=17.6

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      ..||+-||+.|  ++.+.++.|-
T Consensus         8 ~rYC~~CDI~F--n~~~T~~aHK   28 (36)
T d1fu9a_           8 KKYCSTCDISF--NYVKTYLAHK   28 (36)
T ss_dssp             CSEETTTTEEC--SSHHHHHHHH
T ss_pred             hhHHhhCCcee--hhHHHHHHHH
Confidence            46999999999  6788888873

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.42  E-value=0.033  Score=33.28  Aligned_cols=22  Identities=18%  Similarity=0.398  Sum_probs=17.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      -|.|++|++.|+  ..+.++.|..
T Consensus         7 Py~C~~C~k~F~--~~~~L~~H~r   28 (35)
T d1srka_           7 PFVCRICLSAFT--TKANCARHLK   28 (35)
T ss_dssp             CEECSSSCCEES--SHHHHHHHHG
T ss_pred             cccCCCCCCccc--ChHHHHHHcc
Confidence            488999999994  4566788863

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.74  E-value=0.04  Score=32.87  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=16.9

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      -|-|++|++.|+  ..+.++.|..
T Consensus         8 P~~C~~C~k~F~--~~~~L~~H~~   29 (36)
T d2ct1a2           8 PYECYICHARFT--QSGTMKMHIL   29 (36)
T ss_dssp             SEECTTTCCEES--CHHHHHHHHH
T ss_pred             CEeCCCCccccc--chHHHHHHcc
Confidence            488999999994  4555677864

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=89.76  E-value=0.079  Score=30.22  Aligned_cols=20  Identities=20%  Similarity=0.562  Sum_probs=15.6

Q ss_pred             ccccCCcceeccCCHHHHHHhh
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      |-|++|++.|+  ..+.++.|.
T Consensus         3 ~~C~~C~k~F~--~~~~L~~H~   22 (29)
T d2adra1           3 FVCEVCTRAFA--RQEHLKRHY   22 (29)
T ss_dssp             BCCTTTCCCBS--CHHHHHHHH
T ss_pred             CCCCCCCCCCC--CchHccccc
Confidence            78999999994  455567776

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.76  E-value=0.11  Score=30.60  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=16.3

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|++|++.|.  ..+.++.|.
T Consensus         7 py~C~~Cgk~F~--~~~~L~~H~   27 (33)
T d1x6ea1           7 PYGCVECGKAFS--RSSILVQHQ   27 (33)
T ss_dssp             CEECSSSCCEES--SHHHHHHHH
T ss_pred             CeeCCCCCCEeC--chHHhHhhc
Confidence            588999999994  456667775

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.62  E-value=0.11  Score=29.51  Aligned_cols=21  Identities=14%  Similarity=0.369  Sum_probs=15.3

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      -|-|++|++.|+  ..+.++.|.
T Consensus         3 Py~C~~C~k~F~--~~~~L~~H~   23 (28)
T d1a1ia2           3 PFQCRICMRNFS--RSDHLTTHI   23 (28)
T ss_dssp             CEECTTTCCEES--CHHHHHHHH
T ss_pred             CccCCCCcCEec--ccccccccC
Confidence            488999999994  344456665

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.45  E-value=0.13  Score=29.64  Aligned_cols=20  Identities=30%  Similarity=0.750  Sum_probs=15.4

Q ss_pred             ccccCCcceeccCCHHHHHHhh
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      |-||.|++.|.  ....|+.|.
T Consensus         4 f~C~~CgrkFA--rsderkRH~   23 (28)
T d1a1ia3           4 FACDICGRKFA--RSDERKRHT   23 (28)
T ss_dssp             EECTTTCCEES--SHHHHHHHH
T ss_pred             cccchhhhhhh--cchhhhhhh
Confidence            78999999994  445577775

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.09  E-value=0.13  Score=30.65  Aligned_cols=22  Identities=32%  Similarity=0.831  Sum_probs=18.3

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      -|.|+||=+|+  +|..+++.|..
T Consensus         7 LyiCEfCLKYm--ks~~~l~RH~~   28 (33)
T d1m36a_           7 LYLCEFCLKYM--KSRTILQQHMK   28 (33)
T ss_dssp             CEECSSSCCEE--SCHHHHHHHHH
T ss_pred             eeeehhhhhhh--CCHHHHHHHHH
Confidence            48899999999  78888887753

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.93  E-value=0.12  Score=31.29  Aligned_cols=21  Identities=24%  Similarity=0.550  Sum_probs=15.9

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      -|-|++|++.|.  ..+.++.|.
T Consensus         5 py~C~~Cgk~F~--~~~~L~~H~   25 (39)
T d2epsa1           5 PYICQSCGKGFS--RPDHLNGHI   25 (39)
T ss_dssp             CEECSSSCCEES--SHHHHHHHH
T ss_pred             CccCCCCCCCcC--ChHHhhccC
Confidence            488999999994  455567674

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.81  E-value=0.13  Score=29.42  Aligned_cols=22  Identities=23%  Similarity=0.493  Sum_probs=16.9

Q ss_pred             cccccC--CcceeccCCHHHHHHhhc
Q 029213            3 RYYCDY--CDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdY--Cd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|+|  |++.|+  ..+.++.|..
T Consensus         2 p~~C~~~gC~k~F~--~~~~L~~H~r   25 (29)
T d1a1ia1           2 PYACPVESCDRRFS--RSADLTRHIR   25 (29)
T ss_dssp             CEECCSTTCCCEES--SHHHHHHHTH
T ss_pred             CeECCCCCCCcEEC--chhHhhhhcC
Confidence            488999  999994  5566788863

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.77  E-value=0.11  Score=29.76  Aligned_cols=22  Identities=14%  Similarity=0.381  Sum_probs=16.4

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|+  ..+.++.|..
T Consensus         2 py~C~~C~k~F~--~~s~L~~H~r   23 (29)
T d1sp1a_           2 KFACPECPKRFM--RSDHLSKHIK   23 (29)
T ss_dssp             CSCCTTTTCCCS--CSHHHHHHHH
T ss_pred             CEECCcCCCeec--chHHhhhhcC
Confidence            588999999995  3455677764

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.70  E-value=0.14  Score=29.43  Aligned_cols=22  Identities=14%  Similarity=0.431  Sum_probs=17.1

Q ss_pred             cccccC--CcceeccCCHHHHHHhhc
Q 029213            3 RYYCDY--CDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdY--Cd~~ft~Ds~SvRk~H~~   26 (197)
                      -|.|+|  |++.|+  ..+.++.|.+
T Consensus         2 p~~C~~~gCgk~F~--~~~~L~~H~r   25 (30)
T d1ubdc3           2 PFQCTFEGCGKRFS--LDFNLRTHVR   25 (30)
T ss_dssp             CEECCSTTCCCEES--CHHHHHHHHH
T ss_pred             CccCCCCCCCceEC--cHHHcCcccc
Confidence            388999  999994  5666788863

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.66  E-value=0.14  Score=30.53  Aligned_cols=22  Identities=32%  Similarity=0.634  Sum_probs=16.9

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      .|-|++|++.|.  ..+.++.|..
T Consensus        12 py~C~~CgK~F~--~~s~L~~H~r   33 (38)
T d2cota2          12 RYKCDECGKSFS--HSSDLSKHRR   33 (38)
T ss_dssp             SSBCSSSCCBCS--CHHHHHHHHT
T ss_pred             CEecCCCCceee--CHHHHHHhCc
Confidence            588999999994  5566677753

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.47  E-value=0.14  Score=30.33  Aligned_cols=22  Identities=18%  Similarity=0.433  Sum_probs=17.2

Q ss_pred             cccccCCcceeccCCHHHHHHhhc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~   26 (197)
                      -|-|++|++.|+  ..+.++.|..
T Consensus        11 Py~C~~C~k~F~--~~~~L~~H~r   32 (37)
T d1p7aa_          11 PFQCPDCDRSFS--RSDHLALHRK   32 (37)
T ss_dssp             SBCCTTTCCCBS--SHHHHHHHHG
T ss_pred             CeEeCCCCCEec--CHHHHHHHHh
Confidence            489999999994  5566788863

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.88  E-value=0.099  Score=30.20  Aligned_cols=26  Identities=23%  Similarity=0.551  Sum_probs=21.7

Q ss_pred             ccccCCcceeccCCHHHHHHhhcchHHH
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNAGYKHK   31 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~GkrHk   31 (197)
                      |-|.+|+-.|  .+.-.+..|..++.|.
T Consensus         2 y~C~~CnF~F--KTKGNLTKHmkSKaH~   27 (29)
T d1bboa2           2 YHCTYCNFSF--KTKGNLTKHMKSKAHS   27 (29)
T ss_dssp             EECSSSSCEE--SSHHHHHHHHHSSSSC
T ss_pred             cccceeeeeE--eeccchhHhhhhhhhc
Confidence            7899999999  6777778898888774

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.39  E-value=0.19  Score=28.31  Aligned_cols=20  Identities=25%  Similarity=0.414  Sum_probs=14.8

Q ss_pred             ccccCCcceeccCCHHHHHHhh
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      |-|+.|++.|.  ..+.+..|.
T Consensus         3 y~C~eCgK~F~--~~s~L~~Hq   22 (26)
T d1x6ea2           3 YKCLECGKAFS--QNSGLINHQ   22 (26)
T ss_dssp             EECSSSCCEES--SHHHHHHHH
T ss_pred             ccCCCCcCeec--cCcccccCc
Confidence            78999999994  345556664

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.05  E-value=0.19  Score=29.68  Aligned_cols=21  Identities=24%  Similarity=0.516  Sum_probs=16.2

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      -|-|++|++.|+  ..+.++.|.
T Consensus         8 Py~C~~C~k~F~--~~~~L~~H~   28 (36)
T d1x6ha2           8 PYACSHCDKTFR--QKQLLDMHF   28 (36)
T ss_dssp             CEECSSSSCEES--SHHHHHHHH
T ss_pred             CEECCCCCCCcC--CHhHHHHhC
Confidence            478999999994  455567776

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.14  E-value=0.2  Score=28.79  Aligned_cols=21  Identities=19%  Similarity=0.347  Sum_probs=16.0

Q ss_pred             cccccC--CcceeccCCHHHHHHhh
Q 029213            3 RYYCDY--CDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdY--Cd~~ft~Ds~SvRk~H~   25 (197)
                      .|-|+|  |++.|+  ..+.++.|.
T Consensus         2 p~~C~~~gCgk~F~--~~~~L~~H~   24 (30)
T d2glia3           2 PHKCTFEGCRKSYS--RLENLKTHL   24 (30)
T ss_dssp             CCCCCSTTCCCCCS--SHHHHHHHH
T ss_pred             CeeCCCCCCCceEC--ChhHhhhhc
Confidence            378999  999994  455567775

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.14  E-value=0.19  Score=29.28  Aligned_cols=22  Identities=27%  Similarity=0.523  Sum_probs=16.4

Q ss_pred             cccccC--CcceeccCCHHHHHHhhc
Q 029213            3 RYYCDY--CDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdY--Cd~~ft~Ds~SvRk~H~~   26 (197)
                      -|-|+|  |++.|+  ..+.++.|..
T Consensus         3 P~~C~~pgC~k~F~--r~~~L~~H~r   26 (32)
T d1zfda_           3 PYSCDHPGCDKAFV--RNHDLIRHKK   26 (32)
T ss_dssp             SBCCCCTTCCCCBS--SSHHHHHHHG
T ss_pred             CeECcCCCCCCeeC--CHHHHHHHhh
Confidence            488999  999995  3455677754

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.97  E-value=0.22  Score=28.84  Aligned_cols=23  Identities=35%  Similarity=0.635  Sum_probs=17.4

Q ss_pred             ccccCCcceeccCCHHHHHHhhcch
Q 029213            4 YYCDYCDTYLTHDSPSVRKQHNAGY   28 (197)
Q Consensus         4 yYCdYCd~~ft~Ds~SvRk~H~~Gk   28 (197)
                      |-|.||+-... |+.. +|.|...+
T Consensus         3 y~cqyc~yrsa-dssn-lkthiktk   25 (30)
T d1klra_           3 YQCQYCEFRSA-DSSN-LKTHIKTK   25 (30)
T ss_dssp             CCCSSSSCCCS-CSHH-HHHHHHHH
T ss_pred             ccccccccccc-cchh-hhhhhhcc
Confidence            78999998873 6554 69998654

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.08  E-value=0.41  Score=27.49  Aligned_cols=22  Identities=18%  Similarity=0.603  Sum_probs=16.3

Q ss_pred             cccccC--CcceeccCCHHHHHHhhc
Q 029213            3 RYYCDY--CDTYLTHDSPSVRKQHNA   26 (197)
Q Consensus         3 ryYCdY--Cd~~ft~Ds~SvRk~H~~   26 (197)
                      .|.|+|  |++.|+  ..+.++.|..
T Consensus         2 pf~C~~~~C~k~F~--~~~~L~~H~r   25 (31)
T d1sp2a_           2 PFMCTWSYCGKRFT--RSDELQRHKR   25 (31)
T ss_dssp             CCBCCSTTCCCBCS--SHHHHHHHHT
T ss_pred             cCCCcCCCCCcCcC--ChhHhhhhcC
Confidence            478976  999995  4566677764

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.89  E-value=0.18  Score=28.76  Aligned_cols=21  Identities=24%  Similarity=0.656  Sum_probs=14.9

Q ss_pred             cccccC--CcceeccCCHHHHHHhh
Q 029213            3 RYYCDY--CDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdY--Cd~~ft~Ds~SvRk~H~   25 (197)
                      -|.|+|  |++.|++  .+.++.|.
T Consensus         2 Pf~C~~~gC~K~F~~--~~~L~~H~   24 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQ--STNLKSHI   24 (28)
T ss_dssp             CCCCCSTTCCCCCSS--TTTTHHHH
T ss_pred             CcCCCCCCcCCcCCC--HHHHHHHH
Confidence            378999  9999963  33356665

>d1pg5b2 g.41.7.1 (B:105-160) Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
family: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
domain: Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=80.82  E-value=0.27  Score=32.00  Aligned_cols=22  Identities=23%  Similarity=0.623  Sum_probs=15.5

Q ss_pred             cccccCCcceeccCCHHHHHHhhcc
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHNAG   27 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~~G   27 (197)
                      +|-|.||++.++.   ....+|+.|
T Consensus        35 ~lrC~YCe~~~~~---~~I~~~ll~   56 (56)
T d1pg5b2          35 KMRCEYCETIIDE---NEIMSQILG   56 (56)
T ss_dssp             EEEETTTCCEEEH---HHHHHHHTC
T ss_pred             EEEeeCCCCEecH---HHHHHHhcC
Confidence            6789999999953   333566654

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.80  E-value=0.42  Score=29.00  Aligned_cols=21  Identities=24%  Similarity=0.570  Sum_probs=16.4

Q ss_pred             cccccCCcceeccCCHHHHHHhh
Q 029213            3 RYYCDYCDTYLTHDSPSVRKQHN   25 (197)
Q Consensus         3 ryYCdYCd~~ft~Ds~SvRk~H~   25 (197)
                      +|.|.+|++-|  .|-..+--|.
T Consensus         5 ~~~C~~C~k~F--~s~qALGGH~   25 (37)
T d1njqa_           5 SYTCSFCKREF--RSAQALGGHM   25 (37)
T ss_dssp             SEECTTTCCEE--SSHHHHHHHH
T ss_pred             ccCCCCCCCcc--CCcccccchH
Confidence            68999999999  4555556675